Query psy16684
Match_columns 429
No_of_seqs 287 out of 1541
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:20:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 1.2E-64 2.6E-69 498.8 14.2 271 58-358 4-287 (292)
2 KOG2156|consensus 100.0 1.8E-63 4E-68 496.6 19.9 302 18-357 207-526 (662)
3 KOG2157|consensus 100.0 1.1E-60 2.4E-65 490.2 24.2 343 3-359 72-429 (497)
4 KOG2158|consensus 100.0 5.1E-44 1.1E-48 353.4 7.6 255 61-355 172-448 (565)
5 KOG2155|consensus 100.0 4.8E-35 1E-39 287.8 13.9 300 5-355 304-618 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 100.0 2.5E-27 5.4E-32 229.9 23.1 215 73-352 16-255 (262)
7 PF08443 RimK: RimK-like ATP-g 99.4 1.5E-12 3.4E-17 120.5 10.3 155 105-336 18-174 (190)
8 COG0189 RimK Glutathione synth 99.2 9.6E-11 2.1E-15 116.8 13.2 159 103-335 132-293 (318)
9 PRK10446 ribosomal protein S6 99.2 1E-10 2.3E-15 115.8 12.7 154 105-335 114-269 (300)
10 TIGR00768 rimK_fam alpha-L-glu 99.2 1.7E-10 3.6E-15 112.0 13.9 157 105-336 103-261 (277)
11 PRK05246 glutathione synthetas 99.2 2.1E-10 4.5E-15 114.5 12.9 90 103-228 133-229 (316)
12 TIGR02291 rimK_rel_E_lig alpha 99.2 3.7E-10 8.1E-15 112.0 13.0 46 280-334 228-273 (317)
13 PF07478 Dala_Dala_lig_C: D-al 99.1 1.1E-09 2.3E-14 102.7 14.9 150 127-341 33-185 (203)
14 PRK01966 ddl D-alanyl-alanine 99.1 3.1E-09 6.7E-14 106.9 17.1 146 127-339 162-309 (333)
15 PRK01372 ddl D-alanine--D-alan 99.1 5.8E-09 1.3E-13 103.2 18.3 163 105-338 113-277 (304)
16 TIGR02144 LysX_arch Lysine bio 99.1 3.5E-09 7.5E-14 103.4 16.1 173 105-353 102-277 (280)
17 PRK14568 vanB D-alanine--D-lac 99.1 2.8E-09 6.1E-14 107.7 15.6 154 127-339 165-318 (343)
18 PF13535 ATP-grasp_4: ATP-gras 99.0 4.3E-09 9.3E-14 95.5 14.1 177 73-332 2-180 (184)
19 PRK14571 D-alanyl-alanine synt 99.0 9.8E-09 2.1E-13 101.6 16.9 150 127-340 125-274 (299)
20 PRK14569 D-alanyl-alanine synt 99.0 1.1E-08 2.4E-13 101.2 15.5 144 127-339 130-273 (296)
21 TIGR01205 D_ala_D_alaTIGR D-al 99.0 3.6E-08 7.7E-13 98.0 19.1 146 127-338 146-292 (315)
22 PLN02941 inositol-tetrakisphos 99.0 2.2E-08 4.8E-13 100.0 17.4 208 61-338 93-311 (328)
23 PRK14570 D-alanyl-alanine synt 98.9 3.5E-08 7.7E-13 100.4 16.7 169 127-355 171-346 (364)
24 TIGR01380 glut_syn glutathione 98.9 1.8E-08 4E-13 100.4 12.8 77 103-207 132-214 (312)
25 PRK14572 D-alanyl-alanine synt 98.9 6.6E-08 1.4E-12 97.9 15.9 154 127-341 171-325 (347)
26 TIGR03103 trio_acet_GNAT GNAT- 98.8 2.5E-08 5.5E-13 106.6 12.9 184 105-337 312-528 (547)
27 PF02955 GSH-S_ATP: Prokaryoti 98.8 7.8E-08 1.7E-12 87.6 12.1 93 101-229 8-106 (173)
28 PRK12458 glutathione synthetas 98.7 1E-07 2.2E-12 96.2 13.1 80 104-208 140-223 (338)
29 TIGR01161 purK phosphoribosyla 98.6 2.2E-06 4.8E-11 86.8 17.7 153 105-335 113-269 (352)
30 PLN02257 phosphoribosylamine-- 98.6 1.1E-06 2.3E-11 91.6 15.7 186 112-356 126-315 (434)
31 PF14397 ATPgrasp_ST: Sugar-tr 98.6 1.2E-06 2.6E-11 86.3 13.9 176 113-336 62-265 (285)
32 PF02655 ATP-grasp_3: ATP-gras 98.5 2.2E-07 4.7E-12 83.8 7.7 27 305-332 133-159 (161)
33 PRK12767 carbamoyl phosphate s 98.5 9.3E-06 2E-10 81.0 17.7 73 105-205 126-200 (326)
34 COG1181 DdlA D-alanine-D-alani 98.4 1.9E-06 4E-11 86.1 12.1 154 116-340 131-295 (317)
35 PRK07206 hypothetical protein; 98.4 5.6E-06 1.2E-10 85.5 15.5 84 105-204 123-208 (416)
36 PRK06849 hypothetical protein; 98.4 3.7E-06 8E-11 86.3 13.4 71 105-203 131-203 (389)
37 PRK14016 cyanophycin synthetas 98.4 1.7E-06 3.8E-11 95.6 11.6 74 105-206 229-305 (727)
38 PRK14573 bifunctional D-alanyl 98.4 1.2E-05 2.7E-10 90.1 18.3 156 127-340 610-765 (809)
39 PRK00885 phosphoribosylamine-- 98.4 2.2E-05 4.7E-10 81.5 18.9 194 105-356 117-313 (420)
40 PRK06019 phosphoribosylaminoim 98.4 8.5E-06 1.8E-10 83.3 15.5 148 105-334 115-270 (372)
41 TIGR01142 purT phosphoribosylg 98.4 1.4E-05 3.1E-10 81.5 16.4 159 105-335 116-276 (380)
42 PRK13790 phosphoribosylamine-- 98.3 8.2E-06 1.8E-10 83.6 13.8 69 113-205 92-160 (379)
43 PRK13278 purP 5-formaminoimida 98.3 1.4E-05 3E-10 81.1 14.9 155 129-331 151-312 (358)
44 PRK13789 phosphoribosylamine-- 98.3 1.5E-05 3.3E-10 82.9 15.5 186 112-355 132-319 (426)
45 TIGR01435 glu_cys_lig_rel glut 98.3 6.6E-06 1.4E-10 90.1 12.6 51 277-336 659-717 (737)
46 TIGR00877 purD phosphoribosyla 98.3 3.2E-05 6.9E-10 80.2 17.0 70 105-189 119-191 (423)
47 TIGR02068 cya_phycin_syn cyano 98.2 7.8E-06 1.7E-10 92.1 12.6 74 105-206 228-304 (864)
48 PRK02186 argininosuccinate lya 98.2 2.6E-05 5.6E-10 88.4 16.5 155 105-333 122-279 (887)
49 PRK13277 5-formaminoimidazole- 98.2 1.4E-05 2.9E-10 80.5 12.0 155 129-329 154-317 (366)
50 PRK06524 biotin carboxylase-li 98.2 4E-05 8.7E-10 80.2 15.3 143 127-334 181-326 (493)
51 PRK08463 acetyl-CoA carboxylas 98.1 9.8E-05 2.1E-09 78.0 17.7 154 113-334 142-296 (478)
52 TIGR00514 accC acetyl-CoA carb 98.1 7.7E-05 1.7E-09 78.1 16.6 154 113-334 142-296 (449)
53 PRK09288 purT phosphoribosylgl 98.1 5E-05 1.1E-09 77.9 14.8 158 105-334 129-288 (395)
54 PLN02948 phosphoribosylaminoim 98.1 9.9E-05 2.1E-09 79.7 16.5 156 105-335 136-294 (577)
55 PRK06111 acetyl-CoA carboxylas 98.1 0.00015 3.3E-09 75.7 17.6 64 113-190 142-205 (450)
56 PRK02471 bifunctional glutamat 98.1 4.3E-05 9.3E-10 84.7 13.8 75 105-206 503-582 (752)
57 PRK06395 phosphoribosylamine-- 98.1 0.00011 2.4E-09 76.7 16.0 73 279-355 245-317 (435)
58 PRK08591 acetyl-CoA carboxylas 98.1 0.00016 3.5E-09 75.6 17.2 64 113-190 142-205 (451)
59 TIGR01369 CPSaseII_lrg carbamo 98.1 7.2E-05 1.6E-09 86.1 15.7 157 105-333 684-843 (1050)
60 PRK08462 biotin carboxylase; V 98.1 0.00013 2.9E-09 76.2 16.5 64 113-190 144-207 (445)
61 PRK05294 carB carbamoyl phosph 98.0 0.00011 2.3E-09 84.9 16.9 157 105-333 684-843 (1066)
62 TIGR01235 pyruv_carbox pyruvat 98.0 0.00015 3.3E-09 83.5 16.9 154 113-334 142-296 (1143)
63 PRK05586 biotin carboxylase; V 98.0 9.6E-05 2.1E-09 77.4 14.2 155 113-334 142-296 (447)
64 COG1821 Predicted ATP-utilizin 98.0 4.8E-05 1E-09 72.2 10.3 44 282-334 216-259 (307)
65 PRK12833 acetyl-CoA carboxylas 98.0 0.00024 5.2E-09 74.9 16.5 154 113-334 145-299 (467)
66 PRK07178 pyruvate carboxylase 97.9 0.00038 8.3E-09 73.4 17.2 154 113-334 141-295 (472)
67 PRK08654 pyruvate carboxylase 97.9 0.00041 8.9E-09 73.7 16.7 64 113-190 142-205 (499)
68 PRK12999 pyruvate carboxylase; 97.9 0.00041 9E-09 80.2 17.7 154 113-334 146-300 (1146)
69 PRK12815 carB carbamoyl phosph 97.8 0.00035 7.5E-09 80.7 16.3 73 105-203 685-759 (1068)
70 PLN02735 carbamoyl-phosphate s 97.8 0.00032 6.9E-09 81.0 14.4 152 113-333 727-878 (1102)
71 PF01071 GARS_A: Phosphoribosy 97.7 0.0023 4.9E-08 59.4 16.8 164 112-332 26-190 (194)
72 PF15632 ATPgrasp_Ter: ATP-gra 97.7 0.0012 2.5E-08 66.3 15.3 85 104-191 121-209 (329)
73 PRK05294 carB carbamoyl phosph 97.6 0.00078 1.7E-08 77.9 15.1 67 105-189 143-211 (1066)
74 PRK05784 phosphoribosylamine-- 97.6 0.0028 6E-08 67.2 17.6 73 280-355 261-334 (486)
75 TIGR01369 CPSaseII_lrg carbamo 97.6 0.0013 2.9E-08 75.9 15.5 68 105-190 142-211 (1050)
76 PLN02735 carbamoyl-phosphate s 97.5 0.0016 3.4E-08 75.4 15.2 160 105-333 159-323 (1102)
77 TIGR02712 urea_carbox urea car 97.5 0.0029 6.3E-08 73.7 16.4 71 106-190 131-203 (1201)
78 COG0439 AccC Biotin carboxylas 97.4 0.0015 3.3E-08 68.1 11.8 54 128-191 153-206 (449)
79 PRK12815 carB carbamoyl phosph 97.3 0.0022 4.8E-08 74.2 13.4 67 105-189 143-211 (1068)
80 PF02222 ATP-grasp: ATP-grasp 97.3 0.028 6E-07 51.4 17.4 139 112-334 17-164 (172)
81 PF02786 CPSase_L_D2: Carbamoy 96.9 0.02 4.4E-07 54.0 13.0 174 112-355 27-203 (211)
82 PF02750 Synapsin_C: Synapsin, 96.9 0.045 9.7E-07 50.5 14.4 189 71-349 7-198 (203)
83 COG0151 PurD Phosphoribosylami 96.7 0.047 1E-06 55.9 15.1 188 110-355 125-313 (428)
84 COG4770 Acetyl/propionyl-CoA c 96.6 0.097 2.1E-06 55.4 16.5 228 127-421 152-408 (645)
85 KOG0369|consensus 96.5 0.0082 1.8E-07 64.0 8.0 66 113-192 174-239 (1176)
86 COG2232 Predicted ATP-dependen 96.5 0.0057 1.2E-07 60.4 6.3 29 308-337 252-280 (389)
87 PF14403 CP_ATPgrasp_2: Circul 96.4 0.0076 1.6E-07 62.7 7.2 103 101-229 306-427 (445)
88 PF05770 Ins134_P3_kin: Inosit 96.3 0.059 1.3E-06 53.6 12.5 210 63-338 81-296 (307)
89 KOG0238|consensus 95.6 0.1 2.2E-06 54.5 10.8 180 126-370 147-328 (670)
90 COG0027 PurT Formate-dependent 95.1 0.38 8.1E-06 47.7 12.3 156 109-334 132-288 (394)
91 COG1038 PycA Pyruvate carboxyl 94.8 0.18 4E-06 55.3 10.2 165 102-334 134-302 (1149)
92 KOG3895|consensus 94.4 0.25 5.5E-06 49.3 9.3 201 63-354 188-392 (488)
93 COG2308 Uncharacterized conser 94.3 0.09 2E-06 54.0 6.3 141 58-229 306-457 (488)
94 COG1759 5-formaminoimidazole-4 94.2 0.6 1.3E-05 46.3 11.4 163 105-329 139-313 (361)
95 KOG2158|consensus 91.0 0.055 1.2E-06 55.7 -0.6 52 305-357 13-64 (565)
96 COG0458 CarB Carbamoylphosphat 88.0 9.8 0.00021 39.2 12.9 49 127-189 150-198 (400)
97 PF04174 CP_ATPgrasp_1: A circ 82.7 1.4 2.9E-05 44.5 3.8 28 305-332 66-93 (330)
98 PHA02117 glutathionylspermidin 82.2 1.8 3.9E-05 44.8 4.6 50 129-197 309-358 (397)
99 TIGR02049 gshA_ferroox glutama 78.5 18 0.0004 36.8 10.1 104 125-247 255-362 (403)
100 PRK10507 bifunctional glutathi 71.4 5.7 0.00012 43.4 4.9 56 129-202 529-584 (619)
101 PF04174 CP_ATPgrasp_1: A circ 66.8 4.8 0.0001 40.6 2.9 83 57-150 227-310 (330)
102 COG3919 Predicted ATP-grasp en 64.6 12 0.00027 37.0 5.1 85 71-189 110-200 (415)
103 PF08886 GshA: Glutamate-cyste 61.8 7.4 0.00016 39.7 3.2 109 125-248 258-366 (404)
104 COG0754 Gsp Glutathionylspermi 59.4 6.4 0.00014 39.8 2.2 46 129-191 298-343 (387)
105 PF14243 DUF4343: Domain of un 52.5 16 0.00034 31.7 3.3 28 308-335 93-120 (130)
106 TIGR01016 sucCoAbeta succinyl- 44.5 77 0.0017 32.5 7.5 44 112-158 28-75 (386)
107 PF07065 D123: D123; InterPro 44.2 45 0.00097 33.2 5.5 46 279-332 194-240 (299)
108 PF08442 ATP-grasp_2: ATP-gras 43.9 84 0.0018 29.4 7.0 52 105-159 18-75 (202)
109 KOG2983|consensus 41.1 69 0.0015 31.3 5.9 22 308-329 229-250 (334)
110 COG2308 Uncharacterized conser 36.6 51 0.0011 34.5 4.6 50 303-352 141-191 (488)
111 PF04556 DpnII: DpnII restrict 35.9 30 0.00065 34.2 2.7 23 310-332 196-218 (286)
112 PF07494 Reg_prop: Two compone 24.8 78 0.0017 18.7 2.2 13 312-324 8-20 (24)
113 COG0045 SucC Succinyl-CoA synt 24.7 1.1E+02 0.0024 31.5 4.6 52 105-159 19-76 (387)
114 PF13020 DUF3883: Domain of un 24.3 58 0.0013 26.0 2.2 23 309-331 28-51 (91)
115 PHA02117 glutathionylspermidin 23.8 68 0.0015 33.3 3.0 26 308-333 106-133 (397)
116 PF14305 ATPgrasp_TupA: TupA-l 22.7 3.4E+02 0.0073 25.9 7.4 29 306-335 194-222 (239)
117 PRK00696 sucC succinyl-CoA syn 22.0 2.6E+02 0.0056 28.6 6.9 51 105-158 19-75 (388)
118 PF13635 DUF4143: Domain of un 21.0 93 0.002 24.6 2.7 19 311-329 71-89 (90)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1.2e-64 Score=498.82 Aligned_cols=271 Identities=39% Similarity=0.704 Sum_probs=151.9
Q ss_pred cCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCC
Q psy16684 58 MKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGG 137 (429)
Q Consensus 58 l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~ 137 (429)
+.++|+||||||+.+||+|+.|+++++++.+.... .++|+|+||.||.++.+|...+.+.+.+.||+||+++
T Consensus 4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~--------~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~ 75 (292)
T PF03133_consen 4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPK--------EFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNG 75 (292)
T ss_dssp -CHHTT-TSS--EEEE-------------------------------------HHHHHHHHHHHHHTTS---EEEEES--
T ss_pred CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCC--------cccCCcceEecHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 45689999999999999999999999998876432 2789999999999999999999988888999999999
Q ss_pred CCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEE
Q psy16684 138 SQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWI 217 (429)
Q Consensus 138 s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~ 217 (429)
++|+||+++++++++.++. .....+||||+||++|+|++|||||||+||||+|++|+++|+
T Consensus 76 ~rG~GI~l~~~~~~i~~~~-------------------~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~ 136 (292)
T PF03133_consen 76 SRGRGIKLFNNLEQILRFS-------------------KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYL 136 (292)
T ss_dssp -----EEEES-HHHHHCCH-------------------CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEE
T ss_pred CCCCCceecCCHHHHHHHh-------------------hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeee
Confidence 9999999999999987531 235678999999999999999999999999999999999999
Q ss_pred EcceEEEEcCcCCC--CCCccCcccccccccccccC---CCc---CCCCccchHHHHHHHHHccccchHHHHHHHHHHHH
Q psy16684 218 ARDGFARIAGIKYC--KDNFADNCMHLTNTAIQLSG---ENL---SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVV 289 (429)
Q Consensus 218 y~~g~~R~a~~~y~--~~~~~~~~~HLTN~siqk~~---~~y---~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii 289 (429)
|++|++|+|+++|+ ..++.+.++||||+++||.. .++ ..+++|++..++.++.. +. ..+.+|++|..++
T Consensus 137 y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~i~~~i 213 (292)
T PF03133_consen 137 YKEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE--GI-DWEKIWEKICDII 213 (292)
T ss_dssp ES--EEEE-SS------------------------------------EEEHHHHHHHCTTTS--SS--STTTCHHHHHHH
T ss_pred ccCceEEeccceeeccccccccccccccccccccccccccccccccccccchhhhhhhhccc--CC-CcccchhhhhHHH
Confidence 99999999999999 78899999999999999983 222 57899999999999875 22 2455666677776
Q ss_pred HHHHHHH-----HhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccCC
Q psy16684 290 ITALKSV-----ECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLE 358 (429)
Q Consensus 290 ~~~l~s~-----~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~~ 358 (429)
.+++.++ ...+....+|||+||+|||||++++|||||||++|+++.+++.+..++.+|++|+|+++.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v~~ 287 (292)
T PF03133_consen 214 IKTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVVDP 287 (292)
T ss_dssp HHHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS--
T ss_pred HHHhhhhhhhhccccccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEeCC
Confidence 6666665 44556678999999999999999999999999999999999999999999999999986543
No 2
>KOG2156|consensus
Probab=100.00 E-value=1.8e-63 Score=496.63 Aligned_cols=302 Identities=35% Similarity=0.617 Sum_probs=270.3
Q ss_pred hHHHHHHhcCCCcEEecCCCCceEEEecccCcchHHHHhhcCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCc
Q psy16684 18 TVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTE 97 (429)
Q Consensus 18 ~li~~~l~~r~gw~e~~~~~~~~d~~W~~~~~~~~~~~~~l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~ 97 (429)
.+|+.+|... ||+.+.. .++|..+|...- +..-+..+++||+||||||++.|+|||.|.+++.+.+..+.+
T Consensus 207 ~vv~~vl~~s-gfkivk~-n~dw~g~Wg~h~--ksp~fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~----- 277 (662)
T KOG2156|consen 207 KVVRQVLANS-GFKIVKV-NDDWMGVWGHHL--KSPSFRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGK----- 277 (662)
T ss_pred HHHHHHHHhc-ccEEecc-cchHHHHhhhhc--CCchhhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhcc-----
Confidence 4577777755 9999998 789999997532 211146788999999999999999999999999998877654
Q ss_pred ccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCccc
Q psy16684 98 EAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIEL 177 (429)
Q Consensus 98 ~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (429)
..++|+|.||+||.|..+|.+...+++...||+||.+.+||.||.++++++++ .
T Consensus 278 --kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIrv~~kw~q~------------------------p 331 (662)
T KOG2156|consen 278 --KEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIRVINKWSQF------------------------P 331 (662)
T ss_pred --cccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceEeccchhhC------------------------C
Confidence 25899999999999999999999988888899999999999999999998774 3
Q ss_pred CccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCC--CCCccCcccccccccccccCCCc-
Q psy16684 178 IPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYC--KDNFADNCMHLTNTAIQLSGENL- 254 (429)
Q Consensus 178 ~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~--~~~~~~~~~HLTN~siqk~~~~y- 254 (429)
...+.|||+||++|+||+|.|||+|+||.|||++||+||+|++|++|||+.+|+ .+++.|.|||+|||+++|..+ |
T Consensus 332 k~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhltnYs~nke~~-ys 410 (662)
T KOG2156|consen 332 KDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLTNYSPNKESN-YS 410 (662)
T ss_pred CcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeEEeccccccccch-hh
Confidence 567899999999999999999999999999999999999999999999999997 467889999999999999877 4
Q ss_pred -------CCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhc--------CCCcceEEEEEEEEecCC
Q psy16684 255 -------SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMM--------GNKHCFELFGFDILLQDN 319 (429)
Q Consensus 255 -------~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~--------~~~~~Fel~G~D~liD~~ 319 (429)
.+|.+|++.+++.++.++ |.+ .++||.+|+++|++++.+-++.+. +.-.|||||||||++|++
T Consensus 411 ~~k~~n~~~g~kwtl~~lw~~l~~q-Gvd-t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDed 488 (662)
T KOG2156|consen 411 LNKYFNACQGSKWTLKSLWLYLDNQ-GVD-TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDED 488 (662)
T ss_pred hhhHHhhcCCchhhHHHHHHHHHhc-CCC-HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCc
Confidence 789999999999999874 654 689999999999999999887542 456899999999999999
Q ss_pred ccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccC
Q psy16684 320 LNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDL 357 (429)
Q Consensus 320 ~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~ 357 (429)
++|||+|||.+||++..++.|-.+|.+||.++|++++.
T Consensus 489 LkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi 526 (662)
T KOG2156|consen 489 LKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGI 526 (662)
T ss_pred cceeeEEEecccccccCCCccchhhhHHHHHHHHhcce
Confidence 99999999999999999999999999999999999874
No 3
>KOG2157|consensus
Probab=100.00 E-value=1.1e-60 Score=490.16 Aligned_cols=343 Identities=30% Similarity=0.507 Sum_probs=295.4
Q ss_pred CCceeEEEecCCCCchHHHHHHhcCCCcEEecCCCCceEEEecccCcchHHHHhhcCCC-ceEeeccCCccccchHHHHH
Q psy16684 3 NSLAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLILESSMKNH-QKIAHYRNFYEISRKNYLAR 81 (429)
Q Consensus 3 ~~~~~~~~~~~~~n~~li~~~l~~r~gw~e~~~~~~~~d~~W~~~~~~~~~~~~~l~~~-q~vNhfp~~~~LtrK~~L~k 81 (429)
++.+|.|.+... +.. +...+..+.||.++.+...+|+|+|.....+... ...+.++ |++||||++.+|+||+.+++
T Consensus 72 ~k~~i~y~~~~~-~~~-~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~-~~~~~p~~~~~~~~p~~~~L~rkd~l~~ 148 (497)
T KOG2157|consen 72 GKHKIKYRTQEK-EPK-LLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFD-FSWLAPYNQVVNHFPRRKELTRKDLLMK 148 (497)
T ss_pred CCCceEEEeccc-chH-HHHHHHhhcceeeecccccceEEEEeccccccHH-HhhhcchhhhhhccccHHHhhhhHHhhh
Confidence 567899999988 245 5555555669999996678999999987654433 4556666 99999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccc----ccCCcccceeecchhHHHHHHHHhc-CCCceEEEcCCCCCCCCCEEEecCchHHHHHh
Q psy16684 82 NLKRYRRQCVKNGNTEEA----ELSNAMPMTFEIPSETALFLQEARR-DSHNMWIVKPSGGSQGRGILLFKKLSEFEEWR 156 (429)
Q Consensus 82 ~lk~~~k~~~~~~~~~~~----~~~~f~P~T~~Lp~e~~~f~~~~~~-~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~ 156 (429)
++++++..++......+. ...+|.|.|+.+|.++.+|+.+|.+ ++.+.||+||++.++|+||++|.+++++..+.
T Consensus 149 ~i~r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~ 228 (497)
T KOG2157|consen 149 LIKRYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIV 228 (497)
T ss_pred hHHHHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhh
Confidence 999999988765333221 2589999999999999999999987 77889999999999999999999999999887
Q ss_pred hccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCC-CCCc
Q psy16684 157 ENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYC-KDNF 235 (429)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~-~~~~ 235 (429)
.... + .......+.|+||+||++|+||+|+|||||.||+|++++|+.+|.|++|++|||+++|+ ++++
T Consensus 229 ~~~~--------~---~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~~~nl 297 (497)
T KOG2157|consen 229 DSFD--------S---FISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGPLVNL 297 (497)
T ss_pred hccc--------c---cccccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcchhhh
Confidence 5321 0 00133567899999999999999999999999999999999999999999999999999 9999
Q ss_pred cCcccccccccccccCCCc-------CCCCccchHHHHHHHHHc-cccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcce
Q psy16684 236 ADNCMHLTNTAIQLSGENL-------SQGRKWDIQNLRLFLTAM-HGREIVDELFQKIAKVVITALKSVECIMMGNKHCF 307 (429)
Q Consensus 236 ~~~~~HLTN~siqk~~~~y-------~~g~~wsl~~l~~~l~~~-~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~F 307 (429)
+|.++||||++|||..++| ..|++|++..|..|+... .+.......+..|...|+.++.+++..+....+||
T Consensus 298 ~n~~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~~~~n~F 377 (497)
T KOG2157|consen 298 QNMSVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTVPSLANCF 377 (497)
T ss_pred cccchhhhccccccCCCCcccccccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhccccccccchh
Confidence 9999999999999999999 389999999999999862 22333456677788888888888888888889999
Q ss_pred EEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccCCc
Q psy16684 308 ELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEK 359 (429)
Q Consensus 308 el~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~~~ 359 (429)
|+||+|||+|++++|||||||++|+|+.++..|..++..++.|++.+|.++.
