RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16676
(461 letters)
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 171 bits (435), Expect = 4e-48
Identities = 58/178 (32%), Positives = 79/178 (44%), Gaps = 24/178 (13%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ +++ + +
Sbjct: 349 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQD-------- 400
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
+ R+ +EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 401 -------------GRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 447
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 418
V + WIGY NS NPLIY + DFR AF+ L SL
Sbjct: 448 QD--NLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG 502
Score = 133 bits (336), Expect = 3e-34
Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 95 HHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVA 154
+ R+ +EHKA +TLGIIMGTF LCWLPFF+ ++ + V
Sbjct: 401 GRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD--NLIRKEVYI 458
Query: 155 IFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 199
+ WIGY NS NPLIY + DFR AF+ L SL
Sbjct: 459 LLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG 502
Score = 31.4 bits (71), Expect = 0.58
Identities = 10/57 (17%), Positives = 22/57 (38%)
Query: 1 MVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAANRQEKQLHS 57
MVF Y +F+EA RQ +++ + + + ++ K+ +
Sbjct: 364 MVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKA 420
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 150 bits (381), Expect = 5e-42
Identities = 57/177 (32%), Positives = 80/177 (45%), Gaps = 43/177 (24%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS ISF+IP IM+F L +++EA Q +++
Sbjct: 178 AIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRAS---------------------- 215
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
+ + + + REHKA +TLGIIMG F LCWLPFFL ++
Sbjct: 216 ------------------KRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF 257
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREP 417
PD++ F W+GY NS +NP+IY + DFR+AFK L + R
Sbjct: 258 NR--DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKADRRLHH 311
Score = 124 bits (312), Expect = 3e-32
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 95 HHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVA 154
+ + + + REHKA +TLGIIMG F LCWLPFFL ++ PD++
Sbjct: 211 IDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR--DLVPDWLFV 268
Query: 155 IFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREP 198
F W+GY NS +NP+IY + DFR+AFK L + R
Sbjct: 269 AFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKADRRLHH 311
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 150 bits (379), Expect = 1e-40
Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 23/220 (10%)
Query: 1 MVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAANRQEKQLHSRHY 60
M+ YL IF A RQ L L + + + L R +
Sbjct: 218 MLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKAT 277
Query: 61 GNQLLLGNHG---------------------RDASYSNSNGDLAVGAGKLTLEDAHHSTP 99
+L + + + A +L +
Sbjct: 278 PPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQK 337
Query: 100 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWI 159
+R +++E AA++L II+G F LCWLP + T C D P +++ + +
Sbjct: 338 YLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVL 397
Query: 160 GYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 199
+ NS +NP IYAY R+FR+ F+ ++ ++EP
Sbjct: 398 SHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL--RQQEPF 435
Score = 139 bits (350), Expect = 1e-36
Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 5/206 (2%)
Query: 216 RTKSVYSDTYLKHHIDRRTSSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLH 275
+ + + + + A V +++ + E +
Sbjct: 232 QLADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEM 291
Query: 276 SRHYGNQLLLGNHGRDASYSNSNGDLA---VGAGKLTLEDAHHSTPTKDRNIIKMKREHK 332
+L DA + G + A +L + +R +++E
Sbjct: 292 KDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVH 351
Query: 333 AARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAY 392
AA++L II+G F LCWLP + T C D P +++ + + + NS +NP IYAY
Sbjct: 352 AAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAY 411
Query: 393 FNRDFREAFKNTLQCAFCSLCRREPS 418
R+FR+ F+ ++ ++EP
Sbjct: 412 RIREFRQTFRKIIRSHVL--RQQEPF 435
