Query psy16683
Match_columns 139
No_of_seqs 187 out of 1138
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:20:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a6y_A Orphan nuclear receptor 100.0 1.9E-34 6.5E-39 194.9 0.7 85 2-86 7-91 (94)
2 2ebl_A COUP transcription fact 100.0 6.6E-34 2.3E-38 190.4 -0.2 81 2-83 7-87 (89)
3 3cbb_A HNF-4-alpha, hepatocyte 100.0 7.4E-34 2.5E-38 186.0 -0.2 77 4-81 2-78 (78)
4 1dsz_A RAR-alpha, retinoic aci 100.0 1.3E-33 4.5E-38 188.0 -0.0 81 2-83 4-84 (86)
5 1dsz_B RXR-alpha, retinoic aci 100.0 1.1E-33 3.7E-38 188.0 -0.8 80 2-82 5-84 (85)
6 1ynw_B Retinoic acid receptor 100.0 3.3E-33 1.1E-37 190.3 0.1 82 2-84 3-84 (99)
7 1hcq_A Protein (estrogen recep 100.0 3.7E-33 1.3E-37 185.0 -0.1 80 2-82 4-83 (84)
8 2han_A Protein ultraspiracle; 100.0 3.2E-33 1.1E-37 188.5 -0.4 81 2-83 10-90 (93)
9 1lo1_A Steroid hormone recepto 100.0 8.3E-33 2.8E-37 188.1 -2.9 81 2-83 4-84 (98)
10 1cit_A NGFI-B, protein (orphan 100.0 2.7E-32 9.2E-37 182.7 -0.4 79 3-82 1-79 (89)
11 2a66_A Orphan nuclear receptor 100.0 3.1E-32 1E-36 189.5 -0.5 81 2-83 9-89 (113)
12 2han_B Ecdysone receptor; tran 100.0 3.1E-32 1E-36 191.2 -0.9 81 2-83 8-88 (119)
13 3g9m_A Glucocorticoid receptor 100.0 2.3E-32 7.8E-37 183.5 -1.8 81 2-83 2-82 (90)
14 2nll_B Protein (thyroid hormon 100.0 5.6E-32 1.9E-36 185.6 -1.5 82 2-83 1-83 (103)
15 4hn5_A Glucocorticoid receptor 100.0 2E-31 6.7E-36 186.4 -0.1 81 2-83 29-109 (117)
16 1kb2_A Vitamin D3 receptor; VD 100.0 1.1E-31 3.8E-36 186.0 -1.7 81 2-83 6-86 (110)
17 1r4i_A Androgen receptor; AR, 100.0 2.1E-31 7.1E-36 183.2 -0.8 81 2-83 7-87 (105)
18 3dzy_D Peroxisome proliferator 99.9 1.3E-27 4.6E-32 197.9 0.9 83 2-86 50-132 (419)
19 3dzy_A Retinoic acid receptor 99.9 1.3E-27 4.3E-32 200.5 -0.6 80 3-83 138-217 (467)
20 2lze_A A primordial catalytic 99.8 9.8E-20 3.4E-24 120.9 4.3 73 3-78 5-77 (87)
21 1lbd_A RXR_LBD, retinoid X rec 93.8 0.011 3.9E-07 45.4 0.0 21 64-84 13-33 (282)
22 3o36_A Transcription intermedi 75.6 2.3 7.7E-05 30.5 3.3 48 3-65 5-52 (184)
23 3u5n_A E3 ubiquitin-protein li 70.0 3.5 0.00012 30.2 3.2 48 3-65 8-55 (207)
24 2iqj_A Stromal membrane-associ 55.0 1.5 5E-05 30.5 -1.2 30 2-31 27-59 (134)
25 2crr_A Stromal membrane-associ 53.5 2.2 7.4E-05 29.9 -0.6 31 2-32 29-62 (141)
26 2olm_A Nucleoporin-like protei 53.0 2 6.8E-05 30.0 -0.8 30 2-31 25-57 (140)
27 2crw_A ARF GAP 3, ADP-ribosyla 51.7 2.3 8E-05 30.0 -0.6 31 2-32 29-62 (149)
28 2llg_A Uncharacterized protein 49.9 12 0.0004 26.0 2.7 34 104-137 33-66 (143)
29 2p57_A GTPase-activating prote 49.5 2.4 8.2E-05 29.9 -0.9 31 2-32 37-70 (144)
30 3dwd_A ADP-ribosylation factor 48.9 2.5 8.6E-05 29.9 -0.8 30 2-31 38-70 (147)
31 2owa_A Arfgap-like finger doma 48.6 2.3 7.7E-05 29.7 -1.1 31 2-32 36-69 (138)
32 3sub_A ADP-ribosylation factor 43.3 3.1 0.0001 29.9 -1.1 30 2-31 22-54 (163)
33 3j21_g 50S ribosomal protein L 39.0 8.6 0.00029 22.2 0.6 21 4-27 16-36 (51)
34 3o47_A ADP-ribosylation factor 38.6 5.2 0.00018 31.0 -0.6 31 2-32 37-70 (329)
35 2lri_C Autoimmune regulator; Z 37.3 13 0.00044 22.3 1.2 21 4-29 14-34 (66)
36 2yqp_A Probable ATP-dependent 37.0 10 0.00035 22.5 0.7 15 3-23 20-34 (60)
37 2vut_I AREA, nitrogen regulato 36.7 5.7 0.0002 22.1 -0.4 29 3-31 2-34 (43)
38 1weo_A Cellulose synthase, cat 34.7 15 0.00053 23.7 1.3 22 3-26 17-42 (93)
39 2ku3_A Bromodomain-containing 34.5 17 0.0006 22.0 1.5 50 3-64 17-66 (71)
40 2l43_A N-teminal domain from h 32.8 20 0.00067 22.7 1.6 50 3-64 26-75 (88)
41 2lbm_A Transcriptional regulat 32.4 7.8 0.00027 27.1 -0.4 30 3-32 15-53 (142)
42 2puy_A PHD finger protein 21A; 29.7 26 0.00089 20.2 1.7 23 3-30 6-28 (60)
43 1d4u_A Nucleotide excision rep 28.8 15 0.00052 24.6 0.5 26 3-28 6-35 (111)
44 1we9_A PHD finger family prote 28.8 32 0.0011 19.9 2.0 53 3-65 7-59 (64)
45 2k4x_A 30S ribosomal protein S 28.5 29 0.001 20.0 1.7 24 3-26 19-43 (55)
46 2yt5_A Metal-response element- 28.0 24 0.00084 20.5 1.4 53 3-64 7-61 (66)
47 3lju_X ARF-GAP with dual PH do 27.9 8.6 0.00029 30.8 -1.0 31 2-32 34-67 (386)
48 1rij_A E6APN1 peptide; Trp-CAG 27.6 27 0.00092 16.8 1.2 11 128-138 2-12 (26)
49 3dfx_A Trans-acting T-cell-spe 26.5 14 0.00049 22.2 0.1 31 2-32 7-41 (63)
50 1gnf_A Transcription factor GA 26.5 16 0.00056 20.5 0.3 31 2-32 4-38 (46)
51 2l1q_A Liver-expressed antimic 26.3 25 0.00086 19.2 1.0 31 29-67 4-34 (40)
52 3jue_A Arfgap with coiled-coil 25.7 11 0.00036 29.8 -0.8 30 2-31 45-77 (368)
53 1xwh_A Autoimmune regulator; P 25.5 32 0.0011 20.3 1.5 48 3-65 9-56 (66)
54 2k16_A Transcription initiatio 24.8 28 0.00096 20.9 1.2 25 4-30 20-44 (75)
55 1zfo_A LAsp-1; LIM domain, zin 24.5 26 0.0009 17.5 0.9 11 1-11 2-12 (31)
56 1f62_A Transcription factor WS 24.2 34 0.0012 18.8 1.4 24 4-29 2-25 (51)
57 2yql_A PHD finger protein 21A; 24.2 36 0.0012 19.3 1.6 22 3-29 10-31 (56)
58 2jne_A Hypothetical protein YF 23.9 33 0.0011 22.5 1.5 32 1-33 31-62 (101)
59 1mm2_A MI2-beta; PHD, zinc fin 23.7 46 0.0016 19.3 2.0 47 3-64 10-56 (61)
60 2vpb_A Hpygo1, pygopus homolog 22.6 24 0.00083 21.0 0.6 31 3-34 9-40 (65)
61 1ffk_W Ribosomal protein L37AE 22.4 35 0.0012 21.0 1.3 26 4-29 29-55 (73)
62 2xb1_A Pygopus homolog 2, B-ce 21.8 27 0.00092 22.8 0.7 53 3-65 4-62 (105)
63 1fp0_A KAP-1 corepressor; PHD 21.4 43 0.0015 21.3 1.6 47 3-64 26-72 (88)
64 2ro1_A Transcription intermedi 20.2 51 0.0017 23.6 2.0 48 2-64 2-49 (189)
65 3jyw_9 60S ribosomal protein L 20.0 48 0.0016 20.4 1.6 24 4-27 28-52 (72)
No 1
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=99.98 E-value=1.9e-34 Score=194.87 Aligned_cols=85 Identities=46% Similarity=0.965 Sum_probs=73.0
