Query psy16678
Match_columns 87
No_of_seqs 146 out of 1009
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 19:11:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16678.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16678hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 98.7 6.6E-10 2.3E-14 74.4 -1.3 47 1-48 131-177 (510)
2 3uon_A Human M2 muscarinic ace 98.6 4.3E-09 1.5E-13 68.8 -0.2 47 1-48 117-163 (467)
3 4ea3_A Fusion protein of nocic 98.6 6.1E-09 2.1E-13 68.2 0.5 50 1-50 218-267 (434)
4 3v2y_A Sphingosine 1-phosphate 98.6 7.7E-09 2.6E-13 69.3 0.8 48 1-50 156-203 (520)
5 2rh1_A Beta-2-adrenergic recep 98.6 9.3E-09 3.2E-13 68.5 0.9 49 1-49 134-182 (500)
6 1u19_A Rhodopsin; G protein-co 98.6 9.2E-09 3.1E-13 64.9 0.5 50 1-52 132-181 (349)
7 4dkl_A MU-type opioid receptor 98.6 3E-09 1E-13 69.4 -1.9 48 1-48 110-157 (464)
8 3vw7_A Proteinase-activated re 98.6 5.7E-09 2E-13 68.5 -0.6 48 1-49 114-161 (484)
9 3eml_A Human adenosine A2A rec 98.5 1.2E-08 4E-13 66.9 0.2 50 1-51 113-162 (488)
10 3odu_A C-X-C chemokine recepto 98.5 4.6E-09 1.6E-13 69.2 -1.8 45 1-45 140-184 (502)
11 2z73_A Rhodopsin; visual pigme 98.5 2.1E-08 7E-13 65.7 1.2 50 1-51 129-178 (448)
12 2ks9_A Substance-P receptor; w 98.4 4.2E-08 1.5E-12 62.4 1.2 42 1-44 126-167 (364)
13 4eiy_A Adenosine receptor A2A/ 98.4 8.9E-09 3E-13 66.9 -2.4 50 1-51 123-172 (447)
14 4amj_A Beta-1 adrenergic recep 98.4 7.7E-09 2.6E-13 64.2 -2.6 47 1-47 105-151 (315)
15 2lnl_A C-X-C chemokine recepto 98.4 8.2E-08 2.8E-12 59.7 1.9 48 1-50 103-150 (296)
16 3rze_A Histamine H1 receptor, 98.4 4E-08 1.4E-12 63.9 0.4 48 1-50 102-149 (452)
17 3sn6_R Lysozyme, beta-2 adrene 98.3 1.9E-08 6.6E-13 67.1 -3.1 51 1-51 276-326 (514)
18 3pbl_A D(3) dopamine receptor, 98.2 8.1E-08 2.8E-12 63.0 -1.3 48 1-49 133-183 (481)
19 1hll_A Alpha-2A adrenergic rec 98.0 2.1E-08 7.3E-13 43.5 -5.2 22 1-22 10-31 (32)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=98.73 E-value=6.6e-10 Score=74.37 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=42.3
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY 48 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~ 48 (87)
||+|||+||++|++|...++++++..+++++|+++++.++|+++ .+.
T Consensus 131 is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~-~~~ 177 (510)
T 4grv_A 131 LSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLF-TMG 177 (510)
T ss_dssp HHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHH-HEE
T ss_pred HHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHH-hhc
Confidence 58899999999999999999999999999999999999999865 443
No 2
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=98.60 E-value=4.3e-09 Score=68.77 Aligned_cols=47 Identities=26% Similarity=0.602 Sum_probs=41.9
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY 48 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~ 48 (87)
||+|||++|++|++|...++.+++..+++++|+++++.++|+++ .+.
T Consensus 117 isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~-~~~ 163 (467)
T 3uon_A 117 ISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAIL-FWQ 163 (467)
T ss_dssp HHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 57899999999999999999999999999999999999998854 444
No 3
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=98.60 E-value=6.1e-09 Score=68.17 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.9
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTT 50 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~ 50 (87)
||+|||++|++|+++...++++++..+++++|+.+++.++|..+.+....
T Consensus 218 isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~ 267 (434)
T 4ea3_A 218 MSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQV 267 (434)
T ss_dssp HHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
T ss_pred HHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHHHhhHheeeeeEe
Confidence 57899999999999999999999999999999999999988866554443
No 4
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=98.60 E-value=7.7e-09 Score=69.31 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=36.3
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTT 50 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~ 50 (87)
||+|||+||+ |++|...++.+++..+++++|+++++.++|++ ++|...
