Query psy16684
Match_columns 429
No_of_seqs 287 out of 1541
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 19:21:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 4.4E-70 1.5E-74 548.0 25.0 303 18-357 18-359 (380)
2 4fu0_A D-alanine--D-alanine li 99.2 2.7E-10 9.2E-15 114.0 16.9 165 127-355 177-347 (357)
3 4eg0_A D-alanine--D-alanine li 99.2 6.5E-10 2.2E-14 109.1 17.3 169 105-339 122-292 (317)
4 3se7_A VANA; alpha-beta struct 99.1 6.7E-10 2.3E-14 110.5 16.2 152 127-339 165-318 (346)
5 1iow_A DD-ligase, DDLB, D-ALA\ 99.1 1.2E-09 4.2E-14 105.7 17.4 163 105-338 111-282 (306)
6 3i12_A D-alanine-D-alanine lig 99.1 2.8E-09 9.5E-14 106.9 18.0 168 105-339 155-328 (364)
7 2i87_A D-alanine-D-alanine lig 99.1 4.5E-09 1.6E-13 105.1 19.0 166 105-338 144-318 (364)
8 2q7d_A Inositol-tetrakisphosph 99.1 5.7E-09 2E-13 104.1 19.5 207 60-338 101-318 (346)
9 3k3p_A D-alanine--D-alanine li 99.1 1.3E-09 4.6E-14 110.1 14.5 167 105-339 177-349 (383)
10 3e5n_A D-alanine-D-alanine lig 99.1 3.7E-09 1.3E-13 106.9 17.1 167 105-339 174-347 (386)
11 1e4e_A Vancomycin/teicoplanin 99.0 6.4E-09 2.2E-13 103.1 18.4 153 127-338 165-317 (343)
12 3tqt_A D-alanine--D-alanine li 99.0 2.4E-09 8.3E-14 107.8 15.0 148 128-339 180-329 (372)
13 1i7n_A Synapsin II; synapse, p 99.0 5.8E-10 2E-14 109.4 9.9 146 126-348 151-299 (309)
14 1pk8_A RAT synapsin I; ATP bin 99.0 9.2E-10 3.1E-14 111.6 9.8 147 126-349 263-412 (422)
15 2p0a_A Synapsin-3, synapsin II 99.0 1.1E-09 3.6E-14 109.0 9.0 151 127-354 169-323 (344)
16 1ehi_A LMDDL2, D-alanine:D-lac 98.9 2.7E-08 9.3E-13 100.1 18.3 169 105-337 150-327 (377)
17 3r5x_A D-alanine--D-alanine li 98.9 6.4E-09 2.2E-13 101.0 12.9 162 105-339 112-276 (307)
18 2fb9_A D-alanine:D-alanine lig 98.9 1.1E-08 3.8E-13 100.7 14.0 147 127-338 150-297 (322)
19 1z2n_X Inositol 1,3,4-trisphos 98.9 1.5E-08 5.2E-13 99.1 13.8 72 105-207 113-189 (324)
20 3lwb_A D-alanine--D-alanine li 98.8 2.2E-08 7.4E-13 100.8 13.8 148 128-338 189-342 (373)
21 1uc8_A LYSX, lysine biosynthes 98.8 2.7E-09 9.2E-14 101.7 6.3 154 105-335 103-258 (280)
22 2r85_A PURP protein PF1517; AT 98.8 1.4E-08 4.7E-13 99.4 9.7 51 281-334 241-291 (334)
23 2pvp_A D-alanine-D-alanine lig 98.8 1.8E-08 6.3E-13 101.2 10.7 159 127-354 185-346 (367)
24 1gsa_A Glutathione synthetase; 98.8 3.2E-08 1.1E-12 95.7 11.0 78 104-206 134-214 (316)
25 3q2o_A Phosphoribosylaminoimid 98.7 1.6E-07 5.5E-12 94.6 16.2 150 105-336 127-284 (389)
26 3k5i_A Phosphoribosyl-aminoimi 98.7 2.8E-07 9.7E-12 93.5 16.8 152 105-334 138-295 (403)
27 4e4t_A Phosphoribosylaminoimid 98.6 3.4E-07 1.2E-11 93.5 15.1 150 105-335 148-308 (419)
28 4dim_A Phosphoribosylglycinami 98.6 2.8E-07 9.4E-12 93.0 13.5 158 105-334 124-283 (403)
29 3ax6_A Phosphoribosylaminoimid 98.6 8E-07 2.7E-11 89.0 15.5 149 105-335 115-266 (380)
30 3ouz_A Biotin carboxylase; str 98.6 1.3E-06 4.3E-11 89.6 17.3 162 105-334 134-300 (446)
31 3orq_A N5-carboxyaminoimidazol 98.6 9.3E-07 3.2E-11 88.8 15.6 146 105-334 125-278 (377)
32 3ln6_A Glutathione biosynthesi 98.6 8.1E-08 2.8E-12 104.8 8.3 76 105-207 499-579 (750)
33 2yw2_A Phosphoribosylamine--gl 98.6 3.7E-07 1.3E-11 92.8 12.5 71 105-189 117-189 (424)
34 2ip4_A PURD, phosphoribosylami 98.5 2.3E-06 8E-11 86.7 17.8 78 105-208 116-195 (417)
35 3mjf_A Phosphoribosylamine--gl 98.5 7.5E-07 2.6E-11 91.2 13.3 193 105-355 122-318 (431)
36 1kjq_A GART 2, phosphoribosylg 98.5 1.2E-06 4.2E-11 87.7 14.6 156 105-334 128-286 (391)
37 3aw8_A PURK, phosphoribosylami 98.5 2.2E-06 7.5E-11 85.4 16.2 155 105-337 111-269 (369)
38 2z04_A Phosphoribosylaminoimid 98.5 4.2E-07 1.4E-11 90.4 10.9 152 105-336 107-260 (365)
39 2yrx_A Phosphoribosylglycinami 98.5 2E-06 7E-11 88.2 16.3 82 105-208 138-221 (451)
40 1ulz_A Pyruvate carboxylase N- 98.5 2.1E-06 7.2E-11 87.9 16.0 163 105-334 129-295 (451)
41 2vpq_A Acetyl-COA carboxylase; 98.5 2.6E-06 8.9E-11 87.3 16.6 155 112-334 140-296 (451)
42 3vot_A L-amino acid ligase, BL 98.5 5.7E-07 1.9E-11 91.5 11.4 151 127-335 145-295 (425)
43 3lp8_A Phosphoribosylamine-gly 98.4 1.3E-06 4.3E-11 89.8 13.2 71 105-189 138-210 (442)
44 2xcl_A Phosphoribosylamine--gl 98.4 2E-06 6.9E-11 87.3 13.6 82 105-208 117-200 (422)
45 3ln7_A Glutathione biosynthesi 98.4 6.7E-07 2.3E-11 97.5 10.3 78 105-207 504-585 (757)
46 2dwc_A PH0318, 433AA long hypo 98.4 3.9E-06 1.3E-10 85.5 15.4 160 105-334 136-299 (433)
47 1vkz_A Phosphoribosylamine--gl 98.4 2.5E-06 8.5E-11 86.6 13.9 171 105-335 121-294 (412)
48 2pn1_A Carbamoylphosphate synt 98.4 2.4E-06 8.3E-11 83.5 12.6 71 105-203 129-199 (331)
49 2qk4_A Trifunctional purine bi 98.3 6.7E-06 2.3E-10 84.3 15.5 81 105-207 143-226 (452)
50 2w70_A Biotin carboxylase; lig 98.3 7.3E-06 2.5E-10 83.8 14.5 155 112-334 141-296 (449)
51 3vmm_A Alanine-anticapsin liga 98.3 1.1E-05 3.6E-10 83.7 15.1 79 105-191 154-234 (474)
52 3glk_A Acetyl-COA carboxylase 98.2 8.6E-06 2.9E-10 85.8 13.3 150 113-334 218-368 (540)
53 2dzd_A Pyruvate carboxylase; b 98.2 3.7E-05 1.3E-09 78.9 17.6 154 112-333 146-299 (461)
54 3jrx_A Acetyl-COA carboxylase 98.2 1.5E-05 5E-10 84.7 14.8 150 113-334 234-384 (587)
55 3t7a_A Inositol pyrophosphate 98.1 6.9E-06 2.4E-10 79.6 9.4 210 56-352 78-310 (330)
56 1w96_A ACC, acetyl-coenzyme A 98.1 3E-05 1E-09 81.8 14.8 150 113-334 224-375 (554)
57 3eth_A Phosphoribosylaminoimid 98.1 7.6E-05 2.6E-09 74.4 16.2 144 106-336 95-248 (355)
58 1a9x_A Carbamoyl phosphate syn 98.1 4.7E-05 1.6E-09 86.4 16.4 158 105-333 689-848 (1073)
59 3df7_A Putative ATP-grAsp supe 98.1 5.8E-06 2E-10 80.7 7.6 46 281-335 208-253 (305)
60 3u9t_A MCC alpha, methylcroton 98.1 1.2E-05 4.2E-10 86.8 10.9 155 112-334 167-322 (675)
61 3n6r_A Propionyl-COA carboxyla 97.9 1.5E-05 5.1E-10 86.2 6.8 173 113-355 142-316 (681)
62 1a9x_A Carbamoyl phosphate syn 97.9 0.00015 5E-09 82.3 15.2 158 105-332 143-305 (1073)
63 2qf7_A Pyruvate carboxylase pr 97.6 0.00013 4.5E-09 83.2 10.3 154 113-334 161-316 (1165)
64 3hbl_A Pyruvate carboxylase; T 97.6 0.00023 8E-09 81.0 11.9 143 127-334 155-298 (1150)
65 2r7k_A 5-formaminoimidazole-4- 97.6 9.8E-05 3.3E-09 73.8 7.7 53 280-334 266-318 (361)
66 3va7_A KLLA0E08119P; carboxyla 97.6 0.00024 8.2E-09 81.3 11.8 141 128-333 181-324 (1236)
67 3n6x_A Putative glutathionylsp 97.5 7.8E-05 2.7E-09 76.7 5.8 135 63-229 309-453 (474)
68 4ffl_A PYLC; amino acid, biosy 97.5 0.0004 1.4E-08 68.7 10.9 40 127-189 125-164 (363)
69 2pbz_A Hypothetical protein; N 97.4 0.00038 1.3E-08 68.3 8.3 49 281-333 223-271 (320)
70 2cqy_A Propionyl-COA carboxyla 96.7 0.0019 6.4E-08 51.9 5.1 72 105-190 23-98 (108)
71 2io8_A Bifunctional glutathion 92.9 0.13 4.4E-06 54.7 6.4 90 63-192 486-575 (619)
72 2vob_A Trypanothione synthetas 86.6 0.39 1.3E-05 51.3 3.7 67 103-196 527-593 (652)
73 1wr2_A Hypothetical protein PH 85.3 0.59 2E-05 43.1 3.8 75 105-190 36-118 (238)
74 3k1t_A Glutamate--cysteine lig 69.8 10 0.00035 37.7 7.3 109 125-248 275-383 (432)
75 2fp4_B Succinyl-COA ligase [GD 68.9 11 0.00038 37.5 7.7 78 105-189 19-110 (395)
76 3ufx_B Succinyl-COA synthetase 53.1 20 0.00069 35.6 6.2 71 105-189 19-95 (397)
77 2nu8_B SCS-beta, succinyl-COA 45.6 29 0.00099 34.3 6.0 76 106-189 20-103 (388)
78 3n6x_A Putative glutathionylsp 42.7 17 0.0006 37.0 3.9 28 306-333 141-169 (474)
79 4e9m_A Nucleotide-binding olig 36.8 4.7 0.00016 34.3 -1.2 19 319-337 105-123 (144)
80 1kut_A Phosphoribosylaminoimid 25.7 1.3E+02 0.0046 27.4 6.5 53 280-334 139-192 (230)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=4.4e-70 Score=547.98 Aligned_cols=303 Identities=27% Similarity=0.476 Sum_probs=231.3
Q ss_pred hHHHHHHhcCCC-cEEecCCCCceEEEecccCcch-HHHHhhcCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCC
Q psy16684 18 TVIEDVLRGRPG-WMPVGSDDTNWDIFWCDLATTK-LILESSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGN 95 (429)
Q Consensus 18 ~li~~~l~~r~g-w~e~~~~~~~~d~~W~~~~~~~-~~~~~~l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~ 95 (429)
++|+++|.++ | |.|+.+++.+||++|++..... ..+.....++|+||||||+++||||+.|+++|++++ .+.
T Consensus 18 ~~V~~vL~~~-g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~---- 91 (380)
T 3tig_A 18 AEVAKILLAS-GQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT---- 91 (380)
T ss_dssp HHHHHHHHHT-TSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH----
T ss_pred HHHHHHHHhc-CCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcc----
Confidence 6799999999 6 9999876788999999865321 111111367899999999999999999999999953 332
Q ss_pred CcccccCCcccceeec-ch-----------------------hHHHHHHHHhc----CCCceEEEcCCCCCCCCCEEEec
Q psy16684 96 TEEAELSNAMPMTFEI-PS-----------------------ETALFLQEARR----DSHNMWIVKPSGGSQGRGILLFK 147 (429)
Q Consensus 96 ~~~~~~~~f~P~T~~L-p~-----------------------e~~~f~~~~~~----~~~~~wI~KP~~~s~G~GI~l~~ 147 (429)
..++|+|+||.| |. |+.+|+++|++ +++++||+||+++++|+||++++
T Consensus 92 ----~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~ 167 (380)
T 3tig_A 92 ----ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISS 167 (380)
T ss_dssp ----TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCS
T ss_pred ----cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeC
Confidence 358999999999 75 45689999974 46789999999999999999999
Q ss_pred CchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcccc--CCceeeeEEEEEEeeecCCeEEEEcceEEEE
Q psy16684 148 KLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLL--EGRKFDMRMYVLVTSFSPLTVWIARDGFARI 225 (429)
Q Consensus 148 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi--~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~ 225 (429)
+++++.++.+. ....+|||+||++|+|| +|||||||+|||||| ||++|+|++|++||
T Consensus 168 ~~~~i~~~~~~-------------------~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rf 226 (380)
T 3tig_A 168 DATELLDFIDN-------------------QGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRT 226 (380)
T ss_dssp CSHHHHHHHHH-------------------HTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEE
T ss_pred CHHHHHHHHhc-------------------cCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEe
Confidence 99999888742 23579999999999999 999999999999999 99999999999999
Q ss_pred cCcCCCCCCccCccccccccccccc-CCCc---CCCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16684 226 AGIKYCKDNFADNCMHLTNTAIQLS-GENL---SQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMM 301 (429)
Q Consensus 226 a~~~y~~~~~~~~~~HLTN~siqk~-~~~y---~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~ 301 (429)
|+++|+.++++|.++||||+++||+ +++| +.|++|++++|++||.+.++.+..+.|+++|++++++++.++++.+.
T Consensus 227 a~~~y~~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~ 306 (380)
T 3tig_A 227 SSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAIS 306 (380)
T ss_dssp CC----------------------------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCcCccchhhhhhhccccccccccccccccccCCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999996 5667 57899999999999987667666679999999999999999998876
Q ss_pred CC---CcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhcccC
Q psy16684 302 GN---KHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDL 357 (429)
Q Consensus 302 ~~---~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~lv~~ 357 (429)
.. .+|||+||+|||||++++|||||||++|+++. .+.++|++++++++..
T Consensus 307 ~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavd 359 (380)
T 3tig_A 307 TKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAIS 359 (380)
T ss_dssp CTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTT
T ss_pred hcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcc
Confidence 53 58999999999999999999999999999975 3778899999998653
No 2
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.21 E-value=2.7e-10 Score=113.99 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=101.3
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|+||.++++.+++....... ......+++|+||+ |+.+.+ -|+
T Consensus 177 g~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a----------------~~~~~~vlvE~~i~------G~e~~v--~vl 232 (357)
T 4fu0_A 177 TYPLFIKPVRAGSSFGITKVIEKQELDAAIELA----------------FEHDTEVIVEETIN------GFEVGC--AVL 232 (357)
T ss_dssp CSSEEEEETTCSSSTTCEEESSHHHHHHHHHHH----------------TTTCSEEEEEECCC------SEEEEE--EEE
T ss_pred CCCEEEEECCCCCCCceEEeccHHhHHHHHHHH----------------hccCCeEEEEEecC------CEEEEE--EEE
Confidence 457999999999999999999999998776542 12345789999996 665544 334
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
.... .. +..-+.......-|+.. ..|..+..-. ..+....+.+.++|+
T Consensus 233 ~~~~--~~--~~~v~~~~~~~~~~d~~------------------~k~~~~~~~~----------~~pa~l~~~~~~~i~ 280 (357)
T 4fu0_A 233 GIDE--LI--VGRVDEIELSSGFFDYT------------------EKYTLKSSKI----------YMPARIDAEAEKRIQ 280 (357)
T ss_dssp ESSS--EE--ECCCEEEEECHHHHTSC------------------SBCSSCCEEE----------ESSCSCCHHHHHHHH
T ss_pred ecCC--ce--EEEEEEEEccccccccc------------------ccccCCCceE----------ecCCCCCHHHHHHHH
Confidence 3321 00 00111111111111100 0000000000 011222345667788
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHH------HHHHHHHHhcc
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLK------YNLIQDALNVI 355 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk------~~li~d~l~lv 355 (429)
+++.+++.++ +|-.+.++||++|+++++|+||||+.|+|+..+-.....+ .+|++.++.+.
T Consensus 281 ~~A~~~~~aL--------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a 347 (357)
T 4fu0_A 281 EAAVTIYKAL--------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLIGLY 347 (357)
T ss_dssp HHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 8887777765 3668899999999999999999999999998775433322 46777776664
No 3
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.17 E-value=6.5e-10 Score=109.06 Aligned_cols=169 Identities=17% Similarity=0.171 Sum_probs=94.9
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+|+.+. ++...+.++....-+-.+|+||..++.|+||.++++.+++.+.++.. ......+
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~----------------~~~~~~~ 185 (317)
T 4eg0_A 122 TPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEA----------------ATHDKIV 185 (317)
T ss_dssp CCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHH----------------TTTCSEE
T ss_pred CCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH----------------HhCCCeE
Confidence 57777763 45656552211111336899999999999999999999988776532 1134679
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+. |+ ++++.|+....-|.......+++..+.. +|. .+...|.
T Consensus 186 lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~~~~~~~-k~~----~g~~~~~-------------------- 233 (317)
T 4eg0_A 186 IVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGEFYDYHA-KYV----ANDTQYL-------------------- 233 (317)
T ss_dssp EEEECCCS-----SE--EEEEEEETTCCCCCEEEEC--------------------CEEE--------------------
T ss_pred EEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCceechhh-ccc----CCCeeEE--------------------
Confidence 99999983 43 6666666443222211111111111000 000 0000000
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
.+....+.+.++|.+++.+++.++ +|....++||++|++++||+||||+.|+++..+..
T Consensus 234 ----------~P~~l~~~~~~~l~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 234 ----------IPCGLPAEQETELKRIARRAFDVL--------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp ----------SSCSSCHHHHHHHHHHHHHHHHTT--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHH
T ss_pred ----------cCCCCCHHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 011112344556666666666554 35568899999999999999999999999987654
No 4
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.14 E-value=6.7e-10 Score=110.51 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=91.5
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|+||.++++.+++...++.. ......++||+||+ |+ ++++.|+
T Consensus 165 g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~----------------~~~~~~vlvEe~I~------G~--E~~v~vl 220 (346)
T 3se7_A 165 TYPVFVKPARSGSSFGVSKVAREEDLQGAVEAA----------------REYDSKVLIEEAVI------GT--EIGCAVM 220 (346)
T ss_dssp CSSEEEEESSCCTTTTCEEECSHHHHHHHHHHH----------------TTTCSEEEEEECCC------SE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCcCEEEECCHHHHHHHHHHH----------------HhCCCcEEEEeCcC------CE--EEEEEEE
Confidence 447999999999999999999999988776532 11346799999997 54 6777777
Q ss_pred EeeecCCeEEEEcceEEEEcC--cCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAG--IKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQK 284 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~--~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~ 284 (429)
...-. ...+ ...+... .-|+. .|.....|..|..-. ..+....+.+.++
T Consensus 221 ~~~~~---~~~~--~~~e~~~~~~~~d~--------------~q~~~~ky~~~~~~~----------~~pa~l~~~~~~~ 271 (346)
T 3se7_A 221 GNGPE---LITG--EVDQITLSHGFFKI--------------HQESTPESGSDNSAV----------TVPADISTTSRSL 271 (346)
T ss_dssp EETTE---EEEC--CCEEECCC----------------------------CGGGSCE----------ESSCCCCHHHHHH
T ss_pred ecCCC---eEEE--eeEEEecCCCCcCc--------------ccchhccccCCCeeE----------EeCCCCCHHHHHH
Confidence 65311 1111 1111111 00000 000000000000000 0111122445567
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 285 IAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 285 I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
|.+++.+++.++ +|...+++||++|++++||+||||+.|+++..+..