T Consensus 378 ElyG~DfliD~~lkpwLiEiNssP~~~~t~~~d~~l~~~l~~d~l~~v~~~~ 429 (497)
T KOG2157|consen 378 ELYGFDFLIDEALKPWLIEINASPDLTQTTKNDARLKSKLIDDVLKVVVDPR 429 (497)
T ss_pred hhhCcceeecCCCCeEEEEeecCCcccccchhhhHHHHHHHHHhhccccCcc
Confidence 9999999999999999999999999999999999999999999999987653
No 4
>KOG2158|consensus
Probab=100.00 E-value=5.1e-44 Score=353.40 Aligned_cols=255 Identities=28% Similarity=0.435 Sum_probs=220.7
Q ss_pred CceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCC
Q psy16684 61 HQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQG 140 (429)
Q Consensus 61 ~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G 140 (429)
.|++|||||+.++. |+.|. |.+|.+.+.+ .+.|+|.||.||.++..|.+.+.... .++|+||..|+||
T Consensus 172 fqrvn~fPgm~e~~-kd~Ls--l~~mqkifpe--------ey~fyp~sw~lPa~l~df~a~~~~~K-rtfivkpDsgaqg 239 (565)
T KOG2158|consen 172 FQRENNFPGMREKE-KDILD--LLEMQKIFPE--------EYMFYPTSWRLPAPLCDFPASTEIMK-RTFIVKPDSGAQG 239 (565)
T ss_pred hhhhhcCchHHHHH-HHHHh--HHHHHhcChH--------HhcCCCccccCchHHHHHHHHHHHhc-ccEEECCCCCCCC
Confidence 79999999999999 99998 8888887654 47999999999999999988775432 3999999999999
Q ss_pred CCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcccc-CCceeeeEEEEEEeeecCCeEEEEc
Q psy16684 141 RGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLL-EGRKFDMRMYVLVTSFSPLTVWIAR 219 (429)
Q Consensus 141 ~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi-~GrKFDlRvyvLvts~~Pl~~y~y~ 219 (429)
.||.+++++.++.. .+..+||+||..|||+ |+.|||+|+|++++|++||.||+++
T Consensus 240 ~giylisDir~~g~------------------------~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~ 295 (565)
T KOG2158|consen 240 SGIYLISDIREKGE------------------------YQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVAS 295 (565)
T ss_pred cceeeechhhhhhH------------------------HHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEec
Confidence 99999976655432 3347999999999999 9999999999999999999999999
Q ss_pred ceEEEEcCcCC---CCCCccCcccccccccccccCCCc-------CCCCccchHHHHHHHHHccccchHHHHHHHHHHHH
Q psy16684 220 DGFARIAGIKY---CKDNFADNCMHLTNTAIQLSGENL-------SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVV 289 (429)
Q Consensus 220 ~g~~R~a~~~y---~~~~~~~~~~HLTN~siqk~~~~y-------~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii 289 (429)
+|++|||+++| +..|.++.++|||||+++|.+.+| ..|++..++.....+.. .|.+ +..+|.+|+.++
T Consensus 296 eGlaRFcTeky~ePts~n~~~lymhlTnYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s-~gvd-tk~vwsDik~v~ 373 (565)
T KOG2158|consen 296 EGLARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDS-LGVD-TKFVWSDIKIVF 373 (565)
T ss_pred cchhhhhhccccCCCcccHHHHHHHHHHhhhcCCCccccccCcccccchhHHHHHHHHHHHh-cCch-HHHHHhhhhhhh
Confidence 99999999999 457888999999999999999999 35778888888888876 4654 688999999999
Q ss_pred HHHHHHHHhhhc-----------CCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcc
Q psy16684 290 ITALKSVECIMM-----------GNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVI 355 (429)
Q Consensus 290 ~~~l~s~~~~~~-----------~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv 355 (429)
+++..|..+.+. ....||++.|||++++..+.|.|+|||..|++......|.+. .+|.++++++
T Consensus 374 iktvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~v 448 (565)
T KOG2158|consen 374 IKTVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRV 448 (565)
T ss_pred cchhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhh
Confidence 999999876442 135799999999999999999999999999999988777666 6677777655
No 5
>KOG2155|consensus
Probab=100.00 E-value=4.8e-35 Score=287.83 Aligned_cols=300 Identities=18% Similarity=0.253 Sum_probs=234.9
Q ss_pred ceeEEEecCCCCchHHHHHHhcCCCcEEecCCCCceEEEecccCcchHHH--HhhcCCCceEeeccCCccccchHHHHHH
Q psy16684 5 LAIRFKTEGQTNNTVIEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKLIL--ESSMKNHQKIAHYRNFYEISRKNYLARN 82 (429)
Q Consensus 5 ~~~~~~~~~~~n~~li~~~l~~r~gw~e~~~~~~~~d~~W~~~~~~~~~~--~~~l~~~q~vNhfp~~~~LtrK~~L~k~ 82 (429)
..|+-|++.+ .|.+-|. ++.|+.+++ ..++|++|...+. + .+ .+...|.+.+|+||....||-|+.|+..
T Consensus 304 ~~~kVYtD~~----Qv~e~Lt-~p~f~~t~~-~kdADilw~~~hf-~-Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~ 375 (631)
T KOG2155|consen 304 RKIKVYTDDT----QVTEHLT-NPKFEYTDD-IKDADILWMIKHF-H-DYKKLSEENPCGMINQFPFESCLTVKDLLAAC 375 (631)
T ss_pred ceeEEEcCcH----HHHHhcc-CCceEeccC-ccccceeeehhhH-H-HHHHHhccCCcceeccCchHHHHHHHHHHHHH
Confidence 4577777765 2555555 669999988 6899999986542 2 13 3445789999999999999999999988
Q ss_pred HHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhc----CCCceEEEcCCCCCCCCCEEEecCchHHHHHhhc
Q psy16684 83 LKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARR----DSHNMWIVKPSGGSQGRGILLFKKLSEFEEWREN 158 (429)
Q Consensus 83 lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~----~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~ 158 (429)
.++ ++...+|+|.||.|..++.+|+.+|.. +..|.||+||++.+||-...+..++++|.+.++
T Consensus 376 a~r------------~~g~~~Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~E- 442 (631)
T KOG2155|consen 376 AMR------------DPGKNDWLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIE- 442 (631)
T ss_pred Hhh------------cCCCCcccccccccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHh-
Confidence 876 233467999999999999999999863 567899999999999999999999999998774
Q ss_pred cCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCc
Q psy16684 159 KDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADN 238 (429)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~ 238 (429)
.++-|||+||++|+|..|-|||||..||+.|+.||++|+|.-..+|||..+|+++++.+.
T Consensus 443 --------------------tgPKiv~kYIe~P~LFr~gKFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL~~f~dy 502 (631)
T KOG2155|consen 443 --------------------TGPKIVCKYIERPLLFRNGKFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSLSNFEDY 502 (631)
T ss_pred --------------------cCchHHHHhcCCcceeecCccceEEEEEEccccchhhhheeheeeeecCCccchhhhhhh
Confidence 457799999999999988899999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhh-----cCCCcceEEEEEE
Q psy16684 239 CMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIM-----MGNKHCFELFGFD 313 (429)
Q Consensus 239 ~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~-----~~~~~~Fel~G~D 313 (429)
..|+|-+..-. .-....-.+|..-++..++.-.++.+-..|..++.+.+.++.+.- ...+++-.+||+|
T Consensus 503 EtHFTVmNY~~------kl~q~~ceeFi~~~ek~yp~~pw~dvq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvD 576 (631)
T KOG2155|consen 503 ETHFTVMNYLE------KLLQMKCEEFIGEFEKGYPCFPWEDVQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVD 576 (631)
T ss_pred hhhhhhhhHHH------HHhhccHHHHHHHHhhcCCCCCcchhhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhhe
Confidence 99999665310 111112234444444444444455555666666666666665432 2245788899999
Q ss_pred EEe--cCC--ccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcc
Q psy16684 314 ILL--QDN--LNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVI 355 (429)
Q Consensus 314 ~li--D~~--~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv 355 (429)
+|+ |.+ .+|-|||||.+|++...|..+. ...+++|..+
T Consensus 577 lml~~~~~pVmq~qILEVNFnPDc~RACrYhp----dFfnnVFstL 618 (631)
T KOG2155|consen 577 LMLAGDLTPVMQPQILEVNFNPDCKRACRYHP----DFFNNVFSTL 618 (631)
T ss_pred eeeccCCCccccceeEEEecCcchHHHhhcCh----hHHHhHHHHh
Confidence 999 666 8899999999999999988655 4555555544
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.96 E-value=2.5e-27 Score=229.92 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=168.9
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCch
Q psy16684 73 ISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLS 150 (429)
Q Consensus 73 LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~ 150 (429)
+-+|..+++.|++ ++.+.+|+|+|..+. +++..|++.|+ ..++||..|++|+||..++...
T Consensus 16 ~~~Kw~v~~~L~~------------~~~l~~~LP~T~~~~~~~~l~~~L~~y~-----~vylKP~~Gs~G~gI~ri~~~~ 78 (262)
T PF14398_consen 16 FFDKWEVYKALSR------------DPELRPYLPETELLTSFEDLREMLNKYK-----SVYLKPDNGSKGKGIIRIEKKG 78 (262)
T ss_pred CCCHHHHHHHHHc------------CCcchhhCCCceEcCCHHHHHHHHHHCC-----EEEEEeCCCCCCccEEEEEEeC
Confidence 4689999999976 345679999999984 78999999998 8999999999999999885543
Q ss_pred ----------------------HHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEe
Q psy16684 151 ----------------------EFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVT 208 (429)
Q Consensus 151 ----------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvt 208 (429)
++..++.. ....+.||||++|+. ..++||+||+|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----------------~~~~~~yIiQq~I~l-~~~~gr~fD~RvlvqK~ 140 (262)
T PF14398_consen 79 GGYRIQYRNKKKNVRRTFSSLEELEQFLKE-----------------LLGKRRYIIQQGIPL-ATYDGRPFDFRVLVQKN 140 (262)
T ss_pred CEEEEEEccCCceeEEEeCCHHHHHHHHHH-----------------hcCCCcEEEeCCccc-cccCCCeEEEEEEEEEC
Confidence 33333321 235679999999994 78999999999999998
Q ss_pred eecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHH
Q psy16684 209 SFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKV 288 (429)
Q Consensus 209 s~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~i 288 (429)
. .+.|...+.++|+|... .-+||++. +|..+++.++.... ...+.+..+|.++
T Consensus 141 ~---~G~W~vtg~~~Rva~~~----------~ivTN~~~--------GG~~~~~~~~l~~~------~~~~~~~~~l~~~ 193 (262)
T PF14398_consen 141 G---SGKWQVTGIVARVAKPG----------SIVTNLSQ--------GGTALPFEEVLRQS------EEAEKIREELEDL 193 (262)
T ss_pred C---CCCEEEEEEEEEEcCCC----------CceeccCC--------CceecCHHHHHHhh------hhHHHHHHHHHHH
Confidence 7 67899999999999886 45666664 67767665554433 2256788899999
Q ss_pred HHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh-hHHHHHHHHHHHH
Q psy16684 289 VITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH-DYKLKYNLIQDAL 352 (429)
Q Consensus 289 i~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~-d~~lk~~li~d~l 352 (429)
+..+..+++..+. ..|.++|+||+||.+|++||||||+.|+....... |.++..+++...+
T Consensus 194 a~~ia~~le~~~~---~~~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl 255 (262)
T PF14398_consen 194 ALEIAQALEKHFG---GHLGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPL 255 (262)
T ss_pred HHHHHHHHHHhcC---CceeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHH
Confidence 9999888888764 22777899999999999999999999998876654 4555555555444
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.39 E-value=1.5e-12 Score=120.48 Aligned_cols=155 Identities=26% Similarity=0.410 Sum_probs=76.1
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
+|+|+.. +.+...|++++. +...|+||..|+.|+|+.++++.+++...+... .....++
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~---~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~----------------~~~~~~~ 78 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG---GFPVVIKPLRGSSGRGVFLINSPDELESLLDAF----------------KRLENPI 78 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH-----SSEEEE-SB-------EEEESHCHHHHHHH---------------------TTT-
T ss_pred CCCEEEECCHHHHHHHHHHhc---CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHH----------------HhccCcc
Confidence 6999887 578888998884 336899999999999999999999888776431 1134677
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
++|+||+.+ +| -|+|++|+-..+ . .++.|.+... -..||.+. |....
T Consensus 79 ~~Q~fI~~~---~g--~d~Rv~Vig~~v--v------~a~~r~~~~~----------d~r~n~~~---------g~~~~- 125 (190)
T PF08443_consen 79 LVQEFIPKD---GG--RDLRVYVIGGKV--V------GAYRRSSPEG----------DFRTNLSR---------GGKVE- 125 (190)
T ss_dssp EEEE----S---S-----EEEEEETTEE--E------EEEE-------------------------------------E-
T ss_pred eEeccccCC---CC--cEEEEEEECCEE--E------EEEEEecCcc----------cchhhhcc---------CceEE-
Confidence 999999952 11 599998876541 1 1234443331 11234321 21110
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKAT 336 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~ 336 (429)
.-.+-+++.+++.++..++ ...+.|+|+ ++.++.+|++|||.+|++...
T Consensus 126 ---------------~~~l~~e~~~~a~~~~~~l---------gl~~~giDi-~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 126 ---------------PYDLPEEIKELALKAARAL---------GLDFAGIDI-LDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp ---------------E----HHHHHHHHHHHHHT---------T-SEEEEEE-EEETTEEEEEEEETT---TTH
T ss_pred ---------------EecCCHHHHHHHHHHHHHh---------CCCEEEEEE-EecCCCeEEEEecCCchHhHH
Confidence 0123345666666666555 457899995 566667999999999999865
No 8
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9.6e-11 Score=116.77 Aligned_cols=159 Identities=25% Similarity=0.312 Sum_probs=109.6
Q ss_pred Ccccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCch-HHHHHhhccCCCcccccCCCCCCCcccCc
Q psy16684 103 NAMPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLS-EFEEWRENKDWSPKERKRSDDPNDIELIP 179 (429)
Q Consensus 103 ~f~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
-.+|+|.+.- .+...|+++.. +...|+||..|+.|+||+++++.+ ++.+..+... ....
T Consensus 132 ipvP~T~i~~~~~~~~~~~~~~~---g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~---------------~~~~ 193 (318)
T COG0189 132 IPVPPTLITRDPDEAAEFVAEHL---GFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLT---------------QEGR 193 (318)
T ss_pred CCCCCEEEEcCHHHHHHHHHHhc---CCCEEEeeCCCCCccceEEecCCChhHHHHHHHHh---------------cccc
Confidence 3579999983 47788887764 447899999999999999999998 7777665431 1233
Q ss_pred cceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCc
Q psy16684 180 EVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRK 259 (429)
Q Consensus 180 ~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ 259 (429)
..++||+||+.| +=|.|.+|++... |...| ++.|.++..= --||.+. +|.
T Consensus 194 ~~~ivQeyi~~~------~~~~rrivv~~~~-~~~~y----~~~R~~~~~~----------~R~N~a~--------Gg~- 243 (318)
T COG0189 194 KLIIVQEYIPKA------KRDDRRVLVGGGE-VVAIY----ALARIPASGD----------FRSNLAR--------GGR- 243 (318)
T ss_pred ceEehhhhcCcc------cCCcEEEEEeCCE-EeEEe----eeccccCCCC----------ceeeccc--------ccc-
Confidence 579999999974 2467777777652 34433 6677665431 1244443 111
Q ss_pred cchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 260 WDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 260 wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.....+-+++++++.++..++ ...++|+||+.+ +...+++|||.+|....
T Consensus 244 ----------------~e~~~l~~e~~elA~kaa~~l---------Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 244 ----------------AEPCELTEEEEELAVKAAPAL---------GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred ----------------ccccCCCHHHHHHHHHHHHHh---------CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 111233456777777776666 567899999999 55699999999997765
No 9
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.22 E-value=1e-10 Score=115.78 Aligned_cols=154 Identities=22% Similarity=0.278 Sum_probs=96.7
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
+|+|... +.+...+.+++. +..+|+||..++.|+|++++++.+++..+.+.. ......+
T Consensus 114 ~P~t~~~~~~~~~~~~~~~~~---~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~----------------~~~~~~~ 174 (300)
T PRK10446 114 LPVTGIAHSPDDTSDLIDMVG---GAPLVVKLVEGTQGIGVVLAETRQAAESVIDAF----------------RGLNAHI 174 (300)
T ss_pred CCCEEEeCCHHHHHHHHHHhC---CCCEEEEECCCCCcccEEEEcCHHHHHHHHHHH----------------HhcCCCE
Confidence 6788766 345566665542 336999999999999999999888777665421 1123579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+.+ .-.|+|+.|+-.. +. ..+-|.+... ++ .+|++. ++.. .
T Consensus 175 lvQe~I~~~-----~g~d~rv~vig~~-----~~---~~~~r~~~~~----~~------~~n~~~--------g~~~-~- 221 (300)
T PRK10446 175 LVQEYIKEA-----QGCDIRCLVVGDE-----VV---AAIERRAKEG----DF------RSNLHR--------GGAA-S- 221 (300)
T ss_pred EEEeeeccC-----CCceEEEEEECCE-----EE---EEEEEecCCC----ch------hheecc--------CCee-c-
Confidence 999999731 2479999976421 11 1234433221 11 233321 1110 0
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
. ..+-+++++++.++..++ +|. ..|+||+.|+++ ||++|||+.|+++.
T Consensus 222 -----------~----~~l~~~~~~~a~~a~~al--------g~~-~~gvD~~~~~~g-~~vlEvN~~pg~~~ 269 (300)
T PRK10446 222 -----------V----ASITPQEREIAIKAARTM--------ALD-VAGVDILRANRG-PLVMEVNASPGLEG 269 (300)
T ss_pred -----------c----CCCCHHHHHHHHHHHHHh--------CCC-EEEEEEEEcCCC-cEEEEEECCCChhh
Confidence 0 012234566666665555 243 799999999887 99999999999864
No 10
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.22 E-value=1.7e-10 Score=112.04 Aligned_cols=157 Identities=24% Similarity=0.306 Sum_probs=95.6
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+|+.+. +++..+++++. ..+|+||..|+.|+|++++++.+++......... . .....++
T Consensus 103 ~P~t~~~~~~~~~~~~~~~~~----~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~----------~---~~~~~~~ 165 (277)
T TIGR00768 103 QPRTGLAGSPEEALKLIEEIG----FPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQ----------L---NGPQNLF 165 (277)
T ss_pred CCCEEEeCCHHHHHHHHHhcC----CCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHH----------h---cccCCcE
Confidence 68988874 56666666542 3799999999999999999998888765532100 0 1112579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+.+ ..+|+|++++-.. +. ..+.|.....| .+|.+. +|...
T Consensus 166 lvQe~I~~~-----~~~~~rv~v~~~~--~~------~~~~r~~~~~~-----------~~n~~~--------g~~~~-- 211 (277)
T TIGR00768 166 YVQEYIKKP-----GGRDIRVFVVGDE--VI------AAIYRITSGHW-----------RTNLAR--------GGKAE-- 211 (277)
T ss_pred EEEeeecCC-----CCceEEEEEECCE--EE------EEEEEcCCCch-----------hhhhhc--------CCeee--
Confidence 999999832 1269999875332 11 11223211111 123221 11100
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKAT 336 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~ 336 (429)
.. .+-+++++++.++..++. +..+|+||++|++++||+||||+.|++...
T Consensus 212 -----------~~----~l~~~~~~~a~~~~~~l~---------~~~~~vD~~~~~~g~~~viEiN~~p~~~~~ 261 (277)
T TIGR00768 212 -----------PC----PLTEEIEELAIKAAKALG---------LDVVGIDLLESEDRGLLVNEVNPNPEFKNS 261 (277)
T ss_pred -----------ec----CCCHHHHHHHHHHHHHhC---------CCeEEEEEEEcCCCCeEEEEEcCCcchhhh
Confidence 00 011245555555544441 246799999999999999999999997643
No 11
>PRK05246 glutathione synthetase; Provisional
Probab=99.18 E-value=2.1e-10 Score=114.55 Aligned_cols=90 Identities=29% Similarity=0.296 Sum_probs=63.4
Q ss_pred Ccccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCc----hHHHHHhhccCCCcccccCCCCCCCcc
Q psy16684 103 NAMPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKL----SEFEEWRENKDWSPKERKRSDDPNDIE 176 (429)
Q Consensus 103 ~f~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (429)
.++|+|... +.++..|+++++ ..|+||..|++|+||+++++. ..+.+++. .
T Consensus 133 ~~vP~T~~~~~~~~~~~~~~~~~-----~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~------------------~ 189 (316)
T PRK05246 133 ELMPPTLVTRDKAEIRAFRAEHG-----DIILKPLDGMGGAGIFRVKADDPNLGSILETLT------------------E 189 (316)
T ss_pred ccCCCEEEeCCHHHHHHHHHHCC-----CEEEEECCCCCccceEEEeCCCccHHHHHHHHH------------------H
Confidence 479999887 457788888875 689999999999999999543 22333332 1
Q ss_pred cCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcc-eEEEEcCc
Q psy16684 177 LIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARD-GFARIAGI 228 (429)
Q Consensus 177 ~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~-g~~R~a~~ 228 (429)
....+|++|+||+.+- + -|+|++|+ .+ + .-+ ++.|.+..
T Consensus 190 ~~~~~~lvQ~~I~~~~--~---~D~Rv~vv-~g----~---vv~~a~~R~~~~ 229 (316)
T PRK05246 190 HGREPVMAQRYLPEIK--E---GDKRILLV-DG----E---PVGYALARIPAG 229 (316)
T ss_pred ccCCeEEEEeccccCC--C---CCEEEEEE-CC----E---EhhheeEecCCC
Confidence 2346899999998532 2 39999987 32 1 234 67787655
No 12
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.15 E-value=3.7e-10 Score=111.95 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 280 ELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 280 ~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
..|+++.+++.++..++ +| ..+|+||++|.++.||+||||+.|+++
T Consensus 228 p~~~el~~la~~A~~~~--------g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWELT--------GL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHhc--------CC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 45677777777766543 25 789999999988899999999999998
No 13
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.14 E-value=1.1e-09 Score=102.68 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=92.1
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++...||..+++.+++...++.. .......+|++||+ |+-|-+- |+
T Consensus 33 ~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~----------------~~~~~~vlVEefI~------G~E~tv~--vl 88 (203)
T PF07478_consen 33 GFPLFVKPASEGSSIGISKVHNEEELEEAIEKA----------------FKYDDDVLVEEFIS------GREFTVG--VL 88 (203)
T ss_dssp SSSEEEEESSTSTTTTEEEESSHHHHHHHHHHH----------------TTTHSEEEEEE--S------SEEEEEE--EE
T ss_pred CCCEEEEECCCCccEEEEEcCCHHHHHHHHHHH----------------hhhcceEEEEeeec------ccceEEE--EE
Confidence 347999999999999999999999998887643 12356899999996 6655444 33
Q ss_pred Eeee---cCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHH
Q psy16684 207 VTSF---SPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQ 283 (429)
Q Consensus 207 vts~---~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~ 283 (429)
-..- -|.....+.+++..+..+ |.. ++ ...... ......+.+.+
T Consensus 89 ~~~~~~~~~~~ei~~~~~~~d~~~K-y~~----------~~-----------~~~~~~-----------~pa~l~~~~~~ 135 (203)
T PF07478_consen 89 GNGEPRVLPPVEIVFPSEFYDYEAK-YQP----------AD-----------SETEYI-----------IPADLSEELQE 135 (203)
T ss_dssp ESSSTEEEEEEEEEESSSEEEHHHH-HSG----------CC-----------SCEEEE-----------SS-SS-HHHHH
T ss_pred ecCCcccCceEEEEcCCCceehhhe-ecc----------CC-----------CceEEE-----------ecCCCCHHHHH
Confidence 3220 122222233322222111 100 00 000000 11223456677
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhH
Q psy16684 284 KIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDY 341 (429)
Q Consensus 284 ~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~ 341 (429)
+|++++.++..++ +|-..-.+||.+|++++||+||||+.|+|+..+....
T Consensus 136 ~i~~~a~~a~~~l--------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~ 185 (203)
T PF07478_consen 136 KIKEIAKKAFKAL--------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFPR 185 (203)
T ss_dssp HHHHHHHHHHHHT--------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCceeEEEEeccCCceEEEeccCcccccCCCHHHH
Confidence 8888888877765 4667789999999999999999999999998776543
No 14
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.10 E-value=3.1e-09 Score=106.92 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=92.2
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.||+||..++.|.||.++++.+++...++.. ......++||+||+ |+ ++++-|+
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~----------------~~~~~~vlvEefI~------G~--E~~v~vl 217 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLA----------------FEYDRKVLVEQGIK------GR--EIECAVL 217 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHH----------------HhcCCcEEEEcCcC------CE--EEEEEEE
Confidence 457999999999999999999999988777532 11245799999998 54 5666666
Q ss_pred Eee--ecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHH
Q psy16684 207 VTS--FSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQK 284 (429)
Q Consensus 207 vts--~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~ 284 (429)
... .-|.... .....-|+.. . .|..|... + ..+....+.+.++
T Consensus 218 ~~~~~~~~~~ei-------~~~~~~~d~~---~---------------ky~~~~~~-------~---~~Pa~l~~~~~~~ 262 (333)
T PRK01966 218 GNDPKASVPGEI-------VKPDDFYDYE---A---------------KYLDGSAE-------L---IIPADLSEELTEK 262 (333)
T ss_pred CCCCeEcccEEE-------ecCCceEcHH---H---------------ccCCCCce-------E---EeCCCCCHHHHHH
Confidence 531 1122211 1111111100 0 00001000 0 0111223445667
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 285 IAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 285 I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
|++++.+++.++ +|-...++||++|++++|||||||+.|+|+..+-.
T Consensus 263 i~~~a~~~~~aL--------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 263 IRELAIKAFKAL--------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred HHHHHHHHHHHh--------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 777777777765 35678899999999999999999999999987643
No 15
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.09 E-value=5.8e-09 Score=103.18 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=95.8
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+|+.+. ++...+.+.. +-.+|+||..++.|+||.++.+.+++.+..+.. ......+
T Consensus 113 ~p~~~~~~~~~~~~~~~~~~----~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~----------------~~~~~~~ 172 (304)
T PRK01372 113 TPPWIVLTREEDLLAAIDKL----GLPLVVKPAREGSSVGVSKVKEEDELQAALELA----------------FKYDDEV 172 (304)
T ss_pred CCCEEEEeCcchHHHHHhhc----CCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHH----------------HhcCCcE
Confidence 67777774 3334444433 346899999999999999999999988766431 1124579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+ |+ ++++.|+....-|. +++.... . .+..-+++. .|.....
T Consensus 173 lvEe~i~------G~--E~~v~vi~~~~~~~---------~~~~~~~----~---~~~~~~~~~---------~g~~~~~ 219 (304)
T PRK01372 173 LVEKYIK------GR--ELTVAVLGGKALPV---------IEIVPAG----E---FYDYEAKYL---------AGGTQYI 219 (304)
T ss_pred EEEcccC------CE--EEEEEEECCCccce---------EEEEecC----C---EEeeecccc---------CCCeEEE
Confidence 9999997 54 66776553321111 1111110 0 000000000 1110000
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
.+....+.+..+|++++.+++.++ ++-...++||++|++|+||+||||+.|++...+.