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 139 bits (350), Expect = 2e-36
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 94 AHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVV 153
T T D +++E AA++L II+G F LCWLP + T C D P +++
Sbjct: 373 TTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLM 432
Query: 154 AIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREP 198
+ + + NS +NP IYAY R+FR+ F+ ++ ++EP
Sbjct: 433 YLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL--RQQEP 475
Score = 139 bits (350), Expect = 2e-36
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Query: 313 AHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVV 372
T T D +++E AA++L II+G F LCWLP + T C D P +++
Sbjct: 373 TTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLM 432
Query: 373 AIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREP 417
+ + + NS +NP IYAY R+FR+ F+ ++ ++EP
Sbjct: 433 YLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL--RQQEP 475
Score = 53.6 bits (128), Expect = 7e-08
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 241 AIVSSSI-SFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNG 299
+ + +P +M+ YL IF A RQ L R Y ++ G
Sbjct: 192 MVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGL------RLKIYKDTEG 245
Query: 300 DLAVGAGKLTLEDAHHSTPTK 320
+G G L + +
Sbjct: 246 YYTIGIGHLLTKSPSLNAAKS 266
Score = 30.9 bits (69), Expect = 1.1
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 1 MVFTYLAIFKEANRQEKQLHSRHYGNQ 27
M+ YL IF A RQ
Sbjct: 208 MLGVYLRIFLAARRQLNIFEMLRIDEG 234
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 136 bits (344), Expect = 2e-35
Identities = 54/325 (16%), Positives = 90/325 (27%), Gaps = 25/325 (7%)
Query: 116 RTLGIIMGT----FILCWLPFFLWYVITSLCGDACDCP-DYVVAIFFWIGYFNSTLNPLI 170
R +I IL LP W I++L + P + I F F L ++
Sbjct: 177 RLFLLISACWVISLILGGLPIMGWNCISALSSCSTVLPLYHKHYILFCTTVFTLLLLSIV 236
Query: 171 --YAYFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYLKH 228
Y R + L + D + + + L
Sbjct: 237 ILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDK 296
Query: 229 HIDRRTSSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNH 288
I R T+ + + + A K + N +
Sbjct: 297 AIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGE 356
Query: 289 GRDASYSNSNGDLAVGAGKLTLEDAHHS------------------TPTKDRNIIKMKRE 330
A ++NS L + S T T D +
Sbjct: 357 TGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSEN 416
Query: 331 HKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIY 390
+T+ I++ FI CW P F+ ++ C + F + NS NP+IY
Sbjct: 417 VALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIY 476
Query: 391 AYFNRDFREAFKNTLQCAFCSLCRR 415
N++ R AF + L +
Sbjct: 477 TLTNKEMRRAFIRIMGRPLEVLFQG 501
Score = 128 bits (321), Expect = 2e-32
Identities = 24/102 (23%), Positives = 39/102 (38%)
Query: 95 HHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVA 154
T T D + +T+ I++ FI CW P F+ ++ C +
Sbjct: 400 TFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAE 459
Query: 155 IFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRR 196
F + NS NP+IY N++ R AF + L +
Sbjct: 460 YFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLFQG 501
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 131 bits (329), Expect = 1e-33
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 94 AHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVV 153
T T RE KA + + I++G FI+CWLPFFL +V+ + C C +
Sbjct: 380 TTFRTGTW-DAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT-CHVSPELY 437
Query: 154 AIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRRE 197
+ W+GY NS LNP+IY FN +FR+AF L C +
Sbjct: 438 SATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRPLEVLFQ 481
Score = 131 bits (329), Expect = 1e-33
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 313 AHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVV 372
T T RE KA + + I++G FI+CWLPFFL +V+ + C C +
Sbjct: 380 TTFRTGTW-DAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT-CHVSPELY 437
Query: 373 AIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRRE 416
+ W+GY NS LNP+IY FN +FR+AF L C +
Sbjct: 438 SATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRPLEVLFQ 481
Score = 54.4 bits (130), Expect = 4e-08
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRH 278
I SS +SF++P + V Y I+ ++ ++
Sbjct: 198 VIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEM 235