T Consensus 272 i~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 272 VQDTAKAVYRAL--------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp HHHHHHHHHHHH--------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHHh--------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 777777776665 35588999999999999999999999999887643
No 5
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.14 E-value=1.2e-09 Score=105.69 Aligned_cols=163 Identities=16% Similarity=0.142 Sum_probs=97.5
Q ss_pred ccceeecch-hHHH--------HHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCc
Q psy16684 105 MPMTFEIPS-ETAL--------FLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDI 175 (429)
Q Consensus 105 ~P~T~~Lp~-e~~~--------f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (429)
.|+|+.+.+ ++.. +.+. -+..+|+||..++.|+||.++++.+++....+..
T Consensus 111 ~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~---------------- 170 (306)
T 1iow_A 111 VAPWVALTRAEFEKGLSDKQLAEISA----LGLPVIVKPSREGSSVGMSKVVAENALQDALRLA---------------- 170 (306)
T ss_dssp BCCEEEEEHHHHHHCCCTHHHHHHHT----TCSSEEEEETTCCTTTTCEEESSGGGHHHHHHHH----------------
T ss_pred CCCeEEEchhhhhccchhhhhhHHhc----cCCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHH----------------
Confidence 688887754 3333 3332 2347999999999999999999999988776532
Q ss_pred ccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcC
Q psy16684 176 ELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLS 255 (429)
Q Consensus 176 ~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~ 255 (429)
......++||+||+ |+ ++|+.++ .+ +++ +.++..... .+ +..-+|+.
T Consensus 171 ~~~~~~~lvee~i~------g~--e~~v~~~-~g----~~~----~~~~~~~~~----~~---~~~~~~~~--------- 217 (306)
T 1iow_A 171 FQHDEEVLIEKWLS------GP--EFTVAIL-GE----EIL----PSIRIQPSG----TF---YDYEAKFL--------- 217 (306)
T ss_dssp TTTCSEEEEEECCC------CC--EEEEEEE-TT----EEC----CCEEEECSS----SS---SCHHHHHT---------
T ss_pred HhhCCCEEEEeCcC------CE--EEEEEEE-CC----Ccc----ceEEEEeCC----Ce---Echhheec---------
Confidence 11246899999998 44 6777766 21 110 111111110 00 00001111
Q ss_pred CCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 256 QGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 256 ~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.|..-.. .+....+.+.++|.+++.+++.++ ++...+++||++|++++||+||||+.|+.+.
T Consensus 218 ~g~~~~~----------~p~~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~ 279 (306)
T 1iow_A 218 SDETQYF----------CPAGLEASQEANLQALVLKAWTTL--------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTS 279 (306)
T ss_dssp CSCCEEE----------SSCCCCHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEECTTSCEEEEEEESSCCCST
T ss_pred CCCeeEE----------cCCCCCHHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEcCCCCEEEEEecCCCCCCC
Confidence 0100000 011112344556666666666554 2456889999999999999999999999987
Q ss_pred CCh
Q psy16684 336 TDD 338 (429)
Q Consensus 336 ~~~ 338 (429)
.+.
T Consensus 280 ~s~ 282 (306)
T 1iow_A 280 HSL 282 (306)
T ss_dssp TCH
T ss_pred CCH
Confidence 643
No 6
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.09 E-value=2.8e-09 Score=106.91 Aligned_cols=168 Identities=17% Similarity=0.194 Sum_probs=101.1
Q ss_pred ccceeecc--h----hHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccC
Q psy16684 105 MPMTFEIP--S----ETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELI 178 (429)
Q Consensus 105 ~P~T~~Lp--~----e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
.|++..+. + ++..+.+++. -.+|+||..++.|.||.++++.+++...++.. ...
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~lg----~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a----------------~~~ 214 (364)
T 3i12_A 155 IAPFITLTRTNRHAFSFAEVESRLG----LPLFVKPANQGSSVGVSKVANEAQYQQAVALA----------------FEF 214 (364)
T ss_dssp BCCEEEEETTTGGGCCHHHHHHHHC----SSEEEEETTCCTTTTCEEESSHHHHHHHHHHH----------------HHH
T ss_pred CCCEEEEEccccchhhHHHHHHhcC----CCEEEEECCCCCCcCeEEeCCHHHHHHHHHHH----------------Hhc
Confidence 45666653 2 5566666553 36899999999999999999999988766431 112
Q ss_pred ccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCC
Q psy16684 179 PEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGR 258 (429)
Q Consensus 179 ~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~ 258 (429)
...++||+||+ |+ ++++-|+.... ..+ ..-|-+.....-|+.. ..+ ..+. +.
T Consensus 215 ~~~vlVEe~I~------G~--E~~v~vl~~~~--~~~--~~~~ei~~~~~~~~~~---~ky--~~~~-----------~~ 266 (364)
T 3i12_A 215 DHKVVVEQGIK------GR--EIECAVLGNDN--PQA--STCGEIVLNSEFYAYD---TKY--IDDN-----------GA 266 (364)
T ss_dssp CSEEEEEECCC------SE--EEEEEEEESSS--CEE--EEEEEEECCTTCC--T---TTT--SGGG-----------GC
T ss_pred CCcEEEEcCcC------Ce--EEEEEEEeCCC--ceE--eeeEEEecCCCccCHH---Hcc--cCCC-----------ce
Confidence 45799999997 64 56666665431 111 1111121111111110 000 0000 00
Q ss_pred ccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 259 KWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 259 ~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
. . ..+....+.+.++|++++.+++.++ +|....++||++|++++||++|||+.|+++..+.
T Consensus 267 ~-~----------~~Pa~l~~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~ 327 (364)
T 3i12_A 267 Q-V----------VVPAQIPSEVNDKIRAIAIQAYQTL--------GCAGMARVDVFLTADNEVVINEINTLPGFTNISM 327 (364)
T ss_dssp E-E----------ESSCSSCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred E-E----------EeCCCCCHHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCH
Confidence 0 0 0011122345566777777766665 3668899999999999999999999999998764
Q ss_pred h
Q psy16684 339 H 339 (429)
Q Consensus 339 ~ 339 (429)
.
T Consensus 328 ~ 328 (364)
T 3i12_A 328 Y 328 (364)
T ss_dssp H
T ss_pred H
Confidence 3
No 7
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.08 E-value=4.5e-09 Score=105.13 Aligned_cols=166 Identities=16% Similarity=0.168 Sum_probs=99.2
Q ss_pred ccceeecchh---------HHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCc
Q psy16684 105 MPMTFEIPSE---------TALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDI 175 (429)
Q Consensus 105 ~P~T~~Lp~e---------~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (429)
.|+|+.+... +..+.+.. +-.+|+||..++.|+||.++++.+++...++..
T Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~~~----g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~---------------- 203 (364)
T 2i87_A 144 QLPYISFLRSEYEKYEHNILKLVNDKL----NYPVFVKPANLGSSVGISKCNNEAELKEGIKEA---------------- 203 (364)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHHHHHC----CSSEEEEESSCSSCTTCEEESSHHHHHHHHHHH----------------
T ss_pred CCCEEEEechhhcccchhHHHHHHHhc----CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH----------------
Confidence 5777777432 33333332 347999999999999999999999988776432
Q ss_pred ccCccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcC
Q psy16684 176 ELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLS 255 (429)
Q Consensus 176 ~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~ 255 (429)
......++||+||+ |+ ++++.|+... ++ . +...|-+.....-|+.. .+ |.
T Consensus 204 ~~~~~~~lvEe~I~------G~--E~~v~vl~~~-~~-~--~~~~~e~~~~~~~~~~~---------~k---------~~ 253 (364)
T 2i87_A 204 FQFDRKLVIEQGVN------AR--EIEVAVLGND-YP-E--ATWPGEVVKDVAFYDYK---------SK---------YK 253 (364)
T ss_dssp HTTCSEEEEEECCC------CE--EEEEEEEESS-SC-E--ECCCEEECCSCCC--------------------------
T ss_pred HhcCCeEEEEeCcc------Ce--EEEEEEEcCC-Cc-E--EeeeEEEecCCCcCCHH---------Hc---------cc
Confidence 11246799999998 54 6777777653 11 0 11111111100001000 00 00
Q ss_pred CCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 256 QGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 256 ~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.|..-. ..+....+.+.++|++++.+++.++ +|...+++||++|++++|||||||+.|+++.
T Consensus 254 ~g~~~~----------~~pa~l~~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~ 315 (364)
T 2i87_A 254 DGKVQL----------QIPADLDEDVQLTLRNMALEAFKAT--------DCSGLVRADFFVTEDNQIYINETNAMPGFTA 315 (364)
T ss_dssp ---CCE----------ESSCSSCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred CCCeeE----------EeCCCCCHHHHHHHHHHHHHHHHHc--------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCc
Confidence 000000 0011122345567777777777665 2558899999999999999999999999987
Q ss_pred CCh
Q psy16684 336 TDD 338 (429)
Q Consensus 336 ~~~ 338 (429)
.+.
T Consensus 316 ~s~ 318 (364)
T 2i87_A 316 FSM 318 (364)
T ss_dssp TSH
T ss_pred hhH
Confidence 653
No 8
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.08 E-value=5.7e-09 Score=104.11 Aligned_cols=207 Identities=14% Similarity=0.170 Sum_probs=117.8
Q ss_pred CCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecch----hHHHHHHHHhcCCCceEEEcCC
Q psy16684 60 NHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPS----ETALFLQEARRDSHNMWIVKPS 135 (429)
Q Consensus 60 ~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~----e~~~f~~~~~~~~~~~wI~KP~ 135 (429)
.--.+|-+.....+..|..+.+.|.+..-.. ... -=-.|+|+.+.+ +....++... .+-..|+||.
T Consensus 101 gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~-~~~-------gIp~P~t~~~~~~~~~~~~~~~~~~~--lg~P~VvKP~ 170 (346)
T 2q7d_A 101 ETIVLDPLPAIRTLLDRSKSYELIRKIEAYM-EDD-------RICSPPFMELTSLCGDDTMRLLEKNG--LTFPFICKTR 170 (346)
T ss_dssp TSEEESCHHHHHHTTBHHHHHHHHHHHHHHH-CBT-------TEECCCEEEECSCCCTTHHHHHHHTT--CCSSEEEECS
T ss_pred CeEEcCCHHHHHHhhhHHHHHHHHHhhcccc-cCC-------CCCCCCEEEEeCCCHHHHHHHHHhcC--CCCCEEEEec
Confidence 3456788888777889999988887743211 100 123799999853 4555544322 2457899998
Q ss_pred C--CCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEEeeecCC
Q psy16684 136 G--GSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPL 213 (429)
Q Consensus 136 ~--~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl 213 (429)
. |+.|+|+.++.+.+++.. ...+++||+||+.+ | .|+|+||+-..
T Consensus 171 ~g~Gs~s~~v~~v~~~~~l~~-----------------------~~~~~lvQefI~~~----G--~dirv~VvG~~---- 217 (346)
T 2q7d_A 171 VAHGTNSHEMAIVFNQEGLNA-----------------------IQPPCVVQNFINHN----A--VLYKVFVVGES---- 217 (346)
T ss_dssp BCSSTTCCEEEEECSGGGTTC-------------------------CCEEEEECCCCT----T--EEEEEEEETTE----
T ss_pred CCCcceeeeeEEecCHHHHHh-----------------------cCCCEEEEEeeCCC----C--eEEEEEEECCE----
Confidence 5 455899999998776532 23569999999852 4 69999997433
Q ss_pred eEEEEcceEEEEcCcCCCCCCcc----CcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHHHHH
Q psy16684 214 TVWIARDGFARIAGIKYCKDNFA----DNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVV 289 (429)
Q Consensus 214 ~~y~y~~g~~R~a~~~y~~~~~~----~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii 289 (429)
+. +..|.+...+...... +..+| |++. .|..-.+..+.. ......... -+++++++
T Consensus 218 -v~----~~~r~sl~~~~~~~~~~~~~~f~s~--~~~~--------~g~~~~~~~~~~-~~~~~~~~~----~~el~~lA 277 (346)
T 2q7d_A 218 -YT----VVQRPSLKNFSAGTSDRESIFFNSH--NVSK--------PESSSVLTELDK-IEGVFERPS----DEVIRELS 277 (346)
T ss_dssp -EE----EEEEECCCCCC----CCCCEEEEGG--GTSS--------TTCCCGGGCCSC-CCSCCCCCC----HHHHHHHH
T ss_pred -EE----EEEEecCCCcCcCccccccccccce--eecc--------CCcccccccccc-ccccccCCC----hHHHHHHH
Confidence 21 1345444333211000 00011 1100 111000000000 000000000 23566666
Q ss_pred HHHHHHHHhhhcCCCcceEEEEEEEEecC-CccEEEEEeecCCCCCCCCh
Q psy16684 290 ITALKSVECIMMGNKHCFELFGFDILLQD-NLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 290 ~~~l~s~~~~~~~~~~~Fel~G~D~liD~-~~kpWLLEVN~~Psl~~~~~ 338 (429)
.++..++ ...++|+||++|+ +++||+||||+.|+++....
T Consensus 278 ~~a~~al---------Gl~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~~ 318 (346)
T 2q7d_A 278 RALRQAL---------GVSLFGIDIIINNQTGQHAVIDINAFPGYEGVSE 318 (346)
T ss_dssp HHHHHHH---------CCCEEEEEEEECTTTCCEEEEEEEESCCCTTCTT
T ss_pred HHHHHHh---------CCceEeeEEEeecCCCCEEEEEEeCCccccccch
Confidence 6666655 3458899999997 78999999999999998754
No 9
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.06 E-value=1.3e-09 Score=110.15 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=90.5
Q ss_pred ccceeecch------hHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccC
Q psy16684 105 MPMTFEIPS------ETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELI 178 (429)
Q Consensus 105 ~P~T~~Lp~------e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
.|+++.+.. ++..+.+.+ +-.+|+||..++.|.||.++++.+++...++.. ...
T Consensus 177 vp~~~~~~~~~~~~~~~~~~~~~l----g~PvvVKP~~ggss~GV~~v~~~~el~~al~~a----------------~~~ 236 (383)
T 3k3p_A 177 QVAYVALIEGEPLESKLAEVEEKL----IYPVFVKPANMGSSVGISKAENRTDLKQAIALA----------------LKY 236 (383)
T ss_dssp BCCEEEEETTSCHHHHHHHHHHHC----CSSEEEEECC------CEEESSHHHHHHHHHHH----------------HHH
T ss_pred CCCEEEEeCccchhHHHHHHHHhc----CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH----------------HhC
Confidence 566766642 333444433 347999999999999999999999988766431 113
Q ss_pred ccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCC
Q psy16684 179 PEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGR 258 (429)
Q Consensus 179 ~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~ 258 (429)
...++||+||+ |+ ++++-|+... ...++.. +-+.....-|+. ... |..|.
T Consensus 237 ~~~vlVEe~I~------G~--E~~v~vl~d~--~~~~~~~--~ei~~~~~~~d~---~~k---------------y~~g~ 286 (383)
T 3k3p_A 237 DSRVLIEQGVD------AR--EIEVGILGNT--DVKTTLP--GEIVKDVAFYDY---EAK---------------YIDNK 286 (383)
T ss_dssp CSEEEEEECCC------SE--EEEEEEEESS--SCEECCC--EEEC----------------------------------
T ss_pred CCeEEEEcCCC------Ce--EEEEEEEeCC--CeeEEee--EEEecCCCccch---hhc---------------ccCCC
Confidence 45799999997 65 4555555432 1211100 000000000000 000 00000
Q ss_pred ccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 259 KWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 259 ~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
... ..+....+.+.++|++++.+++.++ +|-...++||++|++++||+||||+.|+++..+.
T Consensus 287 ~~~----------~~Pa~l~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~ 348 (383)
T 3k3p_A 287 ITM----------AIPAEIDPVIVEKMRDYAATAFRTL--------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSM 348 (383)
T ss_dssp -CE----------ESSCCCCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CH
T ss_pred eeE----------EecCCCCHHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccH
Confidence 000 0111223445667777777766665 3568899999999999999999999999998765
Q ss_pred h
Q psy16684 339 H 339 (429)
Q Consensus 339 ~ 339 (429)
.
T Consensus 349 ~ 349 (383)
T 3k3p_A 349 Y 349 (383)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.05 E-value=3.7e-09 Score=106.93 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=100.1
Q ss_pred ccceeecc--h----hHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccC
Q psy16684 105 MPMTFEIP--S----ETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELI 178 (429)
Q Consensus 105 ~P~T~~Lp--~----e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
.|+++.+. + ++..+.+.+ +-.+|+||..++.|+||.++++.+++...++.. ...
T Consensus 174 ~p~~~~~~~~~~~~~~~~~~~~~l----g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a----------------~~~ 233 (386)
T 3e5n_A 174 VAPFVCFDRHTAAHADVDTLIAQL----GLPLFVKPANQGSSVGVSQVRTADAFAAALALA----------------LAY 233 (386)
T ss_dssp BCCEEEEEHHHHTTCCHHHHHHHH----CSSEEEEESBSCSSTTCEEECSGGGHHHHHHHH----------------TTT
T ss_pred CCCEEEEeCcccchhhHHHHHHhc----CCCEEEEECCCCcCCCEEEECCHHHHHHHHHHH----------------HhC
Confidence 56776664 2 455555554 236899999999999999999999988776532 113
Q ss_pred ccceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCC-
Q psy16684 179 PEVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQG- 257 (429)
Q Consensus 179 ~~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g- 257 (429)
...++||+||+ |+ ++++-|+... ...+.. -|-+.....-|+. +..+.+ .+
T Consensus 234 ~~~vlVEe~I~------G~--E~~v~vl~~~--~~~~~~--~gei~~~~~~~d~---~~ky~~--------------~~~ 284 (386)
T 3e5n_A 234 DHKVLVEAAVA------GR--EIECAVLGNA--VPHASV--CGEVVVHDAFYSY---ATKYIS--------------EHG 284 (386)
T ss_dssp CSEEEEEECCC------SE--EEEEEEECSS--SCEEEE--EEEECC---------------------------------
T ss_pred CCcEEEEcCCC------Ce--EEEEEEEeCC--CceEEE--eEEEEeCCcccch---hcccCC--------------CCC
Confidence 45799999998 53 5555555433 122111 1111111100100 000000 00
Q ss_pred CccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCC
Q psy16684 258 RKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATD 337 (429)
Q Consensus 258 ~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~ 337 (429)
... ..+....+.+.++|++++.+++.++ +|..+.++||++|++++||++|||+.|+++..+
T Consensus 285 ~~~-----------~~Pa~l~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 285 AEI-----------VIPADIDAQTQQRIQQIAVQAYQAL--------GCAGMARVDVFLCADGRIVINEVNTLPGFTRIS 345 (386)
T ss_dssp -CE-----------ESSCSSCHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred eEE-----------EECCCCCHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEECCCcEEEEEeECCCCCCccC
Confidence 000 0111223455667777777776665 356788999999999999999999999999876
Q ss_pred hh
Q psy16684 338 DH 339 (429)
Q Consensus 338 ~~ 339 (429)
-.
T Consensus 346 ~~ 347 (386)
T 3e5n_A 346 VY 347 (386)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 11
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.05 E-value=6.4e-09 Score=103.12 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=92.2
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|+||.++++.+++...++.. ......++||+||+ |+ ++++.|+
T Consensus 165 ~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~----------------~~~~~~~lvEe~I~------G~--E~~v~vl 220 (343)
T 1e4e_A 165 TYPVFVKPARSGSSFGVKKVNSADELDYAIESA----------------RQYDSKILIEQAVS------GC--EVGCAVL 220 (343)
T ss_dssp CSCEEEEESSCCTTTTCEEECSGGGHHHHHHHH----------------TTTCSSEEEEECCC------SE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHH----------------HhcCCcEEEEeCcC------Ce--EEEEEEE
Confidence 347999999999999999999999988776532 11245799999997 65 5666666
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
...-. +....-+-.+....-|+.. +++. +....|..... .+....+.+.++|+
T Consensus 221 ~~~~~---~~~~~~~ei~~~~~~~~~~---------~k~~-----~~~~~g~~~~~----------~p~~l~~~~~~~i~ 273 (343)
T 1e4e_A 221 GNSAA---LVVGEVDQIRLQYGIFRIH---------QEVE-----PEKGSENAVIT----------VPADLSAEERGRIQ 273 (343)
T ss_dssp EETTC---CEECCCEEEEESSSCCCGG---------GSSS-----GGGCCSSEEEC----------SSCSSCHHHHHHHH
T ss_pred eCCCC---eEEeeeEEEeeCCCccCHh---------hccc-----ccCCCCCeeEE----------eCCCCCHHHHHHHH
Confidence 55311 1111111122211111100 0000 00000110000 01111234556677
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
+++.+++.++ +|...+++||++|++++||+||||+.|+++..+.