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||+||+||++||||++..+..+..|..+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 86 (94)
T 1a6y_A 7 VLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRI 86 (94)
T ss_dssp -CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC-
T ss_pred CCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcC
Confidence 46899999999999999999999999999999875444369999999999999999999999999999999999999999
Q ss_pred Cchhh
Q psy16683 82 SNWFK 86 (139)
Q Consensus 82 ~~~~k 86 (139)
++..|
T Consensus 87 ~~~~k 91 (94)
T 1a6y_A 87 PKREK 91 (94)
T ss_dssp -----
T ss_pred cCchh
Confidence 97544
No 2
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=99.97 E-value=6.6e-34 Score=190.42 Aligned_cols=81 Identities=43% Similarity=0.951 Sum_probs=75.8
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+.+|.|||++|+|+||||++|+||++||||++..+ ..+.|+.+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 85 (89)
T 2ebl_A 7 GIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRN-LTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGSG 85 (89)
T ss_dssp SCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTT-CCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSCSCC
T ss_pred CCCCcEeCCCCcceEeCchhhHHhhhhhheeeeec-cceecccCccCCcCccCccccccchHHHhhhccCCHHHcccCCC
Confidence 46799999999999999999999999999999864 45789999999999999999999999999999999999999999
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
+.
T Consensus 86 ~~ 87 (89)
T 2ebl_A 86 PS 87 (89)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 3
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=99.97 E-value=7.4e-34 Score=186.02 Aligned_cols=77 Identities=39% Similarity=0.965 Sum_probs=71.3
Q ss_pred cCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 4 TCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 4 ~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+|.|||++|+|+||||+||+||++||||++..+ ..+.|+.+++|.+++..++.|++|||+||+++||++++||++||
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKN-HMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTT-CCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecc-cCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 699999999999999999999999999999864 45799999999999999999999999999999999999999997
No 4
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=99.97 E-value=1.3e-33 Score=187.98 Aligned_cols=81 Identities=43% Similarity=0.949 Sum_probs=71.4
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||+||+||++||||++..+ ..+.|..+++|.++...++.|++|||+||+++||++++||++|+
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKN-MVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN 82 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTT-CCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC--
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcc-cceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhccc
Confidence 35799999999999999999999999999999864 45789999999999999999999999999999999999999999
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
++
T Consensus 83 ~~ 84 (86)
T 1dsz_A 83 KK 84 (86)
T ss_dssp --
T ss_pred cc
Confidence 85
No 5
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=99.97 E-value=1.1e-33 Score=187.98 Aligned_cols=80 Identities=36% Similarity=0.975 Sum_probs=74.8
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+.+|.|||++|+|+||||+||+||++||||++..+ ..+.|+.+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 5 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 83 (85)
T 1dsz_B 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKD-LTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 83 (85)
T ss_dssp CEECTTTCCEESSEETTEECCHHHHHHHHHHHHHT-CCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCCC
T ss_pred CCCCCEeCCCCCceeeCccchHHHHHHHHHhhccc-cceeecccccccccccccccCcchhHHHHhHcCCCHHHhhcccC
Confidence 45799999999999999999999999999999864 45789999999999999999999999999999999999999998
Q ss_pred C
Q psy16683 82 S 82 (139)
Q Consensus 82 ~ 82 (139)
+
T Consensus 84 ~ 84 (85)
T 1dsz_B 84 R 84 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 6
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=99.97 E-value=3.3e-33 Score=190.35 Aligned_cols=82 Identities=35% Similarity=0.939 Sum_probs=69.5
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||++|+||++||||++..+ ..+.|+.+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 81 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKD-LTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ 81 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTT-CCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC----
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhccc-cccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhccc
Confidence 46799999999999999999999999999999864 45789999999999999999999999999999999999999999
Q ss_pred Cch
Q psy16683 82 SNW 84 (139)
Q Consensus 82 ~~~ 84 (139)
+..
T Consensus 82 ~~~ 84 (99)
T 1ynw_B 82 RGK 84 (99)
T ss_dssp ---
T ss_pred ccc
Confidence 863
No 7
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=99.97 E-value=3.7e-33 Score=185.03 Aligned_cols=80 Identities=48% Similarity=1.014 Sum_probs=66.6
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||+||+||++||||++..+ ..+.|+.+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGH-NDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSC-CCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred CCcCcEECCCCCCeeeCccchHHhhhhhhhccccc-cccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 46799999999999999999999999999999874 45789999999999999999999999999999999999999996
Q ss_pred C
Q psy16683 82 S 82 (139)
Q Consensus 82 ~ 82 (139)
.