Score = 28.6 bits (63), Expect = 5.2
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 1 MVFTYLAIFKEANRQEKQLHSRH 23
V Y I+ ++ ++
Sbjct: 213 TVLVYARIYVVLKQRRRKNIFEM 235
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 129 bits (325), Expect = 4e-33
Identities = 56/318 (17%), Positives = 94/318 (29%), Gaps = 30/318 (9%)
Query: 125 FILCWLPFFLWYVIT---SLCGDACDCP---DYVVAIFFWIGYFNSTLNPLIYAYFNRDF 178
FIL W I ++ C + V I F + + Y+
Sbjct: 152 FILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYW-HIS 210
Query: 179 REA---FKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTY-LKHHIDRRT 234
R + R + E ++ S+ + L I R T
Sbjct: 211 RASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNT 270
Query: 235 SSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASY 294
+ + + + A K + N + A +
Sbjct: 271 NGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGF 330
Query: 295 SNSNGDLAVGAGKLTLEDAHHSTPTKD-----------------RNIIKMKREHKAARTL 337
+NS L + S RE K RT+
Sbjct: 331 TNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTI 390
Query: 338 GIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDF 397
I+ FI+ W P+ + +I + C P+ V I +W+ Y NST+NP YA N F
Sbjct: 391 LAILLAFIITWAPYNVMVLINTFCA--PCIPNTVWTIGYWLCYINSTINPACYALCNATF 448
Query: 398 REAFKNTLQCAFCSLCRR 415
++ FK+ L C + ++
Sbjct: 449 KKTFKHLLMCHYKNIGAT 466
Score = 128 bits (322), Expect = 1e-32
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 2/184 (1%)
Query: 13 NRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAANRQEKQLHSRHYGNQLLLGNHGRD 72
+ + +L DA + ++ E + ++L +
Sbjct: 285 QDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDE 344
Query: 73 ASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPF 132
A+ + + RE K RT+ I+ FI+ W P+
Sbjct: 345 AAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPY 404
Query: 133 FLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCS 192
+ +I + C P+ V I +W+ Y NST+NP YA N F++ FK+ L C + +
Sbjct: 405 NVMVLINTFCA--PCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKN 462
Query: 193 LCRR 196
+
Sbjct: 463 IGAT 466
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 127 bits (321), Expect = 2e-32
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 103 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYF 162
+EHKA +TLGIIMGTF LCWLPFF+ ++ + V + WIGY
Sbjct: 395 DAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD--NLIRKEVYILLNWIGYV 452
Query: 163 NSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 199
NS NPLIY + DFR AF+ L SL
Sbjct: 453 NSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG 488
Score = 127 bits (321), Expect = 2e-32
Identities = 40/97 (41%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 322 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYF 381
+EHKA +TLGIIMGTF LCWLPFF+ ++ + V + WIGY
Sbjct: 395 DAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD--NLIRKEVYILLNWIGYV 452
Query: 382 NSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 418
NS NPLIY + DFR AF+ L SL
Sbjct: 453 NSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNG 488
Score = 57.4 bits (138), Expect = 5e-09
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ L R Y ++ G
Sbjct: 207 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL------RLKIYKDTEGY 260
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHK 332
+G G L + + + + + +
Sbjct: 261 YTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 292
Score = 31.2 bits (70), Expect = 0.72
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 1 MVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAANRQEKQLHSRH 59
MVF Y +F+EA RQ L L + +D + G + L++
Sbjct: 222 MVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIY-KDTEGYYTIGIGHLLTKSPSLNAAK 279
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 126 bits (318), Expect = 4e-32
Identities = 61/332 (18%), Positives = 104/332 (31%), Gaps = 38/332 (11%)
Query: 111 EHKAARTLGIIMGTFILCWL-------PFFLWYVITS----LCGDACDCP---DYVVAIF 156
+ RT T + W P W D C+ +
Sbjct: 115 RYLKYRTKTRASATILGAWFLSFLWVIPILGWNHFMQQTSVRREDKCETDFYDVTWFKVM 174
Query: 157 FWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAF----CSLCRREPSDLDELDIRRASLR 212
I F +++ Y + ++ ++ L + D +
Sbjct: 175 TAIINFYLPTLLMLWFYA-KIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHL 233