T Consensus 274 ~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~ 317 (343)
T 1e4e_A 274 ETVKKIYKTL--------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSR 317 (343)
T ss_dssp HHHHHHHHHT--------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTCH
T ss_pred HHHHHHHHHc--------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCcccH
Confidence 7777776665 3568899999999999999999999999987653
No 12
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.04 E-value=2.4e-09 Score=107.81 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=89.8
Q ss_pred ce-EEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 128 NM-WIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 128 ~~-wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
-. +|+||..++.|+||.++++.+++...++.. ......++||+||+ |+ ++++-|+
T Consensus 180 ~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a----------------~~~~~~vlVEe~I~------G~--E~~v~vl 235 (372)
T 3tqt_A 180 TSELFVKAVSLGSSVATLPVKTETEFTKAVKEV----------------FRYDDRLMVEPRIR------GR--EIECAVL 235 (372)
T ss_dssp --CEEEEESSCCSGGGEEEECSHHHHHHHHHHH----------------TTTCSCEEEEECCC------SE--EEEEEEE
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHH----------------HhcCCCEEEECCCC------CE--EEEEEEE
Confidence 36 999999999999999999999988776532 11345799999998 54 5555555
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCC-CccchHHHHHHHHHccccchHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQG-RKWDIQNLRLFLTAMHGREIVDELFQKI 285 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g-~~wsl~~l~~~l~~~~g~~~~~~l~~~I 285 (429)
... . ..+ ..-+-+.....-|+.. ..+. + ++ ... ..+....+.+.++|
T Consensus 236 ~~~-~-~~~--~~~~ei~~~~~~~d~~---~ky~--~------------g~~~~~-----------~~Pa~l~~~~~~~i 283 (372)
T 3tqt_A 236 GNG-A-PKA--SLPGEIIPHHDYYSYD---AKYL--D------------PNGATT-----------TTSVDLSESVTKQI 283 (372)
T ss_dssp ESS-S-CEE--CCCEEEECC--------------------------------CEE-----------ESCCCCCHHHHHHH
T ss_pred eCC-C-ceE--eeeEEEecCCCccchh---hccc--C------------CCceEE-----------EeCCCCCHHHHHHH
Confidence 543 1 111 1111111111111100 0000 0 00 000 01112234556678
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
++++.+++.++ +|..+.++||++|++++|||+|||+.|+|+..+-.
T Consensus 284 ~~~a~~~~~aL--------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 284 QQIAIDAFKMV--------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp HHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHh--------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 88777777665 36688999999999999999999999999987654
No 13
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.03 E-value=5.8e-10 Score=109.45 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=95.0
Q ss_pred CCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEE
Q psy16684 126 SHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYV 205 (429)
Q Consensus 126 ~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyv 205 (429)
.+-..|+||..|++|+|+.++++.+++....+.. ......+++|+||+ + .+|+|++|
T Consensus 151 ~g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~----------------~~~~~~~~vQefI~-~------g~DiRv~V 207 (309)
T 1i7n_A 151 PTFPVVVKIGHAHSGMGKVKVENHYDFQDIASVV----------------ALTQTYATAEPFID-A------KYDIRVQK 207 (309)
T ss_dssp CCSSEEEEESSCSTTTTEEEECSHHHHHHHHHHH----------------HHHTCCEEEEECCC-E------EEEEEEEE
T ss_pred cCCCEEEEeCCCCceeCeEEECCHHHHHHHHHHH----------------hccCCeEEEEeecC-C------CceEEEEE
Confidence 3458999999999999999999998887766421 11235677999998 2 59999998
Q ss_pred EEeeecCCeEEEEcceEEEEcC-cCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHH
Q psy16684 206 LVTSFSPLTVWIARDGFARIAG-IKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQK 284 (429)
Q Consensus 206 Lvts~~Pl~~y~y~~g~~R~a~-~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~ 284 (429)
+-.. + . ++.|-+. ..| -||.+ ++. .. .... -++
T Consensus 208 vGg~-----v---~-a~~Rr~~~g~w-----------rtN~~---------~~~-~e----------~~~l------~~e 241 (309)
T 1i7n_A 208 IGNN-----Y---K-AYMRTSISGNW-----------KTNTG---------SAM-LE----------QIAM------SDR 241 (309)
T ss_dssp ETTE-----E---E-EEEEESSCTTT-----------SCSCC---------CSS-EE----------EECC------CHH
T ss_pred ECCE-----E---E-EEEEEcCCCCC-----------eecCC---------cce-ee----------ecCC------CHH
Confidence 8655 1 1 4566653 222 23321 110 00 0111 123
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeec--CCCCCCCChhhHHHHHHHH
Q psy16684 285 IAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANA--APSMKATDDHDYKLKYNLI 348 (429)
Q Consensus 285 I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~--~Psl~~~~~~d~~lk~~li 348 (429)
.++++.++..+ + ....++|+|++.+.+|++.++|||+ +|++......+......++
T Consensus 242 ~~~la~~A~~a----~----gGldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~i 299 (309)
T 1i7n_A 242 YKLWVDACSEM----F----GGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLV 299 (309)
T ss_dssp HHHHHHHHTTG----G----GCCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----h----CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHH
Confidence 44555444433 2 1378999999999999999999999 9999866555544444433
No 14
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.99 E-value=9.2e-10 Score=111.62 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=96.6
Q ss_pred CCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEE
Q psy16684 126 SHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYV 205 (429)
Q Consensus 126 ~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyv 205 (429)
.+-..|+||..|++|+|+.++++.+++...++.. ......+++|+||+ + .+|||++|
T Consensus 263 ~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~----------------~~~~~~~~vQEfI~-~------g~DIRv~V 319 (422)
T 1pk8_A 263 TTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVV----------------ALTKTYATAEPFID-A------KYDVRVQK 319 (422)
T ss_dssp SSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHH----------------HHHTSCEEEEECCC-E------EEEEEEEE
T ss_pred cCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHH----------------hccCceEEEEeecC-C------CceEEEEE
Confidence 3458899999999999999999998888766421 11234577999998 2 59999998
Q ss_pred EEeeecCCeEEEEcceEEEEcC-cCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHH
Q psy16684 206 LVTSFSPLTVWIARDGFARIAG-IKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQK 284 (429)
Q Consensus 206 Lvts~~Pl~~y~y~~g~~R~a~-~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~ 284 (429)
+-.. + . ++.|.+. ..| -||+. +.+.. ... +-++
T Consensus 320 VGg~-----v---v-a~~Rr~~~g~W-----------rtNvg----------~g~~e----------~i~------lt~e 353 (422)
T 1pk8_A 320 IGQN-----Y---K-AYMRTSVSGNW-----------KTNTG----------SAMLE----------QIA------MSDR 353 (422)
T ss_dssp ETTE-----E---E-EEEEEESSSCS-----------STTSS----------CEEEE----------EEC------CCHH
T ss_pred ECCE-----E---E-EEEEEcCCCCc-----------eeccC----------ceeee----------eeC------CCHH
Confidence 8655 1 1 4566653 222 23321 00000 001 1123
Q ss_pred HHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeec--CCCCCCCChhhHHHHHHHHH
Q psy16684 285 IAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANA--APSMKATDDHDYKLKYNLIQ 349 (429)
Q Consensus 285 I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~--~Psl~~~~~~d~~lk~~li~ 349 (429)
+++++.++..++ ...+++|+|++.++++++.+||||+ +|.+......+......+|-
T Consensus 354 ~~elA~kAaka~--------gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii 412 (422)
T 1pk8_A 354 YKLWVDTCSEIF--------GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV 412 (422)
T ss_dssp HHHHHHHHTTGG--------GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHHHHH
Confidence 455555554443 1478999999999999999999999 99998666555554444333
No 15
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=109.00 Aligned_cols=151 Identities=11% Similarity=0.180 Sum_probs=95.8
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-..|+||..|++|+|+.++++.+++...++.. ......+++|+||+ + .+|+|++|+
T Consensus 169 g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~----------------~~~~~~~~vQefI~-~------g~DiRv~VV 225 (344)
T 2p0a_A 169 HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVV----------------AMAKTYATTEAFID-S------KYDIRIQKI 225 (344)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHH----------------HHHTCCEEEEECCC-E------EEEEEEEEE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHH----------------hccCCeEEEEeccC-C------CccEEEEEE
Confidence 458899999999999999999998887665321 11234577999998 2 599999988
Q ss_pred EeeecCCeEEEEcceEEEEcC-cCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAG-IKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKI 285 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~-~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I 285 (429)
-.. + . ++.|.+. ..| -||.+ +.+.. ... +-+++
T Consensus 226 Gg~-----v---v-a~~R~~~~g~w-----------rtN~~----------~~~~e----------~~~------l~~e~ 259 (344)
T 2p0a_A 226 GSN-----Y---K-AYMRTSISGNW-----------KANTG----------SAMLE----------QVA------MTERY 259 (344)
T ss_dssp TTE-----E---E-EEEEEESSSCS-----------STTSS----------SEEEE----------EEC------CCHHH
T ss_pred CCE-----E---E-EEEEecCCCCC-----------eecCC----------ceEEE----------eeC------CCHHH
Confidence 665 1 1 3566653 223 23321 00000 011 11234
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeec--CCCCCCCChhhHH-HHHHHHHHHHhc
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANA--APSMKATDDHDYK-LKYNLIQDALNV 354 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~--~Psl~~~~~~d~~-lk~~li~d~l~l 354 (429)
++++.++..+ + ....++|+|++.+.+|++.++|||+ +|++......+.. +-..+++.+.+.
T Consensus 260 ~~la~~Aa~a----~----gGldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 260 RLWVDSCSEM----F----GGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp HHHHHHHTTG----G----GCCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH----h----CCCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHh
Confidence 5555554433 2 1378999999999999999999999 9999755444433 333444444443
No 16
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.94 E-value=2.7e-08 Score=100.12 Aligned_cols=169 Identities=16% Similarity=0.182 Sum_probs=99.5
Q ss_pred ccceeecch--h----HHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccC
Q psy16684 105 MPMTFEIPS--E----TALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELI 178 (429)
Q Consensus 105 ~P~T~~Lp~--e----~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
.|+++.+.+ + +..+.+.. +-.+|+||..++.|+||.++++.+++...++.. ...
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~----g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~----------------~~~ 209 (377)
T 1ehi_A 150 NTKYIVVDPESANNWSWDKIVAEL----GNIVFVKAANQGSSVGISRVTNAEEYTEALSDS----------------FQY 209 (377)
T ss_dssp CCCEEEECTTGGGGCCHHHHHHHH----CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHH----------------TTT
T ss_pred CCCEEEEeccccchHHHHHHHHhc----CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHH----------------Hhc
Confidence 567776642 2 45555544 237999999999999999999999988776532 112
Q ss_pred ccceeeeecccCccccCC-ceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCC
Q psy16684 179 PEVYVAQKYITNPYLLEG-RKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQG 257 (429)
Q Consensus 179 ~~~~IvQkYI~~PlLi~G-rKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g 257 (429)
...++||+||+ | + ++++-|+... ++ .+. .-+-+....... ...+-+.. .+ |..|
T Consensus 210 ~~~vlvEe~I~------G~~--E~~v~vl~~~-~~-~~~--~~~ei~~~~~~~-~~~~~d~~---~k---------~~~g 264 (377)
T 1ehi_A 210 DYKVLIEEAVN------GAR--ELEVGVIGND-QP-LVS--EIGAHTVPNQGS-GDGWYDYN---NK---------FVDN 264 (377)
T ss_dssp CSCEEEEECCC------CSC--EEEEEEEESS-SC-EEE--EEEEEECTTSSS-SSCCCCHH---HH---------TTCC
T ss_pred CCcEEEEcCCC------CCc--eEEEEEEcCC-Cc-EEE--eeEEEEecCCCC-cCceeCHH---hc---------ccCC
Confidence 45799999997 4 4 5666666542 11 111 111111110000 00000000 00 0000
Q ss_pred --CccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 258 --RKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 258 --~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.... .+....+.+.++|++++.+++.++ +|-...++||++|++++|||||||+.|+++.
T Consensus 265 ~~~~~~-----------~Pa~l~~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~ 325 (377)
T 1ehi_A 265 SAVHFQ-----------IPAQLSPEVTKEVKQMALDAYKVL--------NLRGEARMDFLLDENNVPYLGEPNTLPGFTN 325 (377)
T ss_dssp TTCEEE-----------SSCCCCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred CCeeEE-----------eCCCCCHHHHHHHHHHHHHHHHHc--------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCc
Confidence 0000 011122345567777777776664 3558899999999999999999999999887
Q ss_pred CC
Q psy16684 336 TD 337 (429)
Q Consensus 336 ~~ 337 (429)
.+
T Consensus 326 ~s 327 (377)
T 1ehi_A 326 MS 327 (377)
T ss_dssp TC
T ss_pred cc
Confidence 64
No 17
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.93 E-value=6.4e-09 Score=101.03 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=91.4
Q ss_pred ccceeecc--hhHHH-HHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETAL-FLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~-f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+|+.+. ++... +.+.+. ..+|+||..++.|+||.++++.+++...++.. .....+
T Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~----~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~----------------~~~~~~ 171 (307)
T 3r5x_A 112 TPDWIELTKMEDLNFDELDKLG----FPLVVKPNSGGSSVGVKIVYDKDELISMLETV----------------FEWDSE 171 (307)
T ss_dssp CCCEEEEESSSCCCHHHHHHHC----SSEEEEECC----CCCEEECSHHHHHHHHHHH----------------HHHCSE
T ss_pred CCCEEEEeChhhhhHHHHHhcC----CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHH----------------HhcCCC
Confidence 67777763 33332 555442 36899999999999999999999988776431 112458
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccc
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
++||+||+ |+ ++++.++-...-|... +.+...+ +.+-+++.- .|...
T Consensus 172 ~lvee~i~------G~--e~~v~v~~g~~~~~~~--------~~~~~~~--------~~~~~~~~~--------~g~~~- 218 (307)
T 3r5x_A 172 VVIEKYIK------GE--EITCSIFDGKQLPIIS--------IRHAAEF--------FDYNAKYDD--------ASTIE- 218 (307)
T ss_dssp EEEEECCC------SE--EEEEEEETTEECCCEE--------EEEEEEE--------ETTEEEEEE--------EEEEE-
T ss_pred EEEECCcC------CE--EEEEEEECCEEeeEEE--------EEcCCcc--------cChhhcCCC--------CCCeE-
Confidence 99999998 54 6777663211111111 1111100 000111100 01000
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChh
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDH 339 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~ 339 (429)
......+.+.++|.+++.+++.++ ++....++||++| +++||+||||+.|+++..+..
T Consensus 219 -----------~p~~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~ 276 (307)
T 3r5x_A 219 -----------EVIELPAELKERVNKASLACYKAL--------KCSVYARVDMMVK-DGIPYVMEVNTLPGMTQASLL 276 (307)
T ss_dssp -----------EECCCCHHHHHHHHHHHHHHHHHT--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTSHH
T ss_pred -----------ecCCCCHHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEE-CCeEEEEEEcCCCCCCccCHH
Confidence 000112334456666666666654 2445789999999 699999999999999877543
No 18
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.91 E-value=1.1e-08 Score=100.66 Aligned_cols=147 Identities=17% Similarity=0.138 Sum_probs=87.1
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCC-ceeeeEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEG-RKFDMRMYV 205 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~G-rKFDlRvyv 205 (429)
+-.+|+||..++.|+||.++++.+++...++.. ......++||+||+ | + ++++-|
T Consensus 150 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~----------------~~~~~~vlvEe~I~------G~~--E~~v~v 205 (322)
T 2fb9_A 150 DPPFFVKPANTGSSVGISRVERFQDLEAALALA----------------FRYDEKAVVEKALS------PVR--ELEVGV 205 (322)
T ss_dssp CSCEEEEETTCCTTTTCEEESSHHHHHHHHHHH----------------TTTCSEEEEEECCS------SCE--EEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH----------------HhcCCeEEEEeCCC------CCe--eEEEEE
Confidence 347999999999999999999999988776532 11245799999997 4 4 556655
Q ss_pred EEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHH
Q psy16684 206 LVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKI 285 (429)
Q Consensus 206 Lvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I 285 (429)
+... ++ .+- ..|-+.....-|+.. ..+ | ++.+. . . .+....+.+.++|
T Consensus 206 l~~~-~~-~~~--~~~ei~~~~~~~~~~---~k~-~-~g~~~----------~-~------------~Pa~l~~~~~~~i 253 (322)
T 2fb9_A 206 LGNV-FG-EAS--PVGEVRYEAPFYDYE---TKY-T-PGRAE----------L-L------------IPAPLDPGTQETV 253 (322)
T ss_dssp ESSS-SC-EEE--EEEEEEEECCEEETT---TEE-E-CCEEE----------E-E------------SSCCCCTTHHHHH
T ss_pred EeCC-Cc-eEe--eeEEEeeCCCccCHH---Hcc-c-CCCeE----------E-E------------eCCCCCHHHHHHH
Confidence 5432 11 110 001111100111100 000 0 00000 0 0 0111112334566
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
++++.+++.++ +|....++||++| +++|||||||+.|+++..+-
T Consensus 254 ~~~a~~~~~al--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~ 297 (322)
T 2fb9_A 254 QELALKAYKVL--------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTSM 297 (322)
T ss_dssp HHHHHHHHHHH--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSCH
T ss_pred HHHHHHHHHHh--------CCceEEEEEEEEE-CCcEEEEEEECCCCCCcccH
Confidence 77777766665 2557889999999 99999999999999987663
No 19
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.88 E-value=1.5e-08 Score=99.13 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=51.1
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCC---CCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQG---RGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIP 179 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G---~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
.|+|+.+. +++..++++.. .+..+|+||..|+.| +|+.++++.+++.. ..
T Consensus 113 ~P~~~~~~~~~~~~~~~~~~~--~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~-----------------------~~ 167 (324)
T 1z2n_X 113 IPNSFSVKSKEEVIQLLQSKQ--LILPFIVKPENAQGTFNAHQMKIVLEQEGIDD-----------------------IH 167 (324)
T ss_dssp CSCEEEESSHHHHHHHHHTTC--SCSSEEEEESBCSSSSGGGEEEEECSGGGGTT-----------------------CC
T ss_pred CCCEEEeCCHHHHHHHHHHcC--CCCCEEEeeCCCCCCccceeeEEEeCHHHHhh-----------------------cC
Confidence 68888874 44555554321 124799999999899 99999998766421 23
Q ss_pred cceeeeecccCccccCCceeeeEEEEEE
Q psy16684 180 EVYVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 180 ~~~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
.+++||+||+.+ | +|+|++|+-
T Consensus 168 ~~~lvqe~i~~~----g--~~~~v~v~g 189 (324)
T 1z2n_X 168 FPCLCQHYINHN----N--KIVKVFCIG 189 (324)
T ss_dssp SSEEEEECCCCT----T--CEEEEEEET
T ss_pred CCEEEEEccCCC----C--cEEEEEEEC
Confidence 579999999842 3 799998863
No 20
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.85 E-value=2.2e-08 Score=100.83 Aligned_cols=148 Identities=20% Similarity=0.201 Sum_probs=91.5
Q ss_pred ceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEE
Q psy16684 128 NMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 128 ~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
-.+|+||..++.|+||.++++.+++...++.. ......+|||+||+ |+ ++++-|+.
T Consensus 189 ~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a----------------~~~~~~vlVEe~I~------G~--E~~v~vl~ 244 (373)
T 3lwb_A 189 LPVFVKPARGGSSIGVSRVSSWDQLPAAVARA----------------RRHDPKVIVEAAIS------GR--ELECGVLE 244 (373)
T ss_dssp SCEEEEESBCSTTTTCEEECSGGGHHHHHHHH----------------HTTCSSEEEEECCE------EE--EEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHH----------------HhcCCCEEEeCCCC------Ce--EEEEEEEE
Confidence 36899999999999999999999988766532 11245799999998 54 55666655
Q ss_pred eeecCCeEEEEcceEEEEc--Cc----CCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHH
Q psy16684 208 TSFSPLTVWIARDGFARIA--GI----KYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDEL 281 (429)
Q Consensus 208 ts~~Pl~~y~y~~g~~R~a--~~----~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l 281 (429)
.. ...+....-+-++.. .. -|+. . +++. .++... ..+....+.+
T Consensus 245 ~~--~~~~~~~~~~ei~~~~~~~~~~~~~d~---~------~ky~--------~~~~~~-----------~~Pa~l~~~~ 294 (373)
T 3lwb_A 245 MP--DGTLEASTLGEIRVAGVRGREDSFYDF---A------TKYL--------DDAAEL-----------DVPAKVDDQV 294 (373)
T ss_dssp CT--TSCEEECCCEEEECCSTTCSEESSSCH---H------HHHT--------CTTCEE-----------ESSCCCCHHH
T ss_pred CC--CCceEEeeeeEEEccCCCCccccccch---h------hccc--------CCCceE-----------EeCCCCCHHH
Confidence 43 111111122222222 11 1100 0 0000 000000 0111223455
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCCh
Q psy16684 282 FQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338 (429)
Q Consensus 282 ~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~ 338 (429)
.++|++++.+++.++ +|..+.++||++|+++. ||+|||+.|+++..+-
T Consensus 295 ~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~ 342 (373)
T 3lwb_A 295 AEAIRQLAIRAFAAI--------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISM 342 (373)
T ss_dssp HHHHHHHHHHHHHHT--------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSH
T ss_pred HHHHHHHHHHHHHHh--------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccH
Confidence 677888877777765 35678999999999999 9999999999987664
No 21
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.84 E-value=2.7e-09 Score=101.66 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=87.7
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+|+.+. +++..+.+++. ..+|+||..++.|+|+.++++.+++....+... ... .....++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~~----~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~-----------~~~-~~~~~~~ 166 (280)
T 1uc8_A 103 QPKTALATDREEALRLMEAFG----YPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKE-----------VLG-GFQHQLF 166 (280)
T ss_dssp CCCEEEESSHHHHHHHHHHHC----SSEEEECSBCCBCSHHHHHHHHHC------------------------CTTTTCE
T ss_pred CCCeEeeCCHHHHHHHHHHhC----CCEEEEECCCCCcccceecccccccchhhhhHh-----------hhc-ccCCCcE
Confidence 58888773 56666766652 369999999999999999988777765543210 000 1124689
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+ |..+++|++++-.. +. ....|.. ..| .+|.+. +|...
