BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16677
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 19 DSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFA 78
D+ + DE +W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA A
Sbjct: 173 DAYAADE-----VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACA 227
Query: 79 DMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKP 138
D+++ + + F A+ +T W F F C+ W S+DV TASI LC I+VDRY+AI P
Sbjct: 228 DLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSP 287
Query: 139 LKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
KY +TK ++L VW+ + SF+PI WY T + Y CDF
Sbjct: 288 FKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 342
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 4/161 (2%)
Query: 33 MTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNAS 92
M+L ++++ +IVA GN+LVI ++ ++L+ +TN F+ SLA AD++V ++ + F A+
Sbjct: 14 MSLLMALVVLLIVA---GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGAT 70
Query: 93 VQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAF 152
+ V G W + F+C++W SLDV TASI LC I++DRY AI P +Y MT+
Sbjct: 71 LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKV 130
Query: 153 MLLNVWVSPAVISFVPIMCGWYTTSEHLKYR-YQHPNICDF 192
++ VW A++SF+PIM W+ + + YQ P CDF
Sbjct: 131 IICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDF 171
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 100/161 (62%), Gaps = 4/161 (2%)
Query: 33 MTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNAS 92
M+L ++++ +IVA GN+LVI ++ ++L+ +TN F+ SLA AD++V ++ + F A+
Sbjct: 14 MSLLMALVVLLIVA---GNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGAT 70
Query: 93 VQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAF 152
+ V G W + F+C++W SLDV TASI LC I++DRY AI P +Y MT+
Sbjct: 71 LVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKV 130
Query: 153 MLLNVWVSPAVISFVPIMCGWYTTSEHLKYR-YQHPNICDF 192
++ VW A++SF+PIM W+ + + YQ P CDF
Sbjct: 131 IICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCCDF 171
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 20 STSPDENVSSI---IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLA 76
S +PD +V+ +W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA
Sbjct: 25 SHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLA 84
Query: 77 FADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV 136
AD+++ + + F A+ + W F F C+ W S+DV TASI LC I+VDRY+AI
Sbjct: 85 CADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLCVIAVDRYFAIT 144
Query: 137 KPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
P KY +TK ++L VW+ + SF+PI WY T + Y CDF
Sbjct: 145 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 201
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 20 STSPDENVSSI---IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLA 76
S +PD +V+ +W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA
Sbjct: 24 SHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLA 83
Query: 77 FADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV 136
AD+++ + + F A+ + W F F C+ W S+DV TASI LC I+VDRY+AI
Sbjct: 84 CADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAIT 143
Query: 137 KPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
P KY +TK ++L VW+ + SF+PI WY T + Y CDF
Sbjct: 144 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 200
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 20 STSPDENVSSI---IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLA 76
S +PD +V+ +W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA
Sbjct: 25 SHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLA 84
Query: 77 FADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV 136
AD+++ + + F A+ + W F F C+ W S+DV TASI LC I+VDRY+AI
Sbjct: 85 CADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAIT 144
Query: 137 KPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
P KY +TK ++L VW+ + SF+PI WY T + Y CDF
Sbjct: 145 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 201
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 20 STSPDENVSSI---IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLA 76
S +PD +V+ +W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA
Sbjct: 18 SHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLA 77
Query: 77 FADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV 136
AD+++ + + F A+ + W F F C+ W S+DV TASI LC I+VDRY+AI
Sbjct: 78 CADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAIT 137
Query: 137 KPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
P KY +TK ++L VW+ + SF+PI WY T + Y CDF
Sbjct: 138 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 194
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 4/177 (2%)
Query: 20 STSPDENVSSI---IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLA 76
S +PD +V+ +W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA
Sbjct: 17 SHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLA 76
Query: 77 FADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV 136
AD+++ + + F A+ + W F F C+ W S+DV TASI LC I+VDRY+AI
Sbjct: 77 CADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAIT 136
Query: 137 KPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
P KY +TK ++L VW+ + SF+PI WY T + Y + CDF
Sbjct: 137 SPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDF 193
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 31 IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFN 90
+W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA AD+++ + + F
Sbjct: 3 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 62
Query: 91 ASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVV 150
A+ +T W F F C+ W S+DV TASI LC I+VDRY+AI P KY +TK
Sbjct: 63 AAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 122
Query: 151 AFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
++L VW+ + SF+PI WY T + Y CDF
Sbjct: 123 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 165
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 93/163 (57%), Gaps = 1/163 (0%)
Query: 31 IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFN 90
+W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA AD+++ + + F
Sbjct: 7 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 66
Query: 91 ASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVV 150
A+ + W F F C+ W S+DV TASI LC I+VDRY+AI P KY +TK
Sbjct: 67 AACILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 126
Query: 151 AFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
++L VW+ + SF+PI WY T + Y CDF
Sbjct: 127 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDF 169
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 31 IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFN 90
+W+ +M I++A + GN+LVI ++ + +L+ +TNYF+ SLA AD+++ + + F
Sbjct: 8 VWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 67
Query: 91 ASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVV 150
A+ + W F F C+ W S+DV TASI LC I+VDRY+AI P KY +TK
Sbjct: 68 AAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKA 127
Query: 151 AFMLLNVWVSPAVISFVPIMCGWY-TTSEHLKYRYQHPNICDF 192
++L VW+ + SF+PI WY T + Y + CDF
Sbjct: 128 RVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYANETCCDF 170
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 13/152 (8%)
Query: 43 IIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGK-WNF 101
+I+A + GN LV ++V++ R L+ TNY VVSLA AD+LVA + M + ++VTG WNF
Sbjct: 48 LILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNF 107
Query: 102 SFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTK---RVVAFMLLNVW 158
S CDV+ +LDV TASI +LC IS+DRY A+V P+ Y + R VA M+ VW
Sbjct: 108 SRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVW 167
Query: 159 VSPAVISFVPIMCGWYTTSEHLKYRYQHPNIC 190
V +S P++ G+ TT + P +C
Sbjct: 168 VLAFAVS-CPLLFGFNTTGD--------PTVC 190
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 10/150 (6%)
Query: 21 TSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADM 80
TSP + + + + S+ + I+ GN+LV+VS+ +R L+ + NYF+ SLA AD+
Sbjct: 15 TSPYKTFEVVFIVLVAGSLSLVTII----GNILVMVSIKVNRHLQTVNNYFLFSLACADL 70
Query: 81 LVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLK 140
++ + +M V G W +CD+W +LD S AS+++L IS DRY+ + KPL
Sbjct: 71 IIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLT 130
Query: 141 YPINMTKRVVAFMLLNVWV------SPAVI 164
YP+ T ++ M+ WV +PA++
Sbjct: 131 YPVKRTTKMAGMMIAAAWVLSFILWAPAIL 160
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 42 FIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNF 101
F+ + +I GN+LVIV+ +++L+ + NYF++SLA AD+++ +++M + + +W
Sbjct: 21 FLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWAL 80
Query: 102 SFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSP 161
CD+W S+D S AS+++L IS DRY++I +PL Y T + M+ W
Sbjct: 81 GNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW--- 137
Query: 162 AVISFV 167
VISFV
Sbjct: 138 -VISFV 142
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 8/153 (5%)
Query: 43 IIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFS 102
I + ++G NLLV+ +V RKL + N ++VSL+ AD++V V M N + KW+
Sbjct: 18 ICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLG 77
Query: 103 FFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPA 162
+C W S+D STASI + + +DRY ++ +PL+Y TK + +L W
Sbjct: 78 RPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAW---- 133
Query: 163 VISF---VPIMCGWYTTSEHLKYRYQHPNICDF 192
+SF +PI+ GW + R + DF
Sbjct: 134 FLSFLWVIPIL-GWNHFMQQTSVRREDKCETDF 165
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 95/178 (53%), Gaps = 12/178 (6%)
Query: 18 TDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAF 77
T+++ P++ V + L A+ I+V S+ GN++V+ ++ H+++R +TNYF+V+LAF
