Query psy16677
Match_columns 227
No_of_seqs 147 out of 2023
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:09:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 1.8E-26 3.8E-31 187.3 9.1 144 26-171 28-171 (423)
2 PHA03234 DNA packaging protein 99.9 6.5E-24 1.4E-28 176.1 16.4 140 28-171 27-168 (338)
3 KOG4220|consensus 99.9 1E-25 2.2E-30 183.0 2.0 162 28-193 25-186 (503)
4 PHA02638 CC chemokine receptor 99.9 1.3E-22 2.9E-27 172.5 17.0 140 29-171 94-233 (417)
5 PHA03235 DNA packaging protein 99.9 4.6E-22 1E-26 168.7 16.4 140 30-172 29-170 (409)
6 PHA02834 chemokine receptor-li 99.9 3.9E-22 8.4E-27 164.9 15.3 135 32-170 27-161 (323)
7 PHA03087 G protein-coupled che 99.9 5.5E-22 1.2E-26 164.8 15.0 139 30-170 37-175 (335)
8 PF00001 7tm_1: 7 transmembran 99.9 2E-21 4.4E-26 153.9 8.6 143 50-197 1-143 (257)
9 KOG2087|consensus 99.7 2.6E-16 5.6E-21 127.0 9.9 163 16-179 7-176 (363)
10 PF10328 7TM_GPCR_Srx: Serpent 99.6 2.7E-15 5.8E-20 121.4 9.2 155 43-197 3-161 (274)
11 PF10320 7TM_GPCR_Srsx: Serpen 99.6 2.6E-15 5.7E-20 120.2 6.2 118 45-164 2-119 (257)
12 PF05462 Dicty_CAR: Slime mold 98.7 6.3E-07 1.4E-11 73.2 15.1 133 33-173 6-138 (303)
13 PF10324 7TM_GPCR_Srw: Serpent 98.7 4E-08 8.7E-13 81.2 6.9 126 43-169 6-143 (318)
14 PF10323 7TM_GPCR_Srv: Serpent 98.7 1.5E-08 3.2E-13 82.4 3.9 125 44-168 5-138 (283)
15 PF05296 TAS2R: Mammalian tast 98.5 7E-06 1.5E-10 67.4 14.8 131 32-162 5-142 (303)
16 PF11710 Git3: G protein-coupl 98.4 7.8E-06 1.7E-10 63.0 11.0 77 62-138 30-106 (201)
17 PF10321 7TM_GPCR_Srt: Serpent 98.0 4.9E-05 1.1E-09 62.5 9.1 118 30-152 29-152 (313)
18 PF10316 7TM_GPCR_Srbc: Serpen 98.0 0.0001 2.2E-09 59.4 10.4 117 34-151 6-126 (273)
19 PF03402 V1R: Vomeronasal orga 98.0 3.8E-05 8.2E-10 61.4 7.9 101 63-166 6-111 (265)
20 PF10317 7TM_GPCR_Srd: Serpent 97.8 0.00012 2.5E-09 59.9 8.9 125 38-168 3-139 (292)
21 PF10292 7TM_GPCR_Srab: Serpen 97.5 0.0021 4.6E-08 53.3 11.9 131 33-164 16-153 (324)
22 PF00002 7tm_2: 7 transmembran 97.4 7E-05 1.5E-09 59.4 1.9 128 38-170 5-132 (242)
23 PF03383 Serpentine_r_xa: Caen 97.1 0.0018 3.8E-08 47.3 6.0 64 107-170 45-108 (153)
24 PF02118 Srg: Srg family chemo 96.6 0.0043 9.3E-08 50.1 5.2 122 42-164 6-138 (275)
25 PF02117 7TM_GPCR_Sra: Serpent 96.3 0.12 2.6E-06 43.1 12.3 112 29-141 16-136 (328)
26 PF10327 7TM_GPCR_Sri: Serpent 96.2 0.039 8.4E-07 45.4 8.6 128 34-164 9-147 (303)
27 PF04789 DUF621: Protein of un 95.8 0.059 1.3E-06 43.1 7.6 102 65-167 46-151 (305)
28 PF06681 DUF1182: Protein of u 95.4 0.17 3.7E-06 38.7 8.7 100 36-140 43-151 (226)
29 PF10326 7TM_GPCR_Str: Serpent 94.3 0.039 8.5E-07 45.3 3.0 103 40-142 5-118 (307)
30 KOG4193|consensus 94.0 0.41 8.8E-06 43.2 9.0 122 39-171 325-448 (610)
31 PF02101 Ocular_alb: Ocular al 93.7 2.5 5.5E-05 35.6 12.3 95 68-168 67-172 (405)
32 PF10322 7TM_GPCR_Sru: Serpent 92.9 4 8.6E-05 33.7 12.4 65 103-168 100-164 (307)
33 PF02175 7TM_GPCR_Srb: Serpent 92.8 4 8.6E-05 32.1 13.6 48 101-148 80-127 (236)
34 PF10318 7TM_GPCR_Srh: Serpent 92.6 1.1 2.4E-05 36.6 8.9 131 36-168 6-145 (302)
35 PF10319 7TM_GPCR_Srj: Serpent 91.7 1.7 3.7E-05 35.7 8.7 131 42-172 13-154 (310)
36 PF03125 Sre: C. elegans Sre G 90.6 3.8 8.3E-05 34.7 10.2 131 32-162 25-179 (365)
37 KOG4564|consensus 82.3 34 0.00074 30.1 12.2 127 38-168 149-287 (473)
38 PF01534 Frizzled: Frizzled/Sm 78.2 39 0.00085 28.2 12.8 154 34-197 9-176 (328)
39 KOG4349|consensus 53.9 75 0.0016 22.3 7.3 22 44-65 58-79 (143)
40 PF02076 STE3: Pheromone A rec 50.5 1.4E+02 0.003 24.4 10.4 118 47-170 4-124 (283)
41 COG1230 CzcD Co/Zn/Cd efflux s 47.7 1.6E+02 0.0035 24.3 8.3 67 39-108 126-193 (296)
42 PF05393 Hum_adeno_E3A: Human 45.2 17 0.00037 23.8 1.8 11 61-71 58-68 (94)
43 PF01102 Glycophorin_A: Glycop 42.0 27 0.00059 24.6 2.5 18 46-63 75-92 (122)
44 PF11446 DUF2897: Protein of u 40.8 33 0.00072 20.4 2.4 20 38-57 6-25 (55)
45 PF09882 DUF2109: Predicted me 35.0 1.2E+02 0.0027 19.4 4.5 48 44-91 4-51 (78)
46 PF02532 PsbI: Photosystem II 34.5 78 0.0017 16.9 2.9 18 34-51 9-26 (36)
47 PF06024 DUF912: Nucleopolyhed 32.9 63 0.0014 21.8 3.1 12 53-64 81-92 (101)
48 KOG3609|consensus 28.4 3E+02 0.0065 26.2 7.4 77 85-165 322-400 (822)
49 PF14362 DUF4407: Domain of un 28.0 3.3E+02 0.0072 22.2 9.7 21 117-137 50-70 (301)
50 PF06796 NapE: Periplasmic nit 26.7 1.5E+02 0.0033 17.7 5.2 27 32-58 21-47 (56)
51 TIGR01477 RIFIN variant surfac 25.1 80 0.0017 26.6 3.0 29 37-65 311-339 (353)
52 PF10582 Connexin_CCC: Gap jun 24.1 1.4E+02 0.003 18.6 3.3 36 20-55 29-64 (67)
53 PHA03164 hypothetical protein; 22.8 1.1E+02 0.0024 19.4 2.6 19 65-83 56-74 (88)
54 PTZ00046 rifin; Provisional 22.7 96 0.0021 26.3 3.0 29 37-65 316-344 (358)
No 1
>KOG4219|consensus
Probab=99.93 E-value=1.8e-26 Score=187.32 Aligned_cols=144 Identities=28% Similarity=0.539 Sum_probs=134.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccc
Q psy16677 26 NVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFM 105 (227)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~ 105 (227)
-..+.....+.++++.++.+++++||.++++++..+|++|+.+|++++|||+||++.+++..++.........|.+|..+
T Consensus 28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~ 107 (423)
T KOG4219|consen 28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY 107 (423)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence 44566778889999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy16677 106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 171 (227)
Q Consensus 106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 171 (227)
|++..++..+...+|++++++||+|||.||.+|++.+ .+++..+..+.++|+.|++++.|..+.