T Consensus 220 ----------~p~~~~~~~~~~l~~~a~~~~~~l--------g~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~ 277 (304)
T PRK01372 220 ----------CPAGLPAEIEAELQELALKAYRAL--------GCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSL 277 (304)
T ss_pred ----------eCCCCCHHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEcCCCCEEEEEecCCCCCCcccH
Confidence 010112334456666666666554 1335679999999999999999999999987653
No 16
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.08 E-value=3.5e-09 Score=103.41 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=99.6
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+|+.+. .+...+.+.+ +..+|+||..|+.|+|+.++++.+++.+..+... ... ......+
T Consensus 102 ~P~t~~~~~~~~~~~~~~~~----~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~-----------~~~-~~~~~~~ 165 (280)
T TIGR02144 102 TPRTYLAFDREAALKLAEAL----GYPVVLKPVIGSWGRLVALIRDKDELESLLEHKE-----------VLG-GSQHKLF 165 (280)
T ss_pred CCCeEeeCCHHHHHHHHHHc----CCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHH-----------hhc-CCcCCeE
Confidence 58887763 4455554443 2368999999999999999999888776542100 000 1123579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
++|+||+.| ..|+|++|+-.. . . ..+.|.+ ..|. +|.+. ++. ..
T Consensus 166 ivQefI~~~------~~d~~v~vig~~-----~-~--~~~~r~~-~~~~-----------~~~~~--------g~~-~~- 209 (280)
T TIGR02144 166 YIQEYINKP------GRDIRVFVIGDE-----A-I--AAIYRYS-NHWR-----------TNTAR--------GGK-AE- 209 (280)
T ss_pred EEEcccCCC------CCceEEEEECCE-----E-E--EEEEEcC-Cchh-----------hhhhc--------CCc-ee-
Confidence 999999843 368999886332 1 0 1223333 1110 11110 110 00
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCC-hhhH
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATD-DHDY 341 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~-~~d~ 341 (429)
.. .+-+++.+++.+++.++ ....+|+||+.|+++.|+++|||..|++.... ..-.
T Consensus 210 -----------~~----~~~~~~~~~a~~~~~~l---------g~~~~~vD~~~~~~g~~~v~EvN~~p~~~~~~~~~g~ 265 (280)
T TIGR02144 210 -----------PC----PLDEEVEELAVKAAEAV---------GGGVVAIDIFESKERGLLVNEVNHVPEFKNSVRVTGV 265 (280)
T ss_pred -----------cc----CCCHHHHHHHHHHHHHh---------CCCeEEEEEEEcCCCCEEEEEEeCCcchhhhhHhhCC
Confidence 00 01123455555555444 13478999999999999999999999997532 1223
Q ss_pred HHHHHHHHHHHh
Q psy16684 342 KLKYNLIQDALN 353 (429)
Q Consensus 342 ~lk~~li~d~l~ 353 (429)
.+-..+++.++.
T Consensus 266 ~~~~~~~~~~~~ 277 (280)
T TIGR02144 266 NVAGEILEYAVS 277 (280)
T ss_pred CHHHHHHHHHHH
Confidence 344445555444
No 17
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.07 E-value=2.8e-09 Score=107.65 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=90.0
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.||+||..++.++||.++++.+++...++.. ......+|||+||+ |+.+. +-|+
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a----------------~~~~~~vlVEe~I~------G~E~s--v~vl 220 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESA----------------RQYDSKVLIEEAVV------GSEVG--CAVL 220 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHH----------------HhcCCcEEEECCcC------CEEEE--EEEE
Confidence 347999999999999999999999988776532 11235789999997 66544 3333
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
.... .+.+. .-+.++....-|+... .+. + ..+...+ .+ ..+....+.+.++|+
T Consensus 221 ~~~~-~~~~~--~~~~i~~~~~~~~~~~---k~~-----------~--~~g~~~~-----~~---~~Pa~l~~~~~~~i~ 273 (343)
T PRK14568 221 GNGA-DLVVG--EVDQIRLSHGFFRIHQ---ENE-----------P--EKGSENS-----TI---IVPADISAEERSRVQ 273 (343)
T ss_pred cCCC-Cccee--cceEEecCCCccchhh---hhc-----------c--ccCCCCe-----eE---EeCCCCCHHHHHHHH
Confidence 3210 01110 0011111111111000 000 0 0000000 00 011122344556777
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
+++.+++.++ +|....++||++|+++++||+|||+.|+++..+..
T Consensus 274 ~~a~~~~~~L--------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 274 ETAKAIYRAL--------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred HHHHHHHHHh--------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHH
Confidence 7777777665 36789999999999999999999999999987643
No 18
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.04 E-value=4.3e-09 Score=95.52 Aligned_cols=177 Identities=18% Similarity=0.215 Sum_probs=95.3
Q ss_pred ccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCch
Q psy16684 73 ISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLS 150 (429)
Q Consensus 73 LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~ 150 (429)
+.+|..+.+.+++.. .. +|+++.+. .++..+..... ..||+||..++.|+|++++++.+
T Consensus 2 ~~dK~~~~~~~~~~g--------------v~-~P~~~~~~~~~~~~~~~~~~~----~p~vvKp~~g~gs~gv~~~~~~~ 62 (184)
T PF13535_consen 2 CNDKYRMRELLKKAG--------------VP-VPKTRIVDSEEELRAFAEDLG----FPFVVKPVDGSGSRGVFIVHSPE 62 (184)
T ss_dssp TCCHHHHHHHHHHHT--------------S-----EEEECSHHHHHHHHHHSS----SSEEEEESS-STTTT-EEESSHH
T ss_pred CCCHHHHHHHHHHcC--------------cC-CCCEEEECCHHHHHHHHHHcC----CCEEEEcCccccCCCEEEeCCHH
Confidence 456777766665421 12 78888774 55666666543 47999999999999999999999
Q ss_pred HHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCC
Q psy16684 151 EFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKY 230 (429)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y 230 (429)
++.++++.... ........+|||+||+ |.-+.+++++. .+ .+..+.++ -........+
T Consensus 63 ~l~~~~~~~~~------------~~~~~~~~~ivqe~i~------g~e~~~~~~~~-~G-~~~~~~~~--~~~~~~~~~~ 120 (184)
T PF13535_consen 63 ELEAALAEIRE------------DSPLGNGPVIVQEYIP------GDEYSVDGVVD-DG-EVVFAGIS--RYVRQSPGHF 120 (184)
T ss_dssp HHHHHHHHHHH------------HHS-HSSSEEEEE---------SEEEEEEEEEE-TT-EEEEEEEE--EEEEEETCCC
T ss_pred HHHHHHHHHHH------------hcccCCccEEEEEeee------eeeEEEEEEEE-cc-eEEEEEEE--EEeccccccc
Confidence 99888653200 0001245799999998 67777777665 22 11111100 0111101100
Q ss_pred CCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEE
Q psy16684 231 CKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELF 310 (429)
Q Consensus 231 ~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~ 310 (429)
... ..++ ..+. ....+.+++.+.+.+.+.++-- ....+
T Consensus 121 -----~~~-~~~~--------------~~~~---------------~~~~~~~~~~~~~~~~~~~~g~-------~~G~~ 158 (184)
T PF13535_consen 121 -----SGG-VPTG--------------YSVP---------------SEPPLPEELRDLARKLLRALGY-------RNGFF 158 (184)
T ss_dssp -----SSS-EEEE--------------EEES-----------------CEHHHHHHHHHHHHHHHHT---------SEEE
T ss_pred -----ccc-eeee--------------eecc---------------cccccHHHHHHHHHHHHHHcCC-------ceEEE
Confidence 000 0000 0000 0001124566666666555411 16889
Q ss_pred EEEEEecCCccEEEEEeecCCC
Q psy16684 311 GFDILLQDNLNVCLLEANAAPS 332 (429)
Q Consensus 311 G~D~liD~~~kpWLLEVN~~Ps 332 (429)
++||++|++|++++||||..|+
T Consensus 159 ~id~~~~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 159 HIDFIVDPDGELYFIEINPRFG 180 (184)
T ss_dssp EEEEEEETCCEEEEEEEESS--
T ss_pred EEEEEEeCCCCEEEEEECccCC
Confidence 9999999999999999999876
No 19
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.02 E-value=9.8e-09 Score=101.60 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=90.1
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.||+||..++.|+||.++++.+++.+..+.. ......++||+||+ |+ ++++-|+
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~----------------~~~~~~vlVEeyI~------G~--E~sv~vl 180 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKED----------------LPRYGSVIVQEYIP------GR--EMTVSIL 180 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHH----------------HhhCCcEEEEcccc------ce--EEEEEEE
Confidence 458999999999999999999999988776431 01234699999997 54 7777777
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
...-.+ .+ +- ........ .+ +.+-++ |..|... +. .+....+.+..+|+
T Consensus 181 ~~~~~~-~v--l~--~~e~~~~~----~~---~~~~~k---------~~~g~~~-------~~---~p~~l~~~~~~~i~ 229 (299)
T PRK14571 181 ETEKGF-EV--LP--ILELRPKR----RF---YDYVAK---------YTKGETE-------FI---LPAPLNPEEERLVK 229 (299)
T ss_pred cCCCCe-ee--ec--eEEEecCC----Cc---cccccc---------cCCCCee-------EE---eCCCCCHHHHHHHH
Confidence 654111 11 10 11110000 00 000000 0001000 00 01112244556677
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhh
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHD 340 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d 340 (429)
+++.+++.++ +|....++||++| +++||+||||+.|+++..+...
T Consensus 230 ~~a~~~~~~l--------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~ 274 (299)
T PRK14571 230 ETALKAFVEA--------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLP 274 (299)
T ss_pred HHHHHHHHHh--------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHH
Confidence 7777766654 3567889999997 5799999999999999876543
No 20
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.98 E-value=1.1e-08 Score=101.23 Aligned_cols=144 Identities=15% Similarity=0.192 Sum_probs=88.3
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|.||.++++.+++...++.. .....++||+||+ |+ ++++-|+
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~-----------------~~~~~~lvEefI~------G~--E~tv~vl 184 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEA-----------------SKYGEVMIEQWVT------GK--EITVAIV 184 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHH-----------------HhcCCEEEEcccc------cE--EEEEEEE
Confidence 347999999999999999999999998777531 1124689999996 65 5555554
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
-.. .+... .++....-|+-. . .| .++..+. .+....+.+..+|+
T Consensus 185 ~~~--~~~~~-----~i~~~~~~~~~~---~--k~-------------~~~~~~~-----------~P~~l~~~~~~~i~ 228 (296)
T PRK14569 185 NDE--VYSSV-----WIEPQNEFYDYE---S--KY-------------SGKSIYH-----------SPSGLCEQKELEVR 228 (296)
T ss_pred CCc--CcceE-----EEecCCCcCChh---h--cc-------------CCCcEEE-----------eCCCCCHHHHHHHH
Confidence 321 11110 011111111000 0 00 0000000 01111233445677
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
+++.+++.++ +|-...++||++|++++||+||||+.|+|+.++..
T Consensus 229 ~~a~~~~~~L--------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 229 QLAKKAYDLL--------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred HHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHH
Confidence 7776666665 36688999999999999999999999999987653
No 21
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.98 E-value=3.6e-08 Score=97.99 Aligned_cols=146 Identities=21% Similarity=0.246 Sum_probs=88.6
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|+||.++++.+++....+.. ......++||+||+ |+ ++++.++
T Consensus 146 ~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~----------------~~~~~~~lvEe~i~------G~--e~~v~vi 201 (315)
T TIGR01205 146 GFPVIVKPAREGSSVGVSKVKSEEELQAALDEA----------------FEYDEEVLVEQFIK------GR--ELEVSIL 201 (315)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHH----------------HhcCCcEEEEcCCC------CE--EEEEEEE
Confidence 457999999999999999999999988776432 11235799999995 54 7777776
Q ss_pred Eeee-cCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHH
Q psy16684 207 VTSF-SPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKI 285 (429)
Q Consensus 207 vts~-~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I 285 (429)
.... -|... ...+.-..-+... ++. ..+.... .+....+.+.++|
T Consensus 202 ~~~~~~~~~~---------~~~~~~~~~~~~~------~~~--------~~~~~~~-----------~p~~l~~~~~~~i 247 (315)
T TIGR01205 202 GNEEALPIIE---------IVPEIEGFYDYEA------KYL--------DGSTEYV-----------IPAPLDEELEEKI 247 (315)
T ss_pred CCCCccceEE---------ecCCCCCeeCccc------ccC--------CCCeeEE-----------eCCCCCHHHHHHH
Confidence 5321 01110 0000000000000 000 0000000 0111123445567
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
++++.+++.++. +-..+++||++|.+++||+||||+.|+++..+.
T Consensus 248 ~~~a~~~~~~lg--------~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~ 292 (315)
T TIGR01205 248 KELALKAYKALG--------CRGLARVDFFLDEEGEIYLNEINTIPGMTAISL 292 (315)
T ss_pred HHHHHHHHHHhC--------CCceEEEEEEEeCCCCEEEEEeeCCCCCCCccH
Confidence 777777766651 346789999999999999999999999998754
No 22
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=98.98 E-value=2.2e-08 Score=100.00 Aligned_cols=208 Identities=10% Similarity=0.122 Sum_probs=122.7
Q ss_pred CceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHH-HHhcCCCceEEEcCCCC--
Q psy16684 61 HQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQ-EARRDSHNMWIVKPSGG-- 137 (429)
Q Consensus 61 ~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~-~~~~~~~~~wI~KP~~~-- 137 (429)
--.||.......+.+|..+...|.+... .+....=-.|+|+++.+.-..+.. .-..+.+-..|+||..+
T Consensus 93 v~vidp~~ai~~~~dR~~~~~~L~~~~~--------~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~G 164 (328)
T PLN02941 93 VTVLDPPDAIQRLHNRQSMLQVVADLKL--------SDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADG 164 (328)
T ss_pred cEEECCHHHHHHHHHHHHHHHHHHHcCC--------cccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCC
Confidence 3468998888888888888777765321 111111348999998643222211 11123345689999999
Q ss_pred -CCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEE
Q psy16684 138 -SQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVW 216 (429)
Q Consensus 138 -s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y 216 (429)
+.|+|+.++.+.+.+.. ...++++|+||++| | .|+|+||+-.. .
T Consensus 165 ss~gh~m~lv~~~~~L~~-----------------------l~~p~~lQEfVnh~----g--~d~RVfVvGd~---v--- 209 (328)
T PLN02941 165 SAKSHKMSLAYDQEGLSK-----------------------LEPPLVLQEFVNHG----G--VLFKVYVVGDY---V--- 209 (328)
T ss_pred CccccceEEecCHHHHHh-----------------------cCCcEEEEEecCCC----C--EEEEEEEECCE---E---
Confidence 99999999998877653 12369999999985 3 69999998876 1
Q ss_pred EEcceEEEEcCcCCCCC--Ccc-C--cccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHH
Q psy16684 217 IARDGFARIAGIKYCKD--NFA-D--NCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVIT 291 (429)
Q Consensus 217 ~y~~g~~R~a~~~y~~~--~~~-~--~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~ 291 (429)
....|.|...+... |.. . .+..++|.+....... +. .+ .+....-..-+.|++++.+
T Consensus 210 ---~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~---~~--~~----------~~~~~~~p~~~~l~~La~~ 271 (328)
T PLN02941 210 ---KCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDAD---NG--GL----------DPEVAELPPRPFLEDLARE 271 (328)
T ss_pred ---EEEEecCCccccccccccccccccccccccccccccccc---cc--cc----------ccccccCCChHHHHHHHHH
Confidence 23456665444311 110 0 1122344333211110 00 00 0000000111235555555
Q ss_pred HHHHHHhhhcCCCcceEEEEEEEEecCC--ccEEEEEeecCCCCCCCCh
Q psy16684 292 ALKSVECIMMGNKHCFELFGFDILLQDN--LNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 292 ~l~s~~~~~~~~~~~Fel~G~D~liD~~--~kpWLLEVN~~Psl~~~~~ 338 (429)
+-.++ .-++||||++.|.+ .+.++||||..|++..-..
T Consensus 272 ~r~al---------Gl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~ 311 (328)
T PLN02941 272 LRRRL---------GLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPG 311 (328)
T ss_pred HHHHh---------CCceEEEEEEeecCCCCceEEEEecCCCccccCCc
Confidence 44444 46789999999974 4789999999999986543
No 23
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.92 E-value=3.5e-08 Score=100.43 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=102.1
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|.||.++++.+++...++.. ......+|||+||+ || ++++-|+
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a----------------~~~~~~vlVEefI~------Gr--Ei~v~Vl 226 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEA----------------FKYDLTVVIEKFIE------AR--EIECSVI 226 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHH----------------HhCCCCEEEECCcC------CE--EEEEEEE
Confidence 457999999988899999999999988877542 11234689999997 54 6777666
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
-.. ...++ .-+-+.+....| -+.+..+... .+..-. + ..+....+.+..+|+
T Consensus 227 g~~--~~~v~--~~~Ei~~~~~~f--~dy~~Ky~~~-------------~~~~~~------~---~~Pa~l~~e~~~~i~ 278 (364)
T PRK14570 227 GNE--QIKIF--TPGEIVVQDFIF--YDYDAKYSTI-------------PGNSIV------F---NIPAHLDTKHLLDIK 278 (364)
T ss_pred CCC--CceEe--eeEEEEeCCCCc--cCHHHhcCCC-------------CCCceE------E---ECCCCCCHHHHHHHH
Confidence 332 12222 122222221111 0000011000 000000 0 012222345667788
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecC-CccEEEEEeecCCCCCCCChhhHHH------HHHHHHHHHhcc
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQD-NLNVCLLEANAAPSMKATDDHDYKL------KYNLIQDALNVI 355 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~-~~kpWLLEVN~~Psl~~~~~~d~~l------k~~li~d~l~lv 355 (429)
+++.++..++ +|..+..+||++|. +++||++|||+.|+|+..+...... ...|++.+++..
T Consensus 279 ~~A~~~~~aL--------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a 346 (364)
T PRK14570 279 EYAFLTYKNL--------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLA 346 (364)
T ss_pred HHHHHHHHHh--------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8888877776 47789999999996 5999999999999999876544333 244555555544
No 24
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.88 E-value=1.8e-08 Score=100.45 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=55.2
Q ss_pred Ccccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCch----HHHHHhhccCCCcccccCCCCCCCcc
Q psy16684 103 NAMPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLS----EFEEWRENKDWSPKERKRSDDPNDIE 176 (429)
Q Consensus 103 ~f~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (429)
..+|+|... +.++..|++++. ..|+||..|++|+|+++++..+ .+.+... .
T Consensus 132 ~~vP~T~v~~~~~~~~~~~~~~g-----~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~------------------~ 188 (312)
T TIGR01380 132 KVIPPTLVTRDKAEIRAFLAEHG-----DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMT------------------Q 188 (312)
T ss_pred CCCCCEEEeCCHHHHHHHHHHcC-----CEEEEECCCCCCceEEEEcCCCccHHHHHHHHH------------------h
Confidence 469999876 457788888775 5899999999999999987522 2223322 1
Q ss_pred cCccceeeeecccCccccCCceeeeEEEEEE
Q psy16684 177 LIPEVYVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 177 ~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
....++++|+||+.+ ..-|+|++|+-
T Consensus 189 ~~~~~~~vQ~yI~~~-----~~~D~Rv~vv~ 214 (312)
T TIGR01380 189 RGREPVMAQRYLPEI-----KEGDKRILLID 214 (312)
T ss_pred ccCCcEEEEeccccc-----cCCCEEEEEEC
Confidence 124689999999852 12499998864
No 25
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.85 E-value=6.6e-08 Score=97.85 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=90.5
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.+.||.++++.+++...++.. ......+|||+||+ |+ ++++-|+
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~----------------~~~~~~vlVEefI~------G~--E~sv~vi 226 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALI----------------FESDSKVMSQSFLS------GT--EVSCGVL 226 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHH----------------HhcCCCEEEEcCcc------cE--EEEEEEE
Confidence 447999999999999999999999988776532 11234689999996 65 5566555
Q ss_pred Eeeec-CCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHH
Q psy16684 207 VTSFS-PLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKI 285 (429)
Q Consensus 207 vts~~-Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I 285 (429)
....+ -.......-.-++....-|+ ....+ ..|....+ .+....+.+.++|
T Consensus 227 ~~~~~g~~~~~~l~~~ei~~~~~~~d---~~~ky---------------~~~~~~~~----------~Pa~l~~~~~~~i 278 (347)
T PRK14572 227 ERYRGGKRNPIALPATEIVPGGEFFD---FESKY---------------KQGGSEEI----------TPARISDQEMKRV 278 (347)
T ss_pred eCccCCCCCceecccEEEecCCCccC---HHHcc---------------CCCCeEEE----------ECCCCCHHHHHHH
Confidence 43110 00001111111111111110 00000 00000000 0111224556677
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhH
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDY 341 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~ 341 (429)
++++.++..++ +|-...++||+++ +++||++|||+.|+|+..+-...
T Consensus 279 ~~~a~~~~~~L--------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p~ 325 (347)
T PRK14572 279 QELAIRAHESL--------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIPQ 325 (347)
T ss_pred HHHHHHHHHHh--------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHHH
Confidence 77777776655 3667889999997 57999999999999998765443
No 26
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.84 E-value=2.5e-08 Score=106.60 Aligned_cols=184 Identities=17% Similarity=0.274 Sum_probs=103.2
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEE-ecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILL-FKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
+|+++... .+...|.+++. ..|+||..|++|+||.+ +++.+++.+.++.. ......
T Consensus 312 VP~~~~~~~~~~~~~~~~~~G-----~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a----------------~~~~~~ 370 (547)
T TIGR03103 312 VPEQQLAGNGEAVEAFLAEHG-----AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKA----------------RQFCDR 370 (547)
T ss_pred CCCEEEECCHHHHHHHHHHhC-----CEEEEECCCCCCcCeEEecCCHHHHHHHHHHH----------------HhcCCc
Confidence 78888774 45666666553 47999999999999997 88888887766432 112347
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCcc
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKW 260 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~w 260 (429)
++||+||+ | .|+|+.|+-.. +..+ +.|.... -..+-...-.||--. .++....- ....+.
T Consensus 371 vlvEe~i~------G--~d~Rv~Vigg~--vvaa------~~R~~~~--V~GDG~~ti~~Lie~-~n~~~~~~~~~~~~i 431 (547)
T TIGR03103 371 VLLERYVP------G--EDLRLVVIDFE--VVAA------AVRRPPE--VIGDGRSSIRDLIEK-QSRRRAAATGGESRI 431 (547)
T ss_pred EEEEEecc------C--CeEEEEEECCE--EEEE------EEecCcE--EEeCCccCHHHHHHH-HhcCccCCCCCcCcc
Confidence 99999997 3 49999766433 1211 1222110 000000000111000 00000000 000111
Q ss_pred chH-HHHHHHHHc------------------------cc--cchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEE
Q psy16684 261 DIQ-NLRLFLTAM------------------------HG--REIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFD 313 (429)
Q Consensus 261 sl~-~l~~~l~~~------------------------~g--~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D 313 (429)
.++ ....+|.+. .| .+..+.+.+.+.+++.++..++ .....|+|
T Consensus 432 ~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~~dvtd~~~~~~~~~A~~aa~~~---------gl~~~GvD 502 (547)
T TIGR03103 432 PLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTIHDVTEQLHPDLREAAERAARAL---------DIPVVGID 502 (547)
T ss_pred CCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCeeEecccccCHHHHHHHHHHHHHh---------CCCeEEEE
Confidence 111 112222110 11 1234567788888888777765 45678999
Q ss_pred EEecCCccE--EEEEeecCCCCCCCC
Q psy16684 314 ILLQDNLNV--CLLEANAAPSMKATD 337 (429)
Q Consensus 314 ~liD~~~kp--WLLEVN~~Psl~~~~ 337 (429)
|++++-.+| .+||||++|+|..-.
T Consensus 503 ~i~~~~~~p~~~iiEvN~~Pgl~~h~ 528 (547)
T TIGR03103 503 FLVPDVTGPDYVIIEANERPGLANHE 528 (547)
T ss_pred EEeccCCCCCeEEEEecCCccccccC
Confidence 999876666 799999999998764
No 27
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.78 E-value=7.8e-08 Score=87.62 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=56.5
Q ss_pred cCCcccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecC----chHHHHHhhccCCCcccccCCCCCCC
Q psy16684 101 LSNAMPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKK----LSEFEEWRENKDWSPKERKRSDDPND 174 (429)
Q Consensus 101 ~~~f~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (429)
..+++|+|++- ..++..|++++. .||+||..+..|+|+++++. ++.+.+.+.
T Consensus 8 f~~~~P~T~vs~~~~~i~~f~~~~~-----~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~----------------- 65 (173)
T PF02955_consen 8 FPELIPPTLVSRDKEEIRAFIEEHG-----DIVLKPLDGMGGRGVFRISRDDPNLNSILETLT----------------- 65 (173)
T ss_dssp GCCCS--EEEES-HHHHHHHHHHHS-----SEEEEESS--TTTT-EEE-TT-TTHHHHHHHHT-----------------
T ss_pred ccccCcCEEEECCHHHHHHHHHHCC-----CEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHH-----------------
Confidence 45899999997 467888888886 59999999999999999976 344444432
Q ss_pred cccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcC
Q psy16684 175 IELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIK 229 (429)
Q Consensus 175 ~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~ 229 (429)
.....++++|+||+. . -+| |.|+.++=-. +-+.+.|.....
T Consensus 66 -~~~~~~~mvQ~flp~-i-~~G---DkRii~~nG~--------~~~av~R~P~~g 106 (173)
T PF02955_consen 66 -KNGERPVMVQPFLPE-I-KEG---DKRIILFNGE--------PSHAVRRIPAKG 106 (173)
T ss_dssp -TTTTS-EEEEE--GG-G-GG----EEEEEEETTE--------E-SEEEEE--SS
T ss_pred -hcCCccEEEEecccc-c-cCC---CEEEEEECCE--------EhHHeecCCCCC
Confidence 123468999999986 3 366 7788654332 234677877654
No 28
>PRK12458 glutathione synthetase; Provisional
Probab=98.75 E-value=1e-07 Score=96.19 Aligned_cols=80 Identities=26% Similarity=0.351 Sum_probs=55.1
Q ss_pred cccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchH--HHHHhhccCCCcccccCCCCCCCcccCc
Q psy16684 104 AMPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSE--FEEWRENKDWSPKERKRSDDPNDIELIP 179 (429)
Q Consensus 104 f~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
.+|.|++.. .++..|++++. +...|+||..|+.|+||+++++.+. +...++.. ...
T Consensus 140 ~vP~T~v~~~~~~~~~~~~~~~---~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~-----------------~~~ 199 (338)
T PRK12458 140 VRPTTHISRNKEYIREFLEESP---GDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFY-----------------SGD 199 (338)
T ss_pred CCCCEEEeCCHHHHHHHHHHcC---CCeEEEEECCCCCccCeEEEecCChhhHHHHHHHH-----------------hhC
Confidence 689998773 56777877663 2248999999999999999975542 32322210 123
Q ss_pred cceeeeecccCccccCCceeeeEEEEEEe
Q psy16684 180 EVYVAQKYITNPYLLEGRKFDMRMYVLVT 208 (429)
Q Consensus 180 ~~~IvQkYI~~PlLi~GrKFDlRvyvLvt 208 (429)
.++++|+||+.+ ...|+|++|+-.