T Consensus 167 lvqe~i~------~~~~e~~v~v~~~~-----~~---~~~~~~~-~~~-----------~~~~~~--------g~~~~-- 210 (280)
T 1uc8_A 167 YIQEYVE------KPGRDIRVFVVGER-----AI---AAIYRRS-AHW-----------ITNTAR--------GGQAE-- 210 (280)
T ss_dssp EEEECCC------CSSCCEEEEEETTE-----EE---EEEEC----------------------------------CE--
T ss_pred EEEeccC------CCCceEEEEEECCE-----EE---EEEEEec-CCc-----------cccccC--------Ccccc--
Confidence 9999998 34689999886321 11 0111211 111 011110 11100
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
... +-+++.+++.+++.++ ++ ..+|+||++|+++ ||+||||..|++..
T Consensus 211 -----------p~~----l~~~~~~~~~~~~~~l--------g~-g~~~vD~~~~~~g-~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 211 -----------NCP----LTEEVARLSVKAAEAV--------GG-GVVAVDLFESERG-LLVNEVNHTMEFKN 258 (280)
T ss_dssp -----------ECC----CCHHHHHHHHHHHHHT--------TC-SEEEEEEEEETTE-EEEEEEETTCCCTT
T ss_pred -----------CCC----CCHHHHHHHHHHHHHh--------CC-CeEEEEEEEeCCC-eEEEEEeCCCCccc
Confidence 000 1124566666655554 13 6789999999997 99999999998764
No 22
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.79 E-value=1.4e-08 Score=99.44 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 281 LFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 281 l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
+.++|.+++.+++.++.... ..+...+++||++|++++||+||||+.|+..
T Consensus 241 ~~~~i~~~a~~~~~~l~~~~---~~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 241 LLMDVIEAGERVVKAAEELM---GGLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp GHHHHHHHHHHHHHHHHHHS---SCCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred HHHHHHHHHHHHHHHHHhhc---ccccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 34567777777777764322 1378899999999999999999999999984
No 23
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.78 E-value=1.8e-08 Score=101.16 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=92.5
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCC-ceee-eEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEG-RKFD-MRMY 204 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~G-rKFD-lRvy 204 (429)
+-.+|+||..++.|.|+.++++.+++...++.. ......++||+||+ | +-|. +++.
T Consensus 185 g~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~----------------~~~~~~vlVEe~I~------G~~E~svi~v~ 242 (367)
T 2pvp_A 185 NFPFIVKPSNAGSSLGVNVVKEEKELIYALDSA----------------FEYSKEVLIEPFIQ------GVKEYNLAGCK 242 (367)
T ss_dssp CSCEEEEESSCCTTTTCEEESSTTSHHHHHHHH----------------TTTCSCEEEEECCT------TCEEEEEEEEE
T ss_pred CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHH----------------HhcCCcEEEEeCCC------CCceeeEEEEE
Confidence 457999999999999999999999888776532 11245799999997 5 6544 5554
Q ss_pred EEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcC-CCCccchHHHHHHHHHccccchHHHHHH
Q psy16684 205 VLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLS-QGRKWDIQNLRLFLTAMHGREIVDELFQ 283 (429)
Q Consensus 205 vLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~-~g~~wsl~~l~~~l~~~~g~~~~~~l~~ 283 (429)
| .+ . ..++. ++.... ..+-+. ...|. ++.... .+....+.+.+
T Consensus 243 v--~g-~-~~~~~-----~ei~~~----~~~~d~------------~~ky~~g~~~~~-----------~Pa~l~~~~~~ 286 (367)
T 2pvp_A 243 I--KK-D-FCFSY-----IEEPNK----QEFLDF------------KQKYLDFSRNKA-----------PKASLSNALEE 286 (367)
T ss_dssp E--TT-E-EEEEE-----EEETTT----TEEECC------------CCSSCCSCCCSC-----------CCCCCCHHHHH
T ss_pred E--CC-E-EEEEE-----EEEecC----CceEcc------------cccccCCCeeEE-----------ecCCCCHHHHH
Confidence 4 21 0 11111 011110 000000 00010 110000 01111234456
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHHhc
Q psy16684 284 KIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNV 354 (429)
Q Consensus 284 ~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l~l 354 (429)
+|++++.+++.++ +|....++||++| +++||+||||+.|+++..+-.. =...|+..++..
T Consensus 287 ~i~~~a~~~~~aL--------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~~p--~~~~l~~~li~~ 346 (367)
T 2pvp_A 287 QLKENFKKLYSDL--------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLANYLFD--DFKTTLENLAQS 346 (367)
T ss_dssp HHHHHHHHHHTTT--------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGGSS--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccccC--CHHHHHHHHHhC
Confidence 6777777666654 3566789999999 8999999999999986544332 234555555554
No 24
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.75 E-value=3.2e-08 Score=95.67 Aligned_cols=78 Identities=23% Similarity=0.257 Sum_probs=58.6
Q ss_pred cccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEec-CchHHHHHhhccCCCcccccCCCCCCCcccCcc
Q psy16684 104 AMPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFK-KLSEFEEWRENKDWSPKERKRSDDPNDIELIPE 180 (429)
Q Consensus 104 f~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
.+|+|+.+. +++..|++++. .+|+||..++.|+||.+++ +.+++..+.+... .....
T Consensus 134 ~~P~t~~~~~~~~~~~~~~~~~-----p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~---------------~~~~~ 193 (316)
T 1gsa_A 134 LTPETLVTRNKAQLKAFWEKHS-----DIILKPLDGMGGASIFRVKEGDPNLGVIAETLT---------------EHGTR 193 (316)
T ss_dssp TSCCEEEESCHHHHHHHHHHHS-----SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHT---------------TTTTS
T ss_pred cCCCeEEeCCHHHHHHHHHHcC-----CEEEEECCCCCcccEEEecCChHHHHHHHHHHH---------------hcCCc
Confidence 679998873 56777777763 6999999999999999998 7777766554210 11236
Q ss_pred ceeeeecccCccccCCceeeeEEEEE
Q psy16684 181 VYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 181 ~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+++||+||+-+ ..+|+|++++
T Consensus 194 ~~lvqe~i~~~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 194 YCMAQNYLPAI-----KDGDKRVLVV 214 (316)
T ss_dssp CEEEEECCGGG-----GGCEEEEEEE
T ss_pred eEEEecccCCC-----CCCCEEEEEE
Confidence 79999999832 3699999876
No 25
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.74 E-value=1.6e-07 Score=94.58 Aligned_cols=150 Identities=13% Similarity=0.167 Sum_probs=94.5
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCC-CCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQ-GRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~-G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+. +++..+.+++. -.+|+||..+.. |+|+.++++.+++.+..+.. ...+
T Consensus 127 ~p~~~~~~~~~~~~~~~~~~g----~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~------------------~~~~ 184 (389)
T 3q2o_A 127 VATYRLVQNQEQLTEAIAELS----YPSVLKTTTGGYDGKGQVVLRSEADVDEARKLA------------------NAAE 184 (389)
T ss_dssp CCCEEEESSHHHHHHHHHHHC----SSEEEEESSCCSSSCCEEEESSGGGHHHHHHHH------------------HHSC
T ss_pred CCCeEEECCHHHHHHHHHhcC----CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc------------------CCCC
Confidence 56666663 56667776653 368999999864 89999999999988776421 2457
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeee-----cCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCC
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSF-----SPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQ 256 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~-----~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~ 256 (429)
++||+||+. ..++.+.++.... -|........|....+ +
T Consensus 185 ~lvEe~i~g-------~~E~~v~~~~~~~G~~~~~~~~e~~~~~g~~~~~--------------------~--------- 228 (389)
T 3q2o_A 185 CILEKWVPF-------EKEVSVIVIRSVSGETKVFPVAENIHVNNILHES--------------------I--------- 228 (389)
T ss_dssp EEEEECCCC-------SEEEEEEEEECTTCCEEECCCEEEEEETTEEEEE--------------------E---------
T ss_pred EEEEecccC-------ceEEEEEEEEcCCCCEEEecCeeeEEcCCceEEE--------------------E---------
Confidence 999999982 1355555554310 0111111111111000 0
Q ss_pred CCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCC
Q psy16684 257 GRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKAT 336 (429)
Q Consensus 257 g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~ 336 (429)
.+....+.+.+++.+++.+++.++ ++...+++||++|.++++|+||||..|+.+..
T Consensus 229 ----------------~p~~l~~~~~~~~~~~a~~~~~~l--------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~ 284 (389)
T 3q2o_A 229 ----------------VPARITEELSQKAIAYAKVLADEL--------ELVGTLAVEMFATADGEIYINELAPRPHNSGH 284 (389)
T ss_dssp ----------------ESCSSCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGGGT
T ss_pred ----------------CCCCCCHHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCchh
Confidence 011112334456666666665554 25678999999999999999999999987643
No 26
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.71 E-value=2.8e-07 Score=93.52 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=93.4
Q ss_pred ccceeecc----hhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCc
Q psy16684 105 MPMTFEIP----SETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIP 179 (429)
Q Consensus 105 ~P~T~~Lp----~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
.|+++.+. +++..+.+++. -.+|+||..++ .|+|+.++++.+++....+.. ..
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~~g----~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~------------------~~ 195 (403)
T 3k5i_A 138 MAEHRELVENTPAELAKVGEQLG----YPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL------------------KD 195 (403)
T ss_dssp BCCEEEESSCCHHHHHHHHHHHC----SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT------------------TT
T ss_pred CCCEEEEcCCCHHHHHHHHHHhC----CCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc------------------CC
Confidence 45666654 45666666652 36999998886 999999999999988776531 24
Q ss_pred cceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCc
Q psy16684 180 EVYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRK 259 (429)
Q Consensus 180 ~~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ 259 (429)
..+|||+||+. ..++.+.++.... ++..|.-...... ... .-.+
T Consensus 196 ~~~lvEe~i~~-------~~E~sv~v~~~~~---g~~~~p~~~~~~~------~g~-------~~~~------------- 239 (403)
T 3k5i_A 196 RPLYAEKWAYF-------KMELAVIVVKTKD---EVLSYPTVETVQE------DSI-------CKLV------------- 239 (403)
T ss_dssp SCEEEEECCCE-------EEEEEEEEEECSS---CEEECCCEEEEEE------TTE-------EEEE-------------
T ss_pred CcEEEecCCCC-------CeEEEEEEEEcCC---CEEEeCCeeeEEe------CCE-------EEEE-------------
Confidence 57999999972 2456666555421 1111111000000 000 0000
Q ss_pred cchHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 260 WDIQNLRLFLTAMHGRE-IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 260 wsl~~l~~~l~~~~g~~-~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
| .+.. ..+.+.+++.+++.+++.++ ++...+++||++|.++++|++|||..|+.+
T Consensus 240 ~------------~Pa~~l~~~~~~~~~~~a~~i~~~L--------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 240 Y------------APARNVSDAINQKAQELARKAVAAF--------DGKGVFGVEMFLLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp E------------ESCSSCCHHHHHHHHHHHHHHHHTS--------CCSEEEEEEEEEETTSCEEEEEEESSCCGG
T ss_pred E------------eCCCCCCHHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCCCcEEEEEeecCCCCC
Confidence 0 0111 12334456666666665554 356899999999999999999999999975
No 27
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.64 E-value=3.4e-07 Score=93.46 Aligned_cols=150 Identities=10% Similarity=0.053 Sum_probs=90.8
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCC-CCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPS-GGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~-~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+. +++..+.++....- -.+|+||. .|+.|+|+.++++.+++....+.. ...+
T Consensus 148 ~p~~~~v~~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~------------------~~~~ 208 (419)
T 4e4t_A 148 VAPHVVIESAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAAL------------------GGVP 208 (419)
T ss_dssp BCCEEEECSHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHT------------------TTCC
T ss_pred CCCeEEECCHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhc------------------CCCc
Confidence 45555553 45554444400001 26999999 899999999999999998876531 3467
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeecCCeEEE-------EcceEEEEcCcCCCCCCccCcccccccccccccCCCc
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWI-------ARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENL 254 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~-------y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y 254 (429)
+|||+||+. ..++.+-++.... -.+.. +++|....+
T Consensus 209 ~lvEe~i~~-------~~Eisv~v~~~~~--G~~~~~~~~e~~~~~g~~~~~---------------------------- 251 (419)
T 4e4t_A 209 CVLEKRLPL-------KYEVSALIARGAD--GRSAAFPLAQNVHHNGILALT---------------------------- 251 (419)
T ss_dssp EEEEECCCE-------EEEEEEEEEECTT--SCEEECCCEEEEEETTEEEEE----------------------------
T ss_pred EEEeecCCC-------CeEEEEEEEEcCC--CCEEEEeCeEEEeeCCeEEEE----------------------------
Confidence 999999982 2345554444321 01111 111111100
Q ss_pred CCCCccchHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 255 SQGRKWDIQNLRLFLTAMHGRE-IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 255 ~~g~~wsl~~l~~~l~~~~g~~-~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
| .+.. ..+.+.+++++++.+++.++ ++...+++||++|.++++|++|||..|+-
T Consensus 252 -----~------------~Pa~~l~~~~~~~~~~~a~~i~~~l--------g~~G~~~vE~~~~~dG~~~v~EiNpR~~~ 306 (419)
T 4e4t_A 252 -----I------------VPAPAADTARVEEAQQAAVRIADTL--------GYVGVLCVEFFVLEDGSFVANEMAPRPHN 306 (419)
T ss_dssp -----E------------ESCTTCCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTCCEEEEEEESSCCG
T ss_pred -----E------------cCCCCCCHHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEeCCCCEEEEEEeCCCCC
Confidence 0 0101 12334456666666666554 25678999999999999999999999986
Q ss_pred CC
Q psy16684 334 KA 335 (429)
Q Consensus 334 ~~ 335 (429)
+.
T Consensus 307 sg 308 (419)
T 4e4t_A 307 SG 308 (419)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 28
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.62 E-value=2.8e-07 Score=92.96 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=87.3
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. +++..+.+++ +-.+|+||..++.|+|++++++.+++......... ......+
T Consensus 124 ~p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~--------------~~~~~~~ 185 (403)
T 4dim_A 124 TARHFVVRNENELKNALENL----KLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMN--------------LTKRDYC 185 (403)
T ss_dssp CCCEECCCSHHHHHHHHHTS----CSSEEEECSCC-----CEEESSHHHHHHHHHHHHH--------------HCSSSCC
T ss_pred CCCEEEeCCHHHHHHHHhcC----CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh--------------cCcCCcE
Confidence 56766663 4555555543 34699999999999999999999998876643200 1124679
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+ |..|++.+++. . -++.++- ...++ .|..+..++ .+. +
T Consensus 186 lvEe~i~------g~e~sv~~~~~--~---g~~~~~~-~~~~~--------------~~~~~~~~~-------~~~-~-- 229 (403)
T 4dim_A 186 IVEEFIE------GYEFGAQAFVY--K---NDVLFVM-PHGDE--------------TYMSHTAVP-------VGH-Y-- 229 (403)
T ss_dssp EEEECCC------SEEEEEEEEEE--T---TEEEEEE-EEEEE--------------EEESSSEEE-------EEE-E--
T ss_pred EEEEccC------CcEEEEEEEEE--C---CEEEEEE-Eecce--------------eccCCCCcc-------eeE-E--
Confidence 9999998 66777776531 1 1221110 00000 000000000 000 0
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+....+.+.++|.+++.+++.++.- ....+++||++| +++||+||||..|+-+
T Consensus 230 ----------~p~~l~~~~~~~l~~~a~~~~~~lg~-------~gg~~~ve~~~~-~~~~~~iEiN~R~~~~ 283 (403)
T 4dim_A 230 ----------VPLDVKDDIIEKTKTEVKKAIKALGL-------NNCAVNVDMILK-DNEVYIIELTGRVGAN 283 (403)
T ss_dssp ----------ESCCSCHHHHHHHHHHHHHHHHHHTC-------CSEEEEEEEEEE-TTEEEEEEEESSCCST
T ss_pred ----------eCCCCCHHHHHHHHHHHHHHHHHcCC-------CCCcEEEEEEEE-CCcEEEEEEcCCCCCC
Confidence 01111234455667776666665511 122579999998 6799999999998854
No 29
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.58 E-value=8e-07 Score=88.97 Aligned_cols=149 Identities=13% Similarity=0.204 Sum_probs=86.4
Q ss_pred ccceeecchhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCcccee
Q psy16684 105 MPMTFEIPSETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYV 183 (429)
Q Consensus 105 ~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I 183 (429)
.|++..+.+. ..+++++ +-.+|+||..++ .|+|+.++++.+++.... . ..++
T Consensus 115 ~p~~~~~~~~-~~~~~~~----~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~---------------------~-~~~l 167 (380)
T 3ax6_A 115 VPEYKLVKDL-ESDVREF----GFPVVQKARKGGYDGRGVFIIKNEKDLENAI---------------------K-GETY 167 (380)
T ss_dssp CCCEEECSSH-HHHHHTT----CSSEEEEESCCC-----EEEECSGGGGGGCC---------------------C-SSEE
T ss_pred CCCeEEeCCH-HHHHHhc----CCCEEEEecCCCCCCCCeEEECCHHHHHHHh---------------------c-CCEE
Confidence 4777766432 1144332 347999999999 999999999988764322 1 6799
Q ss_pred eeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCC--CCCCccCcccccccccccccCCCcCCCCccc
Q psy16684 184 AQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKY--CKDNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 184 vQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y--~~~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
||+||+. | .++++.++...-.-..++- .. +.+ ..... + ..++
T Consensus 168 vEe~i~~-----g--~e~sv~~~~~~~G~~~~~~----~~----~~~~~~~~~~-----~--~~~~-------------- 211 (380)
T 3ax6_A 168 LEEFVEI-----E--KELAVMVARNEKGEIACYP----VV----EMYFDEDANI-----C--DTVI-------------- 211 (380)
T ss_dssp EEECCCE-----E--EEEEEEEEECSSCCEEEEE----EE----EEC---------------CEEE--------------
T ss_pred EEeccCC-----C--eeEEEEEEECCCCCEEEEC----Ce----eeeecccCCe-----e--EEEE--------------
Confidence 9999983 2 4777777765210111110 00 000 00000 0 0000
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
.+....+.+.+++.+++.+++.++ ++...+++||++|++++||+||||..|+.+.
T Consensus 212 -----------~p~~l~~~~~~~~~~~a~~~~~~l--------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 212 -----------APARIEEKYSKIAREIATSVVEAL--------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSG 266 (380)
T ss_dssp -----------ESCSSCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTSCEEEEEEESSCCGGG
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHHC--------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCc
Confidence 011112344556777777766665 2457899999999999999999999998764
No 30
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.58 E-value=1.3e-06 Score=89.64 Aligned_cols=162 Identities=17% Similarity=0.232 Sum_probs=93.6
Q ss_pred cccee--ec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCcc
Q psy16684 105 MPMTF--EI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPE 180 (429)
Q Consensus 105 ~P~T~--~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
.|+++ .+ ++++..+.+++. -.+|+||..++.|+|+.++++.+++....+...... . ......
T Consensus 134 ~p~~~~~~~~~~~e~~~~~~~~g----~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~---------~-~~~~~~ 199 (446)
T 3ouz_A 134 VIPGSDGALAGAEAAKKLAKEIG----YPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEA---------M-TAFGDG 199 (446)
T ss_dssp BCSBCSSSCCSHHHHHHHHHHHC----SSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHH---------H-HHHSCC
T ss_pred cCCCcccCCCCHHHHHHHHHHhC----CCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHH---------H-HhcCCC
Confidence 45554 33 456777766653 369999999999999999999999887664210000 0 001246
Q ss_pred ceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCcc
Q psy16684 181 VYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKW 260 (429)
Q Consensus 181 ~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~w 260 (429)
.++||+||+.| -++.+-++...... .+++. .|-|+.. .....+...
T Consensus 200 ~~lvEe~i~g~-------~e~~v~v~~d~~g~-~~~~~----~~~~~~~-------~~~~~~~~~--------------- 245 (446)
T 3ouz_A 200 TMYMEKYIQNP-------RHIEVQVIGDSFGN-VIHVG----ERDCSMQ-------RRHQKLIEE--------------- 245 (446)
T ss_dssp CEEEEECCSSC-------EEEEEEEEECTTSC-EEEEE----EEEEEEE-------ETTEEEEEE---------------
T ss_pred CEEEEeCCCCC-------cEEEEEEEEcCCCC-EEEEe----eceeeee-------ecCceEEEE---------------
Confidence 79999999953 26666666543211 11111 1111100 000000000
Q ss_pred chHHHHHHHHHcccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 261 DIQNLRLFLTAMHGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 261 sl~~l~~~l~~~~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+. .....+.++|.+++.+++.++ +.-..+++||++|+++++|+||||..|+-.