T Consensus 108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~ 171 (423)
T KOG4219|consen 108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLY 171 (423)
T ss_pred eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceee
Confidence 9999999999999999999999999999999999844 799999999999999999999877443
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.92 E-value=6.5e-24 Score=176.08 Aligned_cols=140 Identities=15% Similarity=0.162 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccc
Q psy16677 28 SSIIWMTLRASIMIFIIVASIGGNLLVIVSV--MRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFM 105 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~--~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~ 105 (227)
.......+...++.+++++|++||+++++++ .+++++|++.+++++|||+||++.++ .+|...... .+.|.+|+..
T Consensus 27 ~~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~l 104 (338)
T PHA03234 27 TLKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAF 104 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhH
Confidence 4556788889999999999999999999955 45566789999999999999999975 445554433 3569999999
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy16677 106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 171 (227)
Q Consensus 106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 171 (227)
|++.+++...+.++|++++++||+|||+||++|.+++. +.++....++++|+.+++.++|++++
T Consensus 105 Ck~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~ 168 (338)
T PHA03234 105 CQCVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALF 168 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHe
Confidence 99999999999999999999999999999999987543 33444455666799999999888543
No 3
>KOG4220|consensus
Probab=99.91 E-value=1e-25 Score=182.96 Aligned_cols=162 Identities=27% Similarity=0.504 Sum_probs=142.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchh
Q psy16677 28 SSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCD 107 (227)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~ 107 (227)
......++++++..++.++.++||+++++.+.-.++|++..|+|+++||+||++.+.+..|+...+...+.|..|...|.
T Consensus 25 ~~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~Cd 104 (503)
T KOG4220|consen 25 YETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCD 104 (503)
T ss_pred ccceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHH
Confidence 34455667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCC
Q psy16677 108 VWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHP 187 (227)
Q Consensus 108 ~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (227)
++..+.++...+|++.+..||+|||+.|.+|+.|+..+|.+++..+|.+.|++++++-.|- +..|....+. .....
T Consensus 105 lWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPa-Il~WqyivGk---rTv~~ 180 (503)
T KOG4220|consen 105 LWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPA-ILFWQYIVGK---RTVPD 180 (503)
T ss_pred HHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHH-HHhhHhheee---eecCC
Confidence 9999999999999999999999999999999999999999999999999999999996544 5555443322 23445
Q ss_pred cccccc
Q psy16677 188 NICDFK 193 (227)
Q Consensus 188 ~~C~~~ 193 (227)
+.|.+.
T Consensus 181 ~eC~iQ 186 (503)
T KOG4220|consen 181 GECYIQ 186 (503)
T ss_pred CceEEE
Confidence 566643
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=172.51 Aligned_cols=140 Identities=20% Similarity=0.379 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhh
Q psy16677 29 SIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDV 108 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~ 108 (227)
......+...++.+++++|++||+++++++.+ |++|++.+++++|||++|++.+ +.+|+.+... .++|.+|+..|++
T Consensus 94 ~~~~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~-l~lPf~i~~~-~~~W~fg~~~Ck~ 170 (417)
T PHA02638 94 YPSISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFV-IDFPFIIYNE-FDQWIFGDFMCKV 170 (417)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHH-HHHHHHHHHH-hccccccccchhh
Confidence 33456778889999999999999999987654 7789999999999999999885 6778777554 3679999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy16677 109 WNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 171 (227)
Q Consensus 109 ~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 171 (227)
..++...+.+++++.++++++|||+||++|+++++..++++.+..++++|+++++.++|++++
T Consensus 171 ~~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~ 233 (417)
T PHA02638 171 ISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFI 233 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888888888899999999999999998553
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.89 E-value=4.6e-22 Score=168.66 Aligned_cols=140 Identities=19% Similarity=0.166 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcc--cchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchh
Q psy16677 30 IIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKL--RIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCD 107 (227)
Q Consensus 30 ~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l--~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~ 107 (227)
.....+..+++.+++++|++||+++++++.+.++. ++..++|++|||++|++. ++.+|..+... ...|..+...|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence 45677889999999999999999999875543332 456689999999999987 56777665432 122334568999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy16677 108 VWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCG 172 (227)
Q Consensus 108 ~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 172 (227)
+.+++..++..+|++++++||+|||++|++|.+++. .+++++...++++|+++++.++|+.++.
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~ 170 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYT 170 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999986543 4688889999999999999999875543
No 6
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.89 E-value=3.9e-22 Score=164.90 Aligned_cols=135 Identities=19% Similarity=0.401 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcch
Q psy16677 32 WMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNS 111 (227)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~ 111 (227)
...+..+++.+++++|++||+++++++.++++ +++.++++.|||++|++. ++.+|..+.... ++|.+|+..|++.++
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~ 103 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLG 103 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHH
Confidence 45677899999999999999999998877665 467899999999999987 567787665443 569999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy16677 112 LDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 170 (227)
Q Consensus 112 ~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 170 (227)
+...+..+|++++++||+|||.+|++|++++. .+.++....++++|+++++.++|+.+
T Consensus 104 ~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~ 161 (323)
T PHA02834 104 VYFVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMV 161 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHH
Confidence 98889999999999999999999999998654 35567778889999999999988743
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.88 E-value=5.5e-22 Score=164.85 Aligned_cols=139 Identities=23% Similarity=0.357 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhc
Q psy16677 30 IIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVW 109 (227)
Q Consensus 30 ~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~ 109 (227)
.....+...++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..........|..++..|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV 114 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence 44677788899999999999999999998888 8899999999999999998864 556655555567788899999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy16677 110 NSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 170 (227)
Q Consensus 110 ~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 170 (227)
.++......+|++++++|++|||++|++|++|+...+.++...+++++|+.+++.++|+..
T Consensus 115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~ 175 (335)
T PHA03087 115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILF 175 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhh
Confidence 9999999999999999999999999999999998889999999999999999999887744
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.85 E-value=2e-21 Score=153.86 Aligned_cols=143 Identities=31% Similarity=0.595 Sum_probs=122.3
Q ss_pred HHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchhhHHHHHHHHHHHHHHHH
Q psy16677 50 GNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISV 129 (227)
Q Consensus 50 gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isi 129 (227)
||+++++++.++|+++++.++++.|||++|++.++...|........+.|..+...|++..++..++...+.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999998888888877776789999999999999999999999999999999
Q ss_pred hhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccCCCccccccCCch
Q psy16677 130 DRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKKKE 197 (227)
Q Consensus 130 ~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 197 (227)
|||++|++|++|++..++++....+.++|+++++.++|+.+..+....... ....|.......
