RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16676
         (461 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 84.6 bits (208), Expect = 1e-18
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLN 167
            K E +  R + I++  F++CWLP+              D     + I  +    ++  N
Sbjct: 244 QKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH-QGSDFGPIFMTIPAFFAKTSAVYN 302

Query: 168 PLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 199
           P+IY   N+ FR     TL C    L   E S
Sbjct: 303 PVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAS 334



 Score = 84.6 bits (208), Expect = 1e-18
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 327 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLN 386
            K E +  R + I++  F++CWLP+              D     + I  +    ++  N
Sbjct: 244 QKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH-QGSDFGPIFMTIPAFFAKTSAVYN 302

Query: 387 PLIYAYFNRDFREAFKNTLQCAFCSLCRREPS 418
           P+IY   N+ FR     TL C    L   E S
Sbjct: 303 PVIYIMMNKQFRNCMVTTLCCGKNPLGDDEAS 334


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 27.0 bits (59), Expect = 5.2
 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 4/56 (7%)

Query: 173 YFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYLKH 228
           +    + E  K T+             + D      A   Y+   + +     + H
Sbjct: 104 FLPSPYAEQLKETI----LPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDH 155



 Score = 27.0 bits (59), Expect = 5.2
 Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 4/56 (7%)

Query: 392 YFNRDFREAFKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYLKH 447
           +    + E  K T+             + D      A   Y+   + +     + H
Sbjct: 104 FLPSPYAEQLKETI----LPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRIIDH 155


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,736,196
Number of extensions: 80778
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 10
Length of query: 461
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 373
Effective length of database: 1,199,356
Effective search space: 447359788
Effective search space used: 447359788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)