T Consensus 246 ------------~p~~~l~~~~~~~l~~~a~~~~~~l--------g~~G~~~ve~~~~~~g~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 246 ------------SPAILLDEKTRTRLHETAIKAAKAI--------GYEGAGTFEFLVDKNLDFYFIEMNTRLQVE 300 (446)
T ss_dssp ------------ESCTTSCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCTT
T ss_pred ------------CCCCCCCHHHHHHHHHHHHHHHHHc--------CCCCceEEEEEEeCCCCEEEEEeECCCCCc
Confidence 000 111334456666666655554 133678899999999999999999999764
No 31
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.57 E-value=9.3e-07 Score=88.82 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=90.0
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+ ++++..+.+++. -.+|+||..++ .|+|+.++++.+++....+.. ...+
T Consensus 125 ~p~~~~~~~~~~~~~~~~~~g----~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~------------------~~~~ 182 (377)
T 3orq_A 125 VVPFISVKESTDIDKAIETLG----YPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLI------------------ETSE 182 (377)
T ss_dssp BCCEEEECSSTHHHHHHHHTC----SSEEEEESSSCCTTTTEEEECSTTSHHHHHHHH------------------TTSC
T ss_pred CCCeEEECCHHHHHHHHHHcC----CCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc------------------CCCc
Confidence 4565555 367777776652 36899999986 899999999999988776532 2367
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeec-----CCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCC
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFS-----PLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQ 256 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~-----Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~ 256 (429)
+|||+||+- ..++.+.++...-. |..--.+++|....+ +
T Consensus 183 ~ivEe~i~g-------~~E~sv~~~~~~~g~~~~~~~~e~~~~~g~~~~~--------------------~--------- 226 (377)
T 3orq_A 183 CVAEKYLNI-------KKEVSLTVTRGNNNQITFFPLQENEHRNQILFKT--------------------I--------- 226 (377)
T ss_dssp EEEEECCCE-------EEEEEEEEEECGGGCEEECCCEEEEEETTEEEEE--------------------E---------
T ss_pred EEEEccCCC-------CEEEEEEEEEeCCCCEEEECCEeEEEECCEEEEE--------------------E---------
Confidence 999999982 13566655533211 111111111111000 0
Q ss_pred CCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 257 GRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 257 g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+....+ .+++.+++.+++.++ ++...+++||++|+++++|++|||..|+-+
T Consensus 227 ----------------~Pa~l~~--~~~~~~~a~~i~~~l--------g~~G~~~ve~~~~~~g~~~v~EinpR~~~s 278 (377)
T 3orq_A 227 ----------------VPARIDK--TAEAKEQVNKIIQSI--------HFIGTFTVEFFIDSNNQLYVNEIAPRPHNS 278 (377)
T ss_dssp ----------------ESCSSCC--HHHHHHHHHHHHTTS--------CCCEEEEEEEEEETTCCEEEEEEESSCCGG
T ss_pred ----------------CCCCCCH--HHHHHHHHHHHHHHC--------CCeEEEEEEEEEeCCCcEEEEEeeCCcCCC
Confidence 0000000 234555555544433 356799999999999999999999999854
No 32
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.56 E-value=8.1e-08 Score=104.76 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=53.2
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEec---CchHHHHHhhccCCCcccccCCCCCCCcccCc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFK---KLSEFEEWRENKDWSPKERKRSDDPNDIELIP 179 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (429)
+|++..+ +++...++.+ ..+..+|+||..++.|+||.+++ +.+++...++.. ....
T Consensus 499 vP~~~~~~~~~ea~~~~~~---~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~----------------~~~~ 559 (750)
T 3ln6_A 499 TPFGDEFTDRKEALNYFSQ---IQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIA----------------FTED 559 (750)
T ss_dssp CCCCCCEETTTTHHHHHHH---SSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHH----------------HHHC
T ss_pred CCCEEEECCHHHHHHHHHH---hcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHH----------------HhhC
Confidence 5666665 3455554422 22457999999999999999998 777777665421 1124
Q ss_pred cceeeeecccCccccCCceeeeEEEEEE
Q psy16684 180 EVYVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 180 ~~~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
..++||+||+ |+ |+|+.|+-
T Consensus 560 ~~vlVEefI~------G~--E~~v~Vvg 579 (750)
T 3ln6_A 560 SAILVEEYIE------GT--EYRFFVLE 579 (750)
T ss_dssp SEEEEEECCC------SE--EEEEEEET
T ss_pred CcEEEEeccC------CC--EEEEEEEC
Confidence 5799999997 53 99998864
No 33
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.56 E-value=3.7e-07 Score=92.83 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=48.8
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+ ++++..+.+++. ..+|+||..++.|+|+.++++.+++.++.+..... ... ......+
T Consensus 117 ~p~~~~~~~~~~~~~~~~~~~----~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--------~~~--g~~~~~~ 182 (424)
T 2yw2_A 117 TARYEVFTDFEKAKEYVEKVG----APIVVKADGLAAGKGAVVCETVEKAIETLDRFLNK--------KIF--GKSSERV 182 (424)
T ss_dssp BCCEEEESCHHHHHHHHHHHC----SSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTS--------CTT--GGGGSSE
T ss_pred CCCeEEECCHHHHHHHHHHcC----CcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhh--------hhc--cCCCCeE
Confidence 4676665 356666766542 37999999999999999999999988776432100 000 0113579
Q ss_pred eeeeccc
Q psy16684 183 VAQKYIT 189 (429)
Q Consensus 183 IvQkYI~ 189 (429)
+||+||+
T Consensus 183 lvEe~i~ 189 (424)
T 2yw2_A 183 VIEEFLE 189 (424)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999997
No 34
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.54 E-value=2.3e-06 Score=86.71 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=55.1
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+ ++++..+.+++. ..+|+||..++.|+|+.++++.+++....+.... ......+
T Consensus 116 ~p~~~~~~~~~~~~~~~~~~~----~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~--------------~~~~~~~ 177 (417)
T 2ip4_A 116 TARYRVFREPLEALAYLEEVG----VPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILN--------------RAEGGEV 177 (417)
T ss_dssp BCCEEEESSHHHHHHHHHHHC----SSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTT--------------SSSCCCE
T ss_pred CCCeeeeCCHHHHHHHHHHcC----CCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHh--------------hccCCeE
Confidence 4666665 356666766542 3799999999999999999999998877653210 0112679
Q ss_pred eeeecccCccccCCceeeeEEEEEEe
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVT 208 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvt 208 (429)
+||+||+ |+ ++++.++..
T Consensus 178 lvEe~i~------g~--E~sv~~~~~ 195 (417)
T 2ip4_A 178 VVEEYLE------GE--EATVLALTD 195 (417)
T ss_dssp EEEECCC------SC--EEEEEEEES
T ss_pred EEEECcc------Cc--EEEEEEEEe
Confidence 9999998 43 677766653
No 35
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.51 E-value=7.5e-07 Score=91.21 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=101.4
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ +++...+++++. ..+|+||..++.|+|+.++++.+++.+..+..... ..-......+
T Consensus 122 tp~~~~~~~~~ea~~~~~~~g----~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~----------~~~g~~~~~v 187 (431)
T 3mjf_A 122 SAEYQNFTDVEAALAYVRQKG----APIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAG----------NAFGDAGHRI 187 (431)
T ss_dssp BCCEEEESCHHHHHHHHHHHC----SSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTT----------HHHHCCCCCE
T ss_pred CCCeEeeCCHHHHHHHHHHcC----CeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhh----------ccccCCCCeE
Confidence 4666665 356777776653 36999999999999999999999987766432100 0000113579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
|||+||+ |+ ++.+.+++.+ -.+..... ...+. .+.+ .-+ .++ .|.+..+
T Consensus 188 lvEe~i~------G~--E~sv~~~~dg---~~~~~~~~------~~~~~--~~~~---~~~-------g~~--~gg~g~~ 236 (431)
T 3mjf_A 188 VVEEFLD------GE--EASFIVMVDG---ENVLPMAT------SQDHK--RVGD---GDT-------GPN--TGGMGAY 236 (431)
T ss_dssp EEEECCC------SE--EEEEEEEEES---SCEEECCC------BEECC--EEET---TTE-------EEE--CSCSEEE
T ss_pred EEEEeeC------Cc--EEEEEEEEcC---CEEEEEEe------eEece--eccc---CCC-------CCC--CCCceEE
Confidence 9999998 54 5666555543 12221110 00000 0000 000 000 1111110
Q ss_pred HHHHHHHHHccccc-hHHHHHHHHHHHH-HHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhh
Q psy16684 263 QNLRLFLTAMHGRE-IVDELFQKIAKVV-ITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHD 340 (429)
Q Consensus 263 ~~l~~~l~~~~g~~-~~~~l~~~I~~ii-~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d 340 (429)
.+.. ..+.+.+++.+.+ ..++.++...- -.....+.+||++|++++|++||||..|+........
T Consensus 237 ----------~P~~~l~~~~~~~i~~~i~~~~~~~~~~~g---~~~~G~~~ve~~~~~~g~~~viEiN~R~G~~~~~~i~ 303 (431)
T 3mjf_A 237 ----------SPAPVVTDDVHQRVMDQVIWPTVRGMAAEG---NIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIM 303 (431)
T ss_dssp ----------ESCTTSCHHHHHHHHHHTHHHHHHHHHHTT---CCCEEEEEEEEEECTTSCEEEEEECGGGSTTTHHHHH
T ss_pred ----------eeCCCCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEEEEEEEEEEeCCCCeEEEEEecCCCCcHHHHHH
Confidence 0111 1234445555533 22333332210 1135788999999999999999999999833222222
Q ss_pred HHHHHHHHHHHHhcc
Q psy16684 341 YKLKYNLIQDALNVI 355 (429)
Q Consensus 341 ~~lk~~li~d~l~lv 355 (429)
..+...|++-++.++
T Consensus 304 ~~~g~dl~~~~~~~~ 318 (431)
T 3mjf_A 304 LRMRSDLVELCLAGT 318 (431)
T ss_dssp HHBCSCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 333344555555544
No 36
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.50 E-value=1.2e-06 Score=87.72 Aligned_cols=156 Identities=12% Similarity=0.169 Sum_probs=90.8
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ ++++..+.+++. -.+|+||..++.|+|+.++++.+++....+.... . .......+
T Consensus 128 ~p~~~~~~~~~~~~~~~~~~g----~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~----~--------~~~~~~~~ 191 (391)
T 1kjq_A 128 TSTYRFADSESLFREAVADIG----YPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQ----G--------GRAGAGRV 191 (391)
T ss_dssp BCCEEEESSHHHHHHHHHHHC----SSEEEEESCC---CCCEEECSGGGHHHHHHHHHH----H--------SGGGCCCE
T ss_pred CCCeeeeCCHHHHHHHHHhcC----CCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHh----h--------cccCCCCE
Confidence 4666665 356666666542 3699999999999999999999988876643100 0 00024579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcc-eEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccc
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARD-GFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~-g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
+||+||+. | .++++.++... -.+.++.. +..+. .+ + ..+.|.
T Consensus 192 lvEe~i~~-----g--~E~sv~~~~~~---~g~~~~~~~~~~~~---~~------~------------------~~~~~~ 234 (391)
T 1kjq_A 192 IVEGVVKF-----D--FEITLLTVSAV---DGVHFCAPVGHRQE---DG------D------------------YRESWQ 234 (391)
T ss_dssp EEEECCCC-----S--EEEEEEEEEET---TEEEECCCEEEEEE---TT------E------------------EEEEEE
T ss_pred EEEEecCC-----C--eEEEEEEEEeC---CCeEEccCcceEEE---CC------E------------------EEEEEe
Confidence 99999983 3 35666655542 11211110 00000 00 0 000110
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
+....+.+.++|.+++.+++.++ ++...+++||++|++ +||+||||..|+-+
T Consensus 235 ------------p~~l~~~~~~~~~~~a~~~~~~l--------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 286 (391)
T 1kjq_A 235 ------------PQQMSPLALERAQEIARKVVLAL--------GGYGLFGVELFVCGD-EVIFSEVSPRPHDT 286 (391)
T ss_dssp ------------CCCCCHHHHHHHHHHHHHHHHHH--------CSSEEEEEEEEEETT-EEEEEEEESSCCGG
T ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCC-cEEEEEEECCCCCC
Confidence 11112334556666666666665 246889999999988 89999999999854
No 37
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.50 E-value=2.2e-06 Score=85.40 Aligned_cols=155 Identities=10% Similarity=0.087 Sum_probs=88.0
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|++..+. ++...+.++ -+..+|+||..++ .|+|+.++++.+++....+.. ....
T Consensus 111 ~p~~~~~~~~~~~~~~~~~----~g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~------------------~~~~ 168 (369)
T 3aw8_A 111 TPPFHPVDGPEDLEEGLKR----VGLPALLKTRRGGYDGKGQALVRTEEEALEALKAL------------------GGRG 168 (369)
T ss_dssp CCCEEEESSHHHHHHHHTT----TCSSEEEEECCC------EEEECSHHHHHHHHTTT------------------CSSS
T ss_pred CCCceeeCCHHHHHHHHHH----cCCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc------------------CCCc
Confidence 46666653 445444433 2347999999999 999999999999998877421 2467
Q ss_pred eeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccc
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
++||+||+. |+ ++.+.++..... .+..+. ..+ .+......+ .+.
T Consensus 169 ~lvEe~i~~-----g~--e~sv~~~~d~~G--~~~~~~--~~~----~~~~~~~~~--~~~------------------- 212 (369)
T 3aw8_A 169 LILEGFVPF-----DR--EVSLLAVRGRTG--EVAFYP--LVE----NRHWGGILR--LSL------------------- 212 (369)
T ss_dssp EEEEECCCC-----SE--EEEEEEEECTTS--CEEECC--CEE----EEEETTEEE--EEE-------------------
T ss_pred EEEEEcCCC-----CE--EEEEEEEECCCC--CEEEEC--Cee----eeeeCCEEE--EEE-------------------
Confidence 999999984 44 555555554210 111110 000 000000000 000
Q ss_pred hHHHHHHHHHccccc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCC
Q psy16684 262 IQNLRLFLTAMHGRE-IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATD 337 (429)
Q Consensus 262 l~~l~~~l~~~~g~~-~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~ 337 (429)
.+.. ..+.+.++|.+++.+++.++ ++...+++||++|+ ++||+||||..|+.+...
T Consensus 213 -----------~p~~~l~~~~~~~~~~~a~~~~~~l--------g~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~ 269 (369)
T 3aw8_A 213 -----------APAPGASEALQKKAEAYALRAMEAL--------DYVGVLALEFFQVG-EELLFNEMAPRVHNSGHW 269 (369)
T ss_dssp -----------ESCTTCCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEESSCCGGGTT
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEEC-CcEEEEEEeCCcCCccce
Confidence 0000 11234456666666666655 24578999999999 899999999999876544
No 38
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.50 E-value=4.2e-07 Score=90.43 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=63.3
Q ss_pred ccceeec-chhHHHHHHHHhcCCCceEEEcCCCCC-CCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI-PSETALFLQEARRDSHNMWIVKPSGGS-QGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L-p~e~~~f~~~~~~~~~~~wI~KP~~~s-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ ++++..+.+++ +..+|+||..++ .|+|+.++++.+++....+.. .....+
T Consensus 107 ~p~~~~~~~~~~~~~~~~~----~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~-----------------~~~~~~ 165 (365)
T 2z04_A 107 VPEFLVIKRDEIIDALKSF----KLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNH-----------------DKEESF 165 (365)
T ss_dssp CCCEEEC------------------CEEEECC-----------------------------------------------C
T ss_pred CCCEEEEcHHHHHHHHHhc----CCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHh-----------------ccCCCE
Confidence 4665554 34555555443 237999999999 999999999988887665321 124679
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+. |+ ++++.++.........+-..+.+.| . ...+ .+ +
T Consensus 166 lvEe~i~~-----g~--e~sv~~~~d~~G~~~~~~~~~~~~~----~----~~~~--~~-----~--------------- 208 (365)
T 2z04_A 166 IIEEFVKF-----EA--EISCIGVRDREGKTYFYPQPFNKHE----E----GILI--YN-----Y--------------- 208 (365)
T ss_dssp EEEECCCC-----SE--EEEEEEEECTTCCEEECCEEEEEEE----T----TEEE--EE-----E---------------
T ss_pred EEEccCCC-----CE--EEEEEEEECCCCCEEEECCEEEEEe----C----CEeE--EE-----E---------------
Confidence 99999983 43 6777777642111111100010000 0 0000 00 0
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKAT 336 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~ 336 (429)
.+... .+++.+++.+++.++ ++...+++||++|++++||+||||..|+....
T Consensus 209 ----------~p~~~----~~~~~~~~~~~~~~l--------g~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 209 ----------VPYAK----LKEAEEITKRLMELL--------DIVGVFTVEFFLLKDGRVLINEFAPRVHNTGH 260 (365)
T ss_dssp ----------EEEEC----CHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGGGT
T ss_pred ----------CCHhH----HHHHHHHHHHHHHHc--------CCEEEEEEEEEEeCCCcEEEEEeccCcCCCce
Confidence 01100 234555555555543 24578999999999999999999999987544
No 39
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.50 E-value=2e-06 Score=88.23 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=50.5
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ ++++..+++++. ..+|+||..++.|+|++++++.+++..+.+.... .. .. ......+
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~----~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~----~~----~~--g~~~~~~ 203 (451)
T 2yrx_A 138 TADHAAFTSYEEAKAYIEQKG----APIVIKADGLAAGKGVTVAQTVEEALAAAKAALV----DG----QF--GTAGSQV 203 (451)
T ss_dssp BCCEEEESCHHHHHHHHHHHC----SSEEEEECC----CCEEEESSHHHHHHHHHHHHH----HS----CC--BTTBCCE
T ss_pred CCCeEEECCHHHHHHHHHhcC----CcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHh----cc----cc--CCCCCeE
Confidence 4676665 356777776652 3799999999999999999999988876643100 00 00 0113679
Q ss_pred eeeecccCccccCCceeeeEEEEEEe
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVT 208 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvt 208 (429)
|||+||+ |+ ++.+.+++.
T Consensus 204 lvEe~i~------G~--E~sv~~~~d 221 (451)
T 2yrx_A 204 VIEEYLE------GE--EFSFMAFVN 221 (451)
T ss_dssp EEEECCC------SE--EEEEEEEEE
T ss_pred EEEECCc------Cc--EEEEEEEEc
Confidence 9999998 54 555555543
No 40
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.49 E-value=2.1e-06 Score=87.95 Aligned_cols=163 Identities=16% Similarity=0.202 Sum_probs=93.1
Q ss_pred cccee--ec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCcc
Q psy16684 105 MPMTF--EI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPE 180 (429)
Q Consensus 105 ~P~T~--~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
.|+++ .+ ++++..+.+++. -.+|+||..++.|+|+.++++.+++....+...... . ......
T Consensus 129 ~p~~~~~~~~~~~~~~~~~~~~g----~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~----~------~~~~~~ 194 (451)
T 1ulz_A 129 VVPGSDGVLKSLEEAKALAREIG----YPVLLKATAGGGGRGIRICRNEEELVKNYEQASREA----E------KAFGRG 194 (451)
T ss_dssp BCCBCSSSCCCHHHHHHHHHHHC----SSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHH----H------HTTSCC
T ss_pred CCCCcccccCCHHHHHHHHHHcC----CCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHH----H------HhcCCC
Confidence 45554 33 356667766652 369999999999999999999988877654210000 0 001245
Q ss_pred ceeeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCcc
Q psy16684 181 VYVAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKW 260 (429)
Q Consensus 181 ~~IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~w 260 (429)
.++||+||+.+ -++++.++....... +.+. .|.++.. ......... .| .
T Consensus 195 ~~lvEe~i~g~-------~e~~v~v~~~~~G~~-~~~~----~~~~~~~-------~~~~~~~~~-----~P-----~-- 243 (451)
T 1ulz_A 195 DLLLEKFIENP-------KHIEYQVLGDKHGNV-IHLG----ERDCSIQ-------RRNQKLVEI-----AP-----S-- 243 (451)
T ss_dssp CEEEEECCCSC-------EEEEEEEEECTTSCE-EEEE----EEEEEEE-------ETTEEEEEE-----ES-----C--
T ss_pred eEEEEEcccCC-------eEEEEEEEEcCCCCE-EEEe----eeecccc-------cccccceeE-----CC-----c--
Confidence 79999999842 266666666431111 1111 1222100 000000000 00 0
Q ss_pred chHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 261 DIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 261 sl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
....+.+.++|.+++.+++.++ ++-..+++||++|++++||+||||..|+-.