T Consensus 83 g 83 (84)
T 1hcq_A 83 G 83 (84)
T ss_dssp -
T ss_pred C
Confidence 3
No 8
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=99.97 E-value=3.2e-33 Score=188.51 Aligned_cols=81 Identities=38% Similarity=0.943 Sum_probs=73.3
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||+||+||++||||++..+ ..+.|..+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 10 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 88 (93)
T 2han_A 10 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKD-LTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQ 88 (93)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHT-CCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC-
T ss_pred CCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccc-cCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccC
Confidence 45799999999999999999999999999999864 45799999999999999999999999999999999999999999
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
+.
T Consensus 89 ~~ 90 (93)
T 2han_A 89 GI 90 (93)
T ss_dssp --
T ss_pred cc
Confidence 74
No 9
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=99.97 E-value=8.3e-33 Score=188.09 Aligned_cols=81 Identities=43% Similarity=0.891 Sum_probs=75.3
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||+||+||++||||++..+ ..+.|..+++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (98)
T 1lo1_A 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGN-IEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDRV 82 (98)
T ss_dssp CCEETTTTEECSEESSSSEECHHHHHHHHHHHHTT-CCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSCC
T ss_pred CCCCcEeCCCCcCeeeCccchhhhhhhheeeeccc-CccccCccccccccccccccccchhHHHHhHcCCCHHHeecccc
Confidence 46799999999999999999999999999999864 45789999999999988999999999999999999999999998
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
..
T Consensus 83 ~~ 84 (98)
T 1lo1_A 83 RG 84 (98)
T ss_dssp TT
T ss_pred cC
Confidence 74
No 10
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.97 E-value=2.7e-32 Score=182.66 Aligned_cols=79 Identities=41% Similarity=0.846 Sum_probs=73.0
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCCC
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRRS 82 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~~ 82 (139)
.+|.|||++|+|+||||+||+||++||||++..+ ..+.|..+++|.+++..++.|++|||+||+++||++++||.++..
T Consensus 1 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~ 79 (89)
T 1cit_A 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKS-AKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLK 79 (89)
T ss_dssp CCCSSSCCCCCEEETTEEECHHHHHHHHHHHHHT-CCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGT
T ss_pred CCCeEeCCCCcceEeCccchhhhhhhceeeEEec-ceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeeccccc
Confidence 4799999999999999999999999999999864 456899999999999999999999999999999999999987654
No 11
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=99.96 E-value=3.1e-32 Score=189.49 Aligned_cols=81 Identities=41% Similarity=0.902 Sum_probs=75.0
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||+||+||++||||++..+ ..+.|..+++|.++...++.|++|||+||+++||++++||.+|+
T Consensus 9 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq~~R~ 87 (113)
T 2a66_A 9 EELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNN-KRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRM 87 (113)
T ss_dssp -CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTT-CCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCTTCC
T ss_pred CCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhcc-ccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhccccc
Confidence 45799999999999999999999999999999864 45789999999999999999999999999999999999999998
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
..
T Consensus 88 ~~ 89 (113)
T 2a66_A 88 RG 89 (113)
T ss_dssp CS
T ss_pred cC
Confidence 74
No 12
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=99.96 E-value=3.1e-32 Score=191.21 Aligned_cols=81 Identities=40% Similarity=0.851 Sum_probs=75.0
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||++|+||++||||++..+ ..|.|..+++|.+++..++.|++|||+||+++||++++||.+|+
T Consensus 8 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r~ 86 (119)
T 2han_B 8 EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKS-AVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQ 86 (119)
T ss_dssp SCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTT-CCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSSH
T ss_pred CCcCeEeCCcCCcceECchhHHhhHHhhhhheEec-cccccccccccccCccccccchhhHHHHHHHhCCCHHHccchhh
Confidence 46799999999999999999999999999999864 46789999999999999999999999999999999999999988
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
..
T Consensus 87 ~~ 88 (119)
T 2han_B 87 CA 88 (119)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 13
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=99.96 E-value=2.3e-32 Score=183.47 Aligned_cols=81 Identities=37% Similarity=0.846 Sum_probs=73.3
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+.+|.|||++|+|+||||++|+||++||||++..+. .+.|..+++|.++...+..|++|||+||+++||++++||++|+
T Consensus 2 ~~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~-~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~ 80 (90)
T 3g9m_A 2 SHMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQH-NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKK 80 (90)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCC-CCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC-
T ss_pred CCcCccCCCcCcccccCCccchhHhHHhhhhhhcCC-ceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccc
Confidence 468999999999999999999999999999998644 4689999999999999999999999999999999999999998
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
.+
T Consensus 81 ~~ 82 (90)
T 3g9m_A 81 IK 82 (90)
T ss_dssp --
T ss_pred cc
Confidence 75
No 14
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=99.96 E-value=5.6e-32 Score=185.56 Aligned_cols=82 Identities=37% Similarity=0.868 Sum_probs=75.2
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCC-CcccccCCccccccccCcccccccccccceeecccccCcccCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLP-SISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGR 80 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~-~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R 80 (139)
+.+|.|||++|+|+||||+||+||++||||++..+. ..+.|..+++|.++...++.|++|||+||+++||++++||.+|
T Consensus 1 ~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~ 80 (103)
T 2nll_B 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDS 80 (103)
T ss_dssp CCBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHH
T ss_pred CCCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhh
Confidence 368999999999999999999999999999998643 3578999999999999999999999999999999999999998
Q ss_pred CCc
Q psy16683 81 RSN 83 (139)
Q Consensus 81 ~~~ 83 (139)
+..
T Consensus 81 ~~~ 83 (103)
T 2nll_B 81 KRL 83 (103)
T ss_dssp HHH
T ss_pred hhH
Confidence 763
No 15
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=99.96 E-value=2e-31 Score=186.35 Aligned_cols=81 Identities=37% Similarity=0.837 Sum_probs=67.8
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+.+|.|||++|+|+||||.+|+||++||||++..+. .+.|..+++|.++...+..|++|||+||+++||++++||.+|+
T Consensus 29 ~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~-~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~kR~ 107 (117)
T 4hn5_A 29 PKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQH-NYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKK 107 (117)
T ss_dssp -CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCC-CCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC------
T ss_pred CCcCCcCCCcCcccccCCcccchhhhhhhcceecCC-ceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhccccc
Confidence 357999999999999999999999999999998644 5689999999999999999999999999999999999999998
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
.+
T Consensus 108 ~k 109 (117)
T 4hn5_A 108 IK 109 (117)
T ss_dssp --
T ss_pred cc
Confidence 75
No 16
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=99.96 E-value=1.1e-31 Score=185.98 Aligned_cols=81 Identities=43% Similarity=0.914 Sum_probs=74.5
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+.+|.|||++|+|+||||+||+||++||||++..+ ..+.|..+++|.+++..++.|++|||+||+++||++++||.+|+
T Consensus 6 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~ 84 (110)
T 1kb2_A 6 PRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRK-ALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEE 84 (110)
T ss_dssp -CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTT-CCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CCCCcEeCCCCCceEeCchhHhhhhhhheeeeecc-cceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHH
Confidence 46799999999999999999999999999999864 46789999999999999999999999999999999999999887
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
..