Query: 213 YDDRTKSVYSDTYLKHHIDRRTSSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEK 272
+ + L I R T+ + + + A K
Sbjct: 234 LTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLD 293
Query: 273 QLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKD----------- 321
+ N + A ++NS L + S
Sbjct: 294 AVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITT 353
Query: 322 ------RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIF 375
+ M RE KAA+ LG IM FILCW+P+F+++++ + C + C +++
Sbjct: 354 FRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC--NEHLHMFT 411
Query: 376 FWIGYFNSTLNPLIYAYFNRDFREAFKNTLQC 407
W+GY NSTLNPLIY N +F++ FK L
Sbjct: 412 IWLGYINSTLNPLIYPLCNENFKKTFKRILHI 443
Score = 125 bits (314), Expect = 1e-31
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 103 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYF 162
+ M RE KAA+ LG IM FILCW+P+F+++++ + C + C +++ W+GY
Sbjct: 360 DAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC--NEHLHMFTIWLGYI 417
Query: 163 NSTLNPLIYAYFNRDFREAFKNTLQC 188
NSTLNPLIY N +F++ FK L
Sbjct: 418 NSTLNPLIYPLCNENFKKTFKRILHI 443
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 88.2 bits (219), Expect = 3e-19
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 100 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCP--DYVVAIFF 157
+ DR ++ + K + + +++ TF +CWLPF +++++ + D V
Sbjct: 232 SSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIM 291
Query: 158 WIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLR 212
W+ ++ NP+IY N FR FK+ +C D + L+++
Sbjct: 292 WLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC----CPFISAGDYEGLEMKSTRYL 342
Score = 88.2 bits (219), Expect = 3e-19
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 319 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCP--DYVVAIFF 376
+ DR ++ + K + + +++ TF +CWLPF +++++ + D V
Sbjct: 232 SSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIM 291
Query: 377 WIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLR 431
W+ ++ NP+IY N FR FK+ +C D + L+++
Sbjct: 292 WLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC----CPFISAGDYEGLEMKSTRYL 342
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 81.0 bits (200), Expect = 9e-17
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 96 HSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAI 155
+ K + + R + +++ F+ CW P ++ + L G V +
Sbjct: 317 RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGL-GVQPSSETAVAIL 375
Query: 156 FF--WIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCS 192
F +GY NS LNP++YA+ + +F+ F+ +
Sbjct: 376 RFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALG 414
Score = 81.0 bits (200), Expect = 9e-17
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 315 HSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAI 374
+ K + + R + +++ F+ CW P ++ + L G V +
Sbjct: 317 RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGL-GVQPSSETAVAIL 375
Query: 375 FF--WIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCS 411
F +GY NS LNP++YA+ + +F+ F+ +
Sbjct: 376 RFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALG 414
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 81.2 bits (200), Expect = 1e-16
Identities = 37/316 (11%), Positives = 77/316 (24%), Gaps = 58/316 (18%)
Query: 103 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYF 162
+ ++ + R + ++ + L
Sbjct: 206 LRLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLT-------------------- 245
Query: 163 NSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYS 222
S + ++ + + D I R + + K VY
Sbjct: 246 KSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA-----KLKPVYD 300
Query: 223 DTYLKHHIDRRTSSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQ 282
D + N + + F + R +Q
Sbjct: 301 SL------DAVRRAALINMVFQMGETGVAG-----------FTNSLRMLQQKRWDEAAVN 343
Query: 283 LLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMG 342
L K + + R + +++
Sbjct: 344 LAKSRWYNQTP-------------NRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVA 390
Query: 343 TFILCWLPFFLWYVITSLCG-DACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAF 401
FI+CW P ++ +I +L +GY NS LNP++YA+ + +F+ F
Sbjct: 391 VFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCF 450
Query: 402 KNTLQCAFCSLCRREP 417
+ S +P
Sbjct: 451 REFCIP--TSSTIEQP 464
Score = 80.4 bits (198), Expect = 2e-16