Sbjct: 17 TNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAF 76
Query: 78 ADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVK 137
A+ +A N + V +W + F C N + ASI + ++ DRY AI+
Sbjct: 77 AEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIH 136
Query: 138 PLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRY-------QHPN 188
PL+ ++ T V + +WV +++F G+Y+T+E + R +HPN
Sbjct: 137 PLQPRLSATATKVVICV--IWVLALLLAFPQ---GYYSTTETMPSRVVCMIEWPEHPN 189
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 4/132 (3%)
Query: 41 IFIIVASIG--GNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGK 98
++ IV +G GN LV+ ++R+ K++ TN ++ +LA AD L A + F + + G
Sbjct: 23 LYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSVNYLMGT 81
Query: 99 WNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVW 158
W F +C + S+D Y SI LC +SVDRY A+ P+K T R + + W
Sbjct: 82 WPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNW 141
Query: 159 VSPAVISFVPIM 170
+ + I +P+M
Sbjct: 142 ILSSAIG-LPVM 152
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 5/170 (2%)
Query: 27 VSSIIWMTLRASIMIFIIVASIGG---NLLVIVSVMRHRKLRIITNYFVVSLAFADMLVA 83
+ + + + L+ +I+ + +GG N LV+ ++RH K++ TN ++ +LA AD LV
Sbjct: 116 LGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLV- 174
Query: 84 MVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPI 143
++ + F + + G W F +C ++D Y S L +SVDRY AI P++
Sbjct: 175 LLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALD 234
Query: 144 NMTKRVVAFMLLNVWVSPAVISF-VPIMCGWYTTSEHLKYRYQHPNICDF 192
T + + +W +V+ V IM E ++ + P D+
Sbjct: 235 VRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPTPQDY 284
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 4/154 (2%)
Query: 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG 97
++ + I V +I GN+LV +V + L+ +TNYFVVSLA AD+LV ++A+ F ++ ++
Sbjct: 11 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPF--AITIST 68
Query: 98 KWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNV 157
+ + C + + +SI L I++DRY AI PL+Y +T A ++
Sbjct: 69 GFCAACHGCLFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAIC 128
Query: 158 WVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 191
WV I P M GW + K H C
Sbjct: 129 WVLSFAIGLTP-MLGWNNCGQP-KEGKNHSQGCG 160
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Query: 43 IIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFS 102
+ V + GN LV+ ++R+ K++ TN ++ +LA AD LV M F ++V + W F
Sbjct: 32 VFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TTMPFQSTVYLMNSWPFG 90
Query: 103 FFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPA 162
+C + S+D Y SI L +SVDRY A+ P+K T + + +W+ +
Sbjct: 91 DVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSS 150
Query: 163 VISFVPIMCGWYTTSEHL 180
+ I+ G E +
Sbjct: 151 SVGISAIVLGGTKVREDV 168
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
Query: 18 TDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAF 77
D D+ I+ ++ ++ + I V +I GN+LV +V + L+ +TNYFVVSLA
Sbjct: 16 ADYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAA 75
Query: 78 ADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVK 137
AD+ V ++A+ F ++ ++ + + C + + +SI L I++DRY AI
Sbjct: 76 ADIAVGVLAIPF--AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRI 133
Query: 138 PLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNIC 190
PL+Y +T ++ WV I P M GW + K H C
Sbjct: 134 PLRYNGLVTGTRAKGIIAICWVLSFAIGLTP-MLGWNNCGQP-KEGKNHSQGC 184
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 5/151 (3%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIG--GNLLVIVSVMRHRKLRIITNYFVVSLAFAD 79
SP +S + + + A ++ V ++G GN+LV+ ++R+ KL+ TN ++ +LA AD
Sbjct: 2 SPGARSASSLALAI-AITALYSAVCAVGLLGNVLVMFGIVRYTKLKTATNIYIFNLALAD 60
Query: 80 MLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL 139
L A + F ++ + W F +C S+D Y SI L +SVDRY A+ P+
Sbjct: 61 AL-ATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV 119
Query: 140 KYPINMTKRVVAFMLLNVWVSPAVISFVPIM 170
K T + + +WV + + VPIM
Sbjct: 120 KALDFRTPAKAKLINICIWVLASGVG-VPIM 149
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 4/154 (2%)
Query: 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG 97
++ + I V +I GN+LV +V + L+ +TNYFVVSLA AD+ V ++A+ F ++ ++
Sbjct: 11 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITIST 68
Query: 98 KWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNV 157
+ + C + + +SI L I++DRY AI PL+Y +T ++
Sbjct: 69 GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 128
Query: 158 WVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 191
WV I P M GW + K QH C
Sbjct: 129 WVLSFAIGLTP-MLGWNNCGQP-KEGKQHSQGCG 160
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 4/172 (2%)
Query: 19 DSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFA 78
D+ I+ ++ ++ + I V +I GN+LV +V + L+ +TNYFVVSLA A
