RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16677
(227 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 81.2 bits (199), Expect = 1e-18
Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 7/193 (3%)
Query: 3 DSSNLFDASMPGYNVTDSTS-----PDENVSSIIWMTLRASIMIFIIVASIGGNLLVIVS 57
+ + + +P N T P ++ ++ A+ M +I+ N L +
Sbjct: 2 NGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYV 61
Query: 58 VMRHRKLRIITNYFVVSLAFADMLVAMVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFS 117
++H+KLR NY +++LA AD+ + T + G + F C++
Sbjct: 62 TVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
Query: 118 TASILHLCCISVDRYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 177
++ L ++++RY + KP+ + + A+ P + GW
Sbjct: 122 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGV--AFTWVMALACAAPPLVGWSRYI 179
Query: 178 EHLKYRYQHPNIC 190
+
Sbjct: 180 PEGMQCSCGIDYY 192
>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A,
IP3K A {Human (Homo sapiens) [TaxId: 9606]}
Length = 276
Score = 32.7 bits (74), Expect = 0.028
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 160 SPAVISFVPIMCGW-------YTTSEHLKYRYQHPNICDFKKKKEEEKKEAKKKTKKKEE 212
+ A+ VP G Y + L + P + D K +E K +++ +
Sbjct: 39 ADALRGCVPAFHGVVERDGESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPK 98
Query: 213 EKKKK-TRMRG 222
+K +M
Sbjct: 99 LRKDMYKKMLA 109
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 31.6 bits (72), Expect = 0.050
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 190 CDFKKKKE--EEKKEAKKKTKKKEEEKKKKTRMRGGIE 225
CDF K + + +KE KK+ +EKK+ R E
Sbjct: 92 CDFTKMFDYFQLQKEQKKQLTS--QEKKQIRLEREKFE 127
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 31.2 bits (71), Expect = 0.071
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 190 CDFKKKKE--EEKKEAKKKTKKKEEEKKKKTRMRGGIE 225
CDF + + + + EA+K+ K EEK K +
Sbjct: 100 CDFTQMSQYFKAQTEARKQMSK--EEKLKIKEENEKLL 135
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 31.1 bits (70), Expect = 0.11
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 189 ICDFKK--KKEEEKKEAKKKTKKKEEEKKKKTRMR 221
F + K+ ++++E ++K ++ + K+K + R
Sbjct: 297 RNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis
familiaris) [TaxId: 9615]}
Length = 249
Score = 29.1 bits (65), Expect = 0.32
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 160 SPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKKKEEEKKEAKKKTKKKEEEKKKKT 218
+P I F P CG H +R+++P EEK + K KKT
Sbjct: 124 TPYTIMFGPDKCGE-DYKLHFIFRHKNPKT-----GVYEEKHAKRPDADLKTYFTDKKT 176
Score = 26.0 bits (57), Expect = 3.2
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 131 RYYAIVKPLKYPINMTKR--VVAFMLL---NVWVSPAVISFVPIMCGWYTTSEHLKYRYQ 185
+++AI L P + +V + + + A + + H K Y
Sbjct: 68 KHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYT 127
Query: 186 ---HPNICDFKKKKEEEKKEAKKKTKKKEEEKKKKTRMR 221
P+ C K + KT EE+ K+
Sbjct: 128 IMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDAD 166
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 28.3 bits (63), Expect = 0.36
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 193 KKKKEEEKKEAKKKT--KKKEEEKKKKTRMRGGIERQ 227
K + +E +EA ++ +E+ K +R E +
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 26.8 bits (59), Expect = 1.3
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 193 KKKKEEEKKEAKKKTKKKEEEKK 215
++ +EK + ++ +K +E K+
Sbjct: 116 MLERLQEKDKHAEEVRKNKELKE 138
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 193 KKKKEEEKKEAKKKTKKKEEEK------KKKTRMRGGIERQ 227
+K EE K K+K +K ++ + +ER
Sbjct: 80 IQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERL 120
Score = 26.4 bits (58), Expect = 2.2
