RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16683
(139 letters)
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 85.0 bits (210), Expect = 2e-23
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSC 61
C +CG+ ++G H+G ++CEGCK FF R+ + + C++N +C+I+K+ R C+ C
Sbjct: 5 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT-CRDNKDCLIDKRQRNRCQYC 63
Query: 62 RLRKCLMVGMSKSGSRYGRR 81
R +KCL +GM + + R+
Sbjct: 64 RYQKCLAMGMKREAVQEERQ 83
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 83.5 bits (206), Expect = 6e-23
Identities = 38/76 (50%), Positives = 46/76 (60%)
Query: 5 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64
CKVCG+ A+GFH+G CEGCK FF RS C N C I + NR C+ CR +
Sbjct: 3 CKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFK 62
Query: 65 KCLMVGMSKSGSRYGR 80
KCL VGMS+ R+GR
Sbjct: 63 KCLSVGMSRDAVRFGR 78
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 79.7 bits (196), Expect = 3e-21
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSC 61
+ C VCG+ A+G+H+G +CE CK+FF R+ S N C I K+ R SC++C
Sbjct: 4 KRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNE-CEITKRRRKSCQAC 62
Query: 62 RLRKCLMVGMSKSGSRYGR 80
R K L VGM K G R R
Sbjct: 63 RFMKALKVGMLKEGVRLDR 81
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 76.6 bits (188), Expect = 4e-20
Identities = 35/78 (44%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCR 62
+ C VCG+ A GFHF A TCEGCK FF RS ++ C N +C I K NR C++CR
Sbjct: 1 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKR-KALFTCPFNGDCRITKDNRRHCQACR 59
Query: 63 LRKCLMVGMSKSGSRYGR 80
L++C+ +GM K
Sbjct: 60 LKRCVDIGMMKEFILTDE 77
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 75.9 bits (186), Expect = 5e-20
Identities = 31/72 (43%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSC 61
+TC +CG+ A+G H+GA TC CK FF R+ N+ C I+K R +C SC
Sbjct: 2 QKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRND-CTIDKFRRKNCPSC 60
Query: 62 RLRKCLMVGMSK 73
RLRKC GM+
Sbjct: 61 RLRKCYEAGMTL 72
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 75.4 bits (185), Expect = 1e-19
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCR 62
+ C VCG+ A+G+H+ A TCEGCK FF RS ++ CK C ++ R C+ CR
Sbjct: 1 ELCLVCGDRASGYHYNALTCEGCKGFFRRSVTK-SAVYCCKFGRACEMDMYMRRKCQECR 59
Query: 63 LRKCLMVGMSKSGSRYGRRSN 83
L+KCL VGM +
Sbjct: 60 LKKCLAVGMRPECVVPENQCA 80
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 74.0 bits (181), Expect = 3e-19
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSC 61
+ C VC + A+G+H+G ++CEGCK+FF RS N C I+K R SC++C
Sbjct: 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQ-CTIDKNRRKSCQAC 62
Query: 62 RLRKCLMVGMSK 73
RLRKC VGM K
Sbjct: 63 RLRKCYEVGMMK 74
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 74.3 bits (182), Expect = 3e-19
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 5 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64
C VCG+ A+ H+G TCEGCK FF R+ N + ++K+ R C+ CR +
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCP-VDKRRRNRCQFCRFQ 61
Query: 65 KCLMVGMSKSGSRYGRRSN 83
KCL VGM K R
Sbjct: 62 KCLAVGMVKEVVRTDSLKG 80
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 72.8 bits (178), Expect = 8e-19
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 5 CKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCRLR 64
C VC + ++G+H+G CEGCK FF RS + C + CIINK R C+ CRL+
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQK-NMVYTCHRDKNCIINKVTRNRCQYCRLQ 60
Query: 65 KCLMVGMSKSGSRY 78
KC VGMSK R
Sbjct: 61 KCFEVGMSKESVRN 74
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 72.5 bits (177), Expect = 3e-18
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 2 NQTCKVCGEPAAGFHFGAFTCEGCKSFFGRSY-NNLPSISECKNNNECIINKKNRTSCKS 60
++ C VCG+ A G+H+ TCEGCK FF R+ NL CK +C+I+K R C+
Sbjct: 1 DELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQE 60
Query: 61 CRLRKCLMVGMSKSGSRYGRRSNWFKIHCLLQEQQQQAEQQTE 103
CR +KC+ VGM+ + + ++++ E+ +
Sbjct: 61 CRFKKCIYVGMATDLVLDDSKRLAKRKLIEENREKRRREELEK 103
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 70.1 bits (171), Expect = 1e-17
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 3 QTCKVCGEPAAGFHFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTSCKSCR 62
+ C VC + A+G H+G TCEGCK+FF R+ + CII+K R +C +CR
Sbjct: 1 RPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGK-CIIDKIRRKNCPACR 59
Query: 63 LRKCLMVGMSK 73
RKCL GM+
Sbjct: 60 YRKCLQAGMNL 70
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens)
[TaxId: 9606]}
Length = 117
Score = 28.8 bits (64), Expect = 0.12
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 52 KKNRTSCKSCR-------LRKCLMVGMSKSGSRYGRRSNWFKIHCLLQEQQQQ 97
K+ CK C+ R +V + G W+ I C+ ++ ++
Sbjct: 12 KRGTAGCKKCKEKIVKGVCRIGKVV-PNPFSESGGDMKEWYHIKCMFEKLERA 63
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 239
Score = 26.4 bits (57), Expect = 1.3
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 3/20 (15%)
Query: 71 MSKS-GSRY--GRRSNWFKI 87
+ K Y G++S W+K+
Sbjct: 219 IVKDPMCIYKRGKKSGWWKM 238
>d1hc7a3 d.68.5.1 (A:404-477) C-terminal domain of ProRS {Thermus
thermophilus [TaxId: 274]}
Length = 74
Score = 23.9 bits (52), Expect = 3.5
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 9/30 (30%)
Query: 4 TCKVCGEPAAGFHFGAFTCEGCKSFFGRSY 33
C CG P+A G + F ++Y
Sbjct: 54 FCVRCGRPSA---------YGKRVVFAKAY 74
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 304
Score = 24.4 bits (52), Expect = 6.4
Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 16 HFGAFTCEGCKSFFGRSYNNLPSISECKNNNECIINKKNRTS-CKSCRLRKC 66
G G + GR ++L + + K I +C
Sbjct: 191 FLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIY 242
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD
{Haemophilus influenzae [TaxId: 727]}
Length = 252
Score = 24.1 bits (52), Expect = 7.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 99 EQQTERTKLGHPDLLLKLD 117
+Q +RT L P+LL L
Sbjct: 212 KQSLQRTWLRRPELLEGLA 230
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.419
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 506,294
Number of extensions: 22908
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 35
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)