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~C~~~~~~~ 143 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDG-----SQSFCFIDFSSS 143 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTC-----CCEEEEESCSSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc
Confidence 999999999999999999999999999999999999998554332222111 134566655543
No 9
>KOG2087|consensus
Probab=99.68 E-value=2.6e-16 Score=127.00 Aligned_cols=163 Identities=20% Similarity=0.277 Sum_probs=136.6
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHh
Q psy16677 16 NVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQV 95 (227)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~ 95 (227)
...+..+...+.+......+.-+...++..+++.||.+++......+...++..+++.|||++|+++++.......+...
T Consensus 7 ~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~ 86 (363)
T KOG2087|consen 7 TCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAK 86 (363)
T ss_pred eecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHH
Confidence 34455556677788888888899999999999999999999888877777899999999999999999877776664443
Q ss_pred c-------CcccccccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 96 T-------GKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 96 ~-------~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
. +.|......|++.+|+..+....|++.++.+++||++.|++|++-++....+....+.+..|+.+++.++.|
T Consensus 87 ~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~P 166 (363)
T KOG2087|consen 87 TRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLP 166 (363)
T ss_pred HHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcc
Confidence 2 223445589999999999999999999999999999999999998877778889999999999999999999
Q ss_pred hhhhccccccc
Q psy16677 169 IMCGWYTTSEH 179 (227)
Q Consensus 169 ~~~~~~~~~~~ 179 (227)
+++...+...
T Consensus 167 -l~g~s~Y~~~ 176 (363)
T KOG2087|consen 167 -LFGISSYGAS 176 (363)
T ss_pred -ccCCCCCccc
Confidence 6665444433
No 10
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.61 E-value=2.7e-15 Score=121.41 Aligned_cols=155 Identities=16% Similarity=0.244 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCccccccc-chhhcchhhHHHHHHHH
Q psy16677 43 IIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFF-MCDVWNSLDVYFSTASI 121 (227)
Q Consensus 43 ~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~ 121 (227)
+.++|++.|.++++.+.+.+++|++.+.+..+.|++|.+.++..+.+..+....+....... .-.+.+.........+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998877777666666554333333 33444777788888999
Q ss_pred HHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhh---hccccccccccccCCCccccccCCch
Q psy16677 122 LHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC---GWYTTSEHLKYRYQHPNICDFKKKKE 197 (227)
Q Consensus 122 ~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~C~~~~~~~ 197 (227)
++.++||++|+.||..|.+|++..+.+.+..++.++|++++....++.+. ....+.+...+.+...+.|.....+.
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~~~~~~~ 161 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCGNYSWYF 161 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccchhhhHH
Confidence 99999999999999999999999999999999999999999777666442 13333334444544445777664433
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.58 E-value=2.6e-15 Score=120.19 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=99.0
Q ss_pred HHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchhhHHHHHHHHHHH
Q psy16677 45 VASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHL 124 (227)
Q Consensus 45 ~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~ 124 (227)
++|++||+.+++++.++|++|+|.++++..+|++|++.+...+|...... ++.......|-...+...++.......+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999877777766333 3335566789998888889999999999
Q ss_pred HHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHH
Q psy16677 125 CCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVI 164 (227)
Q Consensus 125 ~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~ 164 (227)
.+|++||++||+.|.+|+...+.+..........+++...
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~ 119 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFF 119 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHH
Confidence 9999999999999999999988886666555555555544
No 12
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.75 E-value=6.3e-07 Score=73.18 Aligned_cols=133 Identities=22% Similarity=0.367 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchh
Q psy16677 33 MTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSL 112 (227)
Q Consensus 33 ~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 112 (227)
......+..+..+++++|.++++..+...|++|++.+-++.-++++|++..+....... ..+...+...|.+++++
T Consensus 6 ~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~----~~~~~~~s~lC~~Qafl 81 (303)
T PF05462_consen 6 IRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTL----SPSAGENSFLCQFQAFL 81 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHh----cccCCCCCcchhhHhHH
Confidence 34556677777889999999999999999999999999999999999987754432211 12234456899999999
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy16677 113 DVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 173 (227)
Q Consensus 113 ~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 173 (227)
..++..++.+-.++||++=|+.+++... ...+.-+....++|.++++.++.|+....
T Consensus 82 iq~f~~as~lWt~~iA~nly~~~~~~~~----~~~k~e~~Y~l~~wGiPli~a~i~l~~~~ 138 (303)
T PF05462_consen 82 IQFFMLASFLWTLCIAFNLYLTFVKRYD----ELEKLEKYYHLVCWGIPLIPAVIPLIGND 138 (303)
T ss_pred HHHhhHHHHHHHHHHHHHhhheeEEcCc----cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999998886432 24566677889999999999888854433
No 13
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.69 E-value=4e-08 Score=81.16 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhhhhhhccCcccc-hhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCc---------ccccccchhhcchh
Q psy16677 43 IIVASIGGNLLVIVSVMRHRKLRI-ITNYFVVSLAFADMLVAMVAMTFNASVQVTGK---------WNFSFFMCDVWNSL 112 (227)
Q Consensus 43 ~~~~g~~gN~~~i~~~~~~~~l~~-~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~---------~~~~~~~C~~~~~~ 112 (227)
+.++|+++|++-++++ .+|.+|+ +.|.++.++|++|++..+...+.......... .........+...+
T Consensus 6 ~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 4678999999999866 5666775 89999999999999998888777775544321 01111122334456
Q ss_pred hHHHHHHHHHHHHHHHHhhheeeecCCccC--cccchhHHHHHHHHHHHHHHHHHHhhh
Q psy16677 113 DVYFSTASILHLCCISVDRYYAIVKPLKYP--INMTKRVVAFMLLNVWVSPAVISFVPI 169 (227)
Q Consensus 113 ~~~~~~~s~~~~~~isi~R~~ai~~p~~~~--~~~~~~~~~~~~~~~W~~~~~~~~~~~ 169 (227)
...+...|.|..++||+.|++++.+|+..+ ...+++.+...+.++.+.+++...+.+
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~ 143 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYF 143 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhh
Confidence 667788999999999999999999998753 456788888888888888888887763
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.69 E-value=1.5e-08 Score=82.43 Aligned_cols=125 Identities=14% Similarity=0.328 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhhhhhccCc----ccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhc--Cc--ccccccchhhcchhhHH
Q psy16677 44 IVASIGGNLLVIVSVMRHRK----LRIITNYFVVSLAFADMLVAMVAMTFNASVQVT--GK--WNFSFFMCDVWNSLDVY 115 (227)
Q Consensus 44 ~~~g~~gN~~~i~~~~~~~~----l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~--~~--~~~~~~~C~~~~~~~~~ 115 (227)
+++.++..+.+++++.+.|+ ++++.+.++.+.+++|++..+............ .+ ...+...-++.....+.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34556777778777776544 468999999999999998865554443322221 11 11222334555556667
Q ss_pred HHHHHHHHHHHHHHhhheeeecCC-ccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 116 FSTASILHLCCISVDRYYAIVKPL-KYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 116 ~~~~s~~~~~~isi~R~~ai~~p~-~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
.........+.+|++||.||++|. ++.+..++.+...++++-|+.+.+.++|-
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~ 138 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPF 138 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeee
Confidence 777888899999999999999999 77888899999999999999999998764
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.50 E-value=7e-06 Score=67.39 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhc---cCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhh
Q psy16677 32 WMTLRASIMIFIIVASIGGNLLVIVSVMR---HRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDV 108 (227)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~gN~~~i~~~~~---~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~ 108 (227)
...+..++..+.+++|++||..++.+-.. +++.-+|.+..+.+||+++++.....................+..++.