T Consensus 244 --------------~~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~~g~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 244 --------------LILTPEKREYYGNIVTKAAKEI--------GYYNAGTMEFIADQEGNLYFIEMNTRIQVE 295 (451)
T ss_dssp --------------SSCCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEECSCCTT
T ss_pred --------------ccCCHHHHHHHHHHHHHHHHHc--------CCCcceEEEEEEeCCCCEEEEEeeCCCCcc
Confidence 0011234456666666666653 133678999999999999999999998643
No 41
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.48 E-value=2.6e-06 Score=87.27 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=90.0
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
++++..+.+++. -.+|+||..++.|+|+.++++.+++....+...... . .......++||+||+-+
T Consensus 140 ~~~~~~~~~~~g----~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~---------~-~~~~~~~~lvEe~i~g~ 205 (451)
T 2vpq_A 140 VSEAKKIAKKIG----YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEA---------Q-TAFGNGGLYMEKFIENF 205 (451)
T ss_dssp HHHHHHHHHHHC----SSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHH---------H-HHHSCCCEEEEECCCSE
T ss_pred HHHHHHHHHhcC----CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHH---------H-hhcCCCcEEEEEecCCC
Confidence 456666666542 369999999999999999999998877664210000 0 00123679999999842
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
-++++-++....... +.+. .|.|+.. . .|-.- + .+
T Consensus 206 -------~e~~v~v~~~~~G~~-~~~~----~~~~~~~-------~--~~~~~--~--------~~-------------- 240 (451)
T 2vpq_A 206 -------RHIEIQIVGDSYGNV-IHLG----ERDCTIQ-------R--RMQKL--V--------EE-------------- 240 (451)
T ss_dssp -------EEEEEEEEECTTSCE-EEEE----EEEEEEE-------E--TTEEE--E--------EE--------------
T ss_pred -------eEEEEEEEEcCCCCE-EEEe----ccccchh-------c--cccce--E--------EE--------------
Confidence 256666665431111 1111 1211100 0 00000 0 00
Q ss_pred ccccc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEec-CCccEEEEEeecCCCCC
Q psy16684 272 MHGRE-IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQ-DNLNVCLLEANAAPSMK 334 (429)
Q Consensus 272 ~~g~~-~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD-~~~kpWLLEVN~~Psl~ 334 (429)
.+.. ..+.+.++|.+++.+++.++ ++-..+++||++| ++++||+||||..|+-.
T Consensus 241 -~P~~~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 241 -APSPILDDETRREMGNAAVRAAKAV--------NYENAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp -ESCTTCCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred -cCCCCCCHHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 0000 12334556677766666653 2336889999999 89999999999999654
No 42
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.48 E-value=5.7e-07 Score=91.50 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=78.5
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|+|+.++++.+++.+.++..... .... ..........+|||+||+ |+-|.+.+++.
T Consensus 145 g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~----~~~~-~~~~~~~~~~~lvEe~i~------G~e~sv~~~~~ 213 (425)
T 3vot_A 145 SYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAV----NQRD-LNRFVHGKTGIVAEQFID------GPEFAIETLSI 213 (425)
T ss_dssp CSSEEEEESCC-----CEEECSHHHHHHHHHHHHHH----TTSS-HHHHHTTCCCEEEEECCC------SCEEEEEEEEE
T ss_pred CCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhh----hhhh-hhhhccCCCcEEEEEEec------CcEEEEEEEEe
Confidence 447899999999999999999999987765421000 0000 000011346799999997 66666554321
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHccccchHHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIA 286 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~ 286 (429)
. -.+.++ ...-|..... .+ +..+... .+....+.+..+|.
T Consensus 214 --~---g~~~~~-~~~~~~~~~~----------~~------------~~~~~~~------------~Pa~l~~~~~~~i~ 253 (425)
T 3vot_A 214 --Q---GNVHVL-SIGYKGNSKG----------PF------------FEEGVYI------------APAQLKEETRLAIV 253 (425)
T ss_dssp --T---TEEEEE-EEEEEECCCC----------SB------------CCCCEEE------------ESCCCCHHHHHHHH
T ss_pred --C---CcEEEE-eEEEEeccCC----------Cc------------cccceEe------------ecccCCHHHHHHHH
Confidence 1 111110 0001111110 00 0000000 01111233445666
Q ss_pred HHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 287 KVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 287 ~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
+++.+++.++- -....+.+||++|++|+||+||||+.|+-..
T Consensus 254 ~~~~~~~~alg-------~~~G~~~ve~~~~~dG~~~~iEiN~R~gG~~ 295 (425)
T 3vot_A 254 KEVTGAVSALG-------IHQGPAHTELRLDKDGTPYVIEVGARIGGSG 295 (425)
T ss_dssp HHHHHHHHHTT-------CCSEEEEEEEEECTTCCEEEEEEESSCGGGG
T ss_pred HHHHHHHHHcC-------CCcceEEEEEEEEeCCcEEEEEEecCCCCCC
Confidence 66666665541 1247889999999999999999999997543
No 43
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.45 E-value=1.3e-06 Score=89.81 Aligned_cols=71 Identities=11% Similarity=0.069 Sum_probs=48.9
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+. ++...+++++ +..+|+||..++.|+|+.++++.+++.+..+.... .... ......+
T Consensus 138 ~p~~~~~~~~~ea~~~~~~~----g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~--------~~~~--g~~~~~v 203 (442)
T 3lp8_A 138 TAKYGYFVDTNSAYKFIDKH----KLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLV--------HHKF--GEAGCAI 203 (442)
T ss_dssp BCCEEEESSHHHHHHHHHHS----CSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHT--------SCTT--GGGGSSE
T ss_pred CCCEEEECCHHHHHHHHHHc----CCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHh--------hccc--CCCCCeE
Confidence 56776663 5666666654 34799999999999999999999998776653210 0000 1123579
Q ss_pred eeeeccc
Q psy16684 183 VAQKYIT 189 (429)
Q Consensus 183 IvQkYI~ 189 (429)
|||+||+
T Consensus 204 lvEe~i~ 210 (442)
T 3lp8_A 204 IIEEFLE 210 (442)
T ss_dssp EEEECCC
T ss_pred EEEEeec
Confidence 9999998
No 44
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.41 E-value=2e-06 Score=87.25 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=54.9
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+ ++++..+++++. -.+|+||..++.|+|+.++++.+++....+.... ...-......+
T Consensus 117 ~p~~~~~~~~~~~~~~~~~~~----~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~----------~~~~g~~~~~~ 182 (422)
T 2xcl_A 117 TAEYETFTSFDEAKAYVQEKG----APIVIKADGLAAGKGVTVAMTEEEAIACLHDFLE----------DEKFGDASASV 182 (422)
T ss_dssp BCCEEEESCHHHHHHHHHHHC----SSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHT----------SCTTGGGGSSE
T ss_pred CCCeEEECCHHHHHHHHHhcC----CCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHh----------hhhccCCCCeE
Confidence 4676665 356667766652 3799999999999999999999998876643210 00000013679
Q ss_pred eeeecccCccccCCceeeeEEEEEEe
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVT 208 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvt 208 (429)
|||+||+ |+ ++++.+++.
T Consensus 183 lvEe~i~------g~--E~sv~~~~d 200 (422)
T 2xcl_A 183 VIEEYLS------GE--EFSLMAFVK 200 (422)
T ss_dssp EEEECCC------SE--EEEEEEEEE
T ss_pred EEEECCc------Cc--EEEEEEEEc
Confidence 9999998 44 566665553
No 45
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.40 E-value=6.7e-07 Score=97.49 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=52.4
Q ss_pred ccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEe----cCchHHHHHhhccCCCcccccCCCCCCCcccCcc
Q psy16684 105 MPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLF----KKLSEFEEWRENKDWSPKERKRSDDPNDIELIPE 180 (429)
Q Consensus 105 ~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
.|++..+.+ .....+.+...-+..+|+||..++.|+||.++ ++.+++...++.. .....
T Consensus 504 vP~~~~~~~-~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a----------------~~~~~ 566 (757)
T 3ln7_A 504 VPQSVEFTS-LEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIA----------------FREDK 566 (757)
T ss_dssp CCCEEEESC-HHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHH----------------HHHCS
T ss_pred CCCEEEECC-HHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHH----------------HhcCC
Confidence 577766642 22223333223345799999999999999999 7888877665421 11235
Q ss_pred ceeeeecccCccccCCceeeeEEEEEE
Q psy16684 181 VYVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 181 ~~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
.++||+||+ | .|+|+.|+-
T Consensus 567 ~vlVEefI~------G--~Ei~v~Vlg 585 (757)
T 3ln7_A 567 EVMVEDYLV------G--TEYRFFVLG 585 (757)
T ss_dssp SEEEEECCC------S--EEEEEEEET
T ss_pred cEEEEEcCC------C--cEEEEEEEC
Confidence 799999995 5 499998763
No 46
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.40 E-value=3.9e-06 Score=85.51 Aligned_cols=160 Identities=12% Similarity=0.106 Sum_probs=86.3
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ ++++..+.++. +-.+|+||..++.|+|+.++++.+++....+..... . ......+
T Consensus 136 ~p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~-----------~-~~~~~~~ 199 (433)
T 2dwc_A 136 TSRYMYATTLDELYEACEKI----GYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTK-----------A-RGSAEKI 199 (433)
T ss_dssp CCCEEEESSHHHHHHHHHHH----CSSEEEEECCC------EEECSGGGHHHHHHC---------------------CCE
T ss_pred CCCeeEeCCHHHHHHHHHhc----CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhh-----------c-ccCCCCE
Confidence 4666665 35666666654 236999999999999999999999998877532100 0 0024579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeee-cCCe-EEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCcc
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSF-SPLT-VWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKW 260 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~-~Pl~-~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~w 260 (429)
+||+||+. | .++++.++.... +.-. +.++.. .-... ..+ +. .+.|
T Consensus 200 lvEe~i~~-----g--~E~sv~~~~~~~~~G~~~~~~~~~-~~~~~-~~~------~~------------------~~~~ 246 (433)
T 2dwc_A 200 IVEEHIDF-----D--VEVTELAVRHFDENGEIVTTFPKP-VGHYQ-IDG------DY------------------HASW 246 (433)
T ss_dssp EEEECCCC-----S--EEEEECCEEEECTTSCEEEEEECC-EEEEE-SSS------SE------------------EEEE
T ss_pred EEEccCCC-----C--eeEEEEEEecccCCCCEeEEEecc-cceEE-EcC------EE------------------EEEE
Confidence 99999983 3 345555444310 1010 111110 00000 000 00 0001
Q ss_pred chHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 261 DIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 261 sl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
. +....+.+.++|.+++.+++.++ ++...+++||++|++ +||+||||..|+-+
T Consensus 247 ~------------p~~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 247 Q------------PAEISEKAEREVYRIAKRITDVL--------GGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp E------------SCCCCHHHHHHHHHHHHHHHHHH--------CSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred c------------CCCCCHHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 0 11112334556667766666655 246789999999988 89999999999865
No 47
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.40 E-value=2.5e-06 Score=86.59 Aligned_cols=171 Identities=17% Similarity=0.138 Sum_probs=94.2
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ +++...++++ -+-.+|+||..++.|+|+.++++.+++....+.... ... . ......+
T Consensus 121 ~p~~~~~~~~~e~~~~~~~----~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~----~~~---~---~g~~~~v 186 (412)
T 1vkz_A 121 TARFEVAETPEELREKIKK----FSPPYVIKADGLARGKGVLILDSKEETIEKGSKLII----GEL---I---KGVKGPV 186 (412)
T ss_dssp CCCEEEESSHHHHHHHHTT----SCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHH----TSS---S---TTCCSCE
T ss_pred CCCEEEECCHHHHHHHHHh----cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh----hcc---c---cCCCCeE
Confidence 3565555 3455554433 244799999999999999999999988876543100 000 0 0012379
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCC-CCccCcccccccccccccCCCcCCCCccc
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCK-DNFADNCMHLTNTAIQLSGENLSQGRKWD 261 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~-~~~~~~~~HLTN~siqk~~~~y~~g~~ws 261 (429)
+||+||+ |+ ++.+.+++.+ -.++..-. ...+.. .+.+ + .++ .|..-.
T Consensus 187 lvEe~i~------G~--E~sv~~~~dg---~~~~~~~~------~~~~~~~~~~~------~-------~~~--~g~~~~ 234 (412)
T 1vkz_A 187 VIDEFLA------GN--ELSAMAVVNG---RNFVILPF------VRDYKRLMDGD------R-------GPN--TGGMGS 234 (412)
T ss_dssp EEEECCC------SE--EEEEEEEEET---TEEEECCC------CEECCEEETTT------E-------EEE--CSCSEE
T ss_pred EEEECCc------Cc--EEEEEEEECC---CEEEEeee------eEeeeeccCCC------C-------CCC--CCCceE
Confidence 9999998 54 4455555432 12221100 000000 0000 0 000 000000
Q ss_pred hHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 262 IQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 262 l~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
. .+....+.+.++|++++.+++.++...- -.+-..+++||++|+++ ||+||||..|+...
T Consensus 235 ~----------~P~~l~~~~~~~i~~~a~~~~~~l~~~g---~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~ 294 (412)
T 1vkz_A 235 W----------GPVEIPSDTIKKIEELFDKTLWGVEKEG---YAYRGFLYLGLMLHDGD-PYILEYNVRLGDPE 294 (412)
T ss_dssp E----------ECCCCCHHHHHHHHHHHHHHHHHHHHTT---CCCEEEEEEEEEEETTE-EEEEEEESSCCTTH
T ss_pred E----------ECCCCCHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEEEEEECCC-cEEEEEecCCCCCc
Confidence 0 0111123455667777777777664311 13458899999999999 99999999998653
No 48
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.37 E-value=2.4e-06 Score=83.49 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=32.5
Q ss_pred ccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceee
Q psy16684 105 MPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVA 184 (429)
Q Consensus 105 ~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iv 184 (429)
.|+|+..++++..++.. ...+..+|+||..++.|+|++++++.+++....+ ...+++|
T Consensus 129 ~p~~~~~~~~~~~~~~~--~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~--------------------~~~~~lv 186 (331)
T 2pn1_A 129 HARTYATMASFEEALAA--GEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFS--------------------KNTDLIV 186 (331)
T ss_dssp CCCEESSHHHHHHHHHT--TSSCSCEEEEESBC-------------------------------------------CEEE
T ss_pred CCcEEecHHHhhhhhhc--ccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHH--------------------hCCCeEE
Confidence 57777766666555421 1224479999999999999999999888766542 1347999
Q ss_pred eecccCccccCCceeeeEE
Q psy16684 185 QKYITNPYLLEGRKFDMRM 203 (429)
Q Consensus 185 QkYI~~PlLi~GrKFDlRv 203 (429)
|+||+ |+-+.+.+
T Consensus 187 ee~i~------G~e~~v~~ 199 (331)
T 2pn1_A 187 QELLV------GQELGVDA 199 (331)
T ss_dssp EECCC------SEEEEEEE
T ss_pred EecCC------CcEEEEEE
Confidence 99998 65444443
No 49
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.34 E-value=6.7e-06 Score=84.31 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=50.1
Q ss_pred ccceeec--chhHHHHHHHHhcCCCce-EEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNM-WIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEV 181 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~-wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (429)
.|+++.+ ++++..+++++ +-. +|+||..++.|+|++++++.+++....+..... ... ......
T Consensus 143 ~p~~~~~~~~~~~~~~~~~~----g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~--------~~~--g~~~~~ 208 (452)
T 2qk4_A 143 TAQWKAFTKPEEACSFILSA----DFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQE--------KAF--GAAGET 208 (452)
T ss_dssp BCCEEEESSHHHHHHHHHHC----SSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-----------------CC
T ss_pred CCCeEEECCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhh--------hhc--cCCCCe
Confidence 4666655 35566666543 236 999999999999999999999988776532100 000 001357
Q ss_pred eeeeecccCccccCCceeeeEEEEEE
Q psy16684 182 YVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 182 ~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
++||+||+ |+ ++++.++.
T Consensus 209 ~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 209 IVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp EEEEECCC------SE--EEEEEEEE
T ss_pred EEEEECCC------CC--eEEEEEEE
Confidence 99999998 43 66666665
No 50
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.29 E-value=7.3e-06 Score=83.84 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=87.9
Q ss_pred chhH-HHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC
Q psy16684 112 PSET-ALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190 (429)
Q Consensus 112 p~e~-~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~ 190 (429)
++++ ..+.+++. ..+|+||..++.|+|+.++++.+++....+...... ........++||+||+-
T Consensus 141 ~~~~~~~~~~~~g----~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~----------~~~~~~~~~lvEe~i~g 206 (449)
T 2w70_A 141 DMDKNRAIAKRIG----YPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEA----------KAAFSNDMVYMEKYLEN 206 (449)
T ss_dssp CHHHHHHHHHHHC----SSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHH----------HHHHSCCCEEEEECCSS
T ss_pred HHHHHHHHHHHhC----CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHH----------HhhcCCCcEEEEeccCC
Confidence 4666 67776652 369999999999999999999988877654210000 00011457999999984
Q ss_pred ccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHH
Q psy16684 191 PYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLT 270 (429)
Q Consensus 191 PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~ 270 (429)
+ -++++-++....... +.+. .|.++.. ..+...... .| .
T Consensus 207 ~-------~e~~v~~~~~~~G~~-~~~~----~~~~~~~-------~~~~~~~~~-----~p-----~------------ 245 (449)
T 2w70_A 207 P-------RHVEIQVLADGQGNA-IYLA----ERDCSMQ-------RRHQKVVEE-----AP-----A------------ 245 (449)
T ss_dssp C-------EEEEEEEEECTTSCE-EEEE----EEEEEEE-------ETTEEEEEE-----ES-----C------------
T ss_pred C-------eEEEEEEEEcCCCCE-EEEe----ceecccc-------cCCcceeee-----CC-----c------------
Confidence 2 256666665421111 1111 1221110 000000000 00 0
Q ss_pred HccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 271 AMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 271 ~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
. ...+.+.++|.+++.+++.++ ++-..+++||++|+ +.||+||||..|+-.
T Consensus 246 ---~-~l~~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~-~~~~viEiN~R~~~~ 296 (449)
T 2w70_A 246 ---P-GITPELRRYIGERCAKACVDI--------GYRGAGTFEFLFEN-GEFYFIEMNTRIQVE 296 (449)
T ss_dssp ---T-TCCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEECSCCTT
T ss_pred ---c-cCCHHHHHHHHHHHHHHHHHc--------CCCceEEEEEEEEC-CCEEEEEEECCCCcc
Confidence 0 011234456666666666654 13367899999998 889999999999643
No 51
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.27 E-value=1.1e-05 Score=83.70 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=49.1
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. ++...+.++. +-.+|+||..++.|+|+.++++.+++.+..+.... ................+
T Consensus 154 vp~~~~v~s~ee~~~~~~~l----g~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~----~~~~~~~~~a~~~~~~v 225 (474)
T 3vmm_A 154 SIKNKRVTTLEDFRAALEEI----GTPLILKPTYLASSIGVTLITDTETAEDEFNRVND----YLKSINVPKAVTFEAPF 225 (474)
T ss_dssp CCCEEEECSHHHHHHHHHHS----CSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHH----HHTTSCCCTTCCCSCSE
T ss_pred CCCeEEECCHHHHHHHHHHc----CCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHH----HHhhccccccccCCCeE
Confidence 56666663 4566666554 34689999999999999999999888766542100 00000000000123689
Q ss_pred eeeecccCc
Q psy16684 183 VAQKYITNP 191 (429)
Q Consensus 183 IvQkYI~~P 191 (429)
+||+||+-+
T Consensus 226 lVEe~I~G~ 234 (474)
T 3vmm_A 226 IAEEFLQGE 234 (474)
T ss_dssp EEEECCCBC
T ss_pred EEEeCCCCc
Confidence 999999954
No 52
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.22 E-value=8.6e-06 Score=85.76 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=85.1
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-.+|+||..++.|+|+.++++.+++....+.... ......++||+||+.|
T Consensus 218 ~ea~~~a~~i----gyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~--------------~~~~~~vlVEe~I~g~- 278 (540)
T 3glk_A 218 DEGLEAAERI----GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQS--------------EIPGSPIFLMKLAQHA- 278 (540)
T ss_dssp HHHHHHHHHH----CSSEEEEETTCC----EEEECSTTTHHHHHHHHHH--------------HSTTCCEEEEECCSSE-
T ss_pred HHHHHHHHhc----CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh--------------hccCCCEEEEEecCCC-
Confidence 4455555554 34789999999999999999999998876643100 1124579999999842
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
-++.+-++..... -.+.++ .|-|+. |..+..+...
T Consensus 279 ------rei~V~vl~d~~G-~vv~l~----~rd~s~-------------------qr~~~k~ie~--------------- 313 (540)
T 3glk_A 279 ------RHLEVQILADQYG-NAVSLF----GRDCSI-------------------QRRHQKIVEE--------------- 313 (540)
T ss_dssp ------EEEEEEEEECTTS-CEEEEE----EEEEEE-------------------C---CCSEEE---------------
T ss_pred ------cEEEEEEEEcCCC-CEEEEe----ceeeee-------------------eecccceEEe---------------
Confidence 3555555554311 112111 122211 1000000000
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 273 HGRE-IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~~-~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+.. ....+.++|.+++.+++.++ ++....++||++|.++++|+||||+.|+-+
T Consensus 314 ~Pa~~l~~~~~~~l~~~a~~~~~al--------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 314 APATIAPLAIFEFMEQCAIRLAKTV--------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 368 (540)
T ss_dssp ESCTTSCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTSCEEEEEEECSCCTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHc--------CCccceEEEEEEcCCCCEEEEEEECCCCCc
Confidence 0100 12344556666666666554 245678899999999999999999999753
No 53
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.21 E-value=3.7e-05 Score=78.91 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=86.1
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
+++...+.++. +..+|+||..++.|+|+.++++.+++....+...... + .......++||+||+.+
T Consensus 146 ~~~~~~~~~~~----g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~----~------~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 146 LEDVVAFAEAH----GYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEA----K------AAFGSDEVYVEKLIENP 211 (461)
T ss_dssp HHHHHHHHHHH----CSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHH----H------HHTSCCCEEEEECCCSC
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHH----H------hhcCCCcEEEEECCCCC
Confidence 35666666654 2379999999999999999999998877654210000 0 00123679999999842
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
+ ++++-++..... -.+.++ -|.|+.. . .|..-..+ . ..