T Consensus 85 ~q 86 (110)
T 1kb2_A 85 VQ 86 (110)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 17
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=99.96 E-value=2.1e-31 Score=183.18 Aligned_cols=81 Identities=41% Similarity=0.879 Sum_probs=68.4
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
..+|.|||++|+|+||||++|+||++||||++..+ ..+.|..+++|.+++..++.|++|||+||+++||+++++++.|.
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~-~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k~ 85 (105)
T 1r4i_A 7 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGK-QKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKKL 85 (105)
T ss_dssp CCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSC-CCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC------
T ss_pred CCCCcEeCCCCCceEeCCcchhhhhhhhceeEEec-CceeeccCCccccCccccccchhchHHHHHhhhcccchhhhccc
Confidence 46799999999999999999999999999999864 45789999999999999999999999999999999999999887
Q ss_pred Cc
Q psy16683 82 SN 83 (139)
Q Consensus 82 ~~ 83 (139)
+.
T Consensus 86 ~~ 87 (105)
T 1r4i_A 86 GN 87 (105)
T ss_dssp --
T ss_pred cc
Confidence 64
No 18
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.93 E-value=1.3e-27 Score=197.85 Aligned_cols=83 Identities=45% Similarity=0.947 Sum_probs=74.1
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCC
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRR 81 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~ 81 (139)
+..|.|||++|+|+||||.+|+||++||||++..+..+..|. ++|.+++..++.|++|||+||+++||++++||++|+
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c~--~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~ 127 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCD--LNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRM 127 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCCC--SCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCC
T ss_pred CCcCeECCCcCCCCccCcccchhhhHHHccchhccccccccc--CCCCcccccCccchhhhHHHHhhcccchhheecccc
Confidence 457999999999999999999999999999998755444573 679999999999999999999999999999999999
Q ss_pred Cchhh
Q psy16683 82 SNWFK 86 (139)
Q Consensus 82 ~~~~k 86 (139)
+...|
T Consensus 128 ~~~~k 132 (419)
T 3dzy_D 128 PQAEK 132 (419)
T ss_dssp TTTTG
T ss_pred ccccc
Confidence 86544
No 19
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.93 E-value=1.3e-27 Score=200.47 Aligned_cols=80 Identities=36% Similarity=0.973 Sum_probs=74.5
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCcccCCCC
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRYGRRS 82 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~~R~~ 82 (139)
..|.|||++|+|+||||.+|+|||+||||++..+ ..|.|+.+++|.+++..++.|++|||+||+++||++++||++|+.
T Consensus 138 ~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~-~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~ 216 (467)
T 3dzy_A 138 HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKD-LTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 216 (467)
T ss_dssp EECTTTSSEECSEETTEECCHHHHHHHHHHHHTT-CCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCC
T ss_pred CcceeCCCCCCCCcCCCcchhhhhHhccccccCC-CceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccccc
Confidence 3599999999999999999999999999999864 456899999999999999999999999999999999999999987
Q ss_pred c
Q psy16683 83 N 83 (139)
Q Consensus 83 ~ 83 (139)
.
T Consensus 217 ~ 217 (467)
T 3dzy_A 217 G 217 (467)
T ss_dssp C
T ss_pred c
Confidence 5
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.78 E-value=9.8e-20 Score=120.89 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=62.2
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccccceeecccccCccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCLMVGMSKSGSRY 78 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl~~GM~~~~vq~ 78 (139)
.+......+++|.||+++ |.+|++||||++. ...|.|+.+++|.|++..++.|++|||+|||+|||....+..
T Consensus 5 ~p~p~p~~p~~g~h~c~v-Cgd~asfFRRt~~--~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~~ 77 (87)
T 2lze_A 5 VPYPDPLEPRGGKHICAI-CGNNAEDYKHTDM--DLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGGS 77 (87)
T ss_dssp CSSCCTTCCSCCSSSCSS-SSSSSSSCTTTTT--SCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCCC
T ss_pred CCCCCCcCCCCCCEEccC-CCCccceECcccC--CCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCcc
Confidence 345566678999999997 9999999999864 345789999999999999999999999999999998765443
No 21
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=93.76 E-value=0.011 Score=45.45 Aligned_cols=21 Identities=5% Similarity=-0.122 Sum_probs=0.0
Q ss_pred ccceeecccccCcccCCCCch
Q psy16683 64 RKCLMVGMSKSGSRYGRRSNW 84 (139)
Q Consensus 64 ~KCl~~GM~~~~vq~~R~~~~ 84 (139)
.||+++||+.++||.+|++..
T Consensus 13 ~kCl~vGMkkeaVq~~R~~~~ 33 (282)
T 1lbd_A 13 GLVPRGSHKREAVQEERQRGK 33 (282)
T ss_dssp ---------------------
T ss_pred CCcCccCCcHHhhcCCCCCCC
Confidence 589999999999999998763
No 22
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=75.59 E-value=2.3 Score=30.53 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=29.1
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCccccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRK 65 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~K 65 (139)
..|.||++.+. .+.|.+|..-|-- .|-.... .....+.+.|..|+-.+
T Consensus 5 ~~C~~C~~~g~-----ll~Cd~C~~~~H~---------~C~~p~l-~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNGGE-----LLCCEKCPKVFHL---------SCHVPTL-TNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCCSS-----CEECSSSSCEECT---------TTSSSCC-SSCCSSCCCCTTTSCSS
T ss_pred CccccCCCCCe-----eeecCCCCcccCc---------cccCCCC-CCCCCCCEECccccCcc
Confidence 45999997754 7889999855421 3422111 11123567899888655
No 23
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=70.01 E-value=3.5 Score=30.18 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=28.8
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCccccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRK 65 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~K 65 (139)
..|.||++.+. .+.|.+|..-|- ..|-.... .....+.+.|..|+-..