T Consensus 200 ~~~ivQeyI~~~-----~~gDiRv~vv~g 223 (338)
T PRK12458 200 GYVIAQEYLPGA-----EEGDVRILLLNG 223 (338)
T ss_pred CCEEEEEcccCC-----CCCCEEEEEECC
Confidence 479999999853 236999996433
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.60 E-value=2.2e-06 Score=86.78 Aligned_cols=153 Identities=12% Similarity=0.216 Sum_probs=88.7
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+. +++..+.+++ +-.+|+||..++ .|+|++++++.+++....+.. ....
T Consensus 113 ~p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~------------------~~~~ 170 (352)
T TIGR01161 113 VPPFLVIKDEEELDAALQEL----GFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL------------------GDRE 170 (352)
T ss_pred CCCccEeCCHHHHHHHHHHc----CCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc------------------CCCc
Confidence 46666663 4555555443 347999999875 899999999999988766421 2347
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEE-cCcCCCCCCccCcccccccccccccCCCcCCCCcc
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARI-AGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKW 260 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~-a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~w 260 (429)
+|||+||+. |+ .+.+.++... +|-.++ .... + .|-.+. ..+
T Consensus 171 ~lvEe~I~~-----~~--E~sv~~~~~~----------~G~~~~~~~~~----~-----~~~~g~------------~~~ 212 (352)
T TIGR01161 171 CIVEEFVPF-----ER--ELSVIVARSA----------DGETAFYPVVE----N-----IHQDGI------------LRY 212 (352)
T ss_pred EEEEecCCC-----Ce--EEEEEEEEcC----------CCCEEEECCcc----c-----EEeCCE------------EEE
Confidence 999999972 22 3444333221 111111 1000 0 000000 000
Q ss_pred chHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 261 DIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 261 sl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
+. .+....+.+.+++.+++.+.+.++ ++...+++||+++++++||++|||..|+-+.
T Consensus 213 ~~----------~p~~~~~~~~~~~~~~a~~i~~~l--------~~~G~~~ve~~~~~dg~~~v~EinpR~~~sg 269 (352)
T TIGR01161 213 VV----------APAAVPDAIQARAEEIARRLMEEL--------GYVGVLAVEMFVLPDGRLLINELAPRVHNSG 269 (352)
T ss_pred EE----------CCCCCCHHHHHHHHHHHHHHHHHc--------CceeEEEEEEEEeCCCcEEEEEecCCCCCcC
Confidence 00 011111233455666665555554 2458899999999999999999999997543
No 30
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.59 E-value=1.1e-06 Score=91.64 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=99.9
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
+.+...+++.+ +-..|+||..++.|+|++++++.+++.+.+..... .... ......+|||+||+
T Consensus 126 ~~e~~~~~~~~----g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~--------~~~f--g~~~~~vlIEefi~-- 189 (434)
T PLN02257 126 PAAAKKYIKEQ----GAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLV--------KGAF--GSAGSEVVVEEFLD-- 189 (434)
T ss_pred HHHHHHHHHHc----CCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHh--------hhhc--cCCCCeEEEEECCC--
Confidence 45566666554 23689999999999999999999988776543100 0000 01235799999998
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcce--EEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDG--FARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFL 269 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g--~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l 269 (429)
|+ .+-+.+++.+. .++..-.. .-|+- .|+.. +..|.+-...
T Consensus 190 ----G~--E~Sv~~~~dG~---~~~pl~~~~dhkr~~--d~d~g--------------------~ntggmg~~s------ 232 (434)
T PLN02257 190 ----GE--EASFFALVDGE---NAIPLESAQDHKRVG--DGDTG--------------------PNTGGMGAYS------ 232 (434)
T ss_pred ----CC--EEEEEEEECCC---cEEEEEeeeeccccc--CCCCC--------------------CCCCCCeeEe------
Confidence 44 33333333321 11110000 00110 00000 0011100000
Q ss_pred HHccccchHHHHHHHH-HHHHHHHHHHHHhhhcCCCcceEEEEEEEEec-CCccEEEEEeecCCCCCCCChhhHHHHHHH
Q psy16684 270 TAMHGREIVDELFQKI-AKVVITALKSVECIMMGNKHCFELFGFDILLQ-DNLNVCLLEANAAPSMKATDDHDYKLKYNL 347 (429)
Q Consensus 270 ~~~~g~~~~~~l~~~I-~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD-~~~kpWLLEVN~~Psl~~~~~~d~~lk~~l 347 (429)
-.+...+.+.+++ +.++..++.++...- -....++.+|||++ +++.||+||+|+.|+..........+...|
T Consensus 233 ---p~p~l~~~~~~~i~~~i~~~~~~al~~~g---~~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl 306 (434)
T PLN02257 233 ---PAPVLTPELESKVMETIIYPTVKGMAAEG---CKFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDL 306 (434)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCH
Confidence 0000123344443 344444444443311 13568889999999 788999999999999865544555567777
Q ss_pred HHHHHhccc
Q psy16684 348 IQDALNVID 356 (429)
Q Consensus 348 i~d~l~lv~ 356 (429)
++-++.++.
T Consensus 307 ~~~~~~~~~ 315 (434)
T PLN02257 307 AQVLLAACK 315 (434)
T ss_pred HHHHHHHHc
Confidence 777666653
No 31
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.55 E-value=1.2e-06 Score=86.30 Aligned_cols=176 Identities=23% Similarity=0.342 Sum_probs=97.9
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchH---------HHHHhhccCCCcccccCCCCCCCcccCcccee
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSE---------FEEWRENKDWSPKERKRSDDPNDIELIPEVYV 183 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 183 (429)
+++.+|+... .....++||+.|++|+||.++...+. +..... ......||
T Consensus 62 ~~l~~~l~~~---~~~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~l 120 (285)
T PF14397_consen 62 EDLEEFLRKH---APDRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLE------------------SLGGKDYL 120 (285)
T ss_pred HHHHHHHHhc---cCCcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHH------------------hcCCccEE
Confidence 4566666544 23489999999999999999875542 111111 01111899
Q ss_pred eeecccC-ccc--c-CCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccC--------ccccccccc-cccc
Q psy16684 184 AQKYITN-PYL--L-EGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFAD--------NCMHLTNTA-IQLS 250 (429)
Q Consensus 184 vQkYI~~-PlL--i-~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~--------~~~HLTN~s-iqk~ 250 (429)
||++|+. |.+ + ..---+||+.+++.. -.+++ -..+.|++...-..+|+.. ....+...+ ....
T Consensus 121 iqe~i~qh~~~~~~~~~svnTiRvvT~~~~---~~~~~-~~a~lRlg~~~~~~DN~~~Ggi~~~ID~~tGl~~~~~~~~~ 196 (285)
T PF14397_consen 121 IQERIEQHPELAALSPSSVNTIRVVTFLDD---GEVEV-LMAMLRLGRGGSGVDNFHQGGIGVGIDLATGLGRFAGYDQD 196 (285)
T ss_pred EEecccCCHHHHhhCCCCCCcEEEEEEEeC---CeeEE-EEEEEEeCCCCCcccccCCCCEEEEEecCCCccccccccCC
Confidence 9999984 222 2 234558999888765 22221 2467888854444444431 111122221 0000
Q ss_pred CCCc----CCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEE
Q psy16684 251 GENL----SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLE 326 (429)
Q Consensus 251 ~~~y----~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLE 326 (429)
...| ..|. .+ .|... --|+++.+++.++... +. .+...|.||.||++| |.|||
T Consensus 197 ~~~~~~HPdTg~--~~----------~g~~I--P~w~~~~~l~~~~~~~----~p----~~~~iGWDvait~~G-p~llE 253 (285)
T PF14397_consen 197 GERYEHHPDTGA--PF----------SGFQI--PNWDEILELAKEAHRK----FP----GLGYIGWDVAITEDG-PVLLE 253 (285)
T ss_pred CCEeeeCCCCCC--cc----------CCccC--CCHHHHHHHHHHHHHH----CC----CCCeEEEEEEEcCCC-cEEEE
Confidence 0000 0110 00 01000 1255555555554433 22 467889999999999 99999
Q ss_pred eecC--CCCCCC
Q psy16684 327 ANAA--PSMKAT 336 (429)
Q Consensus 327 VN~~--Psl~~~ 336 (429)
.|+. |++...
T Consensus 254 ~N~~~~pgl~~~ 265 (285)
T PF14397_consen 254 GNARWDPGLMIQ 265 (285)
T ss_pred eeCCCCCCcHhh
Confidence 9999 998744
No 32
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.54 E-value=2.2e-07 Score=83.81 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=20.9
Q ss_pred cceEEEEEEEEecCCccEEEEEeecCCC
Q psy16684 305 HCFELFGFDILLQDNLNVCLLEANAAPS 332 (429)
Q Consensus 305 ~~Fel~G~D~liD~~~kpWLLEVN~~Ps 332 (429)
+...+.|+||++++ .+||+||||..|+
T Consensus 133 gl~G~~giD~I~~~-~~~~viEINPR~t 159 (161)
T PF02655_consen 133 GLRGYVGIDFILDD-GGPYVIEINPRFT 159 (161)
T ss_dssp T--EEEEEEEEESS--SEEEEEEESS--
T ss_pred CCeeeEeEEEEEeC-CcEEEEEEcCCCC
Confidence 68899999999999 8999999999875
No 33
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.46 E-value=9.3e-06 Score=80.98 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=51.8
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+|+.+. +++.... +...-+..+|+||..++.|+|++++++.+++..+... ...+
T Consensus 126 ~p~~~~~~~~~~~~~~~--~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~--------------------~~~~ 183 (326)
T PRK12767 126 TPKSYLPESLEDFKAAL--AKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY--------------------VPNL 183 (326)
T ss_pred CCCEEcccCHHHHHhhh--hcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh--------------------CCCe
Confidence 57887764 2333210 1222245799999999999999999999999887752 2389
Q ss_pred eeeecccCccccCCceeeeEEEE
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYV 205 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyv 205 (429)
+||+||. |+-+++.+++
T Consensus 184 lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 184 IIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred EEEeccC------CceEEEEEEE
Confidence 9999995 6767666654
No 34
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.44 E-value=1.9e-06 Score=86.07 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=98.2
Q ss_pred HHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccC
Q psy16684 116 ALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLE 195 (429)
Q Consensus 116 ~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~ 195 (429)
...++++....+-..++||+...-.-|+..++...+.....+.. ....+..++++||.
T Consensus 131 ~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a----------------~~~d~~vl~e~~~~------ 188 (317)
T COG1181 131 SVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELA----------------FKYDRDVLREQGIT------ 188 (317)
T ss_pred hHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHH----------------HHhCCceeeccCCC------
Confidence 44455665555668999999988889999998887776543221 22456778899887
Q ss_pred CceeeeEEEEE---Eee-----ecC--CeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHH
Q psy16684 196 GRKFDMRMYVL---VTS-----FSP--LTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNL 265 (429)
Q Consensus 196 GrKFDlRvyvL---vts-----~~P--l~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l 265 (429)
||++.+.+.-- ... .-| -.+|.|. ..+++. +|....
T Consensus 189 ~rei~v~vl~~~~~~~~l~~~eI~~~~~~fydye------------~Ky~~~------------------gg~~~~---- 234 (317)
T COG1181 189 GREIEVGVLGNDYEEQALPLGEIPPKGEEFYDYE------------AKYLST------------------GGAQYD---- 234 (317)
T ss_pred cceEEEEecCCcccceecCceEEecCCCeEEeee------------ccccCC------------------CCceee----
Confidence 66665554211 000 111 1233222 222220 111000
Q ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecC-CccEEEEEeecCCCCCCCChhh
Q psy16684 266 RLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQD-NLNVCLLEANAAPSMKATDDHD 340 (429)
Q Consensus 266 ~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~-~~kpWLLEVN~~Psl~~~~~~d 340 (429)
......+.+.++|++++.++.+++ .|-.+-|+||++|+ ++++||+|||++|+|+..+-..
T Consensus 235 -------~pa~lt~~~~~~i~~lA~~a~~al--------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 235 -------IPAGLTDEIHEEIKELALRAYKAL--------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHhc--------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccch
Confidence 112235677788888888888876 47788999999999 8999999999999988876543
No 35
>PRK07206 hypothetical protein; Provisional
Probab=98.42 E-value=5.6e-06 Score=85.55 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=54.9
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. +|+..++++..- .+..+|+||..++.|+|++++++.+++.+..+..... . ... ......+
T Consensus 123 ~p~~~~~~~~~e~~~~~~~~g~-~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~------~-~~~--~~~~~~~ 192 (416)
T PRK07206 123 AARQINTADWEEAEAWLRENGL-IDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGK------A-NKL--GLVNETV 192 (416)
T ss_pred cccEEecCCHHHHHHHHHhcCC-CCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhc------c-ccC--CCCCCeE
Confidence 57777764 566666655321 1237899999999999999999999988776532100 0 000 1123579
Q ss_pred eeeecccCccccCCceeeeEEE
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMY 204 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvy 204 (429)
+||+||+ |.-|.+-++
T Consensus 193 lvEe~i~------G~E~sv~~~ 208 (416)
T PRK07206 193 LVQEYLI------GTEYVVNFV 208 (416)
T ss_pred EEEEccc------cEEEEEEEE
Confidence 9999997 556655443
No 36
>PRK06849 hypothetical protein; Provisional
Probab=98.39 E-value=3.7e-06 Score=86.30 Aligned_cols=71 Identities=21% Similarity=0.323 Sum_probs=46.8
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
+|+|+.+. +++..+..+. .+..+|+||..++.|+|+.++.+.+.+.... .....++
T Consensus 131 vP~t~~v~~~~~l~~~~~~~---~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~-------------------~~~~~~~ 188 (389)
T PRK06849 131 VPKTYLITDPEAIRNFMFKT---PHTPYVLKPIYSRFVRRVDLLPKEAALKELP-------------------ISKDNPW 188 (389)
T ss_pred CCCEEEeCCHHHHHHHhhcC---CCCcEEEEeCcccCCCeEEEecCHHHhcccc-------------------cCCCCCe
Confidence 68999873 4554443322 2458999999999999999987744332110 1123479
Q ss_pred eeeecccCccccCCceeeeEE
Q psy16684 183 VAQKYITNPYLLEGRKFDMRM 203 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRv 203 (429)
|||+||+ |..+.+..
T Consensus 189 ivQe~I~------G~e~~~~~ 203 (389)
T PRK06849 189 VMQEFIQ------GKEYCSYS 203 (389)
T ss_pred EEEEEec------CCeEEEEE
Confidence 9999998 55555544
No 37
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.39 E-value=1.7e-06 Score=95.56 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=52.8
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEE-ecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILL-FKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
+|+++.+ +++...+.+++ +-..|+||..|+.|+|+.+ +++.+++....+.. ......
T Consensus 229 vP~~~~v~s~~~a~~~a~~i----G~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a----------------~~~~~~ 288 (727)
T PRK14016 229 VPEGRVVTSAEDAWEAAEEI----GYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA----------------SKESSD 288 (727)
T ss_pred CCCeeEeCCHHHHHHHHHHc----CCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH----------------HHhCCe
Confidence 5666655 34555555443 3478999999999999998 89988887766432 112357
Q ss_pred eeeeecccCccccCCceeeeEEEEE
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
++||+||+ | .|+|++|+
T Consensus 289 viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 289 VIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred EEEEEecC------C--ceEEEEEE
Confidence 99999997 3 48998765
No 38
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.38 E-value=1.2e-05 Score=90.14 Aligned_cols=156 Identities=12% Similarity=0.155 Sum_probs=91.4
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-..|+||..++.+.||.++++.+++.+.++.. ......++|++||.. ||-+.+ -|+
T Consensus 610 g~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a----------------~~~~~~vlVEe~i~~-----grEi~v--~vl 666 (809)
T PRK14573 610 SFPMFVKTAHLGSSIGVFEVHNVEELRDKISEA----------------FLYDTDVFVEESRLG-----SREIEV--SCL 666 (809)
T ss_pred CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHH----------------HhcCCcEEEEeccCC-----CEEEEE--EEE
Confidence 347899999999999999999999998776532 112346899998852 554443 333
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
.... ..+......-+.....|- +....+ .. .|..-. .+ ..+....+.+.++|+
T Consensus 667 ~~~~---~~~~~~~~~e~~~~~~f~--dy~~Ky------~~--------~g~~~~-----~~---~~Pa~l~~~~~~~i~ 719 (809)
T PRK14573 667 GDGS---SAYVIAGPHERRGSGGFI--DYQEKY------GL--------SGKSSA-----QI---VFDLDLSKESQEQVL 719 (809)
T ss_pred eCCC---CceEeccceEEccCCCee--Cchhcc------cC--------CCCCce-----EE---ecCCCCCHHHHHHHH
Confidence 3321 111100000011110000 000000 00 000000 00 012222355667788
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhh
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHD 340 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d 340 (429)
+++.++..++ +|-....+||++|++++||++|||+.|+|+..+...
T Consensus 720 ~~a~~~~~aL--------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~p 765 (809)
T PRK14573 720 ELAERIYRLL--------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPFL 765 (809)
T ss_pred HHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHHH
Confidence 8877777766 488899999999999999999999999999876543
No 39
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.38 E-value=2.2e-05 Score=81.46 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=101.3
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ +.+...++++. +-.+|+||..++.|+|+.++++.+++.++.+..... ... ......+
T Consensus 117 ~p~~~~~~~~~~~~~~~~~~----~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~--------~~~--~~~~~~v 182 (420)
T PRK00885 117 TAAYETFTDAEEALAYLDEK----GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAG--------NKF--GDAGARV 182 (420)
T ss_pred CCCeEEeCCHHHHHHHHHHc----CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhc--------ccc--cCCCCeE
Confidence 5665555 34555665543 347899999999999999999999988776532100 000 0123579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
|||+||+ |+-|.+- +++.. .....+....-.-|.....+. .| |. +...++.
T Consensus 183 lvEe~i~------G~E~sv~--~~~~g-~~~~~~~~~~~~~~~~~~~~~--------~~-~g-----------~~~~~~p 233 (420)
T PRK00885 183 VIEEFLD------GEEASFF--AFVDG-ENVLPLPTAQDHKRAGDGDTG--------PN-TG-----------GMGAYSP 233 (420)
T ss_pred EEEEccC------CcEEEEE--EEECC-CceEeceeeEeeeecccCCCC--------CC-CC-----------CCceecc
Confidence 9999997 5545444 33332 111111111111111111000 00 00 0011110
Q ss_pred HHHHHHHHHccccchHHHHHHHHHH-HHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhH
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAK-VVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDY 341 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~-ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~ 341 (429)
. ....+.+.+++.+ ++..++.++...- -.....+.+||++++++ |+|||||+.|+-........
T Consensus 234 ~-----------~~l~~~~~~~~~~~i~~~~~~al~~~g---l~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~ 298 (420)
T PRK00885 234 A-----------PVVTEEVVERVMEEIIKPTVKGMAAEG---IPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLP 298 (420)
T ss_pred C-----------CCCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhh
Confidence 0 0011223334443 4444444443211 11347789999999876 99999999997543334444
Q ss_pred HHHHHHHHHHHhccc
Q psy16684 342 KLKYNLIQDALNVID 356 (429)
Q Consensus 342 ~lk~~li~d~l~lv~ 356 (429)
.+..++++-++.++.
T Consensus 299 ~~~~d~~~~~~~~~~ 313 (420)
T PRK00885 299 RLKSDLVELLLAAAD 313 (420)
T ss_pred hccCCHHHHHHHHHc
Confidence 455566666666654
No 40
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.38 E-value=8.5e-06 Score=83.27 Aligned_cols=148 Identities=12% Similarity=0.161 Sum_probs=88.0
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCC-CCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGG-SQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~-s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+. +++..+.+++ +-.+|+||..+ +.|+|++++++.+++....... ...+
T Consensus 115 ~p~~~~v~s~~~l~~~~~~~----g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~------------------~~~~ 172 (372)
T PRK06019 115 VAPFAVVDSAEDLEAALADL----GLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL------------------GSVP 172 (372)
T ss_pred CCCceEeCCHHHHHHHHHHc----CCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc------------------CCCC
Confidence 35555553 4555555443 45899999975 6899999999999998776531 2457
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeec-----CCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCC
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFS-----PLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQ 256 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~-----Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~ 256 (429)
+|||+||+- |+ .+.+-+...... |.....+++|....+..
T Consensus 173 ~ivEe~I~~-----~~--E~sv~~~~~~~G~~~~~p~~e~~~~~gi~~~~~~---------------------------- 217 (372)
T PRK06019 173 CILEEFVPF-----ER--EVSVIVARGRDGEVVFYPLVENVHRNGILRTSIA---------------------------- 217 (372)
T ss_pred EEEEecCCC-----Ce--EEEEEEEECCCCCEEEeCCcccEEeCCEEEEEEC----------------------------
Confidence 999999982 22 233333222100 11111111111111100
Q ss_pred CCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 257 GRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 257 g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
+....+.+.+++++++.+++.++ ++...+++||+++++++++++|||..|.-+
T Consensus 218 -----------------pa~~~~~~~~~~~~~a~~i~~~L--------~~~G~~~vEff~~~dg~~~v~EinpR~~~s 270 (372)
T PRK06019 218 -----------------PARISAELQAQAEEIASRIAEEL--------DYVGVLAVEFFVTGDGELLVNEIAPRPHNS 270 (372)
T ss_pred -----------------CCCCCHHHHHHHHHHHHHHHHHc--------CccceeEEEEEEcCCCeEEEEEecCCccCc
Confidence 11112334455666666665554 245788999999999999999999999754
No 41
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.35 E-value=1.4e-05 Score=81.50 Aligned_cols=159 Identities=13% Similarity=0.247 Sum_probs=90.4
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. +++..+.++. +-.+|+||..++.|+|+.++++.+++....+.... . . ......+
T Consensus 116 ~p~~~~~~~~~~~~~~~~~~----g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~----~-------~-~~~~~~~ 179 (380)
T TIGR01142 116 TSRYMFADSLDELREAVEKI----GYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQE----G-------A-RGGAGRV 179 (380)
T ss_pred CCCceEeCCHHHHHHHHHHc----CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHh----h-------c-cCCCCCE
Confidence 45655553 4455554443 34799999999999999999999998877643200 0 0 1123579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
|||+||+. + .++.+.+.... +|-+.+... ..+ .|.. ..| . ..|
T Consensus 180 ivEe~i~~-----~--~E~sv~~~~~~----------~g~~~~~~~---~~~-----~~~~--------~~~-~-~~~-- 222 (380)
T TIGR01142 180 IVEEFIDF-----D--YEITLLTVRHV----------DGNTTFCAP---IGH-----RQID--------GDY-H-ESW-- 222 (380)
T ss_pred EEEEecCC-----C--EEEEEEEEEcC----------CCCEEEecC---cce-----EEeC--------Cee-E-EEE--
Confidence 99999972 1 34444333211 111111100 000 0000 000 0 000
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.+....+.+.++|.+++.+++.++. +...+++||+++++ .|||+|||..|+-+.
T Consensus 223 ----------~p~~l~~~~~~~i~~~a~~~~~~l~--------~~G~~~ie~~~~~~-~~~viEinpR~~~~~ 276 (380)
T TIGR01142 223 ----------QPQEMSEKALEEAQRIAKRITDALG--------GYGLFGVELFVKGD-EVIFSEVSPRPHDTG 276 (380)
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHcC--------CcceEEEEEEEECC-cEEEEEeecCCCCCc
Confidence 0111223445567777777666652 46789999999876 799999999998653
No 42
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.32 E-value=8.2e-06 Score=83.63 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=48.8
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
.+...++++. +-..|+||..++.|+|+.++++.+++...++.... ......+|||+||+
T Consensus 92 ~ea~~~~~~~----g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~--------------~~~~~~vlvEe~i~--- 150 (379)
T PRK13790 92 KDALTYIENC----ELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYG--------------DEEEGTVVFETFLE--- 150 (379)
T ss_pred HHHHHHHHhc----CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh--------------cCCCCeEEEEEccc---
Confidence 4455555443 34789999999999999999999998877653210 01234799999997
Q ss_pred ccCCceeeeEEEE
Q psy16684 193 LLEGRKFDMRMYV 205 (429)
Q Consensus 193 Li~GrKFDlRvyv 205 (429)
|+-+.+.+++
T Consensus 151 ---G~E~sv~~~~ 160 (379)
T PRK13790 151 ---GEEFSLMTFV 160 (379)
T ss_pred ---CceEEEEEEe
Confidence 6677776543
No 43
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.31 E-value=1.4e-05 Score=81.09 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=92.8
Q ss_pred eEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEE-
Q psy16684 129 MWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLV- 207 (429)
Q Consensus 129 ~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLv- 207 (429)
..|+||..++.|+|++++++.+++.+..+..... . . ....+.++||+||. |..|.+-+++-.
T Consensus 151 PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~-------~-~---~~~~~~~iIEEfI~------G~e~sv~~f~s~~ 213 (358)
T PRK13278 151 PVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIER-------G-L---ITEVEEAIIQEYVV------GVPYYFHYFYSPI 213 (358)
T ss_pred CEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhc-------c-c---cCCCCeEEEEecCC------CcEEEEEEEEecc
Confidence 7899999999999999999999987766432100 0 0 00146799999998 666666655421
Q ss_pred ee-ecC---CeEEEE-cceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCccchHHHHHHHHHccccchHHHH
Q psy16684 208 TS-FSP---LTVWIA-RDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKWDIQNLRLFLTAMHGREIVDEL 281 (429)
Q Consensus 208 ts-~~P---l~~y~y-~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~wsl~~l~~~l~~~~g~~~~~~l 281 (429)
.. +.- -+-|.- .+|+.|+-...+..... .|.| ..|+ | +....+.+
T Consensus 214 ~~~~e~l~id~r~~~~~d~~~r~p~~~~~~~~~---------------~p~~v~~Gn-~-------------P~~~resl 264 (358)
T PRK13278 214 KNRLELLGIDRRYESNIDGLVRIPAKDQLELGI---------------DPTYVVVGN-I-------------PVVLRESL 264 (358)
T ss_pred CCeEEEEeeceeeeecccceeeccchhhhhccc---------------CCceeEecc-e-------------eccchHhH
Confidence 01 000 011222 23555543332210110 1111 1221 1 22233566
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCC
Q psy16684 282 FQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAP 331 (429)
Q Consensus 282 ~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~P 331 (429)
.+++.+.+.+.+.++.+.+. .....-|.+|+++++++++|++|||+.+
T Consensus 265 l~~v~~~~~~~v~a~~~~~~--~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 265 LPQVFEYGERFVETSKELVP--PGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HHHHHHHHHHHHHHHHHhcC--ccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 67777777777777666553 2455778889999999999999998876
No 44
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.30 E-value=1.5e-05 Score=82.91 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=96.7
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
.++...+++++ +-..|+||..++.|+|+.++++.+++.+.++.... .... ......+|||+||+
T Consensus 132 ~~ea~~~~~~~----~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~--------~~~~--g~~~~~vlIEEfl~-- 195 (426)
T PRK13789 132 YSSSLSYLESE----MLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFK--------DKKF--GQSGNQVVIEEFME-- 195 (426)
T ss_pred HHHHHHHHHhc----CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHh--------hccc--cCCCCeEEEEECcC--
Confidence 34555555543 34789999999999999999999988776643210 0000 01124799999998
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
|+-+.+ -++... -.+..+- .++--..-|+-+. .++ .|.+-+..