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 193 KKKKEEEKKEAKKKTKKKEEEKKKK 217
+K +E E + + ++ E E +K
Sbjct: 58 RKYQEAELLKHLAEKREHEREVIQK 82
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
subunit I {Thermus thermophilus [TaxId: 274]}
Length = 549
Score = 28.8 bits (64), Expect = 0.53
Identities = 18/148 (12%), Positives = 45/148 (30%), Gaps = 5/148 (3%)
Query: 32 WMTLRASIMIFIIVA-SIGGNLLVIVSVMRHRKLRIITNYFVVSLAFADMLVAMVAMTFN 90
+TL + + ++ + + + + + + +AF ++VA + + N
Sbjct: 55 GLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWLSWWMAFIGLVVAALPLLAN 114
Query: 91 ASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVK--PLKYPINMTKR 148
+ + L S I +D + P K +T
Sbjct: 115 EA--TVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYM 172
Query: 149 VVAFMLLNVWVSPAVISFVPIMCGWYTT 176
V F L+ S ++ + ++
Sbjct: 173 AVVFWLMWFLASLGLVLEAVLFLLPWSF 200
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 27.1 bits (60), Expect = 0.77
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 194 KKKEEEKKEAKKKTKKKEEEKKK 216
K+ E E K+ EK++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 3.3
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 195 KKEEEKKEAKKKTKKKEEEKKKK 217
K+ + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 24.0 bits (52), Expect = 7.6
Identities = 1/29 (3%), Positives = 7/29 (24%)
Query: 192 FKKKKEEEKKEAKKKTKKKEEEKKKKTRM 220
++ + K+ + +
Sbjct: 72 LWNHGILKEVVPEGYEMKRVGDYYVFEKR 100
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 27.0 bits (59), Expect = 1.7
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 183 RYQHPNICDFKKKKEEEKKEAKKKTKKKEEEKKK 216
R ++ +K E ++ + K+ ++ K +
Sbjct: 239 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 272
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 26.1 bits (57), Expect = 2.0
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 173 WYTTSEHLKYRYQHPNICD---FKKKKEEEKKEAKKKTKKKEEEKKKKTRMRG 222
W S+ K Y ++ + + ++ +++ ++K + G
Sbjct: 52 WKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISG 104
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 26.5 bits (58), Expect = 2.4
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 193 KKKKEEEKKEAKKKTKKKEEEKKK 216
+++ EE+ K K EE+ +
Sbjct: 219 QEEVEEKNILEKVKAAMTEEDLAE 242
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 25.6 bits (56), Expect = 2.6
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 169 IMCGWYTTSEHLKYRYQHPNICD---FKKKKEEEKKEAKKKTKKKEEEKKKKTRMRG 222
I W S+ K Y+ +K + K + + +E R G
Sbjct: 41 IGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSG 97
>d1giqa1 d.166.1.1 (A:3-209) Enzymatic component (Ia) of iota-toxin
{Clostridium perfringens [TaxId: 1502]}
Length = 207
Score = 26.4 bits (58), Expect = 2.7
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 191 DFKKKKEEEKKEAKKKTKKKEE 212
DF K KE + KK+ ++ E+
Sbjct: 6 DFLKDKENAIQWEKKEAERVEK 27
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 24.9 bits (54), Expect = 3.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 196 KEEEKKEAKKKTKKKEEEKK 215
K E KK T KEE KK
Sbjct: 41 KWHNDAENKKCTLDKEEAKK 60
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 26.1 bits (57), Expect = 4.3
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 188 NICDFKKKKEEEKKEAKKKTKKKEEEKKKKTR 219
NIC + EE ++E + K R
Sbjct: 357 NICSDDELGSEEDGFDGATAAARKEVIRNKIR 388
>d1u60a_ e.3.1.2 (A:) Probable glutaminase YbaS {Escherichia coli
[TaxId: 562]}
Length = 309
Score = 25.9 bits (57), Expect = 4.5
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 6/31 (19%)
Query: 100 NFSFFMCDVWNSLDVYFSTASILHLCCISVD 130
+ + CD + DVY C ++
Sbjct: 176 SAGYLYCDAMEACDVYT------RQCSTLLN 200
