RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16678
         (87 letters)



>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 249

 Score = 29.9 bits (67), Expect = 0.022
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 34  SPAVISFVPIMCGWYTTSEHLKYRYQHPNICDFKKCILVESSNVCTTYLMRKKT 87
           +P  I F P  CG      H  +R+++P    +++           TY   KKT
Sbjct: 124 TPYTIMFGPDKCGE-DYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKT 176


>d1w2fa_ d.143.1.3 (A:) Inositol 1,4,5-trisphosphate 3-kinase A,
          IP3K A {Human (Homo sapiens) [TaxId: 9606]}
          Length = 276

 Score = 25.4 bits (55), Expect = 1.1
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)

Query: 34 SPAVISFVPIMCGW-------YTTSEHLKYRYQHPNICDFK 67
          + A+   VP   G        Y   + L   +  P + D K
Sbjct: 39 ADALRGCVPAFHGVVERDGESYLQLQDLLDGFDGPCVLDCK 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.462 

Gapped
Lambda     K      H
   0.267   0.0454    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,893
Number of extensions: 13696
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.6 bits)