T Consensus 5 ~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (303)
T PF05296_consen 5 LEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence 34556788889999999999999977554 344456999999999999998876666666665655555666678888
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhheeeecCCcc----CcccchhHHHHHHHHHHHHHH
Q psy16677 109 WNSLDVYFSTASILHLCCISVDRYYAIVKPLKY----PINMTKRVVAFMLLNVWVSPA 162 (227)
Q Consensus 109 ~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~----~~~~~~~~~~~~~~~~W~~~~ 162 (227)
..++..+....|.|..+++++--+..|...-+. -+..=.+....++.+.++.++
T Consensus 85 ~~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~ 142 (303)
T PF05296_consen 85 IDFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISF 142 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999888888653221 111112223335566777777
No 16
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.35 E-value=7.8e-06 Score=63.00 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=63.8
Q ss_pred CcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecC
Q psy16677 62 RKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKP 138 (227)
Q Consensus 62 ~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p 138 (227)
++.+.-.+-++.||.++|++.++..+.........+.-..+...|...+++..++...+-+...+|+++-|+.|.+|
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~ 106 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRP 106 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456667799999999999987776655555554444556799999999999999999999999999999999998
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.99 E-value=4.9e-05 Score=62.53 Aligned_cols=118 Identities=8% Similarity=0.130 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhh-
Q psy16677 30 IIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDV- 108 (227)
Q Consensus 30 ~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~- 108 (227)
...+.++++.+.+.+++-.+..+.+++++.+++..|.+.+-++.-|++.|++.....-......... |...|..
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P 103 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYP 103 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCc
Confidence 4556778888888898989999999999998888789999999999999998864432222222222 3344544
Q ss_pred -----cchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHH
Q psy16677 109 -----WNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAF 152 (227)
Q Consensus 109 -----~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~ 152 (227)
.+.+...+..++....+.++++|..-+..|.........++...
T Consensus 104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~ 152 (313)
T PF10321_consen 104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYI 152 (313)
T ss_pred hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEe
Confidence 33444555667888899999999999988876555545444433
No 18
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.97 E-value=0.0001 Score=59.45 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCccccc---ccchh-hc
Q psy16677 34 TLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFS---FFMCD-VW 109 (227)
Q Consensus 34 ~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~---~~~C~-~~ 109 (227)
.+...+..+...+....|..+++.+...|+.+++...+.--..+.|.+.++...+......... +... ..... +.
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~if~~ 84 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFS-LFPEFLDYKNLIFYI 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhccccEEeeh
Confidence 3455566677778889999999988876665556666666789999999887766655443321 1111 11111 11
Q ss_pred chhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHH
Q psy16677 110 NSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVA 151 (227)
Q Consensus 110 ~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~ 151 (227)
+................||+||..|+..|..|++.++.-...
T Consensus 85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~ 126 (273)
T PF10316_consen 85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNF 126 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHH
Confidence 222233445667888899999999999999888765543333
No 19
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=97.97 E-value=3.8e-05 Score=61.40 Aligned_cols=101 Identities=19% Similarity=0.186 Sum_probs=75.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchhhHHHHHHHHHHHHHHHHhhheeee-cCCcc
Q psy16677 63 KLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV-KPLKY 141 (227)
Q Consensus 63 ~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~-~p~~~ 141 (227)
+..+|.+..+.+||++|++..+.-...........+ .+++..|++..++.-++...|+.+...+|+ |+||. .|-..
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSv--fQAItISP~~s 82 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSV--FQAITISPSNS 82 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHH--HhhEEEecCCc
Confidence 346799999999999999987665544433332222 468899999999999999999999999999 88876 55432
Q ss_pred C----cccchhHHHHHHHHHHHHHHHHHH
Q psy16677 142 P----INMTKRVVAFMLLNVWVSPAVISF 166 (227)
Q Consensus 142 ~----~~~~~~~~~~~~~~~W~~~~~~~~ 166 (227)
+ +...++.....+...|++-.+...
T Consensus 83 ~w~~lK~k~pk~i~~~~~~~Wilnlli~~ 111 (265)
T PF03402_consen 83 RWAELKVKAPKYIGPSCLFCWILNLLINI 111 (265)
T ss_pred hhhhhhhhcCCccccHHHHHHHHHHhhhc
Confidence 2 223455666678888998877754
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=97.83 E-value=0.00012 Score=59.90 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc-CcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCc-----------ccccccc
Q psy16677 38 SIMIFIIVASIGGNLLVIVSVMRH-RKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGK-----------WNFSFFM 105 (227)
Q Consensus 38 ~~~~~~~~~g~~gN~~~i~~~~~~-~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~-----------~~~~~~~ 105 (227)
++..+.+++|++.|+++++.+.++ ++.-+...+++.|-|+.|++.++....... .....+ ...|...
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHH
Confidence 356788999999999999887764 444578899999999999998755443332 222111 1235667
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
|.....+...+...+.+++..--..||..+.++-. ++++....+.+.+..++...+..
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~ 139 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFF 139 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888899999987533 66677777777777777775544
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=97.51 E-value=0.0021 Score=53.35 Aligned_cols=131 Identities=8% Similarity=0.051 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHH---HHHhcC----cccccccc
Q psy16677 33 MTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNA---SVQVTG----KWNFSFFM 105 (227)
Q Consensus 33 ~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~---~~~~~~----~~~~~~~~ 105 (227)
......+-.+++++|+..++..++.+.+++.+|...-+++....++.++.++....... ..+... +...+..-
T Consensus 16 l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~ 95 (324)
T PF10292_consen 16 LRLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYR 95 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhH
Confidence 44455566777788888888888878778888888888888888888888754433332 222221 23345567
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHH
Q psy16677 106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVI 164 (227)
Q Consensus 106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~ 164 (227)
|-.......++......+.+++.+||++|-++.-+|++. +.+.+..+..+.|++++..
T Consensus 96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~~ 153 (324)
T PF10292_consen 96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLLI 153 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHHH
Confidence 877788888999999999999999999999999888865 3445555555556665544
No 22
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.42 E-value=7e-05 Score=59.38 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchhhHHHH
Q psy16677 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFS 117 (227)
Q Consensus 38 ~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 117 (227)
.+..+.+.+++++-.+++.+....|++|+..+....||++++++..+..+.... ....+....++..|...+.+..++.
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~-~~~~~~~~~~~~~C~~~a~~~hy~~ 83 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGIS-QTFSPISTTNHCLCRAIAILLHYFF 83 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehh-hccccccccccccchhhhhHhHHHH
Confidence 445555566666666666665566777877788889999999987654432211 1111111112335999999999999
Q ss_pred HHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy16677 118 TASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 170 (227)
Q Consensus 118 ~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 170 (227)
.++.+-+.+.+++-|..+..+.. ..+++........|..+++.......