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 96 HSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCG-DACDCPDYVVA 154
K + + R + +++ FI+CW P ++ +I +L
Sbjct: 363 TFRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWH 422
Query: 155 IFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREP 198
+GY NS LNP++YA+ + +F+ F+ S +P
Sbjct: 423 FCIALGYTNSCLNPVLYAFLDENFKRCFREFCIP--TSSTIEQP 464
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 76.9 bits (189), Expect = 2e-15
Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 36/181 (19%)
Query: 242 IVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDL 301
+ + F+ P I+ F Y I + EK++ +
Sbjct: 202 LCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAM------------------------ 237
Query: 302 AVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
A +L ++ + E + A+ +I+ F+L W P+ + + +
Sbjct: 238 ---AKRLNAKELRKAQAGA-------NAEMRLAKISIVIVSQFLLSWSPYAV-VALLAQF 286
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLD 421
G Y + ++ NP+IY+ + FREA T + C+ + + +
Sbjct: 287 GPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW-VLTCCQFDDKETE 345
Query: 422 E 422
+
Sbjct: 346 D 346
Score = 69.6 bits (170), Expect = 6e-13
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 107 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTL 166
E + A+ +I+ F+L W P+ + + + G Y + ++
Sbjct: 252 GANAEMRLAKISIVIVSQFLLSWSPYAV-VALLAQFGPLEWVTPYAAQLPVMFAKASAIH 310
Query: 167 NPLIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLDE 203
NP+IY+ + FREA T + C+ + + ++
Sbjct: 311 NPMIYSVSHPKFREAISQTFPW-VLTCCQFDDKETED 346
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 70.5 bits (173), Expect = 2e-13
Identities = 31/177 (17%), Positives = 49/177 (27%), Gaps = 47/177 (26%)
Query: 242 IVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDL 301
I + F IP ++ F Y + Q
Sbjct: 206 IYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ-------------------------- 239
Query: 302 AVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
+ K E + R + I++ F++CWLP+
Sbjct: 240 --------------------ESATTQKAEKEVTRMVIIMVIAFLICWLPYAG-VAFYIFT 278
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 418
D + I + ++ NP+IY N+ FR TL C L E S
Sbjct: 279 HQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAS 335
Score = 69.0 bits (169), Expect = 5e-13
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 107 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTL 166
K E + R + I++ F++CWLP+ D + I + ++
Sbjct: 244 TQKAEKEVTRMVIIMVIAFLICWLPYAG-VAFYIFTHQGSDFGPIFMTIPAFFAKTSAVY 302
Query: 167 NPLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 199
NP+IY N+ FR TL C L E S
Sbjct: 303 NPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAS 335
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 65.3 bits (159), Expect = 1e-11
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 97 STPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFF---LWYVITSLCGDACDCP---- 149
T T D K ++ KA +T I++ F CWLP++ L C
Sbjct: 394 RTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENT 453
Query: 150 -DYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFC 191
++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 454 VHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRP 496
Score = 65.3 bits (159), Expect = 1e-11
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 316 STPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFF---LWYVITSLCGDACDCP---- 368
T T D K ++ KA +T I++ F CWLP++ L C
Sbjct: 394 RTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENT 453
Query: 369 -DYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFC 410
++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 454 VHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRP 496
Score = 31.0 bits (70), Expect = 0.91
Identities = 10/108 (9%), Positives = 22/108 (20%), Gaps = 27/108 (25%)
Query: 103 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGY- 161
+ + R + ++ + L + + IG
Sbjct: 235 KLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT-KSPSLNAAKSELDKAIGRN 293
Query: 162 -------------FNSTLNPL------------IYAYFNRDFREAFKN 184
FN ++ +Y + R A N
Sbjct: 294 TNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALIN 341
Score = 31.0 bits (70), Expect = 0.91
Identities = 10/108 (9%), Positives = 22/108 (20%), Gaps = 27/108 (25%)
Query: 322 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGY- 380