T Consensus 8 ~~C~~C~~~g~-----ll~Cd~C~~~~H---------~~Cl~p~l-~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 8 DWCAVCQNGGD-----LLCCEKCPKVFH---------LTCHVPTL-LSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSBTTTCCCEE-----EEECSSSSCEEC---------TTTSSSCC-SSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCc-----eEEcCCCCCccC---------CccCCCCC-CCCCCCCEEeCceeCcc
Confidence 45999997652 788999985541 13432110 11224567899887654
No 24
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=54.98 E-value=1.5 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.701 Sum_probs=24.4
Q ss_pred CCcCcccCCCC---ceeeeccccccccccceee
Q psy16683 2 NQTCKVCGEPA---AGFHFGAFTCEGCKSFFGR 31 (139)
Q Consensus 2 ~~~C~vC~~~a---~g~hyGv~sC~~C~~FFrR 31 (139)
|..|.-||.+. ....||++.|-.|++..|.
T Consensus 27 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 59 (134)
T 2iqj_A 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRN 59 (134)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhc
Confidence 56799999764 3579999999999998765
No 25
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.49 E-value=2.2 Score=29.90 Aligned_cols=31 Identities=26% Similarity=0.659 Sum_probs=24.8
Q ss_pred CCcCcccCCCC---ceeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPA---AGFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a---~g~hyGv~sC~~C~~FFrR~ 32 (139)
|..|.-||.+. ....||++.|-.|++..|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 56799999654 25799999999999987653
No 26
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=53.01 E-value=2 Score=30.03 Aligned_cols=30 Identities=23% Similarity=0.682 Sum_probs=24.3
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGR 31 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR 31 (139)
|..|.-||.+.- ...||++.|-.|++..|.
T Consensus 25 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSSCCCEEETTTTEEECHHHHHHHTT
T ss_pred CCcCCCCCCCCCCceeeccCEEEchhccchhcc
Confidence 567999997543 579999999999998754
No 27
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.66 E-value=2.3 Score=30.05 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=25.1
Q ss_pred CCcCcccCCCC---ceeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPA---AGFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a---~g~hyGv~sC~~C~~FFrR~ 32 (139)
|..|.-||.+. ....||++.|-.|++..|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 29 NKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 67899999654 35799999999999987653
No 28
>2llg_A Uncharacterized protein; GUT microbiome secreted protein, structural genomics, joint for structural genomics, JCSG, PSI-biology; NMR {Enterococcus faecalis}
Probab=49.92 E-value=12 Score=26.01 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=29.8
Q ss_pred ccccCCCCceeeccCCCCCCceeeeHHHHHHHhh
Q psy16683 104 RTKLGHPDLLLKLDKFTNNNTIVTNNNLILQLLQ 137 (139)
Q Consensus 104 ~~~~g~p~~i~~~~~~~~~~~~id~~~L~~q~~~ 137 (139)
..+-|.|.|.+|++-..+++..+|++.++.-|++
T Consensus 33 ~~~~gKpif~l~fdvTN~S~Keqd~~~~~~s~v~ 66 (143)
T 2llg_A 33 KDYQGKPMFYVLFELTNTTEKTQNIQLMIQSFME 66 (143)
T ss_dssp CCTTSSSCEECCBCCCCCSSCCCBSHHHHHHHCC
T ss_pred cccCCCEEEEEEEEeccCcccccccccceeEEEE
Confidence 4556899999999988889999999999998875
No 29
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=49.52 E-value=2.4 Score=29.86 Aligned_cols=31 Identities=26% Similarity=0.698 Sum_probs=24.8
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR~ 32 (139)
|..|.-||.+.- ...||++.|..|++.-|..
T Consensus 37 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 70 (144)
T 2p57_A 37 NKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 70 (144)
T ss_dssp GGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCC
Confidence 567999996543 5799999999999987653
No 30
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=48.93 E-value=2.5 Score=29.87 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=24.6
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGR 31 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR 31 (139)
|..|.-||.+.- ...||++.|..|++.-|.
T Consensus 38 N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~ 70 (147)
T 3dwd_A 38 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRG 70 (147)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccCCCCCCCCCeEEecccEeEhHhhChHHhc
Confidence 567999997643 579999999999998764
No 31
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=48.60 E-value=2.3 Score=29.73 Aligned_cols=31 Identities=29% Similarity=0.623 Sum_probs=24.7
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR~ 32 (139)
|..|.-||.+.- ...||++.|-.|++.-|..
T Consensus 36 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 36 NRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred CCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 567999996543 5799999999999987653
No 32
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=43.35 E-value=3.1 Score=29.93 Aligned_cols=30 Identities=27% Similarity=0.654 Sum_probs=24.4
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGR 31 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR 31 (139)
|..|.-||.+.- ...||++.|..|++.-|.
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcC
Confidence 467999997643 579999999999998765
No 33
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.99 E-value=8.6 Score=22.21 Aligned_cols=21 Identities=33% Similarity=0.795 Sum_probs=15.2
Q ss_pred cCcccCCCCceeeecccccccccc
Q psy16683 4 TCKVCGEPAAGFHFGAFTCEGCKS 27 (139)
Q Consensus 4 ~C~vC~~~a~g~hyGv~sC~~C~~ 27 (139)
.|..|+.. .+.|++.|+-|..
T Consensus 16 iCpkC~a~---~~~gaw~CrKCG~ 36 (51)
T 3j21_g 16 VCLRCGAT---NPWGAKKCRKCGY 36 (51)
T ss_dssp ECTTTCCE---ECTTCSSCSSSSS
T ss_pred cCCCCCCc---CCCCceecCCCCC
Confidence 57777765 6778888887763
No 34
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=38.60 E-value=5.2 Score=30.98 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=25.4
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR~ 32 (139)
|..|.-||.+.- ...||++.|..|++..|..
T Consensus 37 n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 37 NNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 70 (329)
T ss_dssp TTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEecCCEEEChhhhhhhccc
Confidence 567999997543 4799999999999988763
No 35
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=37.28 E-value=13 Score=22.31 Aligned_cols=21 Identities=33% Similarity=0.982 Sum_probs=16.5
Q ss_pred cCcccCCCCceeeeccccccccccce
Q psy16683 4 TCKVCGEPAAGFHFGAFTCEGCKSFF 29 (139)
Q Consensus 4 ~C~vC~~~a~g~hyGv~sC~~C~~FF 29 (139)
.|.||++.+. .+.|.+|...|
T Consensus 14 ~C~vC~~~~~-----ll~Cd~C~~~~ 34 (66)
T 2lri_C 14 RCGVCGDGTD-----VLRCTHCAAAF 34 (66)
T ss_dssp CCTTTSCCTT-----CEECSSSCCEE
T ss_pred CcCCCCCCCe-----EEECCCCCCce
Confidence 5999997653 78899998655
No 36
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.96 E-value=10 Score=22.52 Aligned_cols=15 Identities=40% Similarity=1.365 Sum_probs=10.9
Q ss_pred CcCcccCCCCceeeecccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCE 23 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~ 23 (139)
+.|.||| .||.+.|.