T Consensus 84 la~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~ 132 (242)
T PF00002_consen 84 LASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVA 132 (242)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeee
Confidence 99999999999999999987732 12455566677789888877665533
No 23
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=97.09 E-value=0.0018 Score=47.27 Aligned_cols=64 Identities=8% Similarity=0.158 Sum_probs=53.7
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy16677 107 DVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 170 (227)
Q Consensus 107 ~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~ 170 (227)
+....+..+++....+..++|+++|...|.+|++...+.+.+|.+..+.++.+..+..-+.|++
T Consensus 45 ~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 45 KEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred CEEeeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 3445566677888889999999999999999998766889999999999988888888778845
No 24
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=96.57 E-value=0.0043 Score=50.05 Aligned_cols=122 Identities=11% Similarity=0.211 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhhhhhccCc--c-cchhhHHHHHHHHHHHHHHHhHhhH-HHHHHhcCc-------ccccccchhhcc
Q psy16677 42 FIIVASIGGNLLVIVSVMRHRK--L-RIITNYFVVSLAFADMLVAMVAMTF-NASVQVTGK-------WNFSFFMCDVWN 110 (227)
Q Consensus 42 ~~~~~g~~gN~~~i~~~~~~~~--l-~~~~~~~l~~La~~d~l~~l~~~~~-~~~~~~~~~-------~~~~~~~C~~~~ 110 (227)
+-++.+++.+..+++++.++++ . +++.+.+...=++.|++.-+...+. ......... ........++..
T Consensus 6 ~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (275)
T PF02118_consen 6 IYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFY 85 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHH
Confidence 4456778888888888888776 3 7788888777777787764433222 121110000 012234556666
Q ss_pred hhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHH
Q psy16677 111 SLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVI 164 (227)
Q Consensus 111 ~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~ 164 (227)
++.+.+..+...+.+.++++|+-++..|.++++..++.. ...++++.+.++..
T Consensus 86 ~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~-~~~i~~i~~~p~~~ 138 (275)
T PF02118_consen 86 FLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYY-WIIIIIIFLLPFSF 138 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhh-hhheeeeeehhHHH
Confidence 777788889999999999999999999999888766544 23444444444444
No 25
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.31 E-value=0.12 Score=43.08 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHH-HHHHHHHHHHHHHhHhhHHH---HH-Hhc-C---cc
Q psy16677 29 SIIWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYF-VVSLAFADMLVAMVAMTFNA---SV-QVT-G---KW 99 (227)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~-l~~La~~d~l~~l~~~~~~~---~~-~~~-~---~~ 99 (227)
......+-..+..++.+++.++....+-.++++.-+++.+..+ +.+|..+++=. +....... .. +.. + +.
T Consensus 16 tS~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq-~~y~~~~~~~lyrsf~~~~dpC~i 94 (328)
T PF02117_consen 16 TSWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQ-ISYAIIQIWSLYRSFFYSDDPCSI 94 (328)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCeee
Confidence 3345555666777778888888888888887777777655444 44666665533 22222222 11 111 1 23
Q ss_pred cccccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCcc
Q psy16677 100 NFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKY 141 (227)
Q Consensus 100 ~~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~ 141 (227)
.+.+.-|.....+..++.....+...++.+||.+|-..|-.+
T Consensus 95 ~f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~ 136 (328)
T PF02117_consen 95 LFTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYY 136 (328)
T ss_pred EeecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 455678888888888888889999999999999998887544
No 26
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=96.15 E-value=0.039 Score=45.43 Aligned_cols=128 Identities=17% Similarity=0.173 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhc-cCcccchhhHHH---HHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhh-
Q psy16677 34 TLRASIMIFIIVASIGGNLLVIVSVMR-HRKLRIITNYFV---VSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDV- 108 (227)
Q Consensus 34 ~~~~~~~~~~~~~g~~gN~~~i~~~~~-~~~l~~~~~~~l---~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~- 108 (227)
.++...+-++++++++.|.+.++.+.. .+++.+-.++++ ....++|+-.+++..|........| +..| .+|+.
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G-~l~~~f 86 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVG-FLARYF 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEe-ehhhcC
Confidence 355678888999999999999987665 444454333333 3556799988888888877665543 3333 44444
Q ss_pred ------cchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHH
Q psy16677 109 ------WNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVI 164 (227)
Q Consensus 109 ------~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~ 164 (227)
...+..+......-.++.-=+-|+.+|.+..+.+. .++...........+..+..
T Consensus 87 ~i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~ 147 (303)
T PF10327_consen 87 GISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFI 147 (303)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHH
Confidence 22223333334444444445678999988765332 23333333344444444443
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=95.79 E-value=0.059 Score=43.06 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=69.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhHhhHHHHHHh----cCcccccccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCc
Q psy16677 65 RIITNYFVVSLAFADMLVAMVAMTFNASVQV----TGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLK 140 (227)
Q Consensus 65 ~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~----~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~ 140 (227)
+-+..+++..|.++-++...+-+...++..+ ..+ ......-.+..+..-++.++-.++-..+|++|......-..
T Consensus 46 ~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~-~~~s~~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~ 124 (305)
T PF04789_consen 46 PMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKE-FVQSELFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNL 124 (305)
T ss_pred cchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHH-HhccchhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhh
Confidence 3478999999999988776554443332222 112 22233445566677788889999999999999987764333
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHh
Q psy16677 141 YPINMTKRVVAFMLLNVWVSPAVISFV 167 (227)
Q Consensus 141 ~~~~~~~~~~~~~~~~~W~~~~~~~~~ 167 (227)
-.+...++...+-...+|++++.....
T Consensus 125 t~~~F~s~~iyiWL~~vWils~~v~~~ 151 (305)
T PF04789_consen 125 TDKVFESPVIYIWLLLVWILSIGVVYS 151 (305)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 344556778888899999999887543
No 28
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=95.44 E-value=0.17 Score=38.68 Aligned_cols=100 Identities=12% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcccchh--hHHHHHHHHHHHHHHHhHhhHHHHHH------hcC-cccccccch
Q psy16677 36 RASIMIFIIVASIGGNLLVIVSVMRHRKLRIIT--NYFVVSLAFADMLVAMVAMTFNASVQ------VTG-KWNFSFFMC 106 (227)
Q Consensus 36 ~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~--~~~l~~La~~d~l~~l~~~~~~~~~~------~~~-~~~~~~~~C 106 (227)
....=.++-..+.+.+.+.+..++++|++.... .+. .+-+..-++.+|..+.+. ..+ +.......|
T Consensus 43 ri~~e~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIv-----FaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vC 117 (226)
T PF06681_consen 43 RITVEFIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIV-----FATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVC 117 (226)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEE-----EeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 344445566667777777776676666532111 111 111222233334433222 112 344577899
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHhhheeeecCCc
Q psy16677 107 DVWNSLDVYFSTASILHLCCISVDRYYAIVKPLK 140 (227)
Q Consensus 107 ~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~ 140 (227)
.+..-+...........-+++|++||+.|++-.+
T Consensus 118 Sflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 118 SFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred hHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 8877665555555556666899999999987544
No 29
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=94.31 E-value=0.039 Score=45.31 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhcc-CcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcC----------cccccccchhh
Q psy16677 40 MIFIIVASIGGNLLVIVSVMRH-RKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTG----------KWNFSFFMCDV 108 (227)
Q Consensus 40 ~~~~~~~g~~gN~~~i~~~~~~-~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~----------~~~~~~~~C~~ 108 (227)
-.+.++++++.|++.++.+.++ ++.-...-.++...|+.|++.+++-....-..+..+ .+..+....+.