+ + R + ++ + L + + IG
Sbjct: 235 KLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLT-KSPSLNAAKSELDKAIGRN 293
Query: 381 -------------FNSTLNPL------------IYAYFNRDFREAFKN 403
FN ++ +Y + R A N
Sbjct: 294 TNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALIN 341
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 83/501 (16%), Positives = 145/501 (28%), Gaps = 183/501 (36%)
Query: 22 RHYGNQLLLGNHGRDASYSNSNGDL--AANRQEKQLHSRHYGNQLLLGNHG------RD- 72
++Y ++ D +++ L A QL + +G Q GN RD
Sbjct: 124 KNYITARIMAKRPFDKKSNSA---LFRAVGEGNAQLVAI-FGGQ---GNTDDYFEELRDL 176
Query: 73 -ASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLP 131
+Y GDL + + TL + +T ++ + G IL WL
Sbjct: 177 YQTYHVLVGDLIKFSAE-TLSELIRTTLDAEKVFTQ---------------GLNILEWLE 220
Query: 132 FFLWYVITSLCGDACDCPD--YVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCA 189
+ + PD Y+++I S PLI +Q A
Sbjct: 221 ------------NPSNTPDKDYLLSIPI------SC--PLIGV-------------IQLA 247
Query: 190 -FCSLCRR---EPSDLDELDIRRASLRYDDRTKSVY-------SDTYLKHHIDRRTSSEF 238
+ + P +L + + ++ + +D++ S F
Sbjct: 248 HYVVTAKLLGFTPGEL--RSYLKGAT---GHSQGLVTAVAIAETDSW---------ESFF 293
Query: 239 GNAIVSSSISFWI--------PCTIMVFTYLAIFKEANRQE------------KQLHSR- 277
+ + ++ F+I P T + + L E N +Q+
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 278 HYGNQLLLGNHGRDASYSNSNG-DLAVGAG--------KLTLEDAHHSTPTKDRNIIKMK 328
+ N L + S NG V +G LTL A + D++ I
Sbjct: 354 NKTNSHLPAG--KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-KAPSGLDQSRIPF- 409
Query: 329 REHKAARTLGIIMGTFILCWL----PFFLWYVITSLCGDACD--CPDYVVAIFFWIGYFN 382
E K F +L PF + L A D D V +
Sbjct: 410 SERKL---------KFSNRFLPVASPFH-----SHLLVPASDLINKDLVKNNVSFNA--- 452
Query: 383 STLN-PLIYAYFN-RDFREAFKNTLQCAFCSLCR---REPSDLDELDIRRASLRYDDRTK 437
+ P +Y F+ D R + + + R P + +A+
Sbjct: 453 KDIQIP-VYDTFDGSDLRVLSGSISE----RIVDCIIRLPVKWETTTQFKAT-------- 499
Query: 438 SVYSDTYLKHHIDRRTSSEFG 458
H +D FG
Sbjct: 500 ---------HILD------FG 505
Score = 38.9 bits (90), Expect = 0.004
Identities = 82/500 (16%), Positives = 132/500 (26%), Gaps = 225/500 (45%)
Query: 114 AARTLGIIMGTFILCWL-PFFLWYVITSL---------------CGDACDCPDYV---VA 154
+ R L + G+ L P +++ + L D D P V
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--DEPTTPAELVG 62
Query: 155 IFFWIGYFNSTLNP-----------LIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLDE 203
F +GY +S + P L F + L+
Sbjct: 63 KF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY----------------------LEG 98
Query: 204 LDI--RRASLRYDDRTKSVYSDTYLKHHIDRRTSSEFGNAIVSSSISFWIPCTIMVFTYL 261
DI A L ++ T V + +K++I R ++ S+S
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS--------------- 143
Query: 262 AIFKEANRQEKQLHSRHYGNQLLLGNHG------RD--ASYSNSNGDLAVGAGKLTLEDA 313
A+F+ QL + +G Q GN RD +Y GDL + + TL +
Sbjct: 144 ALFRAVGEGNAQLVAI-FGGQ---GNTDDYFEELRDLYQTYHVLVGDLIKFSAE-TLSEL 198
Query: 314 HHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWL-------------------PF--- 351
+T ++ + G IL WL P
Sbjct: 199 IRTTLDAEKVFTQ---------------GLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 352 --FLWYVIT-------------SLCGDACDCPDYVVAIF--------------------- 375
YV+T L G V A+
Sbjct: 244 IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 376 FWIG------YFNSTLNPLIYA-----------------------------YFNRDFRE- 399
F+IG Y N++L P I N
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 400 -----AFKNTLQ-----------CAFCSLCRRE--PSDLDELDIRRASLRYDDRTKSVYS 441
+ N + R+ PS LD ++ + + +R K +S
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD-----QSRIPFSER-KLKFS 417
Query: 442 DTYLKHHIDRRTSSEFGSSL 461
+ +L +S F S L
Sbjct: 418 NRFL------PVASPFHSHL 431
Score = 36.6 bits (84), Expect = 0.018
Identities = 33/180 (18%), Positives = 47/180 (26%), Gaps = 60/180 (33%)
Query: 161 YFNSTLNPLIYAYFNR-DFREAFKNTLQCAFCSLCRREPSDLDEL-------DIRRASLR 212
Y S +NR D FK+T + + P +L IR
Sbjct: 1636 YKTS---KAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE---N 1687
Query: 213 YDDRTKSVYSDTYLKHHIDRRTSSEFGNA-IVSSSISFWIP-----CT------IMVFTY 260
Y D LK T F S+S +F T + +
Sbjct: 1688 YSAMIFETIVDGKLK------TEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 261 LAIF----KEANRQEKQL---HSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDA 313
A F + HS LG Y+ LA A +++E
Sbjct: 1742 -AAFEDLKSKGLIPADATFAGHS--------LG------EYAA----LASLADVMSIESL 1782