T Consensus 212 -----~--e~~v~v~~~~~G-~~~~~~----~~~~~~~-------~--~~~~~~~~---~----P~-------------- 249 (461)
T 2dzd_A 212 -----K--HIEVQILGDYEG-NIVHLY----ERDCSVQ-------R--RHQKVVEV---A----PS-------------- 249 (461)
T ss_dssp -----E--EEEEEEEECTTC-CEEEEE----EEEEEEE-------E--TTEEEEEE---E----SC--------------
T ss_pred -----e--EEEEEEEEcCCC-CEEEEE----ecccccc-------c--cccceEEE---C----Cc--------------
Confidence 2 456655554211 111111 1111100 0 00000000 0 00
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 272 MHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 272 ~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
....+.+.++|.+++.+.+.++ ++-...++||++|+ +.||+||||..|+.
T Consensus 250 ---~~l~~~~~~~i~~~a~~~~~~l--------g~~g~~~ve~~~~~-~~~~viEiN~R~~~ 299 (461)
T 2dzd_A 250 ---VSLSDELRQRICEAAVQLMRSV--------GYVNAGTVEFLVSG-DEFYFIEVNPRIQV 299 (461)
T ss_dssp ---TTSCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEET-TEEEEEEEESSCCG
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHc--------CCCcceEEEEEEeC-CCEEEEEEECCCCC
Confidence 0011234456666666666654 12235589999998 88999999999974
No 54
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.21 E-value=1.5e-05 Score=84.69 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-.+|+||..++.|+||.++++.+++...++.... ......++||+||+.|
T Consensus 234 eea~~~a~~i----GyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~--------------~~~~~~vlVEeyI~g~- 294 (587)
T 3jrx_A 234 DEGLEAAERI----GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQS--------------EIPGSPIFLMKLAQHA- 294 (587)
T ss_dssp HHHHHHHHHH----CSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHH--------------HSTTCCEEEEECCCSC-
T ss_pred HHHHHHHHhc----CCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHh--------------hccCCCEEEEEecCCC-
Confidence 4455555554 34789999999999999999999998876643100 1124579999999852
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
-++.+-++..... -.+.++ .|-|+. |..+..+...
T Consensus 295 ------rei~V~vl~D~~G-~vv~l~----~rd~si-------------------qrr~qk~ie~--------------- 329 (587)
T 3jrx_A 295 ------RHLEVQILADQYG-NAVSLF----GRDCSI-------------------QRRHQKIVEE--------------- 329 (587)
T ss_dssp ------EEEEEEEEECSSS-CEEEEE----EEEEEE-------------------ESSSCEEEEE---------------
T ss_pred ------cEEEEEEEEcCCC-CEEEEe----eeeccc-------------------cccccceeEe---------------
Confidence 2555555554321 112211 122211 1001000000
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 273 HGRE-IVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~~-~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+.. ..+.+.++|.+++.+++.++ ++....++||++|.++++|+||||+.|+-+
T Consensus 330 aPa~~l~~~~~~~i~~~A~~~a~al--------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 330 APATIAPLAIFEFMEQCAIRLAKTV--------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 384 (587)
T ss_dssp ESCCSSCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEECSSSCEEEEEEESSCCTT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHc--------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc
Confidence 0100 12344556776666666655 244678899999999999999999999743
No 55
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.13 E-value=6.9e-06 Score=79.56 Aligned_cols=210 Identities=13% Similarity=0.156 Sum_probs=122.4
Q ss_pred hhcCCCceEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhH-----HHHHHH--Hh----c
Q psy16684 56 SSMKNHQKIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSET-----ALFLQE--AR----R 124 (429)
Q Consensus 56 ~~l~~~q~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~-----~~f~~~--~~----~ 124 (429)
..+..--.||...-...+..|-..+..|.+ .+ ==.|+|.++..+- ..|++. +- .
T Consensus 78 ~~lr~p~~INd~~~q~~~~DK~~~~~iL~~-------~g--------IPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~ 142 (330)
T 3t7a_A 78 AKLRNPFVINDLNMQYLIQDRREVYSILQA-------EG--------ILLPRYAILNRDPNNPKECNLIEGEDHVEVNGE 142 (330)
T ss_dssp HHHHCCEESBCSTHHHHHTBHHHHHHHHHH-------TT--------CCCCCEEEECCBTTBGGGSSEEECSSEEEETTE
T ss_pred HHHhCCceeCCHHHHHHHHHHHHHHHHHHH-------cC--------CCCCCEEEEeCCCCCccccceeccchhhhhccc
Confidence 344455578998887778888887777765 11 1267777774321 111110 00 0
Q ss_pred CCCceEEEcCCCCC-----------CCCCE-EEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 125 DSHNMWIVKPSGGS-----------QGRGI-LLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 125 ~~~~~wI~KP~~~s-----------~G~GI-~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
.-+..+|.||..|+ +|-|. .+|++...-.... +. +.. ......||+|+||..
T Consensus 143 ~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~--------~~---~~~---vr~~~~~i~QEFI~~-- 206 (330)
T 3t7a_A 143 VFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVY--------SP---ESN---VRKTGSYIYEEFMPT-- 206 (330)
T ss_dssp EEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEE--------ES---CCS---CCSSSCEEEEECCCC--
T ss_pred cccCCeeEcccccccCcceeecccccCCchhhhhhhhCCccccc--------Ch---hhh---hccCCcEEEEeccCC--
Confidence 01246899999997 88888 6776654211100 00 000 234678999999985
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
+| -|||+||+-.. +-....|.|... +. ---+|.+ .|..-
T Consensus 207 --~G--~DIRv~vVG~~--------vv~Am~R~sp~~------~G--~~r~N~~---------gG~~~------------ 245 (330)
T 3t7a_A 207 --DG--TDVKVYTVGPD--------YAHAEARKSPAL------DG--KVERDSE---------GKEVR------------ 245 (330)
T ss_dssp --SS--EEEEEEEESTT--------CEEEEEEECTTS------SC--BCCBCTT---------SCBCC------------
T ss_pred --CC--ceEEEEEECCE--------EEEEEEEeCCCC------CC--cEEEcCC---------CCcee------------
Confidence 46 69999988654 123456765310 00 0122322 11110
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHHHHHHHHHHH
Q psy16684 273 HGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDAL 352 (429)
Q Consensus 273 ~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~lk~~li~d~l 352 (429)
.. -.|-++.+++++++..++ .-.+.|+|++.++ ++|+++|||.-|-...+ ..-++-...+|++++
T Consensus 246 ~~----v~Lt~eek~iA~kaa~a~---------G~~v~GVDlLrs~-~~~~V~EVNg~~fvk~~-~~yyd~~a~il~~~~ 310 (330)
T 3t7a_A 246 YP----VILNAREKLIAWKVCLAF---------KQTVCGFDLLRAN-GQSYVCDVNGFSFVKNS-MKYYDDCAKILGNIV 310 (330)
T ss_dssp EE----CCCCHHHHHHHHHHHHHT---------TBSEEEEEEEEET-TEEEEEEEEESCCCSSC-HHHHHHHHHHHHHHH
T ss_pred ee----ecCCHHHHHHHHHHHHHh---------CCceEEEEEEEEC-CccEEEEeCCCccccCc-hhHHHHHHHHHHHHH
Confidence 01 112245667777777766 3457899999985 56999999999988866 334444555666554
No 56
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.11 E-value=3e-05 Score=81.83 Aligned_cols=150 Identities=15% Similarity=0.161 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-.+|+||..++.|+|+.++++.+++....+.... ......++||+||+.
T Consensus 224 ~e~~~~~~~~----g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~--------------~~~~~~vlvEe~i~g-- 283 (554)
T 1w96_A 224 EDGLQKAKRI----GFPVMIKASEGGGGKGIRQVEREEDFIALYHQAAN--------------EIPGSPIFIMKLAGR-- 283 (554)
T ss_dssp HHHHHHHHHH----CSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHH--------------HSTTCCEEEEECCCS--
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHh--------------hccCCCEEEEEecCC--
Confidence 4444555544 23799999999999999999999988876643100 112457999999984
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCc-CCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGI-KYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~-~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
|+ ++.+-++...... .+.++ .|.|+. .+. ..+.+. .| .
T Consensus 284 ---~~--e~sv~vl~d~~G~-vv~l~----~~~~~~~~~~-----~k~~~~--------~P-----~------------- 322 (554)
T 1w96_A 284 ---AR--HLEVQLLADQYGT-NISLF----GRDCSVQRRH-----QKIIEE--------AP-----V------------- 322 (554)
T ss_dssp ---CE--EEEEEEEECTTSC-EEEEE----EEEEEEEETT-----EEEEEE--------ES-----C-------------
T ss_pred ---Cc--EEEEEEEEcCCCC-EEEEe----eeeeeeEeec-----cceeee--------CC-----C-------------
Confidence 33 4555555443111 11111 111110 000 000000 00 0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEec-CCccEEEEEeecCCCCC
Q psy16684 272 MHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQ-DNLNVCLLEANAAPSMK 334 (429)
Q Consensus 272 ~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD-~~~kpWLLEVN~~Psl~ 334 (429)
. .....+.++|.+++.+++.++ ++-..+++||++| .+++||+||||..|+-.
T Consensus 323 --~-~l~~~~~~~i~~~a~~~~~al--------g~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 323 --T-IAKAETFHEMEKAAVRLGKLV--------GYVSAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp --C-SSCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred --c-CCCHHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 0 011234456666666666554 1336789999998 88999999999998765
No 57
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.08 E-value=7.6e-05 Score=74.45 Aligned_cols=144 Identities=12% Similarity=0.090 Sum_probs=86.3
Q ss_pred cceeec--chhHHHHHHHHhcCCCceEEEcCCC-CCCCCCEEEecC--chHHHHHhhccCCCcccccCCCCCCCcccCcc
Q psy16684 106 PMTFEI--PSETALFLQEARRDSHNMWIVKPSG-GSQGRGILLFKK--LSEFEEWRENKDWSPKERKRSDDPNDIELIPE 180 (429)
Q Consensus 106 P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~-~s~G~GI~l~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
|++..+ ++++..+.+++. -.+|+||.. |+.|+|+.++++ .+++.... ..
T Consensus 95 p~~~~v~~~~e~~~~~~~~G----~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~--------------------~~-- 148 (355)
T 3eth_A 95 APWQLLAERSEWPAVFDRLG----ELAIVKRRTGGYDGRGQWRLRANETEQLPAEC--------------------YG-- 148 (355)
T ss_dssp CCEEEECCGGGHHHHHHHHC----SEEEEEESSSCCTTTTEEEEETTCGGGSCGGG--------------------TT--
T ss_pred CCEEEECCHHHHHHHHHHcC----CCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh--------------------hC--
Confidence 444444 467777777653 479999998 489999999998 87764311 11
Q ss_pred ceeeeecccCccccCCceeeeEEEEEEeee-----cCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcC
Q psy16684 181 VYVAQKYITNPYLLEGRKFDMRMYVLVTSF-----SPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLS 255 (429)
Q Consensus 181 ~~IvQkYI~~PlLi~GrKFDlRvyvLvts~-----~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~ 255 (429)
.+|||+||+. ++ .+-+-++.... -|...-.+++|....+
T Consensus 149 ~vivEe~I~~-----~~--Eisv~v~~~~~G~~~~~p~~e~~~~~g~~~~~----------------------------- 192 (355)
T 3eth_A 149 ECIVEQGINF-----SG--EVSLVGARGFDGSTVFYPLTHNLHQDGILRTS----------------------------- 192 (355)
T ss_dssp TEEEEECCCC-----SE--EEEEEEEECTTSCEEECCCEEEEEETTEEEEE-----------------------------
T ss_pred CEEEEEccCC-----Cc--EEEEEEEEcCCCCEEEECCEEEEeeCCeEEEE-----------------------------
Confidence 5999999983 23 33333332210 0111111111111110
Q ss_pred CCCccchHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 256 QGRKWDIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 256 ~g~~wsl~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
| .+....+.+.+++++++.+++.++ ++...+++||+++++ ++|++|||..|+-+.
T Consensus 193 ----~------------~pa~l~~~~~~~~~~~a~~i~~aL--------g~~G~~~vEf~~~~~-~~~v~EinpR~~~sg 247 (355)
T 3eth_A 193 ----V------------AFPQANAQQQARAEEMLSAIMQEL--------GYVGVMAMECFVTPQ-GLLINELAPRVHNSG 247 (355)
T ss_dssp ----E------------ECSSCCHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETT-EEEEEEEESSCCGGG
T ss_pred ----E------------CCCCCCHHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEECC-cEEEEEeeCCCCCCc
Confidence 0 011112344556777766666654 366899999999974 799999999998754
Q ss_pred C
Q psy16684 336 T 336 (429)
Q Consensus 336 ~ 336 (429)
.
T Consensus 248 ~ 248 (355)
T 3eth_A 248 H 248 (355)
T ss_dssp T
T ss_pred c
Confidence 3
No 58
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.08 E-value=4.7e-05 Score=86.43 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=83.0
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|++..+ ++|...+.++.. -.+|+||..++.|+|+.++.+.+++..+.+.... .....++
T Consensus 689 ~P~~~~~~s~eea~~~~~~ig----~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~--------------~~~~~~v 750 (1073)
T 1a9x_A 689 QPANATVTAIEMAVEKAKEIG----YPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVS--------------VSNDAPV 750 (1073)
T ss_dssp CCCEEECCSHHHHHHHHHHHC----SSEEEEC-------CEEEECSHHHHHHHHHHCC----------------------
T ss_pred CCCceEECCHHHHHHHHHHcC----CCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHh--------------hCCCCcE
Confidence 5677666 356777776652 3699999999999999999999999888754210 1134679
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+.+ +.+++.+ +... -.+.++ +.. +.+...+ .|.- ..++.+..
T Consensus 751 lvEefI~g~-----~E~~V~~--l~d~---~~v~~~--~i~----e~~~~~g-----~~~g-----------d~~~~~P~ 798 (1073)
T 1a9x_A 751 LLDHFLDDA-----VEVDVDA--ICDG---EMVLIG--GIM----EHIEQAG-----VHSG-----------DSACSLPA 798 (1073)
T ss_dssp EEEBCCTTC-----EEEEEEE--EECS---SCEEEE--EEE----EESSCTT-----SCGG-----------GCCEEESC
T ss_pred EEEEccCCC-----cEEEEEE--EEEC---CeEEEE--eeE----EEEeccC-----CccC-----------CceEEecC
Confidence 999999842 2444443 3332 112111 110 1110000 1100 01111110
Q ss_pred HHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 263 QNLRLFLTAMHGREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 263 ~~l~~~l~~~~g~~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
....+.+.++|.+++.+++.++ ++-.++++||+++ ++++|+||||..|+-
T Consensus 799 ------------~~l~~~~~~~i~~~a~~i~~aL--------g~~G~~~vdf~v~-~~~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 799 ------------YTLSQEIQDVMRQQVQKLAFEL--------QVRGLMNVQFAVK-NNEVYLIEVNPRAAR 848 (1073)
T ss_dssp ------------SSCCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEC-SSCEEEEEEECSCCT
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEE-CCeEEEEEEECCCcc
Confidence 0112334556666666665554 2458999999997 778999999999984
No 59
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=98.07 E-value=5.8e-06 Score=80.66 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCC
Q psy16684 281 LFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKA 335 (429)
Q Consensus 281 l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~ 335 (429)
+.+++.+++.+++.++ +++....|+||++| ++||+||||..|+.+.
T Consensus 208 ~~~~i~~~a~~~~~~l-------~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~ 253 (305)
T 3df7_A 208 VKREVVEEAVRAVECV-------EGLNGYVGVDIVYS--DQPYVIEINARLTTPV 253 (305)
T ss_dssp HHHHHHHHHHHHHTTS-------TTCCEEEEEEEEES--SSEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHc-------CCCcCceEEEEEEC--CCEEEEEEcCCCCCCH
Confidence 3455666655555443 13567899999997 6899999999999874
No 60
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.07 E-value=1.2e-05 Score=86.76 Aligned_cols=155 Identities=14% Similarity=0.207 Sum_probs=85.1
Q ss_pred chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCc
Q psy16684 112 PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNP 191 (429)
Q Consensus 112 p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~P 191 (429)
++++..+.++. +-.+|+||..++.|+|++++++.+++...++..... ... ......++||+||+.|
T Consensus 167 ~~e~~~~a~~i----gyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~e---------a~~-~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 167 LETFRREAGRI----GYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQRE---------AKA-AFGDARMLVEKYLLKP 232 (675)
T ss_dssp TTHHHHHHHHS----CSSBCCBCCC------CCCBCCTTTHHHHHSCCCC------------------CCCBCCBCCSSC
T ss_pred HHHHHHHHHhC----CCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHH---------HHH-hcCCCcEEEEeecCCC
Confidence 45666666654 336899999999999999999999998877532100 000 1124689999999964
Q ss_pred cccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHH
Q psy16684 192 YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTA 271 (429)
Q Consensus 192 lLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~ 271 (429)
+ ++.+-++.... --.+++ +.|-|+... .| ......
T Consensus 233 -----r--eiev~v~~d~~-G~vv~l----~~rd~s~qr---------~~----------qk~ie~-------------- 267 (675)
T 3u9t_A 233 -----R--HVEIQVFADRH-GHCLYL----NERDCSIQR---------RH----------QKVVEE-------------- 267 (675)
T ss_dssp -----B--CEEEEEEECSS-SCEEEE----EEEECCCBS---------SS----------SBCEEE--------------
T ss_pred -----c--EEEEEEEEcCC-CCEEEE----eccccceee---------cc----------ceEEEE--------------
Confidence 2 44454444431 112221 123232110 01 000000
Q ss_pred cccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 272 MHGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 272 ~~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+. ...+.+.++|.+++.+++.++ +....+++||++|+++++|+||||..|+-.
T Consensus 268 -~Pa~~l~~~~~~~l~~~a~~~~~al--------g~~G~~~vEf~~~~dG~~~~iEiNpR~~~~ 322 (675)
T 3u9t_A 268 -APAPGLGAELRRAMGEAAVRAAQAI--------GYVGAGTVEFLLDERGQFFFMEMNTRLQVE 322 (675)
T ss_dssp -ESCSSCCHHHHHHHHHHHHHHHHHT--------TCCSEEEEECCBCTTSCBCBCEEESSCCTT
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHc--------CCccceEEEEEEcCCCCEEEEeccccccCC
Confidence 000 012344556777666666554 234678999999999999999999999753
No 61
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=97.86 E-value=1.5e-05 Score=86.20 Aligned_cols=173 Identities=14% Similarity=0.164 Sum_probs=55.0
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
++...+.++. +-.+|+||..++.|+|++++++.+++...++.... +... ......++||+||+.|
T Consensus 142 ~e~~~~a~~i----gyPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~---------ea~~-~fg~~~vlvEe~I~g~- 206 (681)
T 3n6r_A 142 DEAVKISNQI----GYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKN---------EAAN-SFGDDRIFIEKFVTQP- 206 (681)
T ss_dssp ---------------------------------------------------------------------------CCSC-
T ss_pred HHHHHHHHhc----CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHH---------HHHH-hCCCCcEEEEeccCCC-
Confidence 4444444433 34689999999999999999999888766542110 0000 1124679999999964
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
-++.+-++.........+ ..|-|+. |..+......