T Consensus 196 ----G~E~Sv--~~~~dg---~~~~~lp--~~~d~k~~~d~d~----------------g~~--tggmg~~~-------- 238 (426)
T PRK13789 196 ----GQEASI--FAISDG---DSYFLLP--AAQDHKRAFDGDQ----------------GPN--TGGMGAYC-------- 238 (426)
T ss_pred ----CeEEEE--EEEECC---CEEEEcc--ceEecccccCCCC----------------CCC--CCCceEEe--------
Confidence 443333 222221 1111110 0110000010000 000 11111100
Q ss_pred cccc-chHHHHHHHHHH-HHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHH
Q psy16684 272 MHGR-EIVDELFQKIAK-VVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQ 349 (429)
Q Consensus 272 ~~g~-~~~~~l~~~I~~-ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~ 349 (429)
+. ...+.+.+++++ ++..++.++...- ..+..++.+|||++++++||+||+|..|+-.....+...+...|++
T Consensus 239 --P~p~~~~~~~~~i~~~i~~~~~~~l~~~g---~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~ 313 (426)
T PRK13789 239 --PAPVITEAILQKVKERIFDPMFDDFRKKG---HPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLE 313 (426)
T ss_pred --eCCCCCHHHHHHHHHHHHHHHHHHHHHhC---CCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHH
Confidence 00 012344445543 3334444443311 1367899999999999999999999999865444444444445555
Q ss_pred HHHhcc
Q psy16684 350 DALNVI 355 (429)
Q Consensus 350 d~l~lv 355 (429)
-++.++
T Consensus 314 ~~~~~~ 319 (426)
T PRK13789 314 LLYAAS 319 (426)
T ss_pred HHHHHH
Confidence 444443
No 45
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.28 E-value=6.6e-06 Score=90.13 Aligned_cols=51 Identities=24% Similarity=0.382 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEE--------EEEeecCCCCCCC
Q psy16684 277 IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVC--------LLEANAAPSMKAT 336 (429)
Q Consensus 277 ~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpW--------LLEVN~~Psl~~~ 336 (429)
..+.+-+..+++++++..++ ...+-|+|+++.+--+|| +||||++|++..-
T Consensus 659 vTd~ihp~~~~lA~~aa~al---------gl~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 659 MTDEMDDSYKQIAIRIATAV---------GAAICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMH 717 (737)
T ss_pred cccccCHHHHHHHHHHHHhc---------CCCEEEEEEEecCCCCCccccccceEEEEEcCCcchhhh
Confidence 34566677777777777765 345789999998655544 8999999999753
No 46
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.27 E-value=3.2e-05 Score=80.23 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=46.2
Q ss_pred ccceeec--chhHHHHHHHHhcCCCce-EEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNM-WIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~-wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|++..+ +.+...+.++. +-. +|+||..++.|+|+.++++.+++....+...... . ......
T Consensus 119 ~p~~~~~~~~~~~~~~~~~~----g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~---------~--g~~~~~ 183 (423)
T TIGR00877 119 TAEYEVFTDPEEALSYIQEK----GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQK---------F--GDAGER 183 (423)
T ss_pred CCCeEEECCHHHHHHHHHhc----CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHh---------c--CCCCCe
Confidence 4555444 34556666554 235 9999999999999999999998877654321000 0 012357
Q ss_pred eeeeeccc
Q psy16684 182 YVAQKYIT 189 (429)
Q Consensus 182 ~IvQkYI~ 189 (429)
++||+||+
T Consensus 184 ~lvEe~i~ 191 (423)
T TIGR00877 184 VVIEEFLD 191 (423)
T ss_pred EEEEECcc
Confidence 99999997
No 47
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.24 E-value=7.8e-06 Score=92.10 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=53.2
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEE-ecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILL-FKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
+|++..+. ++...+.+++ +...++||..+++|+||.+ +++.+++.+..+.. ......
T Consensus 228 vP~~~~~~s~~ea~~~~~~i----g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a----------------~~~~~~ 287 (864)
T TIGR02068 228 VPEGTVVQSAEDAWEAAQDL----GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAA----------------VEESSG 287 (864)
T ss_pred CCCEEEECCHHHHHHHHHHc----CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHH----------------HhhCCc
Confidence 67776663 4555555554 3478999999999999998 89988887765432 112357
Q ss_pred eeeeecccCccccCCceeeeEEEEE
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
++||+||+ | -|+|++|+
T Consensus 288 vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 288 VIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred EEEEEecc------C--CEEEEEEE
Confidence 99999996 5 48898664
No 48
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.23 E-value=2.6e-05 Score=88.36 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=91.1
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. .+...+.+.. +-.+|+||..++.|+|++++++.+++....+... ......+
T Consensus 122 ~P~~~~v~~~~e~~~~~~~~----~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~---------------~~~~~~~ 182 (887)
T PRK02186 122 VPRTHALALRAVALDALDGL----TYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALR---------------RAGTRAA 182 (887)
T ss_pred CCCEEEeCCHHHHHHHHHhC----CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHH---------------hcCCCcE
Confidence 47777763 4555555443 3479999999999999999999999887664320 1124679
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCccc
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKWD 261 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~ws 261 (429)
|||+||+ |.-|.+.+++.-.....+. ..+ .+ ... .+.| +.|..+
T Consensus 183 lvEEfI~------G~E~sVe~i~~~g~~~i~~-------i~~----k~-~~~----------------~~~~ve~g~~~- 227 (887)
T PRK02186 183 LVQAYVE------GDEYSVETLTVARGHQVLG-------ITR----KH-LGP----------------PPHFVEIGHDF- 227 (887)
T ss_pred EEeeccc------CCcEEEEEEEECCcEEEEE-------EEe----ee-cCC----------------CCCeEEecccc-
Confidence 9999997 6667766644321100011 111 00 000 0001 111110
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
+....+...++|.+.+.+++.++. -.+..+.+||+++++ .|||||||..|+=
T Consensus 228 ------------P~~l~~~~~~~l~~~~~~~l~aLG-------~~~G~~hvE~~~t~~-g~~liEIn~R~~G 279 (887)
T PRK02186 228 ------------PAPLSAPQRERIVRTVLRALDAVG-------YAFGPAHTELRVRGD-TVVIIEINPRLAG 279 (887)
T ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHcC-------CCcCceEEEEEEECC-CEEEEEECCCCCC
Confidence 111112334566666666666641 125678999999865 5999999988763
No 49
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.20 E-value=1.4e-05 Score=80.54 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=88.0
Q ss_pred eEEEcCCCCCC--CCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 129 MWIVKPSGGSQ--GRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 129 ~wI~KP~~~s~--G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
..|+||..++. |+|++++++.+++....+..... . ..+ ....+.++||+||. |..|.+-+|+-
T Consensus 154 PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~-------g-~I~-~~~~~~~iIQEyI~------G~ey~~d~F~s 218 (366)
T PRK13277 154 PVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKA-------G-VID-REDLKNARIEEYVI------GAHFNFNYFYS 218 (366)
T ss_pred cEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhc-------C-ccc-ccccccceeEeccC------CCEEEEEEEEe
Confidence 68999999999 99999999999987765432100 0 000 11235789999998 77777766633
Q ss_pred -Eee-ecCCeEE---E-EcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCccchHHHHHHHHHccccchHH
Q psy16684 207 -VTS-FSPLTVW---I-ARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKWDIQNLRLFLTAMHGREIVD 279 (429)
Q Consensus 207 -vts-~~Pl~~y---~-y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~wsl~~l~~~l~~~~g~~~~~ 279 (429)
+.+ +..+.+- - --+|++|+.+..-...+. .|.| ..|. .+....+
T Consensus 219 ~l~g~ve~l~id~R~esn~dg~~r~pa~~ql~~~~---------------~p~~vv~G~--------------~p~t~rE 269 (366)
T PRK13277 219 PIRDRLELLGIDRRIQSNLDGFVRLPAPQQLKLNE---------------EPRYIEVGH--------------EPATIRE 269 (366)
T ss_pred ccCCcEEEEEEeeccccccccccccChhhhhhccc---------------CCceEEEcC--------------ccccchH
Confidence 111 0000000 0 013344432221000000 1112 1111 1112234
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeec
Q psy16684 280 ELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANA 329 (429)
Q Consensus 280 ~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~ 329 (429)
.+.+++.+++.+.+.++.+.+. +....-|.+|+++|+++++|++|||.
T Consensus 270 slle~v~e~ger~v~a~~~~~~--pg~iGpf~lQ~iv~~d~~~~V~EInp 317 (366)
T PRK13277 270 SLLEKVFEIGEKFVEATKELYP--PGIIGPFTLQTIVTPDLDFVVYDVAP 317 (366)
T ss_pred HHHHHHHHHHHHHHHHhhhhcC--cccccceEEEEEEcCCCcEEEEEEcC
Confidence 5667777777777777665443 23456677889999999999999975
No 50
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.18 E-value=4e-05 Score=80.24 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=84.2
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-..++||..++.|+|+.++++.+++....+.. .....++||+||. |+.+.+=+++.
T Consensus 181 GyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~-----------------~~~~~viVEe~I~------GrEitVev~vd 237 (493)
T PRK06524 181 GDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGI-----------------VGQPEIKVMKRIR------NVEVCIEACVT 237 (493)
T ss_pred CCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHh-----------------cCCCCEEEEeccC------cEEEEEEEEEe
Confidence 447899999999999999999999998876531 1124579999985 55555443322
Q ss_pred EeeecCCeEEEEcc--eEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHH
Q psy16684 207 VTSFSPLTVWIARD--GFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQK 284 (429)
Q Consensus 207 vts~~Pl~~y~y~~--g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~ 284 (429)
-.+ ........+ |..++. +|. .| |.- . ...+....+.+..+
T Consensus 238 ~dG--~Vv~~~~~e~vg~~Ei~--~yr------------------------~G--~~~----~---~i~PA~L~~ei~ee 280 (493)
T PRK06524 238 RHG--TVIGPAMTSLVGYPELT--PYR------------------------GG--WCG----N---DIWPGALPPAQTRK 280 (493)
T ss_pred CCC--CEEeccccccccceEEE--Ecc------------------------CC--eEE----E---EEccCCCCHHHHHH
Confidence 110 000000000 000111 010 00 000 0 00011122445567
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecC-CccEEEEEeecCCCCC
Q psy16684 285 IAKVVITALKSVECIMMGNKHCFELFGFDILLQD-NLNVCLLEANAAPSMK 334 (429)
Q Consensus 285 I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~-~~kpWLLEVN~~Psl~ 334 (429)
|++++.++..++.. -+|..++++||++|. ++++|++|||..|+=.
T Consensus 281 IqeiA~ka~~aL~~-----lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~ 326 (493)
T PRK06524 281 AREMVRKLGDVLSR-----EGYRGYFEVDLLHDLDADELYLGEVNPRLSGA 326 (493)
T ss_pred HHHHHHHHHHHhhc-----CCCEEEEEEEEEEECCCCeEEEEEEeCCcccc
Confidence 77777777766532 148899999999995 6899999999988763
No 51
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.14 E-value=9.8e-05 Score=78.03 Aligned_cols=154 Identities=23% Similarity=0.317 Sum_probs=84.8
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
.++..+.++. +-.+|+||..|+.|+||.++++.+++...++..... . . .......++||+||+.|
T Consensus 142 ~~~~~~~~~i----gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~----a-----~-~~~~~~~vlvEefI~~~- 206 (478)
T PRK08463 142 EEIKIFARKI----GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKRE----A-----L-AYFNNDEVFMEKYVVNP- 206 (478)
T ss_pred HHHHHHHHHh----CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHH----H-----H-HhcCCCcEEEEecCCCC-
Confidence 3445555443 347999999999999999999999987765421000 0 0 01134578999999753
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
+- +.+-|+..... ..+.++ -|-| ++|..++.. + +.
T Consensus 207 ----~~--iev~v~~d~~g-~v~~~~----er~~-------------------s~~~~~~~~-------i--------e~ 241 (478)
T PRK08463 207 ----RH--IEFQILGDNYG-NIIHLC----ERDC-------------------SIQRRHQKV-------I--------EI 241 (478)
T ss_pred ----eE--EEEEEEEcCCC-CEEEEe----ccCC-------------------ccccccCce-------E--------EE
Confidence 22 33323322211 111111 0111 111111100 0 00
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 273 HGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+. ...+.+.++|++.+.+++.++. .-....+||++|+++++|++|||+.++-+
T Consensus 242 ~P~~~l~~~~~~~i~~~a~~~~~alg--------~~g~~~vEf~~~~~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 242 APCPSISDNLRKTMGVTAVAAAKAVG--------YTNAGTIEFLLDDYNRFYFMEMNTRIQVE 296 (478)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcC--------CCCceeEEEEEcCCCCEEEEEEECCcCCC
Confidence 000 1124456677777777776652 11234689999998999999999988654
No 52
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.14 E-value=7.7e-05 Score=78.15 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=85.7
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-.+|+||..++.|+|+.++++.+++....+...... . .......++||+||+.|
T Consensus 142 ~e~~~~~~~i----g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~--------~--~~~~~~~vlvEe~i~g~- 206 (449)
T TIGR00514 142 EENVRIAKRI----GYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEA--------K--AAFGNDGVYIEKYIENP- 206 (449)
T ss_pred HHHHHHHHHh----CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHH--------H--HhCCCCCEEEEECCCCC-
Confidence 3444444443 3479999999999999999999999887664210000 0 01123579999999843
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCccchHHHHHHHHH
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~wsl~~l~~~l~~ 271 (429)
+ ++-+-++.... .-.+. +. .+.|+ ++..++.. +.+.
T Consensus 207 ----~--e~~v~v~~d~~-g~~~~-~~---~~~~~-------------------~~~~~~~~~~~~p------------- 243 (449)
T TIGR00514 207 ----R--HVEIQVLADKY-GNAIY-LG---ERDCS-------------------IQRRHQKLLEEAP------------- 243 (449)
T ss_pred ----e--EEEEEEEEcCC-CCEEE-Ee---ccccC-------------------ceecccceEEECC-------------
Confidence 2 23333333321 11111 10 00010 00000000 0000
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 272 MHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 272 ~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.....+.+.++|++++.+++.++ ++.....+||++|++++||+||||..|+-+
T Consensus 244 --~~~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~vef~~~~~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 244 --SPALTPELRRKMGDAAVKAAVSI--------GYRGAGTVEFLLDKNGEFYFMEMNTRIQVE 296 (449)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHC--------CCcceEEEEEEEeCCCCEEEEEEECCCCCC
Confidence 00112344566777766665554 245788899999989999999999988654
No 53
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.13 E-value=5e-05 Score=77.90 Aligned_cols=158 Identities=12% Similarity=0.174 Sum_probs=89.1
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+ .+++..+.++. +-.+|+||..++.|+|++++++.+++.+..+.... . . ......+
T Consensus 129 ~p~~~~~~s~~~l~~~~~~~----g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~----~-------~-~~~~~~~ 192 (395)
T PRK09288 129 TSPYRFADSLEELRAAVEEI----GYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQE----G-------G-RGGAGRV 192 (395)
T ss_pred CCCceEECCHHHHHHHHHhc----CCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHh----h-------c-cccCCCE
Confidence 3454444 34555555443 34799999999999999999999998876643110 0 0 0013579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
|||+||+. | ..+.+.++... + ...+.+. ...+ .|... ++ . ..|.
T Consensus 193 lvEefi~~-----~--~E~sv~~~~~~-~-~~~~~~~-------~~~~---------~~~~~--------~~-~-~~~~- 236 (395)
T PRK09288 193 IVEEFIDF-----D--YEITLLTVRAV-D-GGTHFCA-------PIGH---------RQEDG--------DY-R-ESWQ- 236 (395)
T ss_pred EEEEecCC-----C--EEEEEEEEEcC-C-CCEEEec-------Cccc---------EEECC--------EE-E-EEEC-
Confidence 99999971 2 23333333221 0 0111110 0000 00000 00 0 0010
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
+....+.+.+++++++.+++.++. ....+.+||+++++ .|+++|||..|+-+
T Consensus 237 -----------p~~l~~~~~~~i~~~~~~~~~~L~--------~~G~~~ve~~~~~~-~~~viEinpR~~~~ 288 (395)
T PRK09288 237 -----------PQPMSPAALEEAQEIAKKVTDALG--------GRGLFGVELFVKGD-EVYFSEVSPRPHDT 288 (395)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHcC--------CeeEEEEEEEEeCC-eEEEEEecCCCCCC
Confidence 111123445667777777777652 56789999999887 79999999998754
No 54
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.08 E-value=9.9e-05 Score=79.66 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=89.4
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+ +.++..+.+++ +-..|+||..++ .|+|+.++++.+++....+.. ......
T Consensus 136 tp~~~~v~~~~el~~~~~~i----g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~----------------~~~~~~ 195 (577)
T PLN02948 136 LPEFMEIDDLESAEKAGDLF----GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAAL----------------GGFERG 195 (577)
T ss_pred CCCeEEeCCHHHHHHHHHhc----CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHh----------------hCCCCc
Confidence 3454444 24454555443 347899999765 799999999999988776532 112347
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccc
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
++|++||+ |+-=+.|.+.... +|-+.+- +. ..+ .|--+ .....
T Consensus 196 vlvEefI~---------~~~EisV~v~r~~--------~G~i~~~--p~-~E~-----~~~~~------------~~~~~ 238 (577)
T PLN02948 196 LYAEKWAP---------FVKELAVMVARSR--------DGSTRCY--PV-VET-----IHKDN------------ICHVV 238 (577)
T ss_pred EEEEecCC---------CCeEEEEEEEECC--------CCCEEEe--cC-ccc-----EEECC------------eeEEE
Confidence 89999985 2222222222100 1101100 00 000 01000 00000
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
..+....+.+.+++++++.+++.++ .|...+.+||++++++++|++|||..|+.+.
T Consensus 239 ----------~~Pa~l~~~~~~~~~~~A~~~~~aL--------g~~Gv~~vEffv~~dG~v~v~EInpRpg~sG 294 (577)
T PLN02948 239 ----------EAPANVPWKVAKLATDVAEKAVGSL--------EGAGVFGVELFLLKDGQILLNEVAPRPHNSG 294 (577)
T ss_pred ----------EECCCCCHHHHHHHHHHHHHHHHHh--------CCCeEEEEEEEEcCCCcEEEEEEeCCCCCCC
Confidence 0111122445567777777777765 2788999999999999999999999998543
No 55
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.08 E-value=0.00015 Score=75.73 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=42.6
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~ 190 (429)
.+...+.+.. +-.+|+||..++.|+|+.++++.+++.+..+..... . .. ......++||+||+-
T Consensus 142 ~e~~~~~~~~----~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~----~-----~~-~~~~~~~lvEe~i~g 205 (450)
T PRK06111 142 EEAIAIARQI----GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKR----A-----AN-FFGNGEMYIEKYIED 205 (450)
T ss_pred HHHHHHHHHh----CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHH----H-----HH-hcCCCcEEEEcccCC
Confidence 3444455443 347999999999999999999999988766431000 0 00 012347999999984
No 56
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.08 E-value=4.3e-05 Score=84.66 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=47.1
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecC---chHHHHHhhccCCCcccccCCCCCCCcccCc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKK---LSEFEEWRENKDWSPKERKRSDDPNDIELIP 179 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
+|++..+. .+....+..+ .+-..|+||..++.|+||.++.+ .+++.+.++.. ....
T Consensus 503 vP~~~~~~~~e~a~~~~~~~---~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a----------------~~~~ 563 (752)
T PRK02471 503 VPAGDEFTSLEEALADYSLF---ADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIA----------------FRED 563 (752)
T ss_pred CCCEEEEcCHHHHHHHHHHh---cCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHH----------------HhcC
Confidence 46666553 2333333322 23468999999999999999865 44444433211 1123
Q ss_pred cceeeeecccCccccCCceeeeEEEEE
Q psy16684 180 EVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 180 ~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
..+|||+||+ | -|+|+.|+
T Consensus 564 ~~vlVEEfI~------G--~E~Rv~Vi 582 (752)
T PRK02471 564 SSVLVEEFIV------G--TEYRFFVL 582 (752)
T ss_pred CcEEEEeccc------C--CEEEEEEE
Confidence 5699999996 5 38898776
No 57
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.07 E-value=0.00011 Score=76.70 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcc
Q psy16684 279 DELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVI 355 (429)
Q Consensus 279 ~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv 355 (429)
+.+.++|++++..++.++...- .....++.++||+++++ ||+||+|..++=.........+...|++-++.++
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~~~---~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~ 317 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKDEN---NPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDFVETLHQIY 317 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHh
Confidence 4556677777778777775421 12457788999998665 9999999988744333333445566666555544
No 58
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.06 E-value=0.00016 Score=75.60 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=42.7
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~ 190 (429)
+++..+.+.. +-.+|+||..++.|+|+.++++.+++.+..+..... . .. ......++||+||+.
T Consensus 142 ~~~~~~~~~~----g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~----~-----~~-~~~~~~vlvEe~i~g 205 (451)
T PRK08591 142 EEALAIAKEI----GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAE----A-----KA-AFGNPGVYMEKYLEN 205 (451)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHH----H-----HH-hcCCCCEEEEeCCCC
Confidence 4555555543 347899999999999999999999988766431000 0 00 012346899999984
No 59
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.06 E-value=7.2e-05 Score=86.14 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=92.9
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. +|...+.++. +-.+|+||+.++.|+|+.++.+.+++..+++.... .....++
T Consensus 684 ~P~~~~v~s~ee~~~~~~~i----gyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~--------------~s~~~~v 745 (1050)
T TIGR01369 684 QPKWKTATSVEEAVEFASEI----GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVE--------------VSPEHPV 745 (1050)
T ss_pred CCCeEEECCHHHHHHHHHhc----CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHH--------------hCCCCCE
Confidence 57777663 4555555443 34799999999999999999999999887753210 1234579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+. |+-+++.+++ .. -.++++ +.. +.+ ....+|.-. ....+
T Consensus 746 lVeefI~~-----G~E~~Vd~l~--d~---g~v~i~--~i~----e~~-----~~~gv~sGd-----------s~~~~-- 791 (1050)
T TIGR01369 746 LIDKYLED-----AVEVDVDAVS--DG---EEVLIP--GIM----EHI-----EEAGVHSGD-----------STCVL-- 791 (1050)
T ss_pred EEeecCCC-----CeEEEEEEEE--eC---CEEEEE--EEE----Eee-----cccCCcCCC-----------ceEEe--
Confidence 99999985 6777776543 22 122211 000 000 001122100 00000
Q ss_pred HHHHHHHHHcccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 263 QNLRLFLTAMHGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 263 ~~l~~~l~~~~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
+. ...+.+.++|.+++.+.+.++ ++-..+.+||++|+ ++||+||||..++-
T Consensus 792 -----------P~~~l~~~~~~~i~~~a~ki~~aL--------gi~G~~~vqf~~~~-~~~yvIEvNpR~s~ 843 (1050)
T TIGR01369 792 -----------PPQTLSAEIVDRIKDIVRKIAKEL--------NVKGLMNIQFAVKD-GEVYVIEVNPRASR 843 (1050)
T ss_pred -----------cCCCCCHHHHHHHHHHHHHHHHHC--------CCcceEEEEEEEEC-CeEEEEEEeCCCCc
Confidence 10 112334456666666655554 13467889999985 68999999999874
No 60
>PRK08462 biotin carboxylase; Validated
Probab=98.06 E-value=0.00013 Score=76.17 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~ 190 (429)
.+...+.+++ +-.+|+||..++.|+|+.++++.+++......... +... ......++||+||+.
T Consensus 144 ~~~~~~~~~~----g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~---------~~~~-~~~~~~vlvEe~i~g 207 (445)
T PRK08462 144 EEAKKIAKEI----GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAES---------EALS-AFGDGTMYMEKFINN 207 (445)
T ss_pred HHHHHHHHHc----CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHH---------HHHh-ccCCCcEEEeccCCC
Confidence 4455555543 45799999999999999999999998876532100 0000 112346899999985
No 61
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.05 E-value=0.00011 Score=84.92 Aligned_cols=157 Identities=15% Similarity=0.174 Sum_probs=90.4
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. .|...+.++. +-.+|+||+.++.|+|+.++.+.+++..+++.... .....++
T Consensus 684 ~P~~~~~~s~ee~~~~~~~i----gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~--------------~s~~~~v 745 (1066)
T PRK05294 684 QPPNGTATSVEEALEVAEEI----GYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVK--------------VSPDHPV 745 (1066)
T ss_pred CCCeEEECCHHHHHHHHHhc----CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHh--------------hCCCCcE
Confidence 57777663 4555555443 34799999999999999999999999887653210 1234579
Q ss_pred eeeecccCccccCCc-eeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccc
Q psy16684 183 VAQKYITNPYLLEGR-KFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 183 IvQkYI~~PlLi~Gr-KFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
|||+||+ |. -+++.+. ..+ -.+.+.. ..-++.. ..+|. ++....
T Consensus 746 lIEefI~------G~~E~sV~~v--~dg---~~v~i~~-i~e~i~~----------~gv~~-------------Gds~~~ 790 (1066)
T PRK05294 746 LIDKFLE------GAIEVDVDAI--CDG---EDVLIGG-IMEHIEE----------AGVHS-------------GDSACS 790 (1066)
T ss_pred EEEecCC------CCEEEEEEEE--ecC---CeEEEee-eEEeeee----------ccccC-------------CCCcEE
Confidence 9999998 44 6666653 222 1111100 0000000 00110 000000
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
+ -.....+...++|++++.+.+.++ ++...+.+||+++ +++||+||||..|+-
T Consensus 791 ~----------p~~~l~~~~~~~i~~~a~~i~~aL--------g~~G~~~vqf~~~-~~~~yViEiNpR~s~ 843 (1066)
T PRK05294 791 L----------PPQTLSEEIIEEIREYTKKLALEL--------NVVGLMNVQFAVK-DDEVYVIEVNPRASR 843 (1066)
T ss_pred e----------cCCCCCHHHHHHHHHHHHHHHHHc--------CCeeeEEEEEEEE-CCeEEEEEEecCCCc
Confidence 0 000112334455666666555544 2457889999998 468999999999873
No 62
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.01 E-value=0.00015 Score=83.51 Aligned_cols=154 Identities=15% Similarity=0.201 Sum_probs=88.9
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
.+...+.++. +-.+|+||..|+.|+|++++++.+++...++.... +. .. ......++||+||+.|
T Consensus 142 eea~~~ae~i----GyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~--------ea-~~-~fg~~~vlIEefI~g~- 206 (1143)
T TIGR01235 142 EEVLDFAAAI----GYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKS--------EA-KA-AFGNDEVYVEKLIERP- 206 (1143)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHH--------HH-HH-hcCCCcEEEEEcCCCC-
Confidence 4455555543 34799999999999999999999998776542100 00 00 1124579999999864
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
-++.+-++..... -.+.++ -|-|+.. ..+... + +.
T Consensus 207 ------reIeVqVlgD~~G-~vv~l~----eRdcsvq-------------------rr~qk~-------i--------e~ 241 (1143)
T TIGR01235 207 ------RHIEVQLLGDKHG-NVVHLF----ERDCSVQ-------------------RRHQKV-------V--------EV 241 (1143)
T ss_pred ------eEEEEEEEEeCCC-CEEEEE----ecccccc-------------------ccCceE-------E--------EE
Confidence 2566666655321 112221 1222211 000000 0 00
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 273 HGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+. ...+.+.++|.+++.+.+.++ +.-....+||++|+++++|+||||..|.-+
T Consensus 242 aPa~~L~~e~r~~I~~~A~kla~aL--------gy~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 242 APAPYLSREVRDEIAEYAVKLAKAV--------NYINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 000 112344556776666665544 123356799999999999999999999754
No 63
>PRK05586 biotin carboxylase; Validated
Probab=98.00 E-value=9.6e-05 Score=77.39 Aligned_cols=155 Identities=20% Similarity=0.283 Sum_probs=85.3
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
.|+..+.+++ +-..|+||..++.|+|+.++++.+++.+..+.... .. . . ......++||+||+.|
T Consensus 142 ~e~~~~~~~i----gyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~----~~----~-~-~~~~~~vivEe~i~g~- 206 (447)
T PRK05586 142 EEALEIAKEI----GYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKS----EA----K-A-AFGDDSMYIEKFIENP- 206 (447)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHH----HH----H-H-hcCCCeEEEEecCCCC-
Confidence 4455555543 34799999999999999999999998776542100 00 0 0 0123579999999842
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
+ ++.+-|+..... .+..+ | -+-|+ ++.++........