T Consensus 156 isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~-~~~~~~ 203 (520)
T 3v2y_A 156 IAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPI-MGWNCI 203 (520)
T ss_dssp HHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTT-TTCBCT
T ss_pred HHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHH-Heeccc
Confidence 5889999999 99999999999999999999999999998884 477765
No 5
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=98.58 E-value=9.3e-09 Score=68.49 Aligned_cols=49 Identities=35% Similarity=0.742 Sum_probs=42.2
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT 49 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~ 49 (87)
||+|||++|++|++|...++.+++..+++++|+++++.+++|.+.+|..
T Consensus 134 isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~ 182 (500)
T 2rh1_A 134 IAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYR 182 (500)
T ss_dssp HHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeec
Confidence 5789999999999999888999999999999999999886665555544
No 6
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=98.57 E-value=9.2e-09 Score=64.87 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=41.6
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSE 52 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~~ 52 (87)
||+|||++|++|+++.. ++++++...++.+|+.+++.++|+. .++..+.+
T Consensus 132 isidRy~aI~~P~~~~~-~~~~~~~~~i~~~W~~~~~~~~~~~-~~~~~~~~ 181 (349)
T 1u19_A 132 LAIERYVVVCKPMSNFR-FGENHAIMGVAFTWVMALACAAPPL-VGWSRYIP 181 (349)
T ss_dssp HHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHHHHHHHHHSGGG-TTSSCCEE
T ss_pred HHHHHHheeeCCcccee-eccchhHHHHHHHHHHHHHHHHHHH-Hheeeeec
Confidence 57899999999999876 6888888899999999999999885 46655443
No 7
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=98.56 E-value=3e-09 Score=69.38 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=41.9
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWY 48 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~ 48 (87)
||+|||++|++|++|...++.+++..+++++|+++++.++|+++....
T Consensus 110 is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~ 157 (464)
T 4dkl_A 110 MSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT 157 (464)
T ss_dssp HHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCC
T ss_pred HHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheee
Confidence 578999999999999888899999999999999999999988654333
No 8
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=98.56 E-value=5.7e-09 Score=68.53 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=37.7
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT 49 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~ 49 (87)
||+|||++|++|++|...++.+++..+++++|+++++.++|+++ .+..
T Consensus 114 is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~-~~~~ 161 (484)
T 3vw7_A 114 ISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLL-KEQT 161 (484)
T ss_dssp HHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHT-SCCE
T ss_pred HHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHH-hhhc
Confidence 57899999999999988889999999999999999999998854 4443
No 9
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=98.52 E-value=1.2e-08 Score=66.94 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=43.8
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 51 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~ 51 (87)
||+|||++|++|++|...++.+++..+++++|+++++.++|++ ++|....
T Consensus 113 is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~-~~~~~~~ 162 (488)
T 3eml_A 113 IAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM-LGWNNCG 162 (488)
T ss_dssp HHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGG-GTCCSSC
T ss_pred HHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHH-hcccccc
Confidence 5789999999999999989999999999999999999998885 4666544
No 10
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=98.52 E-value=4.6e-09 Score=69.24 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=40.8
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMC 45 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~ 45 (87)
||+|||++|++|++|...++.+++..+++++|+++++.++|+++.
T Consensus 140 is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~ 184 (502)
T 3odu_A 140 ISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIF 184 (502)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHH
T ss_pred HHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 578999999999999888899999999999999999999988653
No 11
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=98.52 E-value=2.1e-08 Score=65.70 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=43.1
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 51 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~ 51 (87)
||+|||++|++|+++...++++++..+++++|+.+++.++++.+ ++....
T Consensus 129 isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~-~~~~~~ 178 (448)
T 2z73_A 129 ISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF-GWGAYT 178 (448)
T ss_dssp HHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGG-TSSCEE
T ss_pred HHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHh-ceeeee
Confidence 57899999999999988889999999999999999999888854 565443
No 12
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=98.44 E-value=4.2e-08 Score=62.37 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=36.0
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 44 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~ 44 (87)
||+|||++|++|++++ .+.+++..+++++|+.+++.++|+..
T Consensus 126 isidRy~aI~~P~~~~--~~~~~~~~~i~~~W~~s~~~~~p~~~ 167 (364)
T 2ks9_A 126 VAFDRYMAIIHPLQPR--LSATATKVVICVIWVLALLLAFPQGY 167 (364)
T ss_dssp HHHHHHHHHHCCCTTS--CCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhhcccc--cccchHHHHHHHHHHHHHHHHhHHHH
Confidence 5789999999999976 47778888889999999998888754
No 13
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=98.42 E-value=8.9e-09 Score=66.94 Aligned_cols=50 Identities=26% Similarity=0.430 Sum_probs=43.5
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 51 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~ 51 (87)
||+|||++|++|++|...++.+++..+++++|+.+++.++|+. ++|....