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 3456788999999999987754 333345667777888888888755443332222111 11122223333
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhheeeecCCccC
Q psy16677 109 WNSLDVYFSTASILHLCCISVDRYYAIVKPLKYP 142 (227)
Q Consensus 109 ~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~ 142 (227)
...+...+...+...++.-=+.||.++++|.+-+
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~ 118 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLR 118 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchhhc
Confidence 3334444444555555555669999999997543
No 30
>KOG4193|consensus
Probab=94.04 E-value=0.41 Score=43.20 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCccccccc--chhhcchhhHHH
Q psy16677 39 IMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFF--MCDVWNSLDVYF 116 (227)
Q Consensus 39 ~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~--~C~~~~~~~~~~ 116 (227)
+..+-++++++.=.+.+++....|++++-.+....||+++=++.-+ .++.+.|..+.. .|...+++..++
T Consensus 325 i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l--------~fL~~~~~~~~~~~~C~~~a~llhff 396 (610)
T KOG4193|consen 325 LSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL--------LFLLGIDRTSTSVVLCIAAAILLHFF 396 (610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--------HHhcccccccCcccccHHHHHHHHHH
Confidence 3344445555555555555555555665557777788877222211 122233333322 699999999999
Q ss_pred HHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q psy16677 117 STASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 171 (227)
Q Consensus 117 ~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 171 (227)
..+..+-+..++++=|+.++.-+ ....+++........|...++........
T Consensus 397 ~LaaF~Wm~leg~hl~~~~v~vf---~~~~~~~~l~~~~~gwg~Pavvv~Isa~~ 448 (610)
T KOG4193|consen 397 FLAAFFWMLLEGFHLYLLLVEVF---RSRPRRRKLLYSLYGWGVPAVVVGVSALV 448 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHhhhhHHHHhheeEE
Confidence 99999999999998888555433 23355555555568888888776555333
No 31
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=93.73 E-value=2.5 Score=35.62 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHhHhhHHHHHHhcCccc-----------ccccchhhcchhhHHHHHHHHHHHHHHHHhhheeee
Q psy16677 68 TNYFVVSLAFADMLVAMVAMTFNASVQVTGKWN-----------FSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIV 136 (227)
Q Consensus 68 ~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~-----------~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~ 136 (227)
..-.+..|+++|++.++-.+.-........+.. .....|........+++.++.+-..+-++|-|+.+.
T Consensus 67 ~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~ 146 (405)
T PF02101_consen 67 SRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIR 146 (405)
T ss_pred CchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 356889999999999866555544433322111 123688887777778888999999999999999885
Q ss_pred cCCccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 137 KPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 137 ~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
..- .+......-..+|..+.+++.--
T Consensus 147 ~~a------g~~~~~lYH~~aWgl~~lL~~~G 172 (405)
T PF02101_consen 147 RSA------GRSTIWLYHMMAWGLPALLCAEG 172 (405)
T ss_pred ccC------CCcchhHHHHHHHHHHHHHHHhc
Confidence 421 22334456677898888887555
No 32
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=92.92 E-value=4 Score=33.73 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=48.6
Q ss_pred ccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 103 FFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 103 ~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
+..=++..++.+.+.+.+.+.-++.++-|...+..|-.+++. ..+-......++.+++++.+.|-
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~ 164 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPM 164 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHc
Confidence 355677778888899999999999999999999999876443 34444556666777777776543
No 33
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.75 E-value=4 Score=32.13 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=39.6
Q ss_pred ccccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchh
Q psy16677 101 FSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKR 148 (227)
Q Consensus 101 ~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~ 148 (227)
.+...++.......+.+..+.+.-..+++||+.|....-+|++..+.-
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r~~L 127 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTRTLL 127 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCceee
Confidence 355677888888888999999999999999999999988888765443
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=92.55 E-value=1.1 Score=36.60 Aligned_cols=131 Identities=8% Similarity=0.119 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcc-CcccchhhHHHHHHH----HHHHHHHHhHhhHHHHHHhcC----cccccccch
Q psy16677 36 RASIMIFIIVASIGGNLLVIVSVMRH-RKLRIITNYFVVSLA----FADMLVAMVAMTFNASVQVTG----KWNFSFFMC 106 (227)
Q Consensus 36 ~~~~~~~~~~~g~~gN~~~i~~~~~~-~~l~~~~~~~l~~La----~~d~l~~l~~~~~~~~~~~~~----~~~~~~~~C 106 (227)
+....-++.++++.-|++.++++.++ ++..+..-..+.++. +.|+..+++..|........+ -...-..-.
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 34556677788889999999877664 333344444444444 467777777666655333322 111112334
Q ss_pred hhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 107 DVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 107 ~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
.++.++..........++..+=-+||.++..+-+ +...++.-.......++.+.+..+|.
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~--~~~~~~~r~~~~~~~y~~~~~~~~~~ 145 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS--RSLWKKIRIIFIIFNYIIAFLFFIPI 145 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc--cccchhhHHHHHHHHHHHHHHHHHHH
Confidence 5555666666667777888888899999986543 11122223333444455555555555
No 35
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=91.68 E-value=1.7 Score=35.73 Aligned_cols=131 Identities=15% Similarity=0.091 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhhhhccCccc-chhhHHHHHHHHHHHHHHHhHhhHHHHHH---------hcCccccccc-chhhcc
Q psy16677 42 FIIVASIGGNLLVIVSVMRHRKLR-IITNYFVVSLAFADMLVAMVAMTFNASVQ---------VTGKWNFSFF-MCDVWN 110 (227)
Q Consensus 42 ~~~~~g~~gN~~~i~~~~~~~~l~-~~~~~~l~~La~~d~l~~l~~~~~~~~~~---------~~~~~~~~~~-~C~~~~ 110 (227)
+.++++.+.|-+-++.+..+|+.+ -...+++..-|+-|++..+.-+...+..+ ..++|..+.. .-....
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l 92 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL 92 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence 556778899999999888877654 47788899999999988765433222111 1122222111 111111
Q ss_pred hhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy16677 111 SLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCG 172 (227)
Q Consensus 111 ~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 172 (227)
...-.+...|-..+..==+.||+++.+|-.-++...+......+..+-.........-.+..