Score = 28.5 bits (63), Expect = 5.9
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 18/39 (46%)
Query: 56 HSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDA 94
HS LG Y+ LA A +++E
Sbjct: 1762 HS--------LG------EYAA----LASLADVMSIESL 1782
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 74/527 (14%), Positives = 145/527 (27%), Gaps = 152/527 (28%)
Query: 3 FTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSN--GDLAANRQEKQLHSRHY 60
F I E + + +R Y Q RD Y+++ +R + L R
Sbjct: 93 FLMSPIKTEQR--QPSMMTRMYIEQ-------RDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 61 GNQLLLGNHGRDASYSNSNGDLAVGAGK--LTLE--DAHHSTPTKDRNI--IKMKREHKA 114
+L R A +G L G+GK + L+ ++ D I + +K +
Sbjct: 144 LLEL------RPAKNVLIDGVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 115 ARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYF 174
L ++ L Y I + D+ I I + L L+
Sbjct: 196 ETVLEMLQK----------LLYQIDP---NWTSRSDHSSNIKLRIHSIQAELRRLL---K 239
Query: 175 NRDFREAF--------KNTLQCAFCSLCR-----REPSDLDELD-IRRASLRYDDRTKSV 220
++ + AF C+ R D L + D + ++
Sbjct: 240 SKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 221 YSD---------------------------------TYLKHHIDR-----RTSSEFGNAI 242
D ++ + + + I
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 243 VSSSISFWIPCTI-MVFTYLAIF---------------KEANRQEKQLHSRHYGNQLLLG 286
+ SS++ P +F L++F + + + + L+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 287 NHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFIL 346
++++ S + L + KL E A H R+I+ K
Sbjct: 419 KQPKESTISIPSIYLEL-KVKLENEYALH------RSIVDHYNIPKT------------- 458
Query: 347 CWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGY-FNSTLNPLIYAYFNR---DFREAF- 401
F + D Y + IG+ + +P F DFR F
Sbjct: 459 -----FDSDDLIPPYLD-----QY---FYSHIGHHLKNIEHPERMTLFRMVFLDFR--FL 503
Query: 402 KNTLQCAFCSLCRREP--SDLDELDIRRASLRYDDRTKSVYSDTYLK 446
+ ++ + + L +L + + +D + L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Score = 38.7 bits (89), Expect = 0.004
Identities = 50/331 (15%), Positives = 91/331 (27%), Gaps = 106/331 (32%)
Query: 173 YFNRD----FREAFKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYLKH 228
Y +D F +AF + D D+ D KS+ S + H
Sbjct: 16 YQYKDILSVFEDAFV---------------DNFDCKDV-------QDMPKSILSKEEIDH 53
Query: 229 HIDRRTSSEFGNAIVSSSISFWIPC-----TIMVFT-------Y---LAIFKEANRQ--- 270
I +A+ + FW + F Y ++ K RQ
Sbjct: 54 II------MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 271 -----EKQLHSRHYGNQLLLGNHG---------RDASYS-NSNGDLAV----GAGK--LT 309
+Q + NQ+ + R A ++ + G+GK +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 310 LE--DAHHSTPTKDRNI--IKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDAC 365
L+ ++ D I + +K + L ++ L Y I +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----------LLYQIDP---NWT 214
Query: 366 DCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAF--------KNTLQCAFCSLCR--- 414
D+ I I + L L+ ++ + AF C+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNAKAWN-AFNLSCKILL 270
Query: 415 --REPSDLDELD-IRRASLRYDDRTKSVYSD 442
R D L + D + ++ D
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 33.7 bits (76), Expect = 0.14
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 35/152 (23%)
Query: 136 YVIT-SLCGDACDCP---DYVVAIFFWIGY-FNSTLNPLIYAYFNR---DFREAF-KNTL 186
Y I + D P Y + IG+ + +P F DFR F + +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQKI 507
Query: 187 QCAFCSLCRREP--SDLDELDIRRASLRYDDRTKSVYSDTYLK------HHIDRRTSSEF 238
+ + + L +L + + +D + L ++ S++
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC---SKY 564
Query: 239 GNAIVSSSISFWIPCTIMVFTYLAIFKEANRQ 270
+ ++ ++ AIF+EA++Q
Sbjct: 565 TD-LLRIALMA---------EDEAIFEEAHKQ 586
Score = 31.0 bits (69), Expect = 0.92
Identities = 51/377 (13%), Positives = 92/377 (24%), Gaps = 111/377 (29%)
Query: 139 TSLCGDACDCPDYVVAIF-----FWI--GYFNST---LNPLIYAYFNRDFREAFKNTLQC 188
T + D C Y V FW+ NS L L + +
Sbjct: 164 TWVALDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLEML----------QKLLYQIDP 211
Query: 189 AFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYL-------KHHIDRRTSSEFGNA 241
+ S + + +A LR ++K Y + L +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWN---------- 260
Query: 242 IVSSSISFWIPCTIMVFT-YLAIF-KEANRQEKQLHSRHYGNQL-------LLGNHGRDA 292
+F + C I++ T + + + + H+ L LL
Sbjct: 261 ------AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL------L 308