T Consensus 207 ----~--ei~v~v~~d~~G--~~~~~--~-~~~~~-------------------~~~~~~~~~~~~p------------- 243 (447)
T PRK05586 207 ----K--HIEFQILGDNYG--NVVHL--G-ERDCS-------------------LQRRNQKVLEEAP------------- 243 (447)
T ss_pred ----e--EEEEEEEECCCC--CEEEE--e-ceecc-------------------eEecccceEEEcC-------------
Confidence 2 344444443211 11111 0 01010 0100000000000
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 273 HGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.....+.+.++|.+++.+++.++. +-....+||++|+++++|++|||..|+-+
T Consensus 244 -~~~l~~~~~~~l~~~a~~i~~aLg--------~~g~~~vEf~~~~~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 244 -SPVMTEELRKKMGEIAVKAAKAVN--------YKNAGTIEFLLDKDGNFYFMEMNTRIQVE 296 (447)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHcC--------CcceeEEEEEEcCCCCEEEEEEECCCCCC
Confidence 001123445567777666666552 23356799999999999999999998654
No 64
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=97.99 E-value=4.8e-05 Score=72.19 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 282 FQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 282 ~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+.+.+.+++++..+ .+|+..+|+|+.+. ..||+||||..|.-.
T Consensus 216 k~~~~~~Ai~aVeci-------~Gl~GYVGVDlVls--D~pYvIEINpR~TTp 259 (307)
T COG1821 216 KREAFEEAIRAVECI-------PGLNGYVGVDLVLS--DEPYVIEINPRPTTP 259 (307)
T ss_pred HHHHHHHHHHHHHhh-------ccccceeeEEEEec--CCcEEEEecCCCCcc
Confidence 334444444444443 46999999999998 579999999988654
No 65
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=97.97 E-value=0.00024 Score=74.87 Aligned_cols=154 Identities=10% Similarity=0.137 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-.+|+||..++.|+|+.++++.+++...+...... . .. ......++||+||+.
T Consensus 145 ~e~~~~~~~i----gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~--------~-~~-~~~~~~vlvEefi~~-- 208 (467)
T PRK12833 145 DAALEVAARI----GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQRE--------A-QA-AFGDGGVYLERFIAR-- 208 (467)
T ss_pred HHHHHHHHHh----CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHH--------H-HH-hcCCCcEEEEecCCC--
Confidence 4455555443 457999999999999999999999988765321000 0 00 112456899999985
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
|+ ++-+-++....+ .+.+ +.|-|+.. ..+.....+..
T Consensus 209 ---~~--ei~v~v~~dg~~--~~~~----~~~~~~~~-------------------r~~~ki~e~~p------------- 245 (467)
T PRK12833 209 ---AR--HIEVQILGDGER--VVHL----FERECSLQ-------------------RRRQKILEEAP------------- 245 (467)
T ss_pred ---CE--EEEEEEEeCCCc--EEEE----EEeecccc-------------------cCCccEEEECC-------------
Confidence 33 333333433211 1111 12222211 00000000000
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEec-CCccEEEEEeecCCCCC
Q psy16684 273 HGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQ-DNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD-~~~kpWLLEVN~~Psl~ 334 (429)
.....+.+.++|.+.+.+.+.++ ++-....+||++| +++++||||||..+.-+
T Consensus 246 -~~~l~~~~~~~l~~~a~~~~~al--------g~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~ 299 (467)
T PRK12833 246 -SPSLTPAQRDALCASAVRLARQV--------GYRGAGTLEYLFDDARGEFYFIEMNTRIQVE 299 (467)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHc--------CCcCcceEEEEEecCCCCEEEEEEECCCCcc
Confidence 00112334556666666666554 1335567899998 47899999999988654
No 66
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=97.93 E-value=0.00038 Score=73.43 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=85.0
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
.+...+.++. +-.+|+||..++.|+|+.++++.+++....+..... ... ......+++|+||+.|
T Consensus 141 ~e~~~~~~~i----gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~---------~~~-~~~~~~v~iE~~i~~~- 205 (472)
T PRK07178 141 DEALAEAERI----GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISE---------ATK-AFGSAEVFLEKCIVNP- 205 (472)
T ss_pred HHHHHHHHHc----CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHH---------HHH-hcCCCCEEEEEcCCCC-
Confidence 3444444443 457999999999999999999999987765321000 000 1123468999999753
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCccchHHHHHHHHH
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~wsl~~l~~~l~~ 271 (429)
+ ++.+-|+.... .-.+.++ -|-|+ +|..++.. +..
T Consensus 206 ----~--eiev~v~~d~~-G~~v~~~----er~~s-------------------~~~~~~~~~e~~-------------- 241 (472)
T PRK07178 206 ----K--HIEVQILADSH-GNVVHLF----ERDCS-------------------IQRRNQKLIEIA-------------- 241 (472)
T ss_pred ----e--EEEEEEEEECC-CCEEEEE----ccccc-------------------eEecCcceEEEC--------------
Confidence 3 24444443321 1111111 11111 11111110 000
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 272 MHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 272 ~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
......+.+.++|++.+.+.+.++. .-....+||++|.++++|++|||..+.-+
T Consensus 242 -P~~~l~~~~~~~i~~~a~~~~~aLg--------~~g~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 242 -PSPQLTPEQRAYIGDLAVRAAKAVG--------YENAGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHcC--------CCceeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 0001123456677777777666652 22245689999989999999999998654
No 67
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=97.90 E-value=0.00041 Score=73.71 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=43.7
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~ 190 (429)
.+...+.++. +-.+|+||..|+.|+||.++++.+++.+.++.... .. . .......++||+||+.
T Consensus 142 ~e~~~~a~~i----gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~----~a----~--~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 142 EEAKEIAEEI----GYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQS----IA----Q--SAFGDSTVFIEKYLEK 205 (499)
T ss_pred HHHHHHHHHh----CCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHH----HH----H--HhCCCCeEEEEeCCCC
Confidence 4555555554 34799999999999999999999998776643100 00 0 0112357999999985
No 68
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.88 E-value=0.00041 Score=80.22 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=86.4
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
+++..+.++. +-.+|+||..|+.|+|++++++.+++...++.... +... ......++||+||+.|
T Consensus 146 eea~~~a~~i----GyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~---------ea~~-~fg~~~vlVEefI~g~- 210 (1146)
T PRK12999 146 EEALEFAEEI----GYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKR---------EAKA-AFGNDEVYLEKYVENP- 210 (1146)
T ss_pred HHHHHHHHHh----CCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHH---------HHHh-hcCCCcEEEecCCCCC-
Confidence 4455555543 34799999999999999999999998776543100 0000 1124579999999853
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCCCccchHHHHHHHHH
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g~~wsl~~l~~~l~~ 271 (429)
+ ++.+-++..... -.+.++ -|-|+ +|..+... +...
T Consensus 211 ----~--~ieVqvl~D~~G-~vv~l~----erdcs-------------------vqrr~qk~ie~aP------------- 247 (1146)
T PRK12999 211 ----R--HIEVQILGDKHG-NVVHLY----ERDCS-------------------VQRRHQKVVEIAP------------- 247 (1146)
T ss_pred ----e--EEEEEEEEECCC-CEEEEE----ccccc-------------------eeecCccEEEEcC-------------
Confidence 2 245544544311 111111 11121 11111110 0000
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 272 MHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 272 ~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.....+.+.++|.+.+.+.+.++. .-....+||++|.+++||+||||..++-.
T Consensus 248 --~~~L~~~~~~~l~~~A~kl~~alg--------y~G~gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 248 --APGLSEELRERICEAAVKLARAVG--------YVNAGTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHcC--------CCceEEEEEEEECCCCEEEEEEECCCCCc
Confidence 001123345667777666666541 11244699999999999999999888643
No 69
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.85 E-value=0.00035 Score=80.69 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=53.1
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. +|+..+.++. +-.+|+||+.+..|+|+.++.+.+++.++++.. .....++
T Consensus 685 ~P~~~~~~s~ee~~~~~~~i----gyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~----------------~s~~~~v 744 (1068)
T PRK12815 685 HVPGLTATDEEEAFAFAKRI----GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN----------------ASQLYPI 744 (1068)
T ss_pred CCCeEEeCCHHHHHHHHHhc----CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh----------------hcCCCCE
Confidence 56666653 4555555443 457999999999999999999999998877532 1134679
Q ss_pred eeeecccCccccCCceeeeEE
Q psy16684 183 VAQKYITNPYLLEGRKFDMRM 203 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRv 203 (429)
+||+||+ |+.+++-+
T Consensus 745 lIeefI~------G~E~~Vd~ 759 (1068)
T PRK12815 745 LIDQFID------GKEYEVDA 759 (1068)
T ss_pred EEEEeec------CceEEEEE
Confidence 9999996 66666554
No 70
>PLN02735 carbamoyl-phosphate synthase
Probab=97.77 E-value=0.00032 Score=81.02 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-..|+||+.++.|+|+.++++.+++...++.... .....+++||+||+.
T Consensus 727 eea~~~a~~i----GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~--------------~~~~~~vlVEefI~~-- 786 (1102)
T PLN02735 727 ADALAIAKRI----GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVE--------------VDPERPVLVDKYLSD-- 786 (1102)
T ss_pred HHHHHHHHhc----CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHH--------------hcCCCCEEEEEecCC--
Confidence 3444444433 44789999999999999999999999877653210 112346999999974
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
|+-+++=+. ... +|-+.+..- ...+.+..+|..- ..+.+.
T Consensus 787 ---g~Ei~V~vl--~D~----------~G~vv~~~i---~e~~~~~gvhsGd-----------s~~~~P----------- 826 (1102)
T PLN02735 787 ---ATEIDVDAL--ADS----------EGNVVIGGI---MEHIEQAGVHSGD-----------SACSLP----------- 826 (1102)
T ss_pred ---cEEEEEEEE--ECC----------CCCEEEecc---eEeeeccCccCCC-----------ccEEec-----------
Confidence 455555332 211 111111100 0000011112100 001110
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 273 HGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 273 ~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
.....+.+.++|+++..+...++ ++..++.+||++|.++++|+||||..|+.
T Consensus 827 -~~~L~~e~~~~i~~~a~ki~~~L--------~~~G~~~vqf~v~~dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 827 -TQTIPSSCLATIRDWTTKLAKRL--------NVCGLMNCQYAITPSGEVYIIEANPRASR 878 (1102)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHc--------CCcceeeEEEEEcCCCcEEEEEEeCCCCc
Confidence 00112344556666666544433 36688899999999999999999999984
No 71
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=97.74 E-value=0.0023 Score=59.43 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=88.4
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
+++...|++++. ...+++||.+.+.|+|+.++.+.++..+.+++... .. .-.......||++|++
T Consensus 26 ~~~A~~~l~~~~---~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~---------~~-~fg~~~~~vvIEE~l~-- 90 (194)
T PF01071_consen 26 YEEALEYLEEQG---YPYVVIKADGLAAGKGVVIADDREEALEALREIFV---------DR-KFGDAGSKVVIEEFLE-- 90 (194)
T ss_dssp HHHHHHHHHHHS---SSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHT---------SS-TTCCCGSSEEEEE-----
T ss_pred HHHHHHHHHhcC---CCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhcc---------cc-ccCCCCCcEEEEeccC--
Confidence 677888888775 22468999999999999999998877666543210 00 0012356889999998
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
|.. +-+.+++.+.+ + ..-..+..|- ++-.- ...|+ .|.+=++..
T Consensus 91 ----G~E--~S~~a~~dG~~---~------~~lp~aqD~K---------r~~dg---d~Gpn--TGGMGa~sp------- 134 (194)
T PF01071_consen 91 ----GEE--VSLFALTDGKN---F------VPLPPAQDHK---------RLFDG---DTGPN--TGGMGAYSP------- 134 (194)
T ss_dssp ----SEE--EEEEEEEESSE---E------EEEEEBEEEE---------EEETT---TEEEE--ESESEEEES-------
T ss_pred ----CeE--EEEEEEEcCCe---E------EECcchhccc---------cccCC---CCCCC--CCCccceee-------
Confidence 443 44444554411 0 0001111110 00000 00000 122211110
Q ss_pred ccccchHHHHHHHHHH-HHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCC
Q psy16684 272 MHGREIVDELFQKIAK-VVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPS 332 (429)
Q Consensus 272 ~~g~~~~~~l~~~I~~-ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Ps 332 (429)
.+...+.+.++|.+ |+..++.++++. .-....++.+++|++++| |++||.|+..+
T Consensus 135 --~p~~~~~~~~~i~~~I~~pt~~~l~~e---g~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 135 --VPFITDELLEEIIEEILEPTLKGLKKE---GIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp --TTTS-HHHHHHHHHHTHHHHHHHHHHT---T---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHhc---CCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 01113445555554 667777776553 134788999999999888 99999998654
No 72
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=97.69 E-value=0.0012 Score=66.34 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred cccceeecchhHHHHHHHHhc--CCCceEEEcCCCCCCCCCEEEec-CchHHHHHhhccCCC-cccccCCCCCCCcccCc
Q psy16684 104 AMPMTFEIPSETALFLQEARR--DSHNMWIVKPSGGSQGRGILLFK-KLSEFEEWRENKDWS-PKERKRSDDPNDIELIP 179 (429)
Q Consensus 104 f~P~T~~Lp~e~~~f~~~~~~--~~~~~wI~KP~~~s~G~GI~l~~-~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 179 (429)
-.|+++.. .....|.+.+.+ .++...++||..|..|+|.++++ +.+++..+....... ..+....-.+ .....
T Consensus 121 pvp~~~~v-~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~--~~~~~ 197 (329)
T PF15632_consen 121 PVPPYWRV-RTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQ--RSEEF 197 (329)
T ss_pred CCCCEEEe-CCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHh--ccCCC
Confidence 36776665 334555444443 45668999999999999999998 566665554311000 0000000000 01246
Q ss_pred cceeeeecccCc
Q psy16684 180 EVYVAQKYITNP 191 (429)
Q Consensus 180 ~~~IvQkYI~~P 191 (429)
.++||++|++-|
T Consensus 198 ~~llvMeyL~G~ 209 (329)
T PF15632_consen 198 PPLLVMEYLPGP 209 (329)
T ss_pred CCcEEecCCCCC
Confidence 789999999843
No 73
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.64 E-value=0.00078 Score=77.89 Aligned_cols=67 Identities=18% Similarity=0.002 Sum_probs=47.1
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. .|+..+.++. +-..|+||..+..|+|+.++++.+++....+.... ......+
T Consensus 143 vp~~~~v~s~~e~~~~~~~i----g~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~--------------~s~~~~v 204 (1066)
T PRK05294 143 VPRSGIAHSMEEALEVAEEI----GYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLD--------------LSPVTEV 204 (1066)
T ss_pred CCCeeeeCCHHHHHHHHHHc----CCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHh--------------hCCCCeE
Confidence 46666663 4555555543 34789999999999999999999998776542100 1123579
Q ss_pred eeeeccc
Q psy16684 183 VAQKYIT 189 (429)
Q Consensus 183 IvQkYI~ 189 (429)
|||+||+
T Consensus 205 lvEe~I~ 211 (1066)
T PRK05294 205 LIEESLL 211 (1066)
T ss_pred EEEEccc
Confidence 9999997
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.62 E-value=0.0028 Score=67.17 Aligned_cols=73 Identities=5% Similarity=-0.045 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEec-CCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcc
Q psy16684 280 ELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQ-DNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVI 355 (429)
Q Consensus 280 ~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD-~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv 355 (429)
.+.+++.+++..++.++..... -.....+-.+||++ +++ |||||+|+.++=.....+...+...|++-++.++
T Consensus 261 ~~~~~~~~~v~~~l~al~~~~g--~~~~G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~ 334 (486)
T PRK05784 261 EEYEEAVEIVKRTIDAIYKETG--ERYVGVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAA 334 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHH
Confidence 4445566777777777765321 11246788899998 655 9999999988832222334445555555555544
No 75
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.57 E-value=0.0013 Score=75.87 Aligned_cols=68 Identities=18% Similarity=0.050 Sum_probs=45.9
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+. ++...+.++. +-..|+||..+..|+|+.++++.+++......... ......+
T Consensus 142 vp~~~~v~s~~e~~~~~~~i----gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~--------------~s~~~~v 203 (1050)
T TIGR01369 142 VPESEIAHSVEEALAAAKEI----GYPVIVRPAFTLGGTGGGIAYNREELKEIAERALS--------------ASPINQV 203 (1050)
T ss_pred CCCeeecCCHHHHHHHHHHh----CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHh--------------cCCCCcE
Confidence 45555553 3444444443 34789999999999999999999998876543210 1122579
Q ss_pred eeeecccC
Q psy16684 183 VAQKYITN 190 (429)
Q Consensus 183 IvQkYI~~ 190 (429)
+||+||.-
T Consensus 204 lVEe~I~G 211 (1050)
T TIGR01369 204 LVEKSLAG 211 (1050)
T ss_pred EEEEcccC
Confidence 99999983
No 76
>PLN02735 carbamoyl-phosphate synthase
Probab=97.51 E-value=0.0016 Score=75.36 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=89.2
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. ++...+.++.. .-..|+||+.++.|+|+.++++.+++....+.... ......+
T Consensus 159 vp~~~~v~s~eea~~~~~~iG---~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~--------------~s~~~~V 221 (1102)
T PLN02735 159 TPPSGIATTLDECFEIAEDIG---EFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLA--------------ASITSQV 221 (1102)
T ss_pred CCCeeEeCCHHHHHHHHHHhC---CCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHh--------------cCCCCeE
Confidence 35555553 34444444431 13689999999999999999999999877653210 1234578
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||.- .+-+.+=++ ..... ..+-+|... +++...+| .|.....
T Consensus 222 LVEe~I~G-----~kE~ev~Vl--~D~~g---------~~i~v~~ie----~~dp~gvh--------------~G~s~~v 267 (1102)
T PLN02735 222 LVEKSLLG-----WKEYELEVM--RDLAD---------NVVIICSIE----NIDPMGVH--------------TGDSITV 267 (1102)
T ss_pred EEEEecCC-----CeEEEEEEE--EcCCC---------CEEEEeeEE----EEcCCccc--------------cCCEEEE
Confidence 99999982 134443332 22111 111111110 01111122 1110000
Q ss_pred HHHHHHHHHcccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcc-eEEEEEEEEec-CCccEEEEEeecCCCC
Q psy16684 263 QNLRLFLTAMHGR-EIVDELFQKIAKVVITALKSVECIMMGNKHC-FELFGFDILLQ-DNLNVCLLEANAAPSM 333 (429)
Q Consensus 263 ~~l~~~l~~~~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~-Fel~G~D~liD-~~~kpWLLEVN~~Psl 333 (429)
.+. ...+...++|++.+.+++.++ ++ .....+||++| +++++|+||||..++-
T Consensus 268 ----------aPa~tL~~~~~q~l~~~A~ki~~aL--------gi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ 323 (1102)
T PLN02735 268 ----------APAQTLTDKEYQRLRDYSVAIIREI--------GVECGGSNVQFAVNPVDGEVMIIEMNPRVSR 323 (1102)
T ss_pred ----------EeCCCCCHHHHHHHHHHHHHHHHHh--------CCCcCceEEEEEEECCCCcEEEEEecCCCCC
Confidence 011 112345567777777777665 23 46689999999 5899999999966663
No 77
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.45 E-value=0.0029 Score=73.72 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=45.0
Q ss_pred cceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCcccee
Q psy16684 106 PMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYV 183 (429)
Q Consensus 106 P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 183 (429)
|.+..+. +|...+.++. +-.+|+||..++.|+|+.++++.+++....+..... . ........++
T Consensus 131 p~~~lv~s~dea~~~a~~i----gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~----~------~~~f~~~~vl 196 (1201)
T TIGR02712 131 PGTGLLSSLDEALEAAKEI----GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRL----G------ESFFGDAGVF 196 (1201)
T ss_pred CceeecCCHHHHHHHHHhc----CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHH----H------HHhcCCCcEE
Confidence 4444442 4444444443 458999999999999999999999987655421000 0 0011234589
Q ss_pred eeecccC
Q psy16684 184 AQKYITN 190 (429)
Q Consensus 184 vQkYI~~ 190 (429)
||+||+.
T Consensus 197 VEefI~g 203 (1201)
T TIGR02712 197 LERFVEN 203 (1201)
T ss_pred EEecCCC
Confidence 9999984
No 78
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.39 E-value=0.0015 Score=68.06 Aligned_cols=54 Identities=24% Similarity=0.301 Sum_probs=39.6
Q ss_pred ceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 128 NMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 128 ~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
-..|+||+.|+.|+|++++++.+++.+........ .........+++++||++|
T Consensus 153 yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~e----------a~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGE----------AEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHH----------HHHhcCCCcEEeeeeccCC
Confidence 58999999999999999999999887765432100 0002234559999999987
No 79
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.33 E-value=0.0022 Score=74.15 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=46.7
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. +|...+.++. +-..|+||..+..|+|+.++++.+++.+..+.... ......+
T Consensus 143 vp~~~~v~s~ee~~~~~~~i----gyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~--------------~s~~~~v 204 (1068)
T PRK12815 143 VPESEIVTSVEEALAFAEKI----GFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQ--------------ASPIHQC 204 (1068)
T ss_pred CCCceeeCCHHHHHHHHHHc----CCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHh--------------cCCCCeE
Confidence 46666663 4444554443 34789999999999999999999998876643110 1123579
Q ss_pred eeeeccc
Q psy16684 183 VAQKYIT 189 (429)
Q Consensus 183 IvQkYI~ 189 (429)
+||+||+
T Consensus 205 LVEe~I~ 211 (1068)
T PRK12815 205 LLEESIA 211 (1068)
T ss_pred EEEEccC
Confidence 9999997
No 80
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=97.28 E-value=0.028 Score=51.35 Aligned_cols=139 Identities=15% Similarity=0.239 Sum_probs=88.6
Q ss_pred chhHHHHHHHHhcCCCceEEEc-CCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC
Q psy16684 112 PSETALFLQEARRDSHNMWIVK-PSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~K-P~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~ 190 (429)
++|+...++++ +-..|+| +..|.-|+|-+++++.+++.+.... ....++|++++|+
T Consensus 17 ~~~l~~a~~~i----G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~------------------~~~~~~ilE~~v~- 73 (172)
T PF02222_consen 17 LEDLEEAAESI----GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQE------------------LGGGPCILEEFVP- 73 (172)
T ss_dssp HHHHHHHHHHH----TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHH------------------TTTSCEEEEE----
T ss_pred HHHHHHHHHHc----CCCEEEEccCcCcCCCccEEECCHHHHHHHHHh------------------cCCCcEEEEeccC-
Confidence 46777777776 3478999 6778899999999999999887753 2467899999997
Q ss_pred ccccCCceeeeEEEEEEeeec-------CCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchH
Q psy16684 191 PYLLEGRKFDMRMYVLVTSFS-------PLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQ 263 (429)
Q Consensus 191 PlLi~GrKFDlRvyvLvts~~-------Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~ 263 (429)
|+--+=|++..-. |..--.+++|..+.+..+
T Consensus 74 --------f~~EiSvivaR~~~G~~~~yp~~en~~~~~il~~s~~P---------------------------------- 111 (172)
T PF02222_consen 74 --------FDREISVIVARDQDGEIRFYPPVENVHRDGILHESIAP---------------------------------- 111 (172)
T ss_dssp --------ESEEEEEEEEEETTSEEEEEEEEEEEEETTEEEEEEES----------------------------------
T ss_pred --------CcEEEEEEEEEcCCCCEEEEcCceEEEECCEEEEEECC----------------------------------
Confidence 4444444433211 111223334444333222
Q ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCcc-EEEEEeecCCCCC
Q psy16684 264 NLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLN-VCLLEANAAPSMK 334 (429)
Q Consensus 264 ~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~k-pWLLEVN~~Psl~ 334 (429)
....+.+..+++++..+.+.++ ....+|++.|.++++|+ .|+-|+-..|.-+
T Consensus 112 -----------a~i~~~~~~~a~~ia~~i~~~l--------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 112 -----------ARISDEVEEEAKEIARKIAEAL--------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp -----------CSS-HHHHHHHHHHHHHHHHHH--------TSSEEEEEEEEEETTSTEEEEEEEESS--GG
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHc--------CcEEEEEEEEEEecCCCEEEEEeccCCccCc
Confidence 1123345556676666666655 25789999999999998 9999998888644
No 81
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=96.88 E-value=0.02 Score=53.98 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=93.2
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
+++...|.++. +-..++||+.+..|+|+.++.+.+++.+..+...... . ......++++.+||++|
T Consensus 27 ~eea~~~a~~i----GyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s---------~-~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 27 VEEALEFAEEI----GYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRES---------P-AAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp HHHHHHHHHHH-----SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHH---------H-HHHSTS-EEEEE--SSE
T ss_pred HHHHHHHHHhc----CCceEEeecccccccccccccchhhhhhhhhhccccC---------c-cccccceEEEeeehhhh
Confidence 46777777765 3479999999999999999999999987765321000 0 01235689999999974
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
|..+ +=|+..+. +..++ ...|=|..+ .| +.+- +.
T Consensus 93 -----reiE--vqvi~D~~---gn~~~--~~~~e~~~~----------~h---------s~ds-------i~-------- 126 (211)
T PF02786_consen 93 -----REIE--VQVIRDGK---GNVVH--LGERECSEQ----------RH---------SQDS-------IE-------- 126 (211)
T ss_dssp -----EEEE--EEEEEETT---SEEEE--EEEEEEEEE----------ET---------TEEE-------EE--------
T ss_pred -----hhhh--hhhhhccc---cceee--eeeeccccc----------cc---------cccc-------ee--------
Confidence 2222 22333321 11111 112222221 01 1000 00
Q ss_pred cccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecC-CccEEEEEeecCCCCCCCChhhHH-HHHHHH
Q psy16684 272 MHGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQD-NLNVCLLEANAAPSMKATDDHDYK-LKYNLI 348 (429)
Q Consensus 272 ~~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~-~~kpWLLEVN~~Psl~~~~~~d~~-lk~~li 348 (429)
..+. ...+.++++|.+...+....+ +.-...-+-|++|. +++.|+||||..-+ .+.+.... .-..|+
T Consensus 127 ~~P~~~L~~~~~~~l~~~a~~ia~~l--------~~~G~~tvef~~~~~~~~~y~lEvNpR~~--~~~p~~e~~tg~dlv 196 (211)
T PF02786_consen 127 EAPAQTLSDEERQKLREAAKKIARAL--------GYVGAGTVEFAVDPDDGEFYFLEVNPRLQ--REHPVTEKVTGYDLV 196 (211)
T ss_dssp EES-SSS-HHHHHHHHHHHHHHHHHT--------T-EEEEEEEEEEETTTTEEEEEEEESS----TTHHHHHHHHT--HH
T ss_pred EeeccccchHHHHHHHHHHHHHHHhh--------CeeecceEEEEEccCccceeeecccCCCC--CcchHHHHHHCCCHH
Confidence 0011 122445666666666555544 35577888999997 99999999997544 44443333 334566
Q ss_pred HHHHhcc
Q psy16684 349 QDALNVI 355 (429)
Q Consensus 349 ~d~l~lv 355 (429)
.-.++++
T Consensus 197 ~~~~~ia 203 (211)
T PF02786_consen 197 RVQIRIA 203 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 82
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=96.85 E-value=0.045 Score=50.49 Aligned_cols=189 Identities=14% Similarity=0.246 Sum_probs=100.2
Q ss_pred ccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCch
Q psy16684 71 YEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLS 150 (429)
Q Consensus 71 ~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~ 150 (429)
+.++.|--++..|.+.++.+..+ .++.++.||. |.-- +....+.-..++|-...+.|-|=..+++..
