RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16678
(87 letters)
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 72.6 bits (178), Expect = 6e-17
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT-TSEHLKYRYQHPNIC 64
Y+AI P KY +TK ++L VW+ + SF+PI WY T + Y C
Sbjct: 281 YFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCC 340
Query: 65 DF 66
DF
Sbjct: 341 DF 342
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 71.3 bits (174), Expect = 2e-16
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYT-TSEHLKYRYQHPNIC 64
Y+AI P KY +TK ++L VW+ + SF+PI WY T + Y C
Sbjct: 139 YFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCC 198
Query: 65 DF 66
DF
Sbjct: 199 DF 200
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 65.5 bits (160), Expect = 2e-14
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYR-YQHPNIC 64
Y AI P +Y MT+ ++ VW A++SF+PIM W+ + + YQ P C
Sbjct: 110 YLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCC 169
Query: 65 DF 66
DF
Sbjct: 170 DF 171
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 64.0 bits (155), Expect = 8e-14
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 65
Y AI PL+Y +T ++ WV I P++ GW + + + +
Sbjct: 118 YIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGE 176
Query: 66 FKKCILVESSNVCTTYL 82
+ L E +
Sbjct: 177 GQVACLFEDVVPMNYMV 193
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 60.5 bits (146), Expect = 1e-12
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 65
Y+ + KPL YP+ T ++ M+ WV ++ I+ W +
Sbjct: 122 YFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAIL-FWQFIVGV-RTVEDGECYIQ 179
Query: 66 F 66
F
Sbjct: 180 F 180
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 60.1 bits (145), Expect = 1e-12
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 65
Y AI PL+Y +T ++ WV I P++ GW + + + +
Sbjct: 128 YIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML-GWNNCGQPKEGKNHSQGCGE 186
Query: 66 FKKCILVESSNVCTTYL 82
+ L E +
Sbjct: 187 GQVACLFEDVVPMNYMV 203
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 59.7 bits (144), Expect = 3e-12
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPNICD 65
Y ++ +PL+Y TK + +L W + + +PI+ GW + R + D
Sbjct: 107 YRSVQQPLRYLKYRTKTRASATILGAWFL-SFLWVIPIL-GWNHFMQQTSVRREDKCETD 164
Query: 66 F 66
F
Sbjct: 165 F 165
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 52.8 bits (126), Expect = 7e-10
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 6 YYAIVKPLKYPIN---MTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEHLKYRYQHPN 62
Y A+V P+ Y + R VA M+ VWV +S P++ G+ TT + P
Sbjct: 138 YTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSC-PLLFGFNTTGD--------PT 188
Query: 63 ICDFKKCILVESSNVCTTYL 82
+C V S+V + YL
Sbjct: 189 VCSISNPDFVIYSSVVSFYL 208
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 42.2 bits (98), Expect = 4e-06
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEH 53
Y ++K + + ++ WV ++ +PIM GW S
Sbjct: 161 YITMLKMKLHNG-SNNFRLFLLISACWVISLILGGLPIM-GWNCISAL 206
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 31.8 bits (72), Expect = 0.015
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 47
Y I +P+ M+ R M++ VW+ + + PI GW
Sbjct: 134 YNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIF-GW 174
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 31.6 bits (71), Expect = 0.017
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 34 SPAVISFVPIMCGWYTTSEHLKYRYQHPN 62
S I F P +CG T H+ + Y+ N
Sbjct: 112 SEYNIMFGPDICGPGTKKVHVIFNYKGKN 140
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 29.7 bits (67), Expect = 0.088
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGW 47
Y + KP+ + + WV + P + GW
Sbjct: 137 YVVVCKPMS-NFRFGENHAIMGVAFTWVMALACA-APPLVGW 176
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 29.3 bits (65), Expect = 0.13
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 34 SPAVISFVPIMCGWYTTSEHLKYRYQHPN 62
S I F P +CG T H+ + Y+ N
Sbjct: 117 SEYNIMFGPDICGPGTKKVHVIFNYKGKN 145
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 26.6 bits (59), Expect = 0.24
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 6 YYAIVKPLKYPINMTKR 22
Y++I + ++Y + T R
Sbjct: 15 YWSITQAIEYNLKRTPR 31
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 27.7 bits (61), Expect = 0.39
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIMCGWYTTSEH 53
Y A+ P+K T R + + W+ + I +P+M T
Sbjct: 115 YIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIG-LPVMFMATTKYRQ 161
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 27.5 bits (61), Expect = 0.55
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 44
Y AI P++ T + + +W +V+ VP+
Sbjct: 223 YVAICHPIRALDVRTSSKAQAVNVAIWALASVVG-VPVA 260
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 26.9 bits (60), Expect = 0.79
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISF 40
Y AI+ PL+ ++ ++ +WV +++F
Sbjct: 131 YMAIIHPLQPR--LSATATKVVICVIWVLALLLAF 163
>1w2f_A Inositol-trisphosphate 3-kinase A; inositol phosphate kinase,
transferase, calmodulin-binding; 1.8A {Homo sapiens}
SCOP: d.143.1.3 PDB: 1tzd_A* 1w2d_A* 1w2c_A*
Length = 276
Score = 25.9 bits (56), Expect = 2.0
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 34 SPAVISFVPIMCGW-------YTTSEHLKYRYQHPNICDFK 67
+ A+ VP G Y + L + P + D K
Sbjct: 39 ADALRGCVPAFHGVVERDGESYLQLQDLLDGFDGPCVLDCK 79
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol
phosphate kinase, transferase; 2.90A {Arabidopsis
thaliana}
Length = 275
Score = 25.5 bits (55), Expect = 2.6
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 9 IVKPLKYPINMTKRVVAF---MLLNVWVSPAVISFVPIMCGWYTTS----------EHLK 55
KPL+ + + V F N V + + P+ G E+L
Sbjct: 19 FFKPLQGD-SRGEIEVKFYESFSSNTEVPEHIHRYFPVYHGTQAVEGSDGAAMMVLENLL 77
Query: 56 YRYQHPNICDFK 67
Y P++ D K
Sbjct: 78 AEYTKPSVMDVK 89
>2iew_A Inositol polyphosphate multikinase; ATP-grAsp fold related,
transferase; 2.00A {Saccharomyces cerevisiae} PDB:
2if8_A*
Length = 363
Score = 24.9 bits (53), Expect = 4.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 52 EHLKYRYQHPNICDFK 67
E+L Y + PNI D K
Sbjct: 118 ENLLYGFSKPNILDIK 133
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 24.9 bits (54), Expect = 4.8
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 6 YYAIVKPLKYPINMTKRVVAFMLLNVWVSPAVISFVPIM 44
Y AIV + + VW+ +++ +P
Sbjct: 145 YLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLT-IPDF 182
>2aqx_A Predicted: inositol 1,4,5-trisphosphate 3-kinase; IP3K, ITPKB,
IP3-3K, IP3-3KB, IP3, calmodu binding, transferase;
HET: ATP; 2.50A {Mus musculus}
Length = 289
Score = 24.8 bits (53), Expect = 4.8
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 7/35 (20%)
Query: 40 FVPIMCG-------WYTTSEHLKYRYQHPNICDFK 67
FVP G Y + L + P + D K
Sbjct: 58 FVPAYHGDVVKDGERYNQMDDLLADFDSPCVMDCK 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.139 0.462
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,344,147
Number of extensions: 62595
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 23
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)