Sbjct: 7 DAMGQPVGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAA 66
Query: 79 DMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKP 138
D+ V ++A+ F ++ ++ + + C + + +SI L I++DRY AI P
Sbjct: 67 DIAVGVLAIPF--AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIP 124
Query: 139 LKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNIC 190
L+Y +T ++ WV I P M GW + K H C
Sbjct: 125 LRYNGLVTGTRAKGIIAICWVLSFAIGLTP-MLGWNNCGQP-KEGKNHSQGC 174
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG 97
++ + I V +I GN+LV +V + L+ +TNYFVVS A AD+LV ++A+ F ++ ++
Sbjct: 11 TVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPF--AIAIST 68
Query: 98 KWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNV 157
+ + C + + +SI L I++DRY AI PL+Y +T ++
Sbjct: 69 GFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAIC 128
Query: 158 WVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 191
WV I P M GW + K H C
Sbjct: 129 WVLSFAIGLTP-MLGWNNCGQP-KEGKAHSQGCG 160
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 60 RHRKLRIITNYFVVSLAFADMLVAMV----AMTFNASVQVTGKWNFSFFMCDVWNSLDVY 115
+ + L+ N F+++LAF+D ++V MT + ++ KW F F C V+ +
Sbjct: 60 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK---KWIFGFAACKVYGFIGGI 116
Query: 116 FSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
F SI+ + IS+DRY I +P+ M+ R M++ VW+ + + PI GW
Sbjct: 117 FGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF-GW 173
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 60 RHRKLRIITNYFVVSLAFADMLVAMV----AMTFNASVQVTGKWNFSFFMCDVWNSLDVY 115
+ + L+ N F+++LAF+D ++V MT + ++ KW F F C V+ +
Sbjct: 61 KTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLK---KWIFGFAACKVYGFIGGI 117
Query: 116 FSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
F SI+ + IS+DRY I +P+ M+ R M++ VW+ + + PI GW
Sbjct: 118 FGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF-GW 174
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG 97
+I I + I GN LVI+ + +KLR +T+ + + L+ AD+L ++ + F A V
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWA-VDAVA 110
Query: 98 KWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL--KYPINMTKRVVAFMLL 155
W F F+C + + +S+ L IS+DRY AIV + P + V ++
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV-- 168
Query: 156 NVWVSPAVISFVP 168
VW+ PA++ +P
Sbjct: 169 GVWI-PALLLTIP 180
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG 97
+I I + I GN LVI+ + +KLR +T+ + + L+ AD+L ++ + F A V
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWA-VDAVA 110
Query: 98 KWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL--KYPINMTKRVVAFMLL 155
W F F+C + + +S+ L IS+DRY AIV + P + V ++
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV-- 168
Query: 156 NVWVSPAVISFVP 168
VW+ PA++ +P
Sbjct: 169 GVWI-PALLLTIP 180
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG 97
+I I + I GN LVI+ + +KLR +T+ + + L+ AD+L ++ + F A V
Sbjct: 53 TIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWA-VDAVA 110
Query: 98 KWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL--KYPINMTKRVVAFMLL 155
W F F+C + + +S+ L IS+DRY AIV + P + V ++
Sbjct: 111 NWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYV-- 168
Query: 156 NVWVSPAVISFVP 168
VW+ PA++ +P
Sbjct: 169 GVWI-PALLLTIP 180
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADML 81
+P ++ ++ A+ M +I+ N L + ++H+KLR NY +++LA AD+
Sbjct: 27 APQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF 86
Query: 82 VAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL-- 139
+ T + G + F C++ ++ L ++++RY + KP+
Sbjct: 87 MVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN 146
Query: 140 -KYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
++ N VAF WV A+ P + GW
Sbjct: 147 FRFGENHAIMGVAF----TWVM-ALACAAPPLVGW 176
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADML 81
+P ++ ++ A+ M +I+ N L + ++H+KLR NY +++LA AD+
Sbjct: 26 APQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF 85
Query: 82 VAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL-- 139
+ T + G + F C++ ++ L ++++RY + KP+
Sbjct: 86 MVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN 145
Query: 140 -KYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
++ N VAF WV A+ P + GW
Sbjct: 146 FRFGENHAIMGVAF----TWVM-ALACAAPPLVGW 175
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADML 81
+P ++ ++ A+ M +I+ N L + ++H+KLR NY +++LA AD+
Sbjct: 27 APQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF 86
Query: 82 VAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL-- 139
+ T + G + F C++ ++ L ++++RY + KP+
Sbjct: 87 MVFGGFTTTLYTSLHGYFVFGPTGCNLQGFFATLGGEIALWSLVVLAIERYVVVCKPMSN 146
Query: 140 -KYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
++ N VAF WV A+ P + GW
Sbjct: 147 FRFGENHAIMGVAF----TWVM-ALACAAPPLVGW 176
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADML 81
+P ++ ++ A+ M +I+ N L + ++H+KLR NY +++LA AD+