T Consensus 20 PvCvvCG------ryGeYICd 34 (60)
T 2yqp_A 20 PICVVCG------RYGEYICD 34 (60)
T ss_dssp CCCSSSS------SCCSEECS
T ss_pred ceEEEec------Cccceeec
Confidence 3588888 57777775
No 37
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=36.73 E-value=5.7 Score=22.07 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=19.7
Q ss_pred CcCcccCCCCce----eeeccccccccccceee
Q psy16683 3 QTCKVCGEPAAG----FHFGAFTCEGCKSFFGR 31 (139)
Q Consensus 3 ~~C~vC~~~a~g----~hyGv~sC~~C~~FFrR 31 (139)
..|..|+....- --.|..-|+||..+|+.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~ 34 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKL 34 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHH
Confidence 468888865331 23577779999988754
No 38
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.65 E-value=15 Score=23.74 Aligned_cols=22 Identities=36% Similarity=1.013 Sum_probs=14.0
Q ss_pred CcCcccCCC----Cceeeeccccccccc
Q psy16683 3 QTCKVCGEP----AAGFHFGAFTCEGCK 26 (139)
Q Consensus 3 ~~C~vC~~~----a~g~hyGv~sC~~C~ 26 (139)
+.|.|||+. +.|--| ++|..|+
T Consensus 17 qiCqiCGD~VG~~~~Ge~F--VAC~eC~ 42 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLF--VACNECG 42 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBC--CSCSSSC
T ss_pred CccccccCccccCCCCCEE--EeeeccC
Confidence 479999976 344433 3566665
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=34.52 E-value=17 Score=22.04 Aligned_cols=50 Identities=16% Similarity=0.368 Sum_probs=29.2
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~ 64 (139)
..|.||++..+...=..+.|.+|...|-- .|-+-.. ...+.+.|..|+..
T Consensus 17 ~~C~vC~~~~s~~~~~ll~CD~C~~~~H~---------~Cl~~~~---vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 17 AVCSICMDGESQNSNVILFCDMCNLAVHQ---------ECYGVPY---IPEGQWLCRHCLQS 66 (71)
T ss_dssp CSCSSSCCCCCCSSSCEEECSSSCCEEEH---------HHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCcccc---------ccCCCCc---CCCCCcCCccCcCc
Confidence 46999987753333356779999865422 2322111 12356788888654
No 40
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=32.82 E-value=20 Score=22.67 Aligned_cols=50 Identities=16% Similarity=0.368 Sum_probs=30.2
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~ 64 (139)
..|.||++..+...=-.+.|.+|...|-- .|-+-.. ...+.+.|..|...
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~---------~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQ---------ECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCH---------HHHTCSS---CCSSCCCCHHHHHH
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhc---------ccCCCCc---cCCCceECccccCc
Confidence 46999998764333356789999865422 3422211 23456888888654
No 41
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.40 E-value=7.8 Score=27.08 Aligned_cols=30 Identities=20% Similarity=0.676 Sum_probs=23.3
Q ss_pred CcCcccCCCCc-------eee--eccccccccccceeee
Q psy16683 3 QTCKVCGEPAA-------GFH--FGAFTCEGCKSFFGRS 32 (139)
Q Consensus 3 ~~C~vC~~~a~-------g~h--yGv~sC~~C~~FFrR~ 32 (139)
..|..||...+ -.| +++..|..|+.||.-.
T Consensus 15 i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 15 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 35999997652 347 9999999999988544
No 42
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=29.67 E-value=26 Score=20.17 Aligned_cols=23 Identities=22% Similarity=0.780 Sum_probs=17.5
Q ss_pred CcCcccCCCCceeeecccccccccccee
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFG 30 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFr 30 (139)
..|.||++.+ ..+.|.+|...|-
T Consensus 6 ~~C~vC~~~g-----~ll~Cd~C~~~fH 28 (60)
T 2puy_A 6 DFCSVCRKSG-----QLLMCDTCSRVYH 28 (60)
T ss_dssp SSCTTTCCCS-----SCEECSSSSCEEC
T ss_pred CCCcCCCCCC-----cEEEcCCCCcCEE
Confidence 4699999853 4778999997663
No 43
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=28.82 E-value=15 Score=24.56 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=19.2
Q ss_pred CcCcccCCCC---c-eeeeccccccccccc
Q psy16683 3 QTCKVCGEPA---A-GFHFGAFTCEGCKSF 28 (139)
Q Consensus 3 ~~C~vC~~~a---~-g~hyGv~sC~~C~~F 28 (139)
..|.-||..- . -.|||+..|++|+.-
T Consensus 6 ~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 6 VICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp EECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CccccCCChhhHHHHHHhCCeeechhhccc
Confidence 3588898642 2 359999999999854
No 44
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=28.76 E-value=32 Score=19.92 Aligned_cols=53 Identities=23% Similarity=0.501 Sum_probs=29.4
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCccccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRK 65 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~K 65 (139)
..|.+|+.+..... -.+.|..|..+|=- .|-+-..=.......+.|..|+-++
T Consensus 7 ~~C~~C~~~~~~~~-~mI~Cd~C~~WfH~---------~Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 7 GQCGACGESYAADE-FWICCDLCEMWFHG---------KCVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCSSSCCCCCSSS-CEEECSSSCCEEET---------TTTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCccCCCC-CEEEccCCCCCCCc---------cccCcChhHhcCCCcEECCCCcCcC
Confidence 45889998753211 24679999877633 3432111111112457888887655
No 45
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=28.48 E-value=29 Score=20.03 Aligned_cols=24 Identities=25% Similarity=0.689 Sum_probs=16.0
Q ss_pred CcCcccCCCC-ceeeeccccccccc
Q psy16683 3 QTCKVCGEPA-AGFHFGAFTCEGCK 26 (139)
Q Consensus 3 ~~C~vC~~~a-~g~hyGv~sC~~C~ 26 (139)
..|+-||..- -..|++.+.|..|.
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTC
T ss_pred ccCcCCCCceeEeccCCEEECCCCC
Confidence 4588888632 34677777777775
No 46
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.01 E-value=24 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.461 Sum_probs=29.3
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCcccc--ccccCcccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECI--INKKNRTSCKSCRLR 64 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~--i~~~~~~~Ck~CRl~ 64 (139)
..|.||+...+...=-.+.|.+|...|-- .|-.-..=. +...+.+.|..|...