>d2c3fa1 b.108.1.5 (A:7-336) Phage-associated hyaluronidase, HylP1
{Streptococcus pyogenes [TaxId: 1314]}
Length = 330
Score = 25.8 bits (56), Expect = 4.7
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 174 YTTSEHLKYRYQHPNICDFKKKKEEEKKEAKKKTKK----KEEEK---KKKTRMRGGI 224
Y + PNI K E +K +K K+ K E K KK ++GG+
Sbjct: 48 YISPLDYNLLTNKPNIDGLATKVETAQKLQQKADKETVYTKAESKQELDKKLNLKGGV 105
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease
protein MetI {Escherichia coli [TaxId: 562]}
Length = 203
Score = 25.4 bits (55), Expect = 4.7
Identities = 18/147 (12%), Positives = 51/147 (34%), Gaps = 8/147 (5%)
Query: 31 IWMTLRASIMIFIIVASIGGNLLVIVSVMRHRKL-------RIITNYFVVSLAFADMLVA 83
+W TL + + IG + V++ V R ++ R ++ + + +++
Sbjct: 8 VWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILL 67
Query: 84 MVAMTFNASVQVTGKWNFSFFMCDVWNSLDVYFSTASILHLCCISVDRYYAIVKPLKYPI 143
+ + F + T + + + L + + P+
Sbjct: 68 VWMIPFTRVIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA-TPM 126
Query: 144 NMTKRVVAFMLLNVWVSPAVISFVPIM 170
+ ++V+ L V+ A I+ + ++
Sbjct: 127 QIVRKVLLPEALPGLVNAATITLITLV 153
>d2plga1 d.198.1.2 (A:3-154) Uncharacterized protein Tll0839
{Synechococcus elongatus [TaxId: 32046]}
Length = 152
Score = 25.2 bits (55), Expect = 5.6
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MTDSSNLFDASMPGYNVTDSTSPDENVSSIIWMTLRASIMIFIIVASIGGN--LLVIVSV 58
+ ++ + + + + D+ + S IWM S +F+ ++ L + V
Sbjct: 19 LENAVEIIETVISSLHQGDAPLVGQTDSGKIWMFRYGSAEVFVQLSGHTEEDFLTIWSPV 78
Query: 59 MRH 61
+
Sbjct: 79 LPL 81
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 24.0 bits (52), Expect = 6.2
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 193 KKKKEEEKKEAKKKTKKKEEEKKKK 217
K K K K K + +
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEAN 40
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 24.0 bits (52), Expect = 6.2
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 194 KKKEEEKKEAKKKTKKKEEEKKKKTRMRG 222
+ K + KKE ++ + K ++
Sbjct: 8 QTKIDAKKEQLADARRDLKSAKADAKVMK 36
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 25.5 bits (56), Expect = 6.5
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 183 RYQHPNICDFKKKKEEEKKEAKKKTKKKEEEKKKKT 218
R + +F +E + K+ E+ +
Sbjct: 247 REKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRV 282
>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus
thermophilus [TaxId: 274]}
Length = 91
Score = 24.4 bits (53), Expect = 6.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 195 KKEEEKKEAKKKTKKKEEEKKKKTRMRGG 223
K+ E+K ++ K+ E +R G
Sbjct: 1 KRLAERKAEAERLKEILENLTLTIPVRAG 29
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 25.0 bits (53), Expect = 7.5
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 191 DFKKKKEEEKKEAKKKTKKKEEEKKKKTRMRGGIERQ 227
K K++E+ K E ++KKK +
Sbjct: 13 QVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKD 49
>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 94
Score = 24.0 bits (52), Expect = 7.8
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 195 KKEEEKKEAKKKTKKKEEEKKKKTRMRGG 223
++ E+ KK K++ E+ + G
Sbjct: 1 RQAAEELANAKKLKEQLEKLTVTIPAKAG 29
>d1qs1a1 d.166.1.1 (A:60-264) Vegetative insecticidal protein 2
(VIP2) {Bacillus cereus [TaxId: 1396]}
Length = 205
Score = 25.0 bits (54), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 191 DFKKKKEEEKKEAKKKTKKK---EEEKK 215
DFK+ KE+ K+ K+K K+ EK
Sbjct: 6 DFKEDKEKAKEWGKEKEKEWKLTATEKG 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.134 0.406
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 848,768
Number of extensions: 38774
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 63
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)