T Consensus 7 ynf~dKpWvF~qLi~i~~~lG~e-------~FPLieQt~y-pnh~-----em~s~~~fPvVvKvG~~h~G~GKvkv~n~~ 73 (203)
T PF02750_consen 7 YNFCDKPWVFAQLIKIQKRLGPE-------KFPLIEQTYY-PNHR-----EMLSAPRFPVVVKVGHAHAGMGKVKVDNQQ 73 (203)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHTT-------TS-B---EEE-SSGG-----GGCS-SSSSEEEEESS-STTTTEEEE-SHH
T ss_pred hhhcCCcHHHHHHHHHHHHhCCc-------ccccceeeec-CChh-----hhccCCCCCEEEEEccccCceeEEEEccHH
Confidence 34567877888888888887654 4677788877 4211 222345568899999999999999999877
Q ss_pred HHHHHhhccCCCcccccCCCCCCCcccCcccee-eeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcC
Q psy16684 151 EFEEWRENKDWSPKERKRSDDPNDIELIPEVYV-AQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIK 229 (429)
Q Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I-vQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~ 229 (429)
++.+...-. .....|+ +-.||. .|+|||+--.-+. . ..|.|.|-..
T Consensus 74 ~~qDi~sll-----------------~~~~~Y~T~EPfId-------~kyDirvqkIG~~---y------kA~~R~sis~ 120 (203)
T PF02750_consen 74 DFQDIASLL-----------------AITKDYATTEPFID-------AKYDIRVQKIGNN---Y------KAYMRTSISG 120 (203)
T ss_dssp HHHHHHHHH-----------------HHHTS-EEEEE----------EEEEEEEEEETTE---E------EEEEEEESSS
T ss_pred HHHHHHHHH-----------------HhcCceEEeecccc-------ceeEEEEEEEcCe---E------EEEEEccccc
Confidence 665443110 0112232 344554 6999998544443 2 3457877433
Q ss_pred CCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEE
Q psy16684 230 YCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFEL 309 (429)
Q Consensus 230 y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel 309 (429)
.-..|.. +. .++++ ...++. +. =+..+.+.+ +..++
T Consensus 121 nWK~N~g---------------------sa-~lEqi----------~~~~ry----k~----Wvd~~s~lf----GGlDI 156 (203)
T PF02750_consen 121 NWKANTG---------------------SA-MLEQI----------AMTERY----KL----WVDECSELF----GGLDI 156 (203)
T ss_dssp TSSTTSS---------------------SE-EEEEE-------------HHH----HH----HHHHHGGGG----G--SE
T ss_pred ccccccc---------------------ch-heeec----------CCChHH----HH----HHHHHHHHc----CCccE
Confidence 2222221 11 01100 000110 00 112223333 25789
Q ss_pred EEEEEEecCCccEEEEEeecC--CCCCCCChhhHHHHHHHHH
Q psy16684 310 FGFDILLQDNLNVCLLEANAA--PSMKATDDHDYKLKYNLIQ 349 (429)
Q Consensus 310 ~G~D~liD~~~kpWLLEVN~~--Psl~~~~~~d~~lk~~li~ 349 (429)
.++|++...+|+-+++|||.+ |-+....+.|..+...|+-
T Consensus 157 ~~v~ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV~ 198 (203)
T PF02750_consen 157 CAVDAIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLVV 198 (203)
T ss_dssp EEEEEEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHHH
Confidence 999999999999999999986 4455555677777777654
No 83
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.047 Score=55.95 Aligned_cols=188 Identities=17% Similarity=0.155 Sum_probs=105.8
Q ss_pred ecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeeccc
Q psy16684 110 EIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYIT 189 (429)
Q Consensus 110 ~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~ 189 (429)
.=+++...|++++. ..|++||.+.+.|+|+.+....++..+...+... .... .....+.||-+|++
T Consensus 125 ~~~e~a~ayi~~~g----~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~--------~~~f--g~~g~~VVIEEfL~ 190 (428)
T COG0151 125 TDPEEAKAYIDEKG----APIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLE--------GNAF--GSAGARVVIEEFLD 190 (428)
T ss_pred CCHHHHHHHHHHcC----CCEEEecccccCCCCeEEcCCHHHHHHHHHHHHh--------hccc--cCCCCcEEEEeccc
Confidence 33677888888774 3599999999999999999998877765432100 0000 11225678888887
Q ss_pred CccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHH
Q psy16684 190 NPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFL 269 (429)
Q Consensus 190 ~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l 269 (429)
|--|-+ .+++.+ -.+... ...+.|- |+-- .-..|| .|.+=+++..
T Consensus 191 ------GeE~S~--~a~~DG---~~v~p~------p~aQDhK---------ra~d---gD~GPN--TGGMGaysp~---- 235 (428)
T COG0151 191 ------GEEFSL--QAFVDG---KTVIPM------PTAQDHK---------RAYD---GDTGPN--TGGMGAYSPA---- 235 (428)
T ss_pred ------ceEEEE--EEEEcC---CeEEEC------ccccccc---------cccC---CCCCCC--CCCCCCCCCC----
Confidence 544443 444444 111100 0111110 0000 000111 3333222111
Q ss_pred HHccccchHHHHHHHHH-HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHH
Q psy16684 270 TAMHGREIVDELFQKIA-KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLI 348 (429)
Q Consensus 270 ~~~~g~~~~~~l~~~I~-~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li 348 (429)
+-..+.+.+++. +|+..++..+.+. ......++=.=+||+.++ |.+||.|+.=+=-........++..|+
T Consensus 236 -----P~~t~e~~~~~~~~Iv~ptv~gm~~E---G~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~sdl~ 306 (428)
T COG0151 236 -----PFITDEVVERAVEEIVEPTVEGMAKE---GYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLESDLV 306 (428)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccccHH
Confidence 112344555555 7888888877664 233566777789999999 999999996544334445556666666
Q ss_pred HHHHhcc
Q psy16684 349 QDALNVI 355 (429)
Q Consensus 349 ~d~l~lv 355 (429)
+-++.++
T Consensus 307 ~~~~a~~ 313 (428)
T COG0151 307 ELLLAAV 313 (428)
T ss_pred HHHHHHH
Confidence 6555554
No 84
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.61 E-value=0.097 Score=55.35 Aligned_cols=228 Identities=18% Similarity=0.303 Sum_probs=125.1
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-..++|.+.|..|||+.++.+..++.+.+..... +-+ ........+|-||+++| |. |-+-|+
T Consensus 152 GyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarr---------EA~-asFGddrv~iEkyl~~P-----RH--IEiQV~ 214 (645)
T COG4770 152 GYPVLIKASAGGGGKGMRVVETPEEFAEALESARR---------EAK-ASFGDDRVFIEKYLDKP-----RH--IEIQVF 214 (645)
T ss_pred CCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHH---------HHH-hhcCCceEehhhhcCCC-----ce--EEEEEE
Confidence 55788899999999999999999998876643210 000 13467789999999987 32 223333
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
-... --.+|++. |= .|+|..++.- +++.-.+-..+.+.+.|.
T Consensus 215 aD~H-GNvv~LgE----Rd-------------------CSlQRRhQKV--------------IEEAPaP~l~~~~R~amg 256 (645)
T COG4770 215 ADQH-GNVVHLGE----RD-------------------CSLQRRHQKV--------------IEEAPAPFLTEETREAMG 256 (645)
T ss_pred ecCC-CCEEEeec----cc-------------------cchhhhcchh--------------hhcCCCCCCCHHHHHHHH
Confidence 3321 12233221 11 1344333322 111111122345566677
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHH-HHHHHHHHhcccCCc-ccccc
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLK-YNLIQDALNVIDLEK-KLTGK 364 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk-~~li~d~l~lv~~~~-~~~~~ 364 (429)
+...++.+++- ...-=-+-|++|.++..|+||+|+. |....+....+- -.|++..|++..-++ .++..
T Consensus 257 ~aAv~~a~avg--------Y~gAGTVEFivd~~~~f~FlEMNTR--LQVEHPVTE~iTGiDLVewqiRVA~GekL~~~Q~ 326 (645)
T COG4770 257 EAAVAAAKAVG--------YVGAGTVEFIVDADGNFYFLEMNTR--LQVEHPVTELITGIDLVEWQIRVASGEKLPFTQD 326 (645)
T ss_pred HHHHHHHHhcC--------CCcCceEEEEEcCCCcEEEEEeecc--eeccccchhhhhhhHHHHHHHHHhcCCcCCcccc
Confidence 66666655541 1112246789999999999999995 333444333332 358888888875442 11222
Q ss_pred ccccCCeE--------------------E-Eec--CCCcccccCCCCCCccccCccccccccc--c--cccHHHHHHHHH
Q psy16684 365 EIRVGGFD--------------------K-IWC--GGPIYQINKGMNAPEFCKKSNFYNMYLG--C--VNDRDEQLEEMT 417 (429)
Q Consensus 365 ~~~~g~f~--------------------l-i~~--~~p~~~~~~~~~~~~~~~~~~~~~~~l~--~--~~~~~~~~~~~~ 417 (429)
...++|.= | .|+ .+|....|.|...++..++ |+-+.+. | --||++.|.+|.
T Consensus 327 di~l~GhAiE~RiyAEDp~r~FLPs~G~l~~~~~P~~~~vRvDsGV~~G~~Is~--~YDpMiAKLi~~G~dR~eAl~rl~ 404 (645)
T COG4770 327 DIPLNGHAIEARIYAEDPARGFLPSTGRLTRYRPPAGPGVRVDSGVREGDEISP--FYDPMIAKLIVHGADREEALDRLR 404 (645)
T ss_pred cccccceeEEEEEeccCcccCccCCCceeEeecCCCCCceecccCcccCCcccc--ccchHHHHHhhcCCCHHHHHHHHH
Confidence 22222221 1 122 1233445555555555432 2333321 2 249999999998
Q ss_pred Hhhh
Q psy16684 418 KWMN 421 (429)
Q Consensus 418 ~~~~ 421 (429)
..+.
T Consensus 405 ~AL~ 408 (645)
T COG4770 405 RALA 408 (645)
T ss_pred HHHH
Confidence 8765
No 85
>KOG0369|consensus
Probab=96.51 E-value=0.0082 Score=64.01 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
+|..+|+.+|. -..|+|.+.|..|||+.++++.+++.+-.+... ++.+ .........|.++|+.|-
T Consensus 174 ~EA~eF~k~yG----~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~--------SEA~--aaFGnG~~FvEkF~ekPr 239 (1176)
T KOG0369|consen 174 EEALEFVKEYG----LPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAY--------SEAL--AAFGNGTLFVEKFLEKPR 239 (1176)
T ss_pred HHHHHHHHhcC----CcEEEeecccCCCcceEEeechhhHHHHHHHHH--------HHHH--HhcCCceeeHHhhhcCcc
Confidence 67888998884 478999999999999999999999876553221 1100 134677899999999873
No 86
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=96.48 E-value=0.0057 Score=60.41 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=22.6
Q ss_pred EEEEEEEEecCCccEEEEEeecCCCCCCCC
Q psy16684 308 ELFGFDILLQDNLNVCLLEANAAPSMKATD 337 (429)
Q Consensus 308 el~G~D~liD~~~kpWLLEVN~~Psl~~~~ 337 (429)
..-|+||++.++| |++||||..+.=+..|
T Consensus 252 GsnGVDfvl~d~g-pyViEVNPR~qGt~e~ 280 (389)
T COG2232 252 GSNGVDFVLNDKG-PYVIEVNPRIQGTLEC 280 (389)
T ss_pred cccccceEeecCC-cEEEEecCcccchHHH
Confidence 4459999999887 9999999877554443
No 87
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.42 E-value=0.0076 Score=62.72 Aligned_cols=103 Identities=19% Similarity=0.342 Sum_probs=62.8
Q ss_pred cCCcccceeecch----------hHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCC
Q psy16684 101 LSNAMPMTFEIPS----------ETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSD 170 (429)
Q Consensus 101 ~~~f~P~T~~Lp~----------e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (429)
+..++|.|..+.. |+..|+..- ...||+||..+..|+||.+=...++ .+|.+...
T Consensus 306 I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~----r~~lVLKP~D~Ygg~GV~~G~e~~~-eeW~~~l~---------- 370 (445)
T PF14403_consen 306 IRRHVPWTRLLTAGRTTYQGEDVDLVEFAIAN----RDRLVLKPNDEYGGKGVYIGWETSP-EEWEAALE---------- 370 (445)
T ss_pred HHHhCCceEEEcCccccccccchhHHHHHHhc----hhcEEeccccccCCCCeEECCcCCH-HHHHHHHH----------
Confidence 5689999999976 444444333 2489999999999999998654432 23322110
Q ss_pred CCCCcccCccceeeeecccCcccc-----CCceeeeEEEEEEeeecCCeEEEEc----ceEEEEcCcC
Q psy16684 171 DPNDIELIPEVYVAQKYITNPYLL-----EGRKFDMRMYVLVTSFSPLTVWIAR----DGFARIAGIK 229 (429)
Q Consensus 171 ~~~~~~~~~~~~IvQkYI~~PlLi-----~GrKFDlRvyvLvts~~Pl~~y~y~----~g~~R~a~~~ 229 (429)
....++||+|+|+.-|.+- +|. +.+.-+... ...|+|. +.|+|+++.+
T Consensus 371 -----~a~~~~yilQe~v~~~~~~~~~~~dg~-~~~~~~~~~-----~g~fly~~~~~G~~tR~g~~~ 427 (445)
T PF14403_consen 371 -----EAAREPYILQEYVRPPREPMPAFEDGE-VVFEEYPYD-----SGPFLYGGKFAGCYTRLGTGN 427 (445)
T ss_pred -----HHhcCCcEEEEEecCCccccccccCCc-eeEeeeeee-----ccceeECCEEEEEEEEeccCC
Confidence 1234599999999954432 333 222222222 2345655 5688888543
No 88
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=96.32 E-value=0.059 Score=53.61 Aligned_cols=210 Identities=15% Similarity=0.175 Sum_probs=93.9
Q ss_pred eEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHh-cCCCceEEEcCCC--CC-
Q psy16684 63 KIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEAR-RDSHNMWIVKPSG--GS- 138 (429)
Q Consensus 63 ~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~-~~~~~~wI~KP~~--~s- 138 (429)
.+.-+.+...|.+...+.+.+....... .. ..=..|....+.++.....+... .+-.-..|+||.. |+
T Consensus 81 viDp~~~i~~l~dR~~~~~~l~~l~~~~-~~-------~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa 152 (307)
T PF05770_consen 81 VIDPPDAIRPLLDRQSMLQVLSELELSE-GD-------GRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSA 152 (307)
T ss_dssp EET-HHHHHHHCCHHCCHHHHHHHHHHH-TC-------TTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTS
T ss_pred EEcCHHHHHHHHCHHHHHHHHHHhhccc-cC-------CcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCc
Confidence 4566666666677777777776644311 11 11246776666633222222222 2234579999975 33
Q ss_pred CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEE
Q psy16684 139 QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIA 218 (429)
Q Consensus 139 ~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y 218 (429)
....+.++-+.+.+.+ ...+.|+|+||.+ +|.= +.+||+-.. +.
T Consensus 153 ~SH~Maivf~~~gL~~-----------------------L~~P~VlQeFVNH----ggvL--fKVyVvGd~-----v~-- 196 (307)
T PF05770_consen 153 DSHKMAIVFNEEGLKD-----------------------LKPPCVLQEFVNH----GGVL--FKVYVVGDK-----VF-- 196 (307)
T ss_dssp CCCEEEEE-SGGGGTT-------------------------SSEEEEE--------TTEE--EEEEEETTE-----EE--
T ss_pred cceEEEEEECHHHHhh-----------------------cCCCEEEEEeecC----CCEE--EEEEEecCE-----EE--
Confidence 5567777776665532 2347899999997 3332 345665543 11
Q ss_pred cceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHh
Q psy16684 219 RDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVEC 298 (429)
Q Consensus 219 ~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~ 298 (429)
...|.|..+.+....+.....+.-..+.+.... .. ...+.... . ........ ++.+....+.+
T Consensus 197 --~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~----~~--~~~~d~~~-~-~~~~p~~~-------~v~~la~~LR~ 259 (307)
T PF05770_consen 197 --VVKRPSLPNVSSGKLDREEIFFDFHQVSKLESS----SD--LSDLDKDP-S-QVEMPPDE-------LVEKLAKELRR 259 (307)
T ss_dssp --EEEEE------SSS-TCGGCCCEGGGTCSTTTS----SG--GGSBSS-T-T-TTTS--HH-------HHHHHHHHHHH
T ss_pred --EEECCCCCCCCcccccccccceeccccCCcccc----Cc--hhhcccCc-c-cccCCCHH-------HHHHHHHHHHH
Confidence 245666666654433222222221111111100 00 00000000 0 00000112 23333344444
Q ss_pred hhcCCCcceEEEEEEEEecCC--ccEEEEEeecCCCCCCCCh
Q psy16684 299 IMMGNKHCFELFGFDILLQDN--LNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 299 ~~~~~~~~Fel~G~D~liD~~--~kpWLLEVN~~Psl~~~~~ 338 (429)
.+ ...|||||+++|.. ++.++|.||.-||+..--.
T Consensus 260 ~l-----gL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~ 296 (307)
T PF05770_consen 260 AL-----GLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPD 296 (307)
T ss_dssp HH-----T-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCT
T ss_pred Hh-----CcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCC
Confidence 44 57899999999965 5899999999999986544
No 89
>KOG0238|consensus
Probab=95.63 E-value=0.1 Score=54.52 Aligned_cols=180 Identities=17% Similarity=0.223 Sum_probs=100.9
Q ss_pred CCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEE
Q psy16684 126 SHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYV 205 (429)
Q Consensus 126 ~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyv 205 (429)
-+-..++|++.|..|+|..++.+.+++.+.++..... .. ........++.|||+||- . +-+-|
T Consensus 147 IgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~E---------a~-~sFGdd~~llEkfi~npR-----H--iEvQv 209 (670)
T KOG0238|consen 147 IGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQE---------AA-KSFGDDGMLLEKFIDNPR-----H--IEVQV 209 (670)
T ss_pred cCCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHH---------HH-hhcCcchhhHHHhccCCc-----e--EEEEE
Confidence 3557899999999999999999999888766532110 00 134567889999999983 2 22222
Q ss_pred EEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHH
Q psy16684 206 LVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKI 285 (429)
Q Consensus 206 Lvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I 285 (429)
+.... ---+|++. |= .|+|..++. .+++.-.+...+++...+
T Consensus 210 ~gD~h-Gnav~l~E----Rd-------------------CSvQRRnQK--------------iiEEaPap~l~~e~R~~l 251 (670)
T KOG0238|consen 210 FGDKH-GNAVHLGE----RD-------------------CSVQRRNQK--------------IIEEAPAPNLPEETRRAL 251 (670)
T ss_pred EecCC-CcEEEecc----cc-------------------cchhhhhhh--------------hhhcCCCCCCCHHHHHHH
Confidence 33221 12233221 11 123333222 122211122234555566
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHH-HHHHHHHHHhcccCC-ccccc
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKL-KYNLIQDALNVIDLE-KKLTG 363 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~l-k~~li~d~l~lv~~~-~~~~~ 363 (429)
.+....+..++- ...-=-+.|++|+.++-+++|+|+.=. ...+...-+ =..|++..+++..-+ -+++.
T Consensus 252 geaAv~aa~avg--------Y~~aGTVEFi~D~~~~FyFmEmNTRLQ--VEHPvTEmItg~DLVewqiRvA~ge~lp~~q 321 (670)
T KOG0238|consen 252 GEAAVRAAKAVG--------YVGAGTVEFIVDSKDNFYFMEMNTRLQ--VEHPVTEMITGTDLVEWQIRVAAGEPLPLKQ 321 (670)
T ss_pred HHHHHHHHHhhC--------CcccceEEEEEcCCCcEEEEEeeceee--ecccchhhccchHHHHHHHHHhcCCCCCCCc
Confidence 666665555541 111224689999999999999999533 333322222 246888888887533 23444
Q ss_pred cccccCC
Q psy16684 364 KEIRVGG 370 (429)
Q Consensus 364 ~~~~~g~ 370 (429)
.+..++|
T Consensus 322 ~ei~l~G 328 (670)
T KOG0238|consen 322 EEIPLNG 328 (670)
T ss_pred ceeeecc
Confidence 4444443
No 90
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.38 Score=47.67 Aligned_cols=156 Identities=13% Similarity=0.232 Sum_probs=91.1
Q ss_pred eecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecc
Q psy16684 109 FEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYI 188 (429)
Q Consensus 109 ~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI 188 (429)
|.+-+.+..|.+... .-+-..++||..+|.|+|-.++++.+++....+... ........+.||-.+|
T Consensus 132 Y~fa~s~~e~~~a~~-~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~------------~g~R~~~~RVIVE~fv 198 (394)
T COG0027 132 YRFADSLEELRAAVE-KIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQ------------QGGRGGSGRVIVEEFV 198 (394)
T ss_pred ccccccHHHHHHHHH-HcCCCeecccccccCCCCceeecCHHHHHHHHHHHH------------hcCCCCCCcEEEEEEe
Confidence 333334444443332 335689999999999999999999999976443211 0013456788999998
Q ss_pred cCccccCCceeeeEEEEEEee-ecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHH
Q psy16684 189 TNPYLLEGRKFDMRMYVLVTS-FSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRL 267 (429)
Q Consensus 189 ~~PlLi~GrKFDlRvyvLvts-~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~ 267 (429)
+ ||+-+-+|..+ +++... ||.. --|- |.. .+| -..|.
T Consensus 199 ~---------fd~EiTlLtvr~~~~~~~---------Fc~P----------IGHr-----q~d-gdY--~ESWQ------ 236 (394)
T COG0027 199 K---------FDFEITLLTVRAVDGTGS---------FCAP----------IGHR-----QED-GDY--RESWQ------ 236 (394)
T ss_pred c---------ceEEEEEEEEEEecCCCC---------cCCC----------cccc-----cCC-CCh--hcccC------
Confidence 6 88888766543 222211 3322 1221 100 111 01222
Q ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 268 FLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 268 ~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
+....+...++-+.|..+...++ +.+.+||+.+++.-| ++|+-||-..|-=+
T Consensus 237 ------P~~mS~~al~~A~~IA~~vt~aL--------GG~GiFGVElfv~gD-eV~FsEVSPRPHDT 288 (394)
T COG0027 237 ------PQEMSEAALEEAQSIAKRVTDAL--------GGRGLFGVELFVKGD-EVIFSEVSPRPHDT 288 (394)
T ss_pred ------ccccCHHHHHHHHHHHHHHHHhh--------cCccceeEEEEEeCC-EEEEeecCCCCCCC
Confidence 22222333344444444433333 578999999999877 79999998888654
No 91
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=94.83 E-value=0.18 Score=55.28 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=94.3
Q ss_pred CCcccceeecch---hHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccC
Q psy16684 102 SNAMPMTFEIPS---ETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELI 178 (429)
Q Consensus 102 ~~f~P~T~~Lp~---e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
-.-+|.|=-.++ +..+|.+++ +-..++|.+.|..|||..++++.+++.+-....+. +.+ ....
T Consensus 134 vPvipgt~~~~~~~ee~~~fa~~~----gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~Aks---------EAk-aAFG 199 (1149)
T COG1038 134 VPVIPGTDGPIETIEEALEFAEEY----GYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKS---------EAK-AAFG 199 (1149)
T ss_pred CCccCCCCCCcccHHHHHHHHHhc----CCcEEEEEccCCCccceeeecCHHHHHHHHHHHHH---------HHH-HhcC
Confidence 355666666554 445555554 45789999999999999999999988776543211 000 1345
Q ss_pred ccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCc-CCC
Q psy16684 179 PEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL-SQG 257 (429)
Q Consensus 179 ~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y-~~g 257 (429)
.....|.|||+||-- |-+-+|-... --.+.+|. |= .|+|..++.- +-.
T Consensus 200 ~~eVyvEk~ve~pkH-------IEVQiLgD~~-GnvvHLfE----RD-------------------CSvQRRhQKVVE~A 248 (1149)
T COG1038 200 NDEVYVEKLVENPKH-------IEVQILGDTH-GNVVHLFE----RD-------------------CSVQRRHQKVVEVA 248 (1149)
T ss_pred CCcEEhhhhhcCcce-------eEEEEeecCC-CCEEEEee----cc-------------------cchhhccceeEEec
Confidence 678889999999732 2233333321 12333331 21 2344433322 000
Q ss_pred CccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 258 RKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 258 ~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
- .......+.++|++..++....+- +. .-=-+.|++|++++-++||||..=.-.