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~---------~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQ---------LCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEET---------TTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHh---------hhCCCcccccccCCCCCEECCCCcCc
Confidence 46999997643322245679999865521 242211000 113456788888654
No 47
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=27.91 E-value=8.6 Score=30.79 Aligned_cols=31 Identities=29% Similarity=0.829 Sum_probs=25.0
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR~ 32 (139)
|..|.-||.+.- ...||++.|..|++.-|..
T Consensus 34 N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 34 NARCADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp GSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CCcCccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 567999997643 5799999999999977653
No 48
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=27.56 E-value=27 Score=16.81 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=9.1
Q ss_pred eHHHHHHHhhC
Q psy16683 128 NNNLILQLLQN 138 (139)
Q Consensus 128 ~~~L~~q~~~~ 138 (139)
++.|+.||+.+
T Consensus 2 lqellgqwlkd 12 (26)
T 1rij_A 2 LQELLGQWLKD 12 (26)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 57899999875
No 49
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=26.53 E-value=14 Score=22.16 Aligned_cols=31 Identities=16% Similarity=0.484 Sum_probs=20.8
Q ss_pred CCcCcccCCCCc----eeeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPAA----GFHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a~----g~hyGv~sC~~C~~FFrR~ 32 (139)
...|..|+.... .-..|..-|+||..+|+..
T Consensus 7 ~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~ 41 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLH 41 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHH
T ss_pred CCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHc
Confidence 356888886533 1245777799999888653
No 50
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=26.48 E-value=16 Score=20.45 Aligned_cols=31 Identities=23% Similarity=0.604 Sum_probs=20.0
Q ss_pred CCcCcccCCCCce----eeeccccccccccceeee
Q psy16683 2 NQTCKVCGEPAAG----FHFGAFTCEGCKSFFGRS 32 (139)
Q Consensus 2 ~~~C~vC~~~a~g----~hyGv~sC~~C~~FFrR~ 32 (139)
...|..|+....- -..|..-|+||..+|+..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 4568888865331 124667799999877553
No 51
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=26.31 E-value=25 Score=19.15 Aligned_cols=31 Identities=35% Similarity=0.805 Sum_probs=19.5
Q ss_pred eeeeeecCCCcccccCCccccccccCcccccccccccce
Q psy16683 29 FGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRKCL 67 (139)
Q Consensus 29 FrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~KCl 67 (139)
|+|.+..+..-..|+.+..|. -+.||..+|-
T Consensus 4 ~WR~vs~kP~GA~Crd~~EC~--------T~lCR~~~cs 34 (40)
T 2l1q_A 4 FWRGVSLRPIGASCRDDSECI--------TRLCRKRRCS 34 (40)
T ss_dssp TTSSCSSBCTTSBCSSGGGBT--------TSCEETTEEC
T ss_pred hhhhhcCCccchhhccchhhh--------hHHhcCCCcc
Confidence 567666555445677766764 3567777773
No 52
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=25.68 E-value=11 Score=29.85 Aligned_cols=30 Identities=30% Similarity=0.679 Sum_probs=24.4
Q ss_pred CCcCcccCCCCc---eeeeccccccccccceee
Q psy16683 2 NQTCKVCGEPAA---GFHFGAFTCEGCKSFFGR 31 (139)
Q Consensus 2 ~~~C~vC~~~a~---g~hyGv~sC~~C~~FFrR 31 (139)
|..|.-||.+.- ...||++.|..|++..|-
T Consensus 45 n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~ 77 (368)
T 3jue_A 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRS 77 (368)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHH
T ss_pred cCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhc
Confidence 667999997542 579999999999988764
No 53
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=25.46 E-value=32 Score=20.26 Aligned_cols=48 Identities=25% Similarity=0.558 Sum_probs=28.6
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCccccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLRK 65 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~K 65 (139)
..|.||++.. -.+.|.+|...|-- .|-....=.+ ..+.+.|..|...+
T Consensus 9 ~~C~vC~~~g-----~ll~CD~C~~~fH~---------~Cl~ppl~~~-P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 9 DECAVCRDGG-----ELICCDGCPRAFHL---------ACLSPPLREI-PSGTWRCSSCLQAT 56 (66)
T ss_dssp CSBSSSSCCS-----SCEECSSCCCEECT---------TTSSSCCSSC-CSSCCCCHHHHHTC
T ss_pred CCCccCCCCC-----CEEEcCCCChhhcc---------cccCCCcCcC-CCCCeECccccCcc
Confidence 4699999753 47789999866522 2422111011 23567888887554
No 54
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=24.79 E-value=28 Score=20.86 Aligned_cols=25 Identities=24% Similarity=0.834 Sum_probs=18.0
Q ss_pred cCcccCCCCceeeecccccccccccee
Q psy16683 4 TCKVCGEPAAGFHFGAFTCEGCKSFFG 30 (139)
Q Consensus 4 ~C~vC~~~a~g~hyGv~sC~~C~~FFr 30 (139)
.|.||+....+- ..+.|..|..+|-
T Consensus 20 ~C~~C~~~~~~~--~mi~CD~C~~wfH 44 (75)
T 2k16_A 20 ICPGCNKPDDGS--PMIGCDDCDDWYH 44 (75)
T ss_dssp CBTTTTBCCSSC--CEEECSSSSSEEE
T ss_pred CCCCCCCCCCCC--CEEEcCCCCcccc
Confidence 599999876432 2578999987763
No 55
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=24.46 E-value=26 Score=17.51 Aligned_cols=11 Identities=45% Similarity=1.035 Sum_probs=7.2
Q ss_pred CCCcCcccCCC
Q psy16683 1 MNQTCKVCGEP 11 (139)
Q Consensus 1 ~~~~C~vC~~~ 11 (139)
|+..|..|++.
T Consensus 2 m~~~C~~C~k~ 12 (31)
T 1zfo_A 2 MNPNCARCGKI 12 (31)
T ss_dssp CCCBCSSSCSB
T ss_pred CCCcCCccCCE
Confidence 55677777754
No 56
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.23 E-value=34 Score=18.83 Aligned_cols=24 Identities=29% Similarity=0.736 Sum_probs=16.8
Q ss_pred cCcccCCCCceeeeccccccccccce
Q psy16683 4 TCKVCGEPAAGFHFGAFTCEGCKSFF 29 (139)
Q Consensus 4 ~C~vC~~~a~g~hyGv~sC~~C~~FF 29 (139)
.|.||++...+- -.+.|.+|...|
T Consensus 2 ~C~vC~~~~~~~--~ll~Cd~C~~~~ 25 (51)
T 1f62_A 2 RCKVCRKKGEDD--KLILCDECNKAF 25 (51)
T ss_dssp CCTTTCCSSCCS--CCEECTTTCCEE
T ss_pred CCCCCCCCCCCC--CEEECCCCChhh
Confidence 589999775422 357799998655
No 57
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.21 E-value=36 Score=19.26 Aligned_cols=22 Identities=23% Similarity=0.836 Sum_probs=16.8
Q ss_pred CcCcccCCCCceeeeccccccccccce
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFF 29 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FF 29 (139)
..|.||++.. -.+.|.+|...|
T Consensus 10 ~~C~vC~~~g-----~ll~Cd~C~~~~ 31 (56)
T 2yql_A 10 DFCSVCRKSG-----QLLMCDTCSRVY 31 (56)
T ss_dssp CSCSSSCCSS-----CCEECSSSSCEE
T ss_pred CCCccCCCCC-----eEEEcCCCCcce
Confidence 4699999753 477899998766
No 58
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.89 E-value=33 Score=22.49 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=19.8
Q ss_pred CCCcCcccCCCCceeeeccccccccccceeeee
Q psy16683 1 MNQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSY 33 (139)
Q Consensus 1 ~~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~ 33 (139)
|...|++|+.+-.- --|...|.+|...|+...