T Consensus 93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~gl~~s~~~~~~h~~~W~~ic~~~~ 154 (310)
T PF10319_consen 93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYGLIGSILYCLFHFASWHVICYFCM 154 (310)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11112222333344444569999999986555554454444444444344444433333333
No 36
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=90.58 E-value=3.8 Score=34.66 Aligned_cols=131 Identities=8% Similarity=0.150 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHH---HHHHhHhhHHHHHHhcCc--------c-
Q psy16677 32 WMTLRASIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADM---LVAMVAMTFNASVQVTGK--------W- 99 (227)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~---l~~l~~~~~~~~~~~~~~--------~- 99 (227)
...+..++-.++.+++..-....+.++.+.|..|.-.+.+.......-+ +.=+...|+.......++ |
T Consensus 25 ~~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~ 104 (365)
T PF03125_consen 25 FYIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWW 104 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhh
Confidence 3445555666666666666666677788888888766666555444333 222333344332221110 1
Q ss_pred cc------------cccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHH
Q psy16677 100 NF------------SFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPA 162 (227)
Q Consensus 100 ~~------------~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~ 162 (227)
.. +...--+.+++..-......+.+.++++||.+|-...-.|++..+..-...++...-++++
T Consensus 105 t~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I~~~l~~~~~~~~~ 179 (365)
T PF03125_consen 105 TDDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWISILLIIFSQIFSI 179 (365)
T ss_pred ccCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Confidence 11 1122333445555566677899999999999999888788875444333344443333333
No 37
>KOG4564|consensus
Probab=82.35 E-value=34 Score=30.09 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCc------------ccccccc
Q psy16677 38 SIMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGK------------WNFSFFM 105 (227)
Q Consensus 38 ~~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~------------~~~~~~~ 105 (227)
+++.+-..++++.=++.+.++..-|++|-..|++=.||-++=++-++..+.........+. -..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3455555555554455555555667888889999999999988887666555543332211 1245678
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhh
Q psy16677 106 CDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 168 (227)
Q Consensus 106 C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 168 (227)
|+....+...+..++.+-+.+=.+.=|-.++..+.. .++.-.....+.|...+++..+=
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~W 287 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVW 287 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhH
Confidence 999888888888888877777777555444433321 35556667777888877775443
No 38
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=78.18 E-value=39 Score=28.24 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCc-ccchhhHHHHHHHHHHHHHHHhHhhHHHH--HHhc-Cc----------c
Q psy16677 34 TLRASIMIFIIVASIGGNLLVIVSVMRHRK-LRIITNYFVVSLAFADMLVAMVAMTFNAS--VQVT-GK----------W 99 (227)
Q Consensus 34 ~~~~~~~~~~~~~g~~gN~~~i~~~~~~~~-l~~~~~~~l~~La~~d~l~~l~~~~~~~~--~~~~-~~----------~ 99 (227)
...-....+...+..+.+++.+.++..+++ .+-| ..-++-++++-.+.++..+.-.+. .... +. .
T Consensus 9 ~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yP-erpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~ 87 (328)
T PF01534_consen 9 EFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYP-ERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQD 87 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc-cchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeec
Confidence 333444455555555666666666555444 2322 333444555444444332222221 0000 00 1
Q ss_pred cccccchhhcchhhHHHHHHHHHHHHHHHHhhheeeecCCccCcccchhHHHHHHHHHHHHHHHHHHhhhhhhccccccc
Q psy16677 100 NFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEH 179 (227)
Q Consensus 100 ~~~~~~C~~~~~~~~~~~~~s~~~~~~isi~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~ 179 (227)
..+...|.+...+.+++..++..--+.+++.=|++....-.+.. -.++....-.+.|.++++..+..+..+....+
T Consensus 88 ~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD-- 163 (328)
T PF01534_consen 88 GLENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALRKVDGD-- 163 (328)
T ss_pred CCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhcccccc--
Confidence 22457899999888888887776667777777777654322222 23555666888999999998776554332222
Q ss_pred cccccCCCccccccCCch
Q psy16677 180 LKYRYQHPNICDFKKKKE 197 (227)
Q Consensus 180 ~~~~~~~~~~C~~~~~~~ 197 (227)
.-.+.|.+.....
T Consensus 164 -----~ltGiC~Vg~~~~ 176 (328)
T PF01534_consen 164 -----ELTGICFVGNQNP 176 (328)
T ss_pred -----cccceeEEeCCCH
Confidence 2345677665443
No 39
>KOG4349|consensus
Probab=53.87 E-value=75 Score=22.33 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhhccCccc
Q psy16677 44 IVASIGGNLLVIVSVMRHRKLR 65 (227)
Q Consensus 44 ~~~g~~gN~~~i~~~~~~~~l~ 65 (227)
.++-+..-++.++.++|+|.-|
T Consensus 58 ~fih~~A~ilalFTLRkHkygr 79 (143)
T KOG4349|consen 58 MFIHLGATILALFTLRKHKYGR 79 (143)
T ss_pred HHHHhhHHHHHHHHhhcCccce
Confidence 3456667778888887776644
No 40
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=50.46 E-value=1.4e+02 Score=24.41 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=59.1
Q ss_pred HHHHHHHhhhhhhccCccc-chhhHHHHHHHHHHHHHHHhHhhHHHHHHhcCcccccccchhhcchhhHHHHHHHHHHHH
Q psy16677 47 SIGGNLLVIVSVMRHRKLR-IITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLC 125 (227)
Q Consensus 47 g~~gN~~~i~~~~~~~~l~-~~~~~~l~~La~~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~ 125 (227)
+.+|..+.+.-+.-+-+-+ .+.-.++.-+.++++...+-.+...- +. ..|.. ..|.+..-+.......-.....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~~-n~--~~~~~--~wCDI~~kl~~~~~~g~~~a~l 78 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWRD-ND--INWWP--VWCDISTKLIIGSSVGIPAASL 78 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcCC-CC--CccCc--eeeeehHHHHHHHHHHHHHHHH
Confidence 4445555554433332223 36677788888888876532211110 00 11222 7899987766555555444444
Q ss_pred HHHHhhheeeecCCccCc--ccchhHHHHHHHHHHHHHHHHHHhhhh
Q psy16677 126 CISVDRYYAIVKPLKYPI--NMTKRVVAFMLLNVWVSPAVISFVPIM 170 (227)
Q Consensus 126 ~isi~R~~ai~~p~~~~~--~~~~~~~~~~~~~~W~~~~~~~~~~~~ 170 (227)
+|+-.=+ .|..+..... ...+|+...=...++.+.++....-++
T Consensus 79 cI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yi 124 (283)
T PF02076_consen 79 CIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYI 124 (283)
T ss_pred HHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444222 2333322111 113555665666777777766655433
No 41
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=47.70 E-value=1.6e+02 Score=24.30 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCcccchhhHHHHHHHH-HHHHHHHhHhhHHHHHHhcCcccccccchhh
Q psy16677 39 IMIFIIVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAF-ADMLVAMVAMTFNASVQVTGKWNFSFFMCDV 108 (227)
