BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16684
         (429 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
 pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
 pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
 pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
          Length = 380

 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 31/242 (12%)

Query: 100 ELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENK 159
           +L+NA P T E     + F ++   +  N+WI K S G++G GIL+    +E  ++ +N+
Sbjct: 121 DLANA-PRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQ 179

Query: 160 DWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEG--RKFDMRMYVLVTSFSPLTVWI 217
                               +V+V QKY+ +P LLE   RKFD+R +VLV +     +++
Sbjct: 180 G-------------------QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYL 218

Query: 218 ARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGEN----LSQGRKWDIQNLRLFLTAMH 273
            R+G  R +   Y   NF D   HLTN  IQ           +G +   +    +L    
Sbjct: 219 YREGVLRTSSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSL 278

Query: 274 GREIVDELFQKIAKVVITALKSVECIMMGNK---HCFELFGFDILLQDNLNVCLLEANAA 330
              + + +  +I +++   L  +E  +       H F+LFGFD ++  NL V L+E N A
Sbjct: 279 NINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGA 338

Query: 331 PS 332
           P+
Sbjct: 339 PA 340


>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
 pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
           Complex
 pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
 pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
 pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
          Length = 384

 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 32/215 (14%)

Query: 128 NMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKY 187
           N+WI K S G++G GIL+  + SE  ++ + +                    +V+V QKY
Sbjct: 145 NVWIAKSSAGAKGEGILISSEASELLDFIDEQG-------------------QVHVIQKY 185

Query: 188 ITNPYLLE--GRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNT 245
           +  P LLE   RKFD+R +VLV       +++ R+G  R +   Y   NF D   HLTN 
Sbjct: 186 LEKPLLLEPGHRKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPYNSANFQDKTCHLTNH 243

Query: 246 AIQLSGEN----LSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMM 301
            IQ           +G +   +    +L       + + +  +I  ++ + L  +E   +
Sbjct: 244 CIQKEYSKNYGRYEEGNEMFFEEFNQYLMDALNTTLENSILLQIKHIIRSCLMCIEP-AI 302

Query: 302 GNKH----CFELFGFDILLQDNLNVCLLEANAAPS 332
             KH     F+LFGFD ++ + L V L+E N AP+
Sbjct: 303 STKHLHYQSFQLFGFDFMVDEELKVWLIEVNGAPA 337


>pdb|3HR0|A Chain A, Crystal Structure Of Homo Sapiens Conserved Oligomeric
           Golgi Subunit 4
 pdb|3HR0|B Chain B, Crystal Structure Of Homo Sapiens Conserved Oligomeric
           Golgi Subunit 4
          Length = 263

 Score = 30.8 bits (68), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 194 LEGRKFDMRMYVLVTSFSPLTVWIARDGFARIA 226
           L G +FD  +  L+   + +T W  RD FAR++
Sbjct: 177 LGGLQFDKELRSLIAYLTTVTTWTIRDKFARLS 209


>pdb|3CTP|A Chain A, Crystal Structure Of Periplasmic Binding ProteinLACI
           TRANSCRIPTIONAL Regulator From Alkaliphilus
           Metalliredigens Qymf Complexed With D- Xylulofuranose
 pdb|3CTP|B Chain B, Crystal Structure Of Periplasmic Binding ProteinLACI
           TRANSCRIPTIONAL Regulator From Alkaliphilus
           Metalliredigens Qymf Complexed With D- Xylulofuranose
          Length = 330

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 314 ILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTG--KEIRVGGF 371
           I  Q +  V +LE +   SMK   ++D    +N I  A  +  L+K+     +E+++ GF
Sbjct: 208 IEFQHDFQVKMLEEDIN-SMKDIVNYDGIFVFNDIAAATVMRALKKRGVSIPQEVQIIGF 266

Query: 372 DKIWCGGPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI 429
           D  + G  +Y     +N P          + +  +N     +E+    + ++++ET I
Sbjct: 267 DNSFIGELLYPSLTTINQPIEALAYTIIELLIKIINGEGVLIEDYIMEVKLIERETTI 324


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,175,919
Number of Sequences: 62578
Number of extensions: 559577
Number of successful extensions: 1175
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1164
Number of HSP's gapped (non-prelim): 10
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)