RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16678
(87 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 40.4 bits (95), Expect = 2e-05
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSE 52
Y AIV PL+Y T R ++L VWV ++S P++ W T E
Sbjct: 77 YLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVE 123
>gnl|CDD|234900 PRK01109, PRK01109, ATP-dependent DNA ligase; Provisional.
Length = 590
Score = 26.9 bits (60), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 YAIVKPLKYPINMTKRVVAFMLLNVWVSPAVI 38
++KP K + RVV+ M +VWV P ++
Sbjct: 493 PKMLKPYKID-HKHPRVVSKMEPDVWVEPKLV 523
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 26.1 bits (58), Expect = 3.0
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 65 DFKKCILVESSNVCTTYLMR 84
DF+ I++ +SN + ++R
Sbjct: 631 DFRNTIIIMTSNAGSEEILR 650
>gnl|CDD|144537 pfam00979, Reovirus_cap, Reovirus outer capsid protein, Sigma 3.
Sigma 3 is the major outer capsid protein of reovirus.
Sigma 3 is encoded by genome segment 4. Sigma 3 binds to
double stranded RNA and associates with polypeptide u1
and its cleavage product u1C to form the outer shell of
the virion. The Sigma 3 protein possesses a zinc-finger
motif and an RNA-binding domain in the N and C termini
respectively. This protein is also thought to play a
role in pathogenesis.
Length = 367
Score = 25.6 bits (56), Expect = 4.0
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 16 PINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLK--YRYQHPNICDFKKCILVE 73
PI + + W+ + PI+ G T ++ + HP I KK
Sbjct: 235 PIKLKGADPREGVATFWLDFGHFALTPIIGGVPVTGQYARGSCHVGHPVIGSTKKASHYR 294
Query: 74 S 74
+
Sbjct: 295 N 295
>gnl|CDD|151739 pfam11298, DUF3099, Protein of unknown function (DUF3099). Some
members in this family of proteins are annotated as
membrane proteins however this cannot be confirmed.
Currently no function is known.
Length = 73
Score = 24.6 bits (54), Expect = 4.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 14 KYPINMTKRVVAFMLLNVWVSPAVISFVPI 43
KY + M R+V +L V ++ V I
Sbjct: 19 KYVVLMAVRIVCLILAAVVYGLGWLALVII 48
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family.
Length = 359
Score = 25.0 bits (55), Expect = 5.8
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 25/85 (29%)
Query: 3 GHGYYAIVKPLKYPINMTKR--VVAFML-------------------LNVWV----SPAV 37
+YAI P + + VV + + + +P
Sbjct: 52 DAKFYAISAKFPKPFSNKGKTLVVQYEVKLQQGIDCGGAYIKLLSKDFDQKDFSGETPYT 111
Query: 38 ISFVPIMCGWYTTSEHLKYRYQHPN 62
I F P +CG T H +R++
Sbjct: 112 IMFGPDICGSDTKKVHFIFRHKPIT 136
>gnl|CDD|219160 pfam06749, DUF1218, Protein of unknown function (DUF1218). This
family contains hypothetical plant proteins of unknown
function. Family members contain a number of conserved
cysteine residues.
Length = 97
Score = 24.5 bits (54), Expect = 6.0
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 16 PINMTKRVVAFMLLNV-WVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKK 68
P + KR +A + + W++ VI+F ++ G + H +Y C K
Sbjct: 28 PKSGRKRALAVVCFVLSWIA-FVIAFALLLAGAARNAYHTRYNVHFRPSCYTLK 80
>gnl|CDD|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate
dikinase [Carbohydrate transport and metabolism].
Length = 740
Score = 25.0 bits (55), Expect = 6.4
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 41 VPIMCGWYTTSEHLKYRYQHPNICDFKKCILVESS 75
+P+ G+ TSE +Y + + D IL
Sbjct: 34 LPVPPGFAITSEAYRYFLKENGLADKILKILSALD 68
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins. LanM is a bifunctional
enzyme, involved in the synthesis of class II
lantibiotics. It is responsible for both the dehydration
and the cyclization of the precursor-peptide during
lantibiotic synthesis. The C-terminal domain shows
similarity to LanC, the cyclase component of the lan
operon, but the N terminus seems to be unrelated to the
dehydratase, LanB.
Length = 825
Score = 25.0 bits (55), Expect = 6.4
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 4 HGYYAIVKPLKYPINMTKRVVAFMLLNVW 32
Y +++ +P + + LL+ W
Sbjct: 358 AVYALLLQASTHPDYLRSPLDREKLLDRW 386
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 24.7 bits (54), Expect = 6.8
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 4 HGYYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEH 53
Y AIV P+K T + + L +W+ ++I PI+ + T +H
Sbjct: 135 DRYIAIVHPVKSNKINTVKYGYIVSLVIWII-SIIETTPILFVYTTKKDH 183
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 24.9 bits (55), Expect = 7.2
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 17/85 (20%)
Query: 8 AIVKPLKYPINMTKRVVAFMLL--------------NVWVSPAVIS-FVPIMCGWYTTSE 52
A++ PLK ++ +R + F+LL + ++ +V + +Y
Sbjct: 96 ALIAPLKVDSDVLRREIPFLLLATLILLLVLLDGHLSRLDGIVLLLLYVLYL--YYLLKL 153
Query: 53 HLKYRYQHPNICDFKKCILVESSNV 77
+ + K + + +
Sbjct: 154 SREAEEPGEQENERPKKGSLRKALL 178
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is
highly homologous to the GT 8 family. C-terminal
domain of glycoprotein glucosyltransferase (UGT). UGT
is a large glycoprotein whose C-terminus contains the
catalytic activity. This catalytic C-terminal domain is
highly homologous to Glycosyltransferase Family 8 (GT
8) and contains the DXD motif that coordinates donor
sugar binding, characteristic for Family 8
glycosyltransferases. GT 8 proteins are retaining
enzymes based on the relative anomeric stereochemistry
of the substrate and product in the reaction catalyzed.
The non-catalytic N-terminal portion of the human UTG1
(HUGT1) has been shown to monitor the protein folding
status and activate its glucosyltransferase activity.
Length = 248
Score = 24.7 bits (54), Expect = 7.3
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 3 GHGYYAIVKPLKYP-INMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT-TSEHLKYRYQH 60
GH Y ++ + + TK V F + ++SP F+P M Y E + Y++
Sbjct: 9 GHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPR 68
>gnl|CDD|223269 COG0191, Fba, Fructose/tagatose bisphosphate aldolase [Carbohydrate
transport and metabolism].
Length = 286
Score = 24.4 bits (54), Expect = 7.8
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 12 PLKYPINMTKRVVAFM-LLNVWV 33
P + I +TK VV F V V
Sbjct: 110 PFEENIAITKEVVEFAHAYGVSV 132
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.139 0.462
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,322,862
Number of extensions: 325698
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 16
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)