Q Consensus 39 ~~~~~~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~-~d~l~~l~~~~~~~~~~~~~~~~~~~~~C~~ 108 (227)
.+.++.++|++.|.+..+.+.+. + .+..|.=-..|.+ +|.+..+......+...+.+ |..-++.+.+
T Consensus 126 ~ml~va~~GL~vN~~~a~ll~~~-~-~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~-w~~~Dpi~si 193 (296)
T COG1230 126 GMLVVAIIGLVVNLVSALLLHKG-H-EENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTG-WSWLDPILSI 193 (296)
T ss_pred chHHHHHHHHHHHHHHHHHhhCC-C-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccchHHHH
Confidence 45667788999999999988776 1 2234444444544 89988766655555555554 5545554433
No 42
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=45.21 E-value=17 Score=23.77 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=5.5
Q ss_pred cCcccchhhHH
Q psy16677 61 HRKLRIITNYF 71 (227)
Q Consensus 61 ~~~l~~~~~~~ 71 (227)
+++-|+|.+--
T Consensus 58 RkrsRrPIYrP 68 (94)
T PF05393_consen 58 RKRSRRPIYRP 68 (94)
T ss_pred hhhccCCcccc
Confidence 44445665543
No 43
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.00 E-value=27 Score=24.59 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=7.8
Q ss_pred HHHHHHHHhhhhhhccCc
Q psy16677 46 ASIGGNLLVIVSVMRHRK 63 (227)
Q Consensus 46 ~g~~gN~~~i~~~~~~~~ 63 (227)
.|++|=++.|..++++++
T Consensus 75 aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344554444443334333
No 44
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=40.85 E-value=33 Score=20.41 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy16677 38 SIMIFIIVASIGGNLLVIVS 57 (227)
Q Consensus 38 ~~~~~~~~~g~~gN~~~i~~ 57 (227)
.++.++.+--++||+.++--
T Consensus 6 wlIIviVlgvIigNia~LK~ 25 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAALKY 25 (55)
T ss_pred hHHHHHHHHHHHhHHHHHHH
Confidence 34445555557899988843
No 45
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=35.03 E-value=1.2e+02 Score=19.36 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhhhhccCcccchhhHHHHHHHHHHHHHHHhHhhHHH
Q psy16677 44 IVASIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNA 91 (227)
Q Consensus 44 ~~~g~~gN~~~i~~~~~~~~l~~~~~~~l~~La~~d~l~~l~~~~~~~ 91 (227)
.+.|+++=...+-++..+.+.++-.++-..|-+++-++....--|+..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 445666666666667777777888888888999988887655555544
No 46
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=34.49 E-value=78 Score=16.91 Aligned_cols=18 Identities=6% Similarity=0.036 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy16677 34 TLRASIMIFIIVASIGGN 51 (227)
Q Consensus 34 ~~~~~~~~~~~~~g~~gN 51 (227)
+...+++..++++|.+.|
T Consensus 9 y~vV~ffv~LFifGflsn 26 (36)
T PF02532_consen 9 YTVVIFFVSLFIFGFLSN 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhccccCC
Confidence 344555566666776655
No 47
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=32.93 E-value=63 Score=21.84 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=6.0
Q ss_pred HhhhhhhccCcc
Q psy16677 53 LVIVSVMRHRKL 64 (227)
Q Consensus 53 ~~i~~~~~~~~l 64 (227)
+.-+++.|.|+.
T Consensus 81 IyYFVILRer~~ 92 (101)
T PF06024_consen 81 IYYFVILRERQK 92 (101)
T ss_pred heEEEEEecccc
Confidence 334555565553
No 48
>KOG3609|consensus
Probab=28.43 E-value=3e+02 Score=26.19 Aligned_cols=77 Identities=10% Similarity=-0.035 Sum_probs=40.5
Q ss_pred hHhhHHHHHHhcCcccccccch-hhcchhhHHHHHHHHHHHHHHHH-hhheeeecCCccCcccchhHHHHHHHHHHHHHH
Q psy16677 85 VAMTFNASVQVTGKWNFSFFMC-DVWNSLDVYFSTASILHLCCISV-DRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPA 162 (227)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~~s~~~~~~isi-~R~~ai~~p~~~~~~~~~~~~~~~~~~~W~~~~ 162 (227)
...++.+.+.+......|...| .+.-|+....++...+.++.++. +++. .+. ++........+=..+..|+.++
T Consensus 322 ~~P~~~l~yllap~S~~G~~~r~PfmKFi~H~~Sy~~FL~LL~l~s~~~~~---~~~-~~~~g~~p~~vE~li~~wV~G~ 397 (822)
T KOG3609|consen 322 CFPMPSLVYLLAPMSRKGTTMRKPFMKFIAHITSYLVFLILLILASLIGFY---FAW-TDSRGVTPQALEILIYLWVMGL 397 (822)
T ss_pred HhHHHHHHHHhCCCCcccchhhchHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhh-hcccCCCCcHHHHHHHHHHHHH
Confidence 4444445555555555555555 34445555555555555444443 3333 221 3333345555556777888888
Q ss_pred HHH
Q psy16677 163 VIS 165 (227)
Q Consensus 163 ~~~ 165 (227)
+++
T Consensus 398 iw~ 400 (822)
T KOG3609|consen 398 IWE 400 (822)
T ss_pred HHH
Confidence 776
No 49
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=28.03 E-value=3.3e+02 Score=22.18 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhheeeec
Q psy16677 117 STASILHLCCISVDRYYAIVK 137 (227)
Q Consensus 117 ~~~s~~~~~~isi~R~~ai~~ 137 (227)
...-+|.++.+.+||++...-
T Consensus 50 ~~glvwgl~I~~lDR~ivss~ 70 (301)
T PF14362_consen 50 PFGLVWGLVIFNLDRFIVSSI 70 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344778899999999996654
No 50
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=26.65 E-value=1.5e+02 Score=17.73 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy16677 32 WMTLRASIMIFIIVASIGGNLLVIVSV 58 (227)
Q Consensus 32 ~~~~~~~~~~~~~~~g~~gN~~~i~~~ 58 (227)
...+...++.++.+..+-|-.++++..
T Consensus 21 flfl~~~l~PiL~v~~Vg~YGF~VWm~ 47 (56)
T PF06796_consen 21 FLFLAVVLFPILAVAFVGGYGFIVWMY 47 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777777777777654
No 51
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.10 E-value=80 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccc
Q psy16677 37 ASIMIFIIVASIGGNLLVIVSVMRHRKLR 65 (227)
Q Consensus 37 ~~~~~~~~~~g~~gN~~~i~~~~~~~~l~ 65 (227)
+++.+++.++-++.-.++|+.++|.||.+
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44566677777777778888888877754
No 52
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=24.12 E-value=1.4e+02 Score=18.58 Aligned_cols=36 Identities=25% Similarity=0.050 Sum_probs=27.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16677 20 STSPDENVSSIIWMTLRASIMIFIIVASIGGNLLVI 55 (227)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~~~i 55 (227)
+...++-.+.+.+..++..++..+.++.++.|+.=+
T Consensus 29 p~~VdCfVSRPtEKtIfl~fM~~~s~vsi~L~l~El 64 (67)
T PF10582_consen 29 PNTVDCFVSRPTEKTIFLIFMFAVSCVSILLNLAEL 64 (67)
T ss_dssp SSSEEEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEeCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566667888889999999999999998887643
No 53
>PHA03164 hypothetical protein; Provisional
Probab=22.80 E-value=1.1e+02 Score=19.43 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=12.7
Q ss_pred cchhhHHHHHHHHHHHHHH
Q psy16677 65 RIITNYFVVSLAFADMLVA 83 (227)
Q Consensus 65 ~~~~~~~l~~La~~d~l~~ 83 (227)
++-..+.+.+||++=+++.
T Consensus 56 ktftFlvLtgLaIamILfi 74 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFI 74 (88)
T ss_pred heeehHHHHHHHHHHHHHH
Confidence 4455666778888877664
No 54
>PTZ00046 rifin; Provisional
Probab=22.66 E-value=96 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccc
Q psy16677 37 ASIMIFIIVASIGGNLLVIVSVMRHRKLR 65 (227)
Q Consensus 37 ~~~~~~~~~~g~~gN~~~i~~~~~~~~l~ 65 (227)
+++.+++.++-++.-.++|+.++|+||.+
T Consensus 316 aIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 316 AIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34566666677777777888888877754
Done!