Query psy16678
Match_columns 87
No_of_seqs 146 out of 1009
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:11:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4220|consensus 98.9 3.9E-09 8.4E-14 70.4 5.0 64 1-68 124-187 (503)
2 PF00001 7tm_1: 7 transmembran 98.4 1.7E-08 3.7E-13 61.7 -1.7 45 1-45 78-122 (257)
3 PHA03087 G protein-coupled che 98.4 6.8E-08 1.5E-12 62.7 0.6 44 1-44 132-175 (335)
4 PHA02834 chemokine receptor-li 98.4 2.2E-07 4.9E-12 60.3 2.0 43 1-44 119-161 (323)
5 KOG4219|consensus 98.2 7.3E-08 1.6E-12 64.1 -2.2 44 1-46 129-172 (423)
6 PHA03235 DNA packaging protein 98.2 5.8E-07 1.3E-11 60.4 2.0 45 1-46 126-170 (409)
7 PHA02638 CC chemokine receptor 98.2 3.8E-07 8.3E-12 61.3 0.6 45 1-45 189-233 (417)
8 PHA03234 DNA packaging protein 98.1 1.9E-06 4.1E-11 56.6 2.7 42 1-44 126-167 (338)
9 PF10320 7TM_GPCR_Srsx: Serpen 96.7 0.00087 1.9E-08 42.5 1.4 35 1-35 82-116 (257)
10 PF10328 7TM_GPCR_Srx: Serpent 96.6 0.00032 6.9E-09 44.7 -0.9 42 1-42 88-129 (274)
11 KOG2087|consensus 96.3 0.0025 5.5E-08 42.4 1.6 50 1-51 125-174 (363)
12 PF10323 7TM_GPCR_Srv: Serpent 94.5 0.0022 4.8E-08 41.3 -3.0 42 1-42 96-138 (283)
13 PF03383 Serpentine_r_xa: Caen 91.7 0.24 5.3E-06 29.4 2.9 42 1-42 65-106 (153)
14 PF10324 7TM_GPCR_Srw: Serpent 71.7 0.67 1.5E-05 30.0 -1.3 43 1-43 99-143 (318)
15 PF10316 7TM_GPCR_Srbc: Serpen 71.5 0.94 2E-05 29.4 -0.6 20 1-20 102-121 (273)
16 PF06681 DUF1182: Protein of u 34.4 58 0.0013 20.7 2.8 16 1-16 138-153 (226)
17 KOG1380|consensus 27.3 25 0.00055 24.0 0.4 24 27-51 221-244 (409)
No 1
>KOG4220|consensus
Probab=98.87 E-value=3.9e-09 Score=70.43 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=50.1
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccccccccccccCCCCCcceEee
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKK 68 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 68 (87)
||+|||.+|.+||.|+..+|.+++..++.+.|+++++.-.|-++ .|.-..... ....+.|..++
T Consensus 124 ISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl-~WqyivGkr---Tv~~~eC~iQF 187 (503)
T KOG4220|consen 124 ISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAIL-FWQYIVGKR---TVPDGECYIQF 187 (503)
T ss_pred eeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHH-hhHhheeee---ecCCCceEEEe
Confidence 68999999999999999999999999999999999998777644 455433322 33456785543
No 2
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.43 E-value=1.7e-08 Score=61.70 Aligned_cols=45 Identities=27% Similarity=0.549 Sum_probs=40.6
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 45 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~ 45 (87)
+|+|||++|++|++++...+++++...++.+|+.+++.+.|+.+.
T Consensus 78 is~dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~ 122 (257)
T PF00001_consen 78 ISIDRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFF 122 (257)
T ss_dssp HHHHHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999998888899999999999999999998653
No 3
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.41 E-value=6.8e-08 Score=62.67 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=39.3
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 44 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~ 44 (87)
||+|||++|++|+++....+.+++...++++|+.+++.+.|++.
T Consensus 132 iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~ 175 (335)
T PHA03087 132 MSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILF 175 (335)
T ss_pred HHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhh
Confidence 57899999999999988888889999999999999998888854
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=98.35 E-value=2.2e-07 Score=60.34 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=34.5
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 44 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~ 44 (87)
||+|||.+|++|+++.. .+.+++..+++.+|+.+++.++|+++
T Consensus 119 IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~ 161 (323)
T PHA02834 119 ISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMV 161 (323)
T ss_pred HHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHH
Confidence 58899999999998644 34566667778899999999988854
No 5
>KOG4219|consensus
Probab=98.24 E-value=7.3e-08 Score=64.08 Aligned_cols=44 Identities=18% Similarity=0.455 Sum_probs=38.5
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCG 46 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~ 46 (87)
||+|||.||.||++.+ .+++.+..+++++|+++++.++|..+..
T Consensus 129 iA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s 172 (423)
T KOG4219|consen 129 IAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYS 172 (423)
T ss_pred HHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeee
Confidence 5889999999999854 6888889999999999999999996643
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.23 E-value=5.8e-07 Score=60.40 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=36.4
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCG 46 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~ 46 (87)
||+|||.+|++|++... .+++++..+++++|+.+++.++|+.++.
T Consensus 126 ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~ 170 (409)
T PHA03235 126 IAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYT 170 (409)
T ss_pred HHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 58899999999986543 4577788888999999999999875543
No 7
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.20 E-value=3.8e-07 Score=61.35 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=38.7
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 45 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~ 45 (87)
|++|||+||+||+++...++.+.+...++.+|+.+.+.++|+.+.