T Consensus 31 M~~~CP~Cq~eL~~-~g~~~hC~~C~~~f~~~a 62 (101)
T 2jne_A 31 MELHCPQCQHVLDQ-DNGHARCRSCGEFIEMKA 62 (101)
T ss_dssp CCCBCSSSCSBEEE-ETTEEEETTTCCEEEEEE
T ss_pred ccccCccCCCccee-cCCEEECccccchhhccc
Confidence 55679999876211 112224999998886644
No 59
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=23.74 E-value=46 Score=19.27 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=27.1
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~ 64 (139)
..|.||++.. -.+.|.+|...|--. |-.... .....+.+.|..|+-+
T Consensus 10 ~~C~vC~~~g-----~ll~Cd~C~~~fH~~---------Cl~ppl-~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDGG-----ELLCCDTCPSSYHIH---------CLNPPL-PEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCCS-----SCBCCSSSCCCBCSS---------SSSSCC-SSCCSSCCCCTTTTTT
T ss_pred CcCCCCCCCC-----CEEEcCCCCHHHccc---------ccCCCc-CcCCCCccCChhhcCc
Confidence 4699999743 478899998655322 322110 0112346788888643
No 60
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.62 E-value=24 Score=20.97 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=21.3
Q ss_pred CcCcccCCCCceeeecccccc-ccccceeeeee
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCE-GCKSFFGRSYN 34 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~-~C~~FFrR~~~ 34 (139)
.+|.+|+.+...-. ..+.|. +|..+|-+.-.
T Consensus 9 ~~C~~C~~p~~~~~-~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 9 YPCGICTNEVNDDQ-DAILCEASCQKWFHRICT 40 (65)
T ss_dssp CBCTTTCSBCCTTS-CEEEBTTTTCCEEEHHHH
T ss_pred CcCccCCCccCCCC-CeEecccCccccCchhcc
Confidence 46999998754322 346898 99988866543
No 61
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=22.40 E-value=35 Score=21.02 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=18.1
Q ss_pred cCcccCCCCc-eeeeccccccccccce
Q psy16683 4 TCKVCGEPAA-GFHFGAFTCEGCKSFF 29 (139)
Q Consensus 4 ~C~vC~~~a~-g~hyGv~sC~~C~~FF 29 (139)
.|..||..+- -.--|++.|+.|.--|
T Consensus 29 ~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 29 KCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred cCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 5888887554 3567888888887433
No 62
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=21.84 E-value=27 Score=22.75 Aligned_cols=53 Identities=25% Similarity=0.577 Sum_probs=29.8
Q ss_pred CcCcccCCCCceeeecccccc-ccccceeeeeecCCCcccccCCccc---cc--cccCccccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCE-GCKSFFGRSYNNLPSISECKNNNEC---II--NKKNRTSCKSCRLRK 65 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~-~C~~FFrR~~~~~~~~~~C~~~~~C---~i--~~~~~~~Ck~CRl~K 65 (139)
.+|.+|+.+-..... .+.|. .|..+|-.. |-+-..= .+ .....+.|..|+-.+
T Consensus 4 ~~C~iC~~p~~~~~~-mi~Cdd~C~~WfH~~---------CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQD-AILCEASCQKWFHRE---------CTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSC-EEECTTTTCCEEEGG---------GTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCC-EEEecCCcccccccc---------cCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 469999988432222 45566 999877443 3221100 00 122467899888664
No 63
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.36 E-value=43 Score=21.29 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=28.6
Q ss_pred CcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccc
Q psy16683 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64 (139)
Q Consensus 3 ~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~ 64 (139)
..|.||++.+ ..+.|.+|-..|-- .|-.... .....+.+.|..|+..
T Consensus 26 ~~C~vC~~~g-----~LL~CD~C~~~fH~---------~Cl~PpL-~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKPG-----DLVMCNQCEFCFHL---------DCHLPAL-QDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSSS-----CCEECTTSSCEECT---------TSSSTTC-CCCCSSSCCCCSCCCC
T ss_pred CcCcCcCCCC-----CEEECCCCCCceec---------ccCCCCC-CCCcCCCcCCccccCC
Confidence 4699999765 47789999866522 2321111 1113356789999764
No 64
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.24 E-value=51 Score=23.56 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=29.4
Q ss_pred CCcCcccCCCCceeeeccccccccccceeeeeecCCCcccccCCccccccccCcccccccccc
Q psy16683 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64 (139)
Q Consensus 2 ~~~C~vC~~~a~g~hyGv~sC~~C~~FFrR~~~~~~~~~~C~~~~~C~i~~~~~~~Ck~CRl~ 64 (139)
...|.||++.+ ..+.|.+|-..|-- .|-.... .....+.+.|..|+..
T Consensus 2 ~~~C~~C~~~g-----~ll~Cd~C~~~~H~---------~Cl~p~l-~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPG-----DLVMCNQCEFCFHL---------DCHLPAL-QDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCS-----SCCCCTTTCCBCCS---------TTSTTCC-SSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCC-----ceeECCCCCchhcc---------ccCCCCc-ccCCCCCCCCcCccCC
Confidence 35699999765 37889999866522 2422111 0112356789998765
No 65
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=20.03 E-value=48 Score=20.39 Aligned_cols=24 Identities=33% Similarity=0.807 Sum_probs=16.3
Q ss_pred cCcccCCCCce-eeecccccccccc
Q psy16683 4 TCKVCGEPAAG-FHFGAFTCEGCKS 27 (139)
Q Consensus 4 ~C~vC~~~a~g-~hyGv~sC~~C~~ 27 (139)
.|..||..+-. .-.|++.|+.|..
T Consensus 28 ~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 28 DCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp CCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred cCCCCCCceeEecCCCeEECCCCCC
Confidence 58888866532 4567788888863
Done!