T Consensus 123 is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~-~~~~~~~ 172 (447)
T 4eiy_A 123 IAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPM-LGWNNCG 172 (447)
T ss_dssp HHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGG-GTCSSTT
T ss_pred HHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhh-heecccc
Confidence 5789999999999998888999999999999999999998885 4666543
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=98.42 E-value=7.7e-09 Score=64.22 Aligned_cols=47 Identities=34% Similarity=0.702 Sum_probs=41.2
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 47 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~ 47 (87)
||+|||++|++|++++..++++++..+++++|+.+++.+.++.+..+
T Consensus 105 isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~ 151 (315)
T 4amj_A 105 IAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHW 151 (315)
T ss_dssp HHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 57899999999999988889999999999999999998888865443
No 15
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=98.41 E-value=8.2e-08 Score=59.70 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=37.5
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTT 50 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~ 50 (87)
||+|||.+|++|+++.... +++...+++++|+.+++.++|+.. .+...
T Consensus 103 isidRy~aI~~P~~~~~~~-~~~~~~~~~~~W~~s~~~~~p~~~-~~~~~ 150 (296)
T 2lnl_A 103 ISVDRYLAIVHATRTLTQK-RHLVKFVCLGCWGLSMNLSLPFFL-FRQAY 150 (296)
T ss_dssp HHHHHHHHSSSCSSSSCCH-HHHHHHHHHHHHHHHHHHHHHHHH-TSSCC
T ss_pred HHhhhhhhhhhccccchhh-hhhhHheehHHHHHHHHHhcchhh-cceee
Confidence 5789999999999987654 455666778899999999988855 44443
No 16
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=98.40 E-value=4e-08 Score=63.94 Aligned_cols=48 Identities=21% Similarity=0.388 Sum_probs=41.0
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTT 50 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~ 50 (87)
||+|||++|++|++|...++.+++..+++++|+++++.++|.+ ++...
T Consensus 102 is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~p~~--~~~~~ 149 (452)
T 3rze_A 102 LCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIPIL--GWNHF 149 (452)
T ss_dssp HHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHHHHH--CCCC-
T ss_pred HHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHHHHH--HHHhc
Confidence 5789999999999999999999999999999999998888753 45443
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=98.29 E-value=1.9e-08 Score=67.11 Aligned_cols=51 Identities=33% Similarity=0.727 Sum_probs=42.8
Q ss_pred CceeeEEeeecCCCCCceechhHHHHHHHHHhHHHHHHHhhhhhhcccccc
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTS 51 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~~~ 51 (87)
||+|||++|++|+++...++.+++..+++++|+.+++.+.++.+.+|....
T Consensus 276 isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~ 326 (514)
T 3sn6_R 276 IAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRAT 326 (514)
T ss_dssp HHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC--
T ss_pred HHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecc
Confidence 578999999999999888899999999999999999888777666665543
No 18
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=98.22 E-value=8.1e-08 Score=62.99 Aligned_cols=48 Identities=31% Similarity=0.465 Sum_probs=40.7
Q ss_pred CceeeEEeeecCCCC---CceechhHHHHHHHHHhHHHHHHHhhhhhhcccc
Q psy16678 1 MLGHGYYAIVKPLKY---PINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT 49 (87)
Q Consensus 1 is~dRy~~i~~pl~~---~~~~~~~~~~~~~~~~Wv~~~~~~~~~~~~~~~~ 49 (87)
||+|||++|++|++| ....+.+++..+++++|+++++.++|+. +++..
T Consensus 133 is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~-~~~~~ 183 (481)
T 3pbl_A 133 ISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL-FGFNT 183 (481)
T ss_dssp HHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHH-TTTCC
T ss_pred HHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH-heecc
Confidence 578999999999998 5667888899999999999999999885 45554
No 19
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=98.00 E-value=2.1e-08 Score=43.47 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=18.2
Q ss_pred CceeeEEeeecCCCCCceechh
Q psy16678 1 MLGHGYYAIVKPLKYPINMTKR 22 (87)
Q Consensus 1 is~dRy~~i~~pl~~~~~~~~~ 22 (87)
||+|||++|++|+++...++++
T Consensus 10 is~dRy~aI~~Pl~~~~~~t~~ 31 (32)
T 1hll_A 10 ISLDRYWSITQAIEYNLKRTPR 31 (32)
T ss_dssp HHTHHHHHHHHHHGGGSSCCCC
T ss_pred HHHHHHHHhhhhhhcccccCCC
Confidence 5899999999999987766543
Done!