T Consensus 189 isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~ 233 (417)
T PHA02638 189 MSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFI 233 (417)
T ss_pred HHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHH
Confidence 578999999999988777777777888889999999999998653
No 8
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.13 E-value=1.9e-06 Score=56.58 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=30.7
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 44 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~ 44 (87)
||+|||.||++|.++.. +.++....++..|+.+++.++|.++
T Consensus 126 ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~ 167 (338)
T PHA03234 126 IATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAAL 167 (338)
T ss_pred HHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhH
Confidence 68999999999987642 2333334455669999998988864
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.67 E-value=0.00087 Score=42.54 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=25.6
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHH
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSP 35 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~ 35 (87)
|++||++||+.|++|+...+.+..........+.+
T Consensus 82 i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s 116 (257)
T PF10320_consen 82 IAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYS 116 (257)
T ss_pred HHhhheeeEeehhhhhhcccccchhhHhHHHHHHH
Confidence 57899999999999998888775545444433333
No 10
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.62 E-value=0.00032 Score=44.69 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=36.3
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 42 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~ 42 (87)
||++|+.||..|.+|....+.+.+..++...|+.+.....+.
T Consensus 88 iaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~ 129 (274)
T PF10328_consen 88 IAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTIL 129 (274)
T ss_pred HHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHh
Confidence 588999999999999998898889899999999987655554
No 11
>KOG2087|consensus
Probab=96.26 E-value=0.0025 Score=42.39 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=39.9
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 51 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~ 51 (87)
+++||+++|.+|++..+.-..+....+.+..|+.+++.++.|. ++.+.+.
T Consensus 125 itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl-~g~s~Y~ 174 (363)
T KOG2087|consen 125 ITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPL-FGISSYG 174 (363)
T ss_pred HHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccc-cCCCCCc
Confidence 4689999999999977666666688888899999999999884 4644443
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=94.51 E-value=0.0022 Score=41.30 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=35.0
Q ss_pred CceeeEEeeecCC-CCCceechhHHHHHHHHHhHHHHHHHhhh
Q psy16678 1 MLGHGYYAIVKPL-KYPINMTKRVVAFMLLNVWVSPAVISFVP 42 (87)
Q Consensus 1 is~dRy~~i~~pl-~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~ 42 (87)
+|++||.+|++|. ++.+..++.+...+.+.-|+.+.+.++|.
T Consensus 96 ls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~ 138 (283)
T PF10323_consen 96 LSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPF 138 (283)
T ss_pred HHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeee
Confidence 4789999999999 66666777777788888999999888875
No 13
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=91.74 E-value=0.24 Score=29.45 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=33.1
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVP 42 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~ 42 (87)
|+++|-..+.+|++.....+.++...-+.++.+..+...+.|
T Consensus 65 Mti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIP 106 (153)
T PF03383_consen 65 MTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIP 106 (153)
T ss_pred HHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhh
Confidence 567999999999997777888888888877666666655555
No 14
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=71.65 E-value=0.67 Score=30.00 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=28.4
Q ss_pred CceeeEEeeecCCCCCc--eechhHHHHHHHHHhHHHHHHHhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPI--NMTKRVVAFMLLNVWVSPAVISFVPI 43 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~--~~~~~~~~~~~~~~Wv~~~~~~~~~~ 43 (87)
||+.|++++.+|++... .-+++.+...+..+.+.+...+.+..
T Consensus 99 mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~ 143 (318)
T PF10324_consen 99 MALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYF 143 (318)
T ss_pred HHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhh
Confidence 46789999999987542 23455565666666666666666663
No 15
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=71.47 E-value=0.94 Score=29.39 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=16.3
Q ss_pred CceeeEEeeecCCCCCceec
Q psy16678 1 MLGHGYYAIVKPLKYPINMT 20 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~ 20 (87)
||+||..|+..|..|+..+.
T Consensus 102 Ia~dR~~A~~fPI~y~~~r~ 121 (273)
T PF10316_consen 102 IALDRVFAVYFPIFYHNYRK 121 (273)
T ss_pred HHHHHHHHHcCCHHHHccCc
Confidence 57899999999987766543
No 16
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=34.42 E-value=58 Score=20.74 Aligned_cols=16 Identities=13% Similarity=0.096 Sum_probs=11.1
Q ss_pred CceeeEEeeecCCCCC
Q psy16678 1 MLGHGYYAIVKPLKYP 16 (87)
Q Consensus 1 is~dRy~~i~~pl~~~ 16 (87)
+|+|||.-|+.-.+.+
T Consensus 138 VAIyRy~~VV~k~rl~ 153 (226)
T PF06681_consen 138 VAIYRYLIVVLKKRLS 153 (226)
T ss_pred hhhhhhheeeecccCC
Confidence 4778888887755543
No 17
>KOG1380|consensus
Probab=27.32 E-value=25 Score=23.96 Aligned_cols=24 Identities=33% Similarity=0.794 Sum_probs=18.5
Q ss_pred HHHHHhHHHHHHHhhhhhhcccccc
Q psy16678 27 MLLNVWVSPAVISFVPIMCGWYTTS 51 (87)
Q Consensus 27 ~~~~~Wv~~~~~~~~~~~~~~~~~~ 51 (87)
-++..|+.+.+..+|| ++||-.-.
T Consensus 221 hiinTWvGavVGAIPP-LMGwAAas 244 (409)
T KOG1380|consen 221 HIINTWVGAVVGAIPP-LMGWAAAS 244 (409)
T ss_pred hhhhhHHHHHhccCCc-cchhhhhc
Confidence 4667899999999999 56886533
Done!