Query: 293 SYSN-SNGDLAVGA-----------GKLTLEDAHHSTPTKDRNIIKMKR----------- 329
Y + DL + + K N K+
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 330 -EHKAA-RTLGIIM-GTFI----LCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFN 382
E++ L + I L +W+ + VV
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIK------SDVMVVVNKLHKYSLVE 418
Query: 383 STLNPLIYAYFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSV--- 439
+ + K + A L R +D +I + DD
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYA---LHRSI---VDHYNIPKT-FDSDDLIPPYLDQ 471
Query: 440 YSDTYLKHHIDRRTSSE 456
Y +++ HH+ E
Sbjct: 472 YFYSHIGHHLKNIEHPE 488
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 30.5 bits (68), Expect = 0.074
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 162 FNSTLNPLIYAYFNRDFREAFKNTLQ 187
NST+NP+IYA ++D R AF++
Sbjct: 12 LNSTVNPIIYALRSKDLRHAFRSMFP 37
Score = 30.5 bits (68), Expect = 0.074
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 381 FNSTLNPLIYAYFNRDFREAFKNTLQ 406
NST+NP+IYA ++D R AF++
Sbjct: 12 LNSTVNPIIYALRSKDLRHAFRSMFP 37
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane
protein; NMR {Synthetic}
Length = 33
Score = 29.6 bits (66), Expect = 0.13
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 113 KAARTLGIIMGTFILCWLP 131
+ A+TLG+++ ++CW P
Sbjct: 3 RLAKTLGLVLAVLLICWFP 21
Score = 29.6 bits (66), Expect = 0.13
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 332 KAARTLGIIMGTFILCWLP 350
+ A+TLG+++ ++CW P
Sbjct: 3 RLAKTLGLVLAVLLICWFP 21
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna,
retinal, transport protein; HET: SXN UNL RET PX4 PCW;
1.90A {Salinibacter ruber}
Length = 273
Score = 31.6 bits (70), Expect = 0.54
Identities = 17/177 (9%), Positives = 45/177 (25%), Gaps = 7/177 (3%)
Query: 246 SISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLG----NHGRDASYSNSNGDL 301
F M +++ N + + L++ ++ R S + L
Sbjct: 17 FNMFSFTVATMTASFVFFVLARNNVAPKYRISMMVSALVVFIAGYHYFRITSSWEAAYAL 76
Query: 302 AVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILC---WLPFFLWYVIT 358
G + T E + + D + + +G+ ++
Sbjct: 77 QNGMYQPTGELFNDAYRYVDWLLTVPLLTVELVLVMGLPKNERGPLAAKLGFLAALMIVL 136
Query: 359 SLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSLCRR 415
G+ + W ++Y F + + + + + R
Sbjct: 137 GYPGEVSENAALFGTRGLWGFLSTIPFVWILYILFTQLGDTIQRQSSRVSTLLGNAR 193
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum,
molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A
{Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2
PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Length = 166
Score = 27.5 bits (62), Expect = 7.0
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 21/58 (36%)
Query: 163 NSTLNPLIYAYFNRDFREAFKNT--LQCAFC---------SLCRREPSDLDELDIRRA 209
+ TL+ L +E F+ LQC +C L + P E +IR
Sbjct: 84 DGTLSAL---------QEGFRMMHGLQCGYCTPGMIMRSHRLLQENP-SPTEAEIRFG 131
Score = 27.5 bits (62), Expect = 7.0
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 21/58 (36%)
Query: 382 NSTLNPLIYAYFNRDFREAFKNT--LQCAFC---------SLCRREPSDLDELDIRRA 428
+ TL+ L +E F+ LQC +C L + P E +IR
Sbjct: 84 DGTLSAL---------QEGFRMMHGLQCGYCTPGMIMRSHRLLQENP-SPTEAEIRFG 131
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase;
hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga
pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Length = 163
Score = 27.1 bits (61), Expect = 7.8
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 180 EAFKNT--LQCAFC---------SLCRREPSDLDELDIRRA 209
E F LQC FC + P + E +IR
Sbjct: 91 EGFYKEHGLQCGFCTPGMLMRAYRFLQENP-NPTEAEIRMG 130
Score = 27.1 bits (61), Expect = 7.8
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 12/41 (29%)
Query: 399 EAFKNT--LQCAFC---------SLCRREPSDLDELDIRRA 428
E F LQC FC + P + E +IR
Sbjct: 91 EGFYKEHGLQCGFCTPGMLMRAYRFLQENP-NPTEAEIRMG 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.436
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,121,352
Number of extensions: 417927
Number of successful extensions: 1148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1103
Number of HSP's successfully gapped: 86
Length of query: 461
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 364
Effective length of database: 3,993,456
Effective search space: 1453617984
Effective search space used: 1453617984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)