T Consensus 249 P---------------a~~L~~~~R~~ic~~Avkla~~~~--Y~------~AGTvEFLvd~~~~fyFIEvNPRiQVE 302 (1149)
T COG1038 249 P---------------APYLSPELRDEICDDAVKLARNIG--YI------NAGTVEFLVDEDGKFYFIEVNPRIQVE 302 (1149)
T ss_pred C---------------CCCCCHHHHHHHHHHHHHHHHHcC--Cc------ccceEEEEEcCCCcEEEEEecCceeeE
Confidence 0 011124556667666665555431 11 111467899999999999999765544
No 92
>KOG3895|consensus
Probab=94.41 E-value=0.25 Score=49.34 Aligned_cols=201 Identities=15% Similarity=0.225 Sum_probs=120.4
Q ss_pred eEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCC
Q psy16684 63 KIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRG 142 (429)
Q Consensus 63 ~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~G 142 (429)
.||-.-..+.++.|.-+...|.+..+.+. +..+..+|.||. |. ++++ ...+.-..++|-..+.+|-|
T Consensus 188 ~vNSl~SvynFcdkpwvf~Qlvki~~slG-------~e~fPli~qt~y-Pn--HK~m---~s~~tyPvVVkvghahsGmG 254 (488)
T KOG3895|consen 188 SVNSLTSVYNFCDKPWVFAQLVKITKSLG-------PEKFPLIEQTFY-PN--HKEM---LSQPTYPVVVKVGHAHSGMG 254 (488)
T ss_pred ccchhHHHHHhccchHHHHHHHHHHHhcC-------ccccccceeeec-CC--chhh---ccCCCCcEEEEecccccccc
Confidence 46666667778889999888888776653 235677888776 44 3332 12233478899999999999
Q ss_pred EEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceE
Q psy16684 143 ILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGF 222 (429)
Q Consensus 143 I~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~ 222 (429)
=..+++-.++.+...-. .....-.-+|.+|+ -|+|||+-=.-.. .++ |
T Consensus 255 KiKV~Nh~dfqDi~svv----------------al~~Tyat~epFiD-------aKYDiriQKIG~n---YKa------y 302 (488)
T KOG3895|consen 255 KIKVENHEDFQDIASVV----------------ALTKTYATAEPFID-------AKYDIRIQKIGHN---YKA------Y 302 (488)
T ss_pred eeeecchhhhHhHHHHH----------------HHHhhhhhcccccc-------ccceeehhhhhhh---HHH------H
Confidence 99998876655432100 00111223566666 4899997322221 222 2
Q ss_pred EEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHH--HHHHHHHHHhhh
Q psy16684 223 ARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKV--VITALKSVECIM 300 (429)
Q Consensus 223 ~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~i--i~~~l~s~~~~~ 300 (429)
.|.+-.. | .-|| . | ..++++|.-. -..-+.++...+
T Consensus 303 mRtsIsg----n------WKtN-----------t-----------------G----SamLEQIamseRyklwvdtcse~f 340 (488)
T KOG3895|consen 303 MRTSISG----N------WKTN-----------T-----------------G----SAMLEQIAMSERYKLWVDTCSEMF 340 (488)
T ss_pred hhhhhcc----C------cccC-----------c-----------------h----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322211 0 0112 1 1 1122222211 112233444444
Q ss_pred cCCCcceEEEEEEEEecCCccEEEEEeec--CCCCCCCChhhHHHHHHHHHHHHhc
Q psy16684 301 MGNKHCFELFGFDILLQDNLNVCLLEANA--APSMKATDDHDYKLKYNLIQDALNV 354 (429)
Q Consensus 301 ~~~~~~Fel~G~D~liD~~~kpWLLEVN~--~Psl~~~~~~d~~lk~~li~d~l~l 354 (429)
+...+..+|.+...+|+-+++|||. .|-+......|..+...|+...+.-
T Consensus 341 ----GgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq 392 (488)
T KOG3895|consen 341 ----GGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQ 392 (488)
T ss_pred ----CCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhh
Confidence 2567788999999999999999997 4777777788999988888776653
No 93
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=94.35 E-value=0.09 Score=54.03 Aligned_cols=141 Identities=23% Similarity=0.284 Sum_probs=92.2
Q ss_pred cCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeec--chhHHHHHHHHhcCCCceEEEcCC
Q psy16684 58 MKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEI--PSETALFLQEARRDSHNMWIVKPS 135 (429)
Q Consensus 58 l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~ 135 (429)
...+.-+--=||+..+-.|..+. -+=.+.+.+-.+ ++ +.. -++||.. |+|+...++... ..++||+
T Consensus 306 r~G~VtiaNA~GtGV~ddka~~~-y~P~~~~~ylge----~~-lL~-nv~T~~c~~~~el~~VL~~l~-----~lViK~~ 373 (488)
T COG2308 306 RAGNVTIANALGTGVADDKALYA-YVPQMIEYYLGE----EP-LLP-NVPTYWCGEPDELEHVLANLS-----ELVIKPV 373 (488)
T ss_pred hcCcEEEecCCCcCcccchhHHH-HHHHHHHHHccc----cc-ccC-CCCeeecCCHHHHHHHHhchh-----hheEeee
Confidence 34556555567888888887654 333333333221 11 111 2357776 788888777665 6778999
Q ss_pred CCCCCCCEEEecCc--hHHHHHhhccCCCcccccCCCCCCCcccCccceeeeeccc---CccccC----CceeeeEEEEE
Q psy16684 136 GGSQGRGILLFKKL--SEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYIT---NPYLLE----GRKFDMRMYVL 206 (429)
Q Consensus 136 ~~s~G~GI~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~---~PlLi~----GrKFDlRvyvL 206 (429)
.++.|-|..+=..+ +++..+.+.. ....++||.|+-++ -|..++ .|..|+|+|++
T Consensus 374 ~~~gg~~~lvGpa~s~~e~a~~~~~i----------------~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~ 437 (488)
T COG2308 374 EGSGGYGMLVGPAASKAELAAFAERI----------------KADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFAL 437 (488)
T ss_pred ccCCCCcceeccccCHHHHHHHHHHH----------------HhChhhhcccccccccccceEECCeeccccccceeEEE
Confidence 99888777664333 3333333211 23567899998775 355555 47899999999
Q ss_pred EeeecCCeEEEEcceEEEEcCcC
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIK 229 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~ 229 (429)
.+. -.+|+.-+|+.|++...
T Consensus 438 ~~~---~~~~v~pGGLtRVal~~ 457 (488)
T COG2308 438 ADR---DGVQVMPGGLTRVALRE 457 (488)
T ss_pred EcC---CceEEcccceeeeeecC
Confidence 986 67999999999999874
No 94
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=94.23 E-value=0.6 Score=46.31 Aligned_cols=163 Identities=20% Similarity=0.280 Sum_probs=94.2
Q ss_pred ccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceee
Q psy16684 105 MPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVA 184 (429)
Q Consensus 105 ~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iv 184 (429)
+|+.|.=|+|... ..|+|+.+.-.|||-|+.++.++..+..+...... -.+ ...-+.+.+
T Consensus 139 ~P~~~~~PeeIdr-----------~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~g--------vi~-~edlkna~I 198 (361)
T COG1759 139 IPKKYKSPEEIDR-----------PVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRG--------VIT-EEDLKNARI 198 (361)
T ss_pred CCcccCChHHcCC-----------ceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcC--------Ccc-hhhhhhcee
Confidence 6777777776643 89999999888999999999988776554321100 000 123457899
Q ss_pred eecccCccccCCceeeeEEEEEEeeecCC----eEE------EE-cceEEEEcCcCCCCCCccCcccccccccccccCCC
Q psy16684 185 QKYITNPYLLEGRKFDMRMYVLVTSFSPL----TVW------IA-RDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGEN 253 (429)
Q Consensus 185 QkYI~~PlLi~GrKFDlRvyvLvts~~Pl----~~y------~y-~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~ 253 (429)
|+||- |-.|-+-.+ ++|+ ... -- -+|++|+-+..--.-++ .|.
T Consensus 199 eEYv~------G~~f~~~yF-----yS~i~~~lEl~g~D~R~Esn~Dg~~RlPa~~ql~l~~---------------~pt 252 (361)
T COG1759 199 EEYVV------GAPFYFHYF-----YSPIKDRLELLGIDRRYESNLDGLVRLPAKDQLELNL---------------EPT 252 (361)
T ss_pred eEEee------ccceeeeee-----eccccCceeEeeeeheeeccchhhccCCHHHHhhcCC---------------Cce
Confidence 99997 444444332 1111 110 00 02333331111000011 112
Q ss_pred c-CCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeec
Q psy16684 254 L-SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANA 329 (429)
Q Consensus 254 y-~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~ 329 (429)
| .-|+ .+...-+.+++++-++..+.+.+++..+. ++-..-|.+-.++++++..++.||-+
T Consensus 253 yvv~Gn--------------~p~vlRESLL~~vfe~ger~V~a~kel~~--PG~iGpFcLq~~~t~dl~~vVfevS~ 313 (361)
T COG1759 253 YVVVGN--------------IPVVLRESLLPKVFEMGERFVEATKELVP--PGIIGPFCLQTIVTDDLEFVVFEVSA 313 (361)
T ss_pred EEEECC--------------cchhhHHHHHHHHHHHHHHHHHHHHHhcC--CCcccceeeeeeecCCccEEEEEEec
Confidence 2 1111 12223467788888888888888877665 34455566677899999999999865
No 95
>KOG2158|consensus
Probab=90.98 E-value=0.055 Score=55.68 Aligned_cols=52 Identities=42% Similarity=0.781 Sum_probs=48.6
Q ss_pred cceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccC
Q psy16684 305 HCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDL 357 (429)
Q Consensus 305 ~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~ 357 (429)
-||+.+|+|++. ...+||++|+|..|++..+...++..+..++..++.++..
T Consensus 13 v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i 64 (565)
T KOG2158|consen 13 VCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNI 64 (565)
T ss_pred eehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCC
Confidence 499999999999 9999999999999999999999999999999999988754
No 96
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=88.01 E-value=9.8 Score=39.18 Aligned_cols=49 Identities=29% Similarity=0.121 Sum_probs=37.0
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeeccc
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYIT 189 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~ 189 (429)
+-..|+||+.+..|.|-.++.+.+|+......... .....+.+++++|.
T Consensus 150 g~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~--------------~s~~~~vl~eesi~ 198 (400)
T COG0458 150 GYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLR--------------ASPVEEVLIEESII 198 (400)
T ss_pred CCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccc--------------cCccccceeeeeec
Confidence 34789999999999999999999999888754310 22334667777776
No 97
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=82.68 E-value=1.4 Score=44.52 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.2
Q ss_pred cceEEEEEEEEecCCccEEEEEeecCCC
Q psy16684 305 HCFELFGFDILLQDNLNVCLLEANAAPS 332 (429)
Q Consensus 305 ~~Fel~G~D~liD~~~kpWLLEVN~~Ps 332 (429)
....++|+|+..|.+|++|+||.|+...
T Consensus 66 ~~~~~~g~Dl~r~~dG~w~VleDn~~~P 93 (330)
T PF04174_consen 66 VRLHFYGADLVRDPDGRWRVLEDNTRAP 93 (330)
T ss_dssp -S-SEEEEEEEE-SSS-EEEEEEE-SS-
T ss_pred eEEEEEEEeeeECCCCCEEEEEecCCCC
Confidence 3466999999999999999999999743
No 98
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=82.23 E-value=1.8 Score=44.78 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=36.5
Q ss_pred eEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCc
Q psy16684 129 MWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGR 197 (429)
Q Consensus 129 ~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~Gr 197 (429)
.|+.||..|-.|.+|.+++.-..+.+- ......+.+|.|+|++.| .++|+
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~------------------~g~y~~~~~IyQ~~~~Lp-~f~g~ 358 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDT------------------DGNYAEEPRVVQQLIEWG-RFDGC 358 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEecc------------------CCCCCCCCeEEEEccCCc-ccCCc
Confidence 599999999999999999763322100 002346789999999987 55665
No 99
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=78.54 E-value=18 Score=36.83 Aligned_cols=104 Identities=18% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEE
Q psy16684 125 DSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMY 204 (429)
Q Consensus 125 ~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvy 204 (429)
+..-..|+|..+|.-|-||.-+++.+|+..+-+.... +-...++ +......|||+.|..-=.+++-
T Consensus 255 ~e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~Rn------KM~~~Ke-g~~V~~VIiQEGV~T~E~~~~a------- 320 (403)
T TIGR02049 255 HTQPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERN------KMAKVKE-GLEVSEVIIQEGVYTFEMFNEA------- 320 (403)
T ss_pred CCCCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhh------hcccccC-CCccceEEEecCcceeeeeCCc-------
Confidence 3455889999999999999999999999877543211 0001112 4456789999999752223332
Q ss_pred EEEeeecCCeEEEE----cceEEEEcCcCCCCCCccCcccccccccc
Q psy16684 205 VLVTSFSPLTVWIA----RDGFARIAGIKYCKDNFADNCMHLTNTAI 247 (429)
Q Consensus 205 vLvts~~Pl~~y~y----~~g~~R~a~~~y~~~~~~~~~~HLTN~si 247 (429)
|. .|+ +|+. -+||-|+.+.+-.-+|++..-+|..=.+.
T Consensus 321 --vA--EPV-VYmid~~vvggfYRvh~~Rg~dENLNapG~~F~plaf 362 (403)
T TIGR02049 321 --VA--EPV-VYMIGRTVTGGFYRVHTGRGVDENLNAPGMHFVPLSF 362 (403)
T ss_pred --cc--Cce-EEEECCEEeEEEEEecCCCCCcccCCCCCCeeeeccc
Confidence 11 133 4443 36899999988777888888888765554
No 100
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=71.43 E-value=5.7 Score=43.42 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=37.1
Q ss_pred eEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeE
Q psy16684 129 MWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMR 202 (429)
Q Consensus 129 ~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlR 202 (429)
.|+.||..|-.|.+|.+++.-..+..-. +.....+.+|.|+|.+.| .++|...=|-
T Consensus 529 ~yV~KPi~GREG~nV~i~~~~g~~~~~~-----------------~g~y~~~~~IyQ~~~~LP-~f~~~~~~iG 584 (619)
T PRK10507 529 GYAVKPIAGRCGSNIDLVSHQEEVLDKT-----------------SGKFAEQKNIYQQLWCLP-KVDGKYIQVC 584 (619)
T ss_pred CeEeccCCCcCCCCEEEEeCCCcEeecc-----------------CCCCCCCCeEEEEeccCc-ccCCCEEEEE
Confidence 5999999999999999997522211100 012345789999999987 4455433333
No 101
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=66.81 E-value=4.8 Score=40.60 Aligned_cols=83 Identities=24% Similarity=0.239 Sum_probs=41.1
Q ss_pred hcCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeec-chhHHHHHHHHhcCCCceEEEcCC
Q psy16684 57 SMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEI-PSETALFLQEARRDSHNMWIVKPS 135 (429)
Q Consensus 57 ~l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~L-p~e~~~f~~~~~~~~~~~wI~KP~ 135 (429)
.......|=+-||+..+..|..+.- +-++.+.+-.+ ..+..-+|.++.- |.+....++... .|++||+
T Consensus 227 ~r~G~V~iaNa~G~gv~edkal~~~-lp~~~r~~Lge-----ellL~~VpT~~cg~~~~~~~Vl~~l~-----~lvvKp~ 295 (330)
T PF04174_consen 227 YRAGNVVIANAPGSGVAEDKALYAF-LPRMIRYYLGE-----ELLLPNVPTWWCGDPEDREYVLANLD-----ELVVKPA 295 (330)
T ss_dssp HHTTS-EEES-TTTHHHHSTTTGGG-HHHHHHHHH-S-------SSEE---EETTSHHHHHHHHHSGG-----GEEEEE-
T ss_pred HHhCCEEEECCCccchhcchhHHHH-hHHHHHHHcCC-----CcccCCCCcEeCCCHHHHHHHHhchh-----hcEEEec
Confidence 3455566667788888888876543 24444443222 1122225554444 566776666666 7999999
Q ss_pred CCCCCCCEEEecCch
Q psy16684 136 GGSQGRGILLFKKLS 150 (429)
Q Consensus 136 ~~s~G~GI~l~~~~~ 150 (429)
.++.|+|+.+-.+++
T Consensus 296 ~g~gg~~~~~G~~~s 310 (330)
T PF04174_consen 296 DGYGGKGVYIGPKLS 310 (330)
T ss_dssp -------EEEGGG--
T ss_pred CCCCCCcceeCCcCC
Confidence 999999999877665
No 102
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=64.55 E-value=12 Score=37.02 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=49.8
Q ss_pred ccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCCC------CCCCEE
Q psy16684 71 YEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGS------QGRGIL 144 (429)
Q Consensus 71 ~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s------~G~GI~ 144 (429)
.-|+.|-.|++...+ .---+|.||.+.++......+.. -..|+||.+|. |.+-+
T Consensus 110 ~wlceKPllY~ra~e---------------lgl~~P~Ty~v~S~~d~~~~el~----FPvILKP~mgg~~~~~araKa~- 169 (415)
T COG3919 110 RWLCEKPLLYNRAEE---------------LGLPYPKTYLVNSEIDTLVDELT----FPVILKPGMGGSVHFEARAKAF- 169 (415)
T ss_pred HHHhhCcHHHHHHHH---------------hCCCCcceEEecchhhhhhhhee----eeEEecCCCCCcceeehhhhee-
Confidence 346777777654433 12348999999988888777653 25899997643 11111
Q ss_pred EecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeeccc
Q psy16684 145 LFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYIT 189 (429)
Q Consensus 145 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~ 189 (429)
...+-+++........ +...+.+.|||++|.
T Consensus 170 ~a~d~ee~k~a~~~a~--------------eeigpDnvvvQe~IP 200 (415)
T COG3919 170 TAADNEEMKLALHRAY--------------EEIGPDNVVVQEFIP 200 (415)
T ss_pred eccCHHHHHHHHHHHH--------------HhcCCCceEEEEecC
Confidence 2223333332221100 135678999999997
No 103
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=61.81 E-value=7.4 Score=39.72 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=54.4
Q ss_pred CCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEE
Q psy16684 125 DSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMY 204 (429)
Q Consensus 125 ~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvy 204 (429)
...-..|+|..+|.-|-||..+++.+|+..+-+.... +.. ..++ +......|||+.|..--.+++-.-.-=+|
T Consensus 258 ~e~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~Rn---KM~---~~Ke-g~~v~~VIIQEGV~T~E~~~~avAEPVVY 330 (404)
T PF08886_consen 258 KEKPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRN---KMS---VIKE-GLEVSEVIIQEGVYTFERFNDAVAEPVVY 330 (404)
T ss_dssp -S---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHH---HHH----SSS-SS---EEEEEE-----EEETTEEEEEEEE
T ss_pred CCCceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhh---hhh---hhcC-CCccceeEEecCcchhhhhCCccccceEE
Confidence 3455889999999999999999999998644321100 000 0111 44567899999998644556533222222
Q ss_pred EEEeeecCCeEEEEcceEEEEcCcCCCCCCccCccccccccccc
Q psy16684 205 VLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQ 248 (429)
Q Consensus 205 vLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siq 248 (429)
+.-. | .-+||.|+-+.+-.-+|++..-+|..=.+..
T Consensus 331 mid~-------~-vvggfyRvh~~rg~deNLNapGm~F~plaf~ 366 (404)
T PF08886_consen 331 MIDR-------Y-VVGGFYRVHTERGVDENLNAPGMHFVPLAFE 366 (404)
T ss_dssp EETT-------E-EEEEEEEEES--STTTTTS--TT-EEEEE--
T ss_pred EECC-------E-EEEEEEEecCCCCCccCCCCCCCEeeecccc
Confidence 2111 1 2368999999988788888888887766654
No 104
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=59.40 E-value=6.4 Score=39.83 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=34.7
Q ss_pred eEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 129 MWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 129 ~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
.|+.||..|..|-+|.++.+-.....-.. .....+.+|.|+|.+.|
T Consensus 298 ~yv~KPl~gREGaNv~i~~~~~~~~~~~~-----------------G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 298 SYVRKPLFGREGANVSIFEDAGKVLDKAD-----------------GPYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhhccccccccCCCeeEEecCCceeecCC-----------------CCccccchhhhhhccCc
Confidence 59999999999999999976443322111 14467889999999977
No 105
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=52.51 E-value=16 Score=31.73 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=23.2
Q ss_pred EEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 308 ELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 308 el~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.-|.+||.+.++|+..|||+|..=+...
T Consensus 93 ~~~vlDvg~~~~G~~~lVE~N~~~~sG~ 120 (130)
T PF14243_consen 93 PAYVLDVGVTDDGGWALVEANDGWSSGL 120 (130)
T ss_pred CeEEEEEEEeCCCCEEEEEecCcccccc
Confidence 4578999999999999999998655443
No 106
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=44.54 E-value=77 Score=32.45 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=29.8
Q ss_pred chhHHHHHHHHhcCCCceEEEcCC--CCCCCC--CEEEecCchHHHHHhhc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPS--GGSQGR--GILLFKKLSEFEEWREN 158 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~--~~s~G~--GI~l~~~~~~i~~~~~~ 158 (429)
++|.....+.+. ...+++||. .+.+|+ |+.+.++.+++.+..++
T Consensus 28 ~~ea~~~~~~ig---~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~ 75 (386)
T TIGR01016 28 VEEAEEIAAKLG---AGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEK 75 (386)
T ss_pred HHHHHHHHHHhC---CCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHH
Confidence 556666665542 136999998 334554 99999998888776643
No 107
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=44.22 E-value=45 Score=33.21 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCC-ccEEEEEeecCCC
Q psy16684 279 DELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDN-LNVCLLEANAAPS 332 (429)
Q Consensus 279 ~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~-~kpWLLEVN~~Ps 332 (429)
+.|...|.+.+...+ .+.+ ..+-|-||+-++.+ .++||||+|.--.
T Consensus 194 ~~I~~~I~~F~~~~I---~~~~-----~~~~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 194 EEIRSKIQEFFEEHI---KPKF-----PLDNYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred HHHHHHHHHHHHHHH---HhhC-----CCCCEEEEEEEcCCCCeEEEEEecCCcc
Confidence 445555555553333 2233 35668899999999 9999999998554
No 108
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=43.90 E-value=84 Score=29.36 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=36.3
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCC--CCCC--CCEEEecCchHHHHHhhcc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSG--GSQG--RGILLFKKLSEFEEWRENK 159 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~--~s~G--~GI~l~~~~~~i~~~~~~~ 159 (429)
+|+..+. |+|......+.. ...|++||-- |.|| -||.++.+.++...+.++.
T Consensus 18 vp~g~~a~s~eea~~~~~~l~---~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~m 75 (202)
T PF08442_consen 18 VPRGVVATSPEEAREAAKELG---GKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEM 75 (202)
T ss_dssp --SEEEESSHHHHHHHHHHHT---TSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTT
T ss_pred CCCeeecCCHHHHHHHHHHhC---CCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHH
Confidence 6776666 677877777664 3479999965 3333 3899999999999887654
No 109
>KOG2983|consensus
Probab=41.10 E-value=69 Score=31.30 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEEEEecCCccEEEEEeec
Q psy16684 308 ELFGFDILLQDNLNVCLLEANA 329 (429)
Q Consensus 308 el~G~D~liD~~~kpWLLEVN~ 329 (429)
+-|-||+-++..+|+|||.+|.
T Consensus 229 edfvfDVYi~k~~kv~lID~Np 250 (334)
T KOG2983|consen 229 EDFVFDVYITKERKVWLIDFNP 250 (334)
T ss_pred CCeeEEEEecCCCcEEEEeccC
Confidence 5688999999999999999986
No 110
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=36.64 E-value=51 Score=34.49 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=36.6
Q ss_pred CCcceEEEEEEEEecCCccEEEEEeecC-CCCCCCChhhHHHHHHHHHHHH
Q psy16684 303 NKHCFELFGFDILLQDNLNVCLLEANAA-PSMKATDDHDYKLKYNLIQDAL 352 (429)
Q Consensus 303 ~~~~Fel~G~D~liD~~~kpWLLEVN~~-Psl~~~~~~d~~lk~~li~d~l 352 (429)
..+....+|+|+.-|.+|+.|+||=|.. ||=....-.+.+.-.+++-|++
T Consensus 141 ~g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely 191 (488)
T COG2308 141 GGHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELY 191 (488)
T ss_pred CceEEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHH
Confidence 4577889999999999999999999984 7766554444444444444444
No 111
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=35.89 E-value=30 Score=34.16 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEEecCCccEEEEEeecCCC
Q psy16684 310 FGFDILLQDNLNVCLLEANAAPS 332 (429)
Q Consensus 310 ~G~D~liD~~~kpWLLEVN~~Ps 332 (429)
=.|||.+..+.+.|+||||.--+
T Consensus 196 KrFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 196 KRFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred eEEEEEEEcCCEEEEEEEeeecC
Confidence 36899999999999999998655
No 112
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=24.82 E-value=78 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=10.3
Q ss_pred EEEEecCCccEEE
Q psy16684 312 FDILLQDNLNVCL 324 (429)
Q Consensus 312 ~D~liD~~~kpWL 324 (429)
.+|..|.+++.|+
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4788899999997
No 113
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=24.66 E-value=1.1e+02 Score=31.54 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=39.1
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCC--CCCCC--CEEEecCchHHHHHhhcc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSG--GSQGR--GILLFKKLSEFEEWRENK 159 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~--~s~G~--GI~l~~~~~~i~~~~~~~ 159 (429)
.|+++.. |+|......++. ...|++|+-- |.||+ ||.++.+.++..++.+..
T Consensus 19 vp~g~v~~s~eea~~~a~~lg---~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~ 76 (387)
T COG0045 19 VPPGYVATSPEEAEEAAKELG---GGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEI 76 (387)
T ss_pred CCCceeeeCHHHHHHHHHHhC---CCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHH
Confidence 4666665 677877777774 4589999964 55655 899999999998887643
No 114
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=24.33 E-value=58 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.2
Q ss_pred EEEEEEEecC-CccEEEEEeecCC
Q psy16684 309 LFGFDILLQD-NLNVCLLEANAAP 331 (429)
Q Consensus 309 l~G~D~liD~-~~kpWLLEVN~~P 331 (429)
-.|+||.+.. ++...+|||=+.-
T Consensus 28 ~~gyDi~~~~~~g~~~~IEVKst~ 51 (91)
T PF13020_consen 28 GLGYDIKSFDEDGEERFIEVKSTT 51 (91)
T ss_pred CCCeEEEEEeCCCCEEEEEEEEEe
Confidence 3699999987 8999999999866
No 115
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=23.82 E-value=68 Score=33.30 Aligned_cols=26 Identities=38% Similarity=0.719 Sum_probs=21.5
Q ss_pred EEEE-EEEEecCCccEEEEEeec-CCCC
Q psy16684 308 ELFG-FDILLQDNLNVCLLEANA-APSM 333 (429)
Q Consensus 308 el~G-~D~liD~~~kpWLLEVN~-~Psl 333 (429)
.+|| |||..|.++.+-|||.|+ .|..
T Consensus 106 slyGRfDfa~dg~g~~KllE~NADTPT~ 133 (397)
T PHA02117 106 GLYGRFDLIMTPNGGPKMLEYNADTPTI 133 (397)
T ss_pred cEEEEEEEEEcCCCCeEEEEecCCCCch
Confidence 4665 999999999999999999 3554
No 116
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=22.65 E-value=3.4e+02 Score=25.92 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=24.5
Q ss_pred ceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 306 CFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 306 ~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.|....+|+... ++++++=|+-..|+-..
T Consensus 194 ~f~fvRVDlY~~-~~~iyFGElTf~p~~G~ 222 (239)
T PF14305_consen 194 GFPFVRVDLYNV-DGKIYFGELTFTPGAGF 222 (239)
T ss_pred CCCEEEEEEEEe-CCcEEEEeeecCCCCcC
Confidence 477889999886 55799999999999773
No 117
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=22.01 E-value=2.6e+02 Score=28.62 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=32.7
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCC----CEEEecCchHHHHHhhc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGR----GILLFKKLSEFEEWREN 158 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~----GI~l~~~~~~i~~~~~~ 158 (429)
.|++... ++|.....++.. +..+++||.....|+ ||.+.++.+++.+....
T Consensus 19 vp~~~~~~~~~ea~~~a~~i~---g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~ 75 (388)
T PRK00696 19 VPRGIVATTPEEAVEAAEELG---GGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQ 75 (388)
T ss_pred CCCCeeeCCHHHHHHHHHHcC---CCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHH
Confidence 3444444 466666665541 337899997533333 99999888888877654
No 118
>PF13635 DUF4143: Domain of unknown function (DUF4143)
Probab=20.97 E-value=93 Score=24.63 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=16.9
Q ss_pred EEEEEecCCccEEEEEeec
Q psy16684 311 GFDILLQDNLNVCLLEANA 329 (429)
Q Consensus 311 G~D~liD~~~kpWLLEVN~ 329 (429)
-+||++...++.+.|||-+
T Consensus 71 EVDfv~~~~~~~~~IEVK~ 89 (90)
T PF13635_consen 71 EVDFVIENGGRIIPIEVKY 89 (90)
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 5799999889999999965
Done!