Sbjct: 27 APQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF 86
Query: 82 VAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL-- 139
+ T + G + F C++ ++ L ++++RY + KP+
Sbjct: 87 MVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN 146
Query: 140 -KYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
++ N VAF WV A+ P + GW
Sbjct: 147 FRFGENHAIMGVAF----TWVM-ALACAAPPLVGW 176
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADML 81
+P ++ ++ A+ M +I+ N L + ++H+KLR NY +++LA AD+
Sbjct: 27 APQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF 86
Query: 82 VAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL-- 139
+ T + G + F C++ ++ L ++++RY + KP+
Sbjct: 87 MVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN 146
Query: 140 -KYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
++ N VAF WV A+ P + GW
Sbjct: 147 FRFGENHAIMGVAF----TWVM-ALACAAPPLVGW 176
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 22 SPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADML 81
+P ++ ++ A+ M +I+ N L + ++H+KLR NY +++LA AD+
Sbjct: 26 APQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLF 85
Query: 82 VAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPL-- 139
+ T + G + F C++ ++ L ++++RY + KP+
Sbjct: 86 MVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSN 145
Query: 140 -KYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173
++ N VAF WV A+ P + GW
Sbjct: 146 FRFGENHAIMGVAF----TWVM-ALACAAPPLVGW 175
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 42 FIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNF 101
+ + S+ GN LV++ ++ R R +T+ ++++LA AD+L A+ + AS +V G W F
Sbjct: 20 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAAS-KVNG-WIF 77
Query: 102 SFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVW 158
F+C V + L + IL L CISVDRY AIV + + + +V F+ L W
Sbjct: 78 GTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATR-TLTQKRHLVKFVCLGCW 133
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 32 WMTL-RASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFN 90
W+TL S+ + V S+ N++ IV + K++ +++ LA AD+L V + F
Sbjct: 18 WLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSV-LPFK 76
Query: 91 ASVQVTGK-WNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRV 149
S +G W F +C + ASIL + IS+DR+ A+V P++ T
Sbjct: 77 ISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGR 136
Query: 150 VAFMLLNVWVSPAVISFVPIM 170
+F L +W + A+ VP++
Sbjct: 137 ASFTCLAIW-ALAIAGVVPLL 156
>pdb|1HLL|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 37.0 bits (84), Expect = 0.008, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 118 TASILHLCCISVDRYYAIVKPLKYPINMTKR 148
T+SI+HLC IS+DRY++I + ++Y + T R
Sbjct: 1 TSSIVHLCAISLDRYWSITQAIEYNLKRTPR 31
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 88/174 (50%), Gaps = 21/174 (12%)
Query: 8 FDASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVAS--IGGNLLVIVSVMRHRKLR 65
+D + YN T N+S+ +++ + ++FI++ I N+ V++++ + +K
Sbjct: 40 YDIIVRHYNYTGKL----NISADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFH 95
Query: 66 IITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSF-----FMCDVWNSLDVYFSTAS 120
YF+ +LA +D+L + + A++ ++G + F+ + S+ V S AS
Sbjct: 96 RPMYYFIGNLALSDLL---AGVAYTANLLLSGATTYKLTPAQWFLRE--GSMFVALS-AS 149
Query: 121 ILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNV-WVSPAVISFVPIMCGW 173
+ L I+++RY ++K + N + F+L++ WV ++ +PIM GW
Sbjct: 150 VFSLLAIAIERYITMLKMKLH--NGSNNFRLFLLISACWVISLILGGLPIM-GW 200
>pdb|1HOF|A Chain A, Nmr Structure Of T3-I2, A 32 Residue Peptide From The
Alpha- 2a Adrenergic Receptor
Length = 32
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 119 ASILHLCCISVDRYYAIVKPLKYPINMTKR 148
+SI+HLC IS+DRY++I + ++Y + T R
Sbjct: 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR 31
>pdb|1HO9|A Chain A, Best 20 Nmr Conformers Of D130i Mutant T3-I2, A 32 Residue
Peptide From The Alpha 2a Adrenergic Receptor
pdb|1HOD|A Chain A, Nmr Structure Of D130i Mutant T3-I2, A 32 Residue Peptide
From The Alpha 2a Adrenergic Receptor
Length = 32
Score = 31.6 bits (70), Expect = 0.41, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 119 ASILHLCCISVDRYYAIVKPLKYPINMTKR 148
+SI+HLC IS+ RY++I + ++Y + T R
Sbjct: 2 SSIVHLCAISLIRYWSITQAIEYNLKRTPR 31
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 99 WNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVW 158
W F C + L + A+ L++ +SV RY AI P K M++ + +W
Sbjct: 103 WAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIW 162
Query: 159 VSPAVISFVPIM 170
++ A+++ +P++
Sbjct: 163 LASALLA-IPML 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,442,137
Number of Sequences: 62578
Number of extensions: 173152
Number of successful extensions: 414
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 43
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)