T Consensus 207 ------rei~V~v~~d~~G~vv~l-----~~rd~s~-------------------qr~~~k~~e~--------------- 241 (681)
T 3n6r_A 207 ------RHIEIQVLCDSHGNGIYL-----GERECSI-------------------QRRNQKVVEE--------------- 241 (681)
T ss_dssp ------EEEEEEEECCSSSCCEEE-----EEEECCC-------------------EETTEECEEE---------------
T ss_pred ------cEEEEEEEEeCCCCEEEE-----eeeecce-------------------eccCccEEEe---------------
Confidence 355555555432112111 1222211 0000000000
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCCCCChhhHHH-HHHHHHH
Q psy16684 273 HGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMKATDDHDYKL-KYNLIQD 350 (429)
Q Consensus 273 ~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~~~~~~d~~l-k~~li~d 350 (429)
.+. ...+.+.++|.+++.+++.++ +.-..+.+||++|+++++|+||||+.|+-. .+....+ -..+++-
T Consensus 242 ~Pa~~l~~~~~~~l~~~a~~~~~al--------g~~G~~~vEf~~d~dg~~~~lEiNpR~~~~--~~~te~~tGvdl~~~ 311 (681)
T 3n6r_A 242 APSPFLDEATRRAMGEQAVALAKAV--------GYASAGTVEFIVDGQKNFYFLEMNTRLQVE--HPVTELITGVDLVEQ 311 (681)
T ss_dssp ESCSSCCHHHHHHHHHHHHHHHHTT--------TCCSEEEEEEEECTTSCCCCCEEECSCCTT--HHHHHHHHTCCHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHc--------CCCceEEEEEEEeCCCCEEEEecccccCCC--cHHhHHHhCCCHHHH
Confidence 000 012344556666666655544 123567899999999999999999999754 2222211 1245555
Q ss_pred HHhcc
Q psy16684 351 ALNVI 355 (429)
Q Consensus 351 ~l~lv 355 (429)
.++++
T Consensus 312 ~l~~a 316 (681)
T 3n6r_A 312 MIRVA 316 (681)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.86 E-value=0.00015 Score=82.33 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=92.5
Q ss_pred ccceeecc--hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 105 MPMTFEIP--SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 105 ~P~T~~Lp--~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.|+++.+. ++...+.++. +-.+|+||..++.|+|+.++++.+++.+....... ......+
T Consensus 143 vp~~~~v~~~~ea~~~~~~i----g~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~--------------~~~~~~v 204 (1073)
T 1a9x_A 143 TARSGIAHTMEEALAVAADV----GFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLD--------------LSPTKEL 204 (1073)
T ss_dssp CCSEEEESSHHHHHHHHHHH----CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHH--------------HCTTSCE
T ss_pred CCCEEEECCHHHHHHHHHHc----CCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHh--------------hCCCCcE
Confidence 47777663 5566666654 23799999999999999999999998876642100 1123579
Q ss_pred eeeecccCccccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccch
Q psy16684 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDI 262 (429)
Q Consensus 183 IvQkYI~~PlLi~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl 262 (429)
+||+||+-+ + ++.+-|+....... +.+ .+.+.++. ...| |..++ .+
T Consensus 205 lvEe~I~G~-----~--E~~v~v~~d~~g~~-v~~-------~~~e~~dp-----~~v~-~g~s~-------------~~ 250 (1073)
T 1a9x_A 205 LIDESLIGW-----K--EYEMEVVRDKNDNC-IIV-------CSIENFDA-----MGIH-TGDSI-------------TV 250 (1073)
T ss_dssp EEEECCTTS-----E--EEEEEEEECTTCCE-EEE-------EEEEESSC-----TTSC-GGGSC-------------EE
T ss_pred EEEEccCCC-----e--EEEEEEEEeCCCCE-EEE-------EEEecccC-----Cccc-cCcEE-------------EE
Confidence 999999842 2 45555555421111 111 11112211 1112 10000 00
Q ss_pred HHHHHHHHHcccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcce-EEEEEEEEecC-CccEEEEEeecCCC
Q psy16684 263 QNLRLFLTAMHGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCF-ELFGFDILLQD-NLNVCLLEANAAPS 332 (429)
Q Consensus 263 ~~l~~~l~~~~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~F-el~G~D~liD~-~~kpWLLEVN~~Ps 332 (429)
.+. ...+...++|.+++.+++.++ ++- ...++||++|. ++++|+||||..|+
T Consensus 251 ----------~Pa~~l~~~~~~~l~~~a~~i~~~l--------g~~~G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 251 ----------APAQTLTDKEYQIMRNASMAVLREI--------GVETGGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp ----------ESCCSCCHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred ----------ecCCCCCHHHHHHHHHHHHHHHHHc--------CcccCceEEEEEEECCCCCEEEEEecCCCC
Confidence 010 012334556777766666655 133 68899999997 79999999996655
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.64 E-value=0.00013 Score=83.18 Aligned_cols=154 Identities=12% Similarity=0.136 Sum_probs=49.0
Q ss_pred hhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 113 SETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 113 ~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
+++..+.++. +-.+|+||..++.|+|+.++++.+++...++.... +.. . ......++||+||+.
T Consensus 161 eea~~~a~~i----gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~--------~a~-~-~fg~~~vlVEefI~g-- 224 (1165)
T 2qf7_A 161 AEVAKMAAAI----GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKR--------EAM-A-AFGKDEVYLEKLVER-- 224 (1165)
T ss_dssp -------------------------------------------------------------------------CCCSS--
T ss_pred HHHHHHHHhc----CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHH--------HHH-h-hcCCCcEEEEEeccC--
Confidence 4444444432 34789999999999999999999888766542110 000 0 112457999999985
Q ss_pred ccCCceeeeEEEEEEeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHc
Q psy16684 193 LLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM 272 (429)
Q Consensus 193 Li~GrKFDlRvyvLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~ 272 (429)
|+ ++.+-++...... .+.++ -|-|+.. . .|..-..+
T Consensus 225 ---g~--EisV~vl~D~~G~-vv~l~----~r~~s~~-------r--~~~~~~e~------------------------- 260 (1165)
T 2qf7_A 225 ---AR--HVESQILGDTHGN-VVHLF----ERDCSVQ-------R--RNQKVVER------------------------- 260 (1165)
T ss_dssp ---EE--EEEEEEEECTTSC-EEEEE----EEEEEEE-------E--TTEEEEEE-------------------------
T ss_pred ---Cc--EEEEEEEEcCCCc-EEEEE----eecccce-------e--cccceEEe-------------------------
Confidence 23 5555555543111 12221 2222110 0 00000000
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEec-CCccEEEEEeecCCCCC
Q psy16684 273 HGR-EIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQ-DNLNVCLLEANAAPSMK 334 (429)
Q Consensus 273 ~g~-~~~~~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD-~~~kpWLLEVN~~Psl~ 334 (429)
.+. ...+.+.++|.+++.+++.++ ++-..+++||++| +++++|+||||..|+-.
T Consensus 261 ~Pa~~l~~~~~~~i~~~a~~i~~al--------g~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 261 APAPYLSEAQRQELAAYSLKIAGAT--------NYIGAGTVEYLMDADTGKFYFIEVNPRIQVE 316 (1165)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHc--------CCCcceeEEEEEECCCCCEEEEEEEcCCCCC
Confidence 000 011334556666666666554 2335678999999 88999999999999853
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.61 E-value=0.00023 Score=81.01 Aligned_cols=143 Identities=15% Similarity=0.272 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEE
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvL 206 (429)
+-.+|+||..++.|+|++++++.+++....+.... .. .. ......++||+||+.| + ++.+-++
T Consensus 155 GyPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~--------~a-~~-~fg~~~vlVEeyI~G~-----r--eieV~vl 217 (1150)
T 3hbl_A 155 GFPLMIKATSGGGGKGMRIVREESELEDAFHRAKS--------EA-EK-SFGNSEVYIERYIDNP-----K--HIEVQVI 217 (1150)
T ss_dssp CSSEEEECCC-------CEECCSSSCTHHHHSSSS--------SC-C-------CBEEECCCSSC-----E--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHH--------HH-Hh-hcCCCcEEEEEccCCC-----c--EEEEEEE
Confidence 34789999999999999999999888776653210 00 00 1124689999999864 2 3444444
Q ss_pred EeeecCCeEEEEcceEEEEcCcCCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHcccc-chHHHHHHHH
Q psy16684 207 VTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGR-EIVDELFQKI 285 (429)
Q Consensus 207 vts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~-~~~~~l~~~I 285 (429)
...... .+.++ -|-|+... .|-.-... .+. ...+.+.++|
T Consensus 218 ~d~~G~-vv~l~----er~~s~qr---------~~~k~~e~-------------------------~Pa~~l~~~~~~~l 258 (1150)
T 3hbl_A 218 GDEHGN-IVHLF----ERDCSVQR---------RHQKVVEV-------------------------APSVGLSPTLRQRI 258 (1150)
T ss_dssp ECSSSC-EEEEE----EEEEEEES---------SSCEEEEE-------------------------SSCSSCCHHHHHHH
T ss_pred EeCCCC-EEEEE----eeccceec---------cCceeEEe-------------------------cCCCCCCHHHHHHH
Confidence 443111 11111 12121100 00000000 000 1123344566
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+++.+++.++ ++-....+||++|++ ++|+||||..|+-.
T Consensus 259 ~~~a~~~~~al--------G~~G~~~vEflvd~d-~~y~iEINpR~~g~ 298 (1150)
T 3hbl_A 259 CDAAIQLMENI--------KYVNAGTVEFLVSGD-EFFFIEVNPRVQVE 298 (1150)
T ss_dssp HHHHHHHHHHT--------TCCEEEEEEEEEETT-EEEEEEEECSCCTT
T ss_pred HHHHHHHHHHc--------CCCceEEEEEEEECC-eEEEEEEeCCCCCC
Confidence 66666666554 234567899999998 99999999999743
No 65
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.60 E-value=9.8e-05 Score=73.81 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCCC
Q psy16684 280 ELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSMK 334 (429)
Q Consensus 280 ~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl~ 334 (429)
.+.+++.+++.+.+.++.+.+. ......+++++.++.+++++++|||..|+=.
T Consensus 266 ~~~~~a~~~a~~v~~al~~~~~--~~~~G~~~vE~fvt~dg~i~V~EIapR~gGg 318 (361)
T 2r7k_A 266 SLLPQVFEMGDKLVAKAKELVP--PGMIGPFCLQSLCNENLELVVFEMSARVDGG 318 (361)
T ss_dssp GGHHHHHHHHHHHHHHHHHHST--TCCCEEEEEEEEECTTSCEEEEEEESSBCGG
T ss_pred HHHHHHHHHHHHHHHHHHhhcc--CCccceEEEEEEEcCCCCEEEEEEcCCCCCC
Confidence 3445677777777777654332 2468899999999999999999999988754
No 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.60 E-value=0.00024 Score=81.33 Aligned_cols=141 Identities=11% Similarity=0.104 Sum_probs=44.2
Q ss_pred ceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEEEEE
Q psy16684 128 NMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVLV 207 (429)
Q Consensus 128 ~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvyvLv 207 (429)
-.+|+||..++.|+|+.++++.+++....+.... +. . .......++||+||+. .-++.+-++.
T Consensus 181 yPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~--------~a-~-~~~~~~~vlVEeyI~G-------~rEisV~vl~ 243 (1236)
T 3va7_A 181 YPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQH--------QG-K-SYFGDAGVFMERFVNN-------ARHVEIQMMG 243 (1236)
T ss_dssp --------------------------------------------------------------C-------CEEEEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHH--------HH-H-hccCCCcEEEeeccCC-------CeEEEEEEEe
Confidence 4689999999999999999999888776543110 00 0 0113457999999984 2355555555
Q ss_pred eeecCCeEEEEcceEEEEcCc-CCCCCCccCcccccccccccccCCCcCCCCccchHHHHHHHHHcccc-chHHHHHHHH
Q psy16684 208 TSFSPLTVWIARDGFARIAGI-KYCKDNFADNCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAMHGR-EIVDELFQKI 285 (429)
Q Consensus 208 ts~~Pl~~y~y~~g~~R~a~~-~y~~~~~~~~~~HLTN~siqk~~~~y~~g~~wsl~~l~~~l~~~~g~-~~~~~l~~~I 285 (429)
.... ..+.+ ..|-|+. .+ .....+. .+. ...+.+.++|
T Consensus 244 Dg~g-~vv~l----~~rd~s~qr~-----~~k~~e~------------------------------~Pa~~l~~~~~~~l 283 (1236)
T 3va7_A 244 DGFG-KAIAI----GERDCSLQRR-----NQKVIEE------------------------------TPAPNLPEATRAKM 283 (1236)
T ss_dssp ESSS-CEEEE----EEEEEEEEET-----TEEEEEE------------------------------ESCSSCCHHHHHHH
T ss_pred cCCc-eEEEE----eeeeeeeeec-----CcceEEE------------------------------cCCCCCCHHHHHHH
Confidence 4311 11111 1111110 00 0000000 000 0123445566
Q ss_pred HHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCC-ccEEEEEeecCCCC
Q psy16684 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDN-LNVCLLEANAAPSM 333 (429)
Q Consensus 286 ~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~-~kpWLLEVN~~Psl 333 (429)
.+++.+++.++ ++-...++||++|.+ +++|+||||..++-
T Consensus 284 ~~~a~~~~~al--------g~~G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 284 RAASERLGSLL--------KYKCAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp HHHHHHHHHHT--------TCEEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred HHHHHHHHHHc--------CCcceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 66666665554 234678999999985 89999999999864
No 67
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=97.52 E-value=7.8e-05 Score=76.74 Aligned_cols=135 Identities=22% Similarity=0.256 Sum_probs=81.5
Q ss_pred eEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeec-chhHHHHHHHHhcCCCceEEEcCCCCCCCC
Q psy16684 63 KIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEI-PSETALFLQEARRDSHNMWIVKPSGGSQGR 141 (429)
Q Consensus 63 ~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~L-p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~ 141 (429)
.+|.+ ++..+-.|..++ -|-.+.+.+-.+ ..+-+.+|.++.- |++...+++... .|++||+.++.|.
T Consensus 309 i~Na~-gsgv~~dKal~a-~Lp~l~~~~lgE-----e~il~~VpT~~c~~~~~~~~vl~~l~-----~lViKp~~g~gg~ 376 (474)
T 3n6x_A 309 LANAV-GTGVADDKDTYI-YVPEMIRFYLGE-----EPILSNVPTYQLSKADDLKYVLDNLA-----ELVVKEVQGSGGY 376 (474)
T ss_dssp EESCT-TTHHHHSTTTGG-GHHHHHHHHHCS-----CCSSEECCCEETTSHHHHHHHHHSGG-----GEEEEECCCE---
T ss_pred EeCCC-chhhhcCcHHHH-HhHHHHHHhCCH-----hhhccCCCceecCCHHHHHHHHhchh-----heEEEecCCCCCC
Confidence 46765 445666776443 344444444322 1234556644433 455665665544 8999999999999
Q ss_pred CEEEecCc--hHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccC---ccccC----CceeeeEEEEEEeeecC
Q psy16684 142 GILLFKKL--SEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN---PYLLE----GRKFDMRMYVLVTSFSP 212 (429)
Q Consensus 142 GI~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~---PlLi~----GrKFDlRvyvLvts~~P 212 (429)
|+.+-... ++..++.+.. ......||+|++|+. |.+.+ .+++|+|+|++..
T Consensus 377 gv~iG~~~s~~e~~~~~~~i----------------~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g---- 436 (474)
T 3n6x_A 377 GMLVGPAASKQELEDFRQRI----------------LANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSG---- 436 (474)
T ss_dssp --EEGGGCCHHHHHHHHHHH----------------HHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEES----
T ss_pred ceEECCcCCHHHHHHHHHHH----------------HhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcC----
Confidence 99885543 3444433211 123456999999984 23334 4799999999874
Q ss_pred CeEEEEcceEEEEcCcC
Q psy16684 213 LTVWIARDGFARIAGIK 229 (429)
Q Consensus 213 l~~y~y~~g~~R~a~~~ 229 (429)
-+.++..+|++|+|..+
T Consensus 437 ~~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 437 KTVSLVPGALCRVALRE 453 (474)
T ss_dssp SSEEECSCCEEEEECST
T ss_pred CceEEecceEEEEecCC
Confidence 35889999999999864
No 68
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.52 E-value=0.0004 Score=68.72 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=28.8
Q ss_pred CceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeeccc
Q psy16684 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYIT 189 (429)
Q Consensus 127 ~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~ 189 (429)
+-.+|+||..++.|+|+.++++.+++.. ....+++|+||+
T Consensus 125 g~P~vvKp~~g~g~~gv~~v~~~~~~~~-----------------------~~~~~~~ee~i~ 164 (363)
T 4ffl_A 125 KPPYFVKPPCESSSVGARIIYDDKDLEG-----------------------LEPDTLVEEYVE 164 (363)
T ss_dssp SSCEEEECSSCCTTTTCEEEC------C-----------------------CCTTCEEEECCC
T ss_pred CCCEEEEECCCCCCcCeEEeccHHHhhh-----------------------hccchhhhhhcc
Confidence 4579999999999999999998776531 345689999996
No 69
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.37 E-value=0.00038 Score=68.34 Aligned_cols=49 Identities=4% Similarity=0.029 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEEEeecCCCC
Q psy16684 281 LFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333 (429)
Q Consensus 281 l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLLEVN~~Psl 333 (429)
+.+++.+++.+.+.++.+... +.....+++| +++++++|++|||..|.=
T Consensus 223 ~~~~a~~~a~~i~~~L~~l~~--~g~~G~~~vE--~~~dg~~~v~EIapR~~G 271 (320)
T 2pbz_A 223 LLPQLYDYGLAFVRTMRELEP--PGVIGPFALH--FAYDGSFKAIGIASRIDG 271 (320)
T ss_dssp GHHHHHHHHHHHHHHHHHHST--TCCCSEEEEE--EECSSSCEEEEEESSBCS
T ss_pred HHHHHHHHHHHHHHHHHhhcc--CCceeeEEEE--EcCCCcEEEEEecCCCCC
Confidence 345566666666665543221 1357788889 688899999999998654
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0019 Score=51.94 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=46.9
Q ss_pred cccee--ec--chhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCcc
Q psy16684 105 MPMTF--EI--PSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPE 180 (429)
Q Consensus 105 ~P~T~--~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (429)
.|+++ .+ +++...+.+.. +-.+|+||..++.|+|+.++++.+++....+...... .......
T Consensus 23 ~p~~~~~~~~~~~~~~~~~~~~----~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~----------~~~~~~~ 88 (108)
T 2cqy_A 23 TIPGFDGVVKDAEEAVRIAREI----GYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEA----------ASSFGDD 88 (108)
T ss_dssp CCSCCCSCBSSHHHHHHHHHHH----CSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHH----------HHHTSSC
T ss_pred CCCCcccccCCHHHHHHHHHhc----CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHH----------HhhcCCC
Confidence 35665 33 35555555554 2379999999999999999999988877654210000 0001135
Q ss_pred ceeeeecccC
Q psy16684 181 VYVAQKYITN 190 (429)
Q Consensus 181 ~~IvQkYI~~ 190 (429)
.++||+||+-
T Consensus 89 ~~lvee~i~g 98 (108)
T 2cqy_A 89 RLLIEKFIDN 98 (108)
T ss_dssp CEEEEECCSS
T ss_pred cEEEeeccCC
Confidence 7999999985
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=92.90 E-value=0.13 Score=54.73 Aligned_cols=90 Identities=16% Similarity=0.064 Sum_probs=52.8
Q ss_pred eEeeccCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCcccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCC
Q psy16684 63 KIAHYRNFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRG 142 (429)
Q Consensus 63 ~vNhfp~~~~LtrK~~L~k~lk~~~k~~~~~~~~~~~~~~~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~G 142 (429)
.+|-.-. ..+.+|..|.-....+ + ...++|+|+.-++.. + ... -||+||..|..|.|
T Consensus 486 iieP~~~-~llsNKailalLw~l~----p---------~hp~LLpT~f~~~~~---l-~~~-----~yV~KPi~gReG~n 542 (619)
T 2io8_A 486 VFEPLWT-VIPGNKAILPILWSLF----P---------HHRYLLDTDFTVNDE---L-VKT-----GYAVKPIAGRCGSN 542 (619)
T ss_dssp EESCGGG-GTTTSTTHHHHHHHHS----T---------TCTTCCCEESSCCHH---H-HHH-----CEEEEETTCCTTTT
T ss_pred EECHHHH-HHhhhHHHHHHHHHhC----C---------CCCCCCCeeecCCcc---c-ccC-----CEEEccCCCCCCCC
Confidence 3444433 3478888776544331 1 134677777443321 1 122 59999999999999
Q ss_pred EEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCcc
Q psy16684 143 ILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPY 192 (429)
Q Consensus 143 I~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~Pl 192 (429)
|.+++.-.+. .... ......+.+|.|+|++.|-
T Consensus 543 V~i~~~~~~~---~~~~--------------~~~y~~~~~IyQe~~~lp~ 575 (619)
T 2io8_A 543 IDLVSHHEEV---LDKT--------------SGKFAEQKNIYQQLWCLPK 575 (619)
T ss_dssp CEEECTTSCE---EEEC--------------CCTTTTSCEEEEECCCCCE
T ss_pred EEEEeCCChh---Hhhc--------------cccccCCCeEEEEecCCCC
Confidence 9999752111 0000 0022357899999999873
No 72
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=86.60 E-value=0.39 Score=51.26 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=25.7
Q ss_pred CcccceeecchhHHHHHHHHhcCCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccce
Q psy16684 103 NAMPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVY 182 (429)
Q Consensus 103 ~f~P~T~~Lp~e~~~f~~~~~~~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
.++++|+.-+... ... ..||+||..|..|.||.+++.-.++..-.. .....+.+
T Consensus 527 p~LLpt~f~~~~~---~~~------~~yV~KPi~gReG~nV~I~~~~~~~~~~~~-----------------g~y~~~~~ 580 (652)
T 2vob_A 527 PAILKAEYELTDE---LRK------HGYAKKPIVGRVGSNVIITSGDGVVHAESG-----------------GKYGKRNM 580 (652)
T ss_dssp TTBCCEESSCCHH---HHH------HCEEEEECC--------------------------------------------CE
T ss_pred CCCCchhhcCCCc---ccc------CCeEeccCCCCCCCCEEEEcCCchhhhhcc-----------------cccCCCCe
Confidence 4677777444321 111 159999999999999999865332211000 02345789
Q ss_pred eeeecccCccccCC
Q psy16684 183 VAQKYITNPYLLEG 196 (429)
Q Consensus 183 IvQkYI~~PlLi~G 196 (429)
|+|+|++.|- ++|
T Consensus 581 IyQe~~~lp~-f~~ 593 (652)
T 2vob_A 581 IYQQLFELKK-QDD 593 (652)
T ss_dssp EEEECCC--C-BTT
T ss_pred EEEecccCCc-cCC
Confidence 9999999773 444
No 73
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=85.26 E-value=0.59 Score=43.07 Aligned_cols=75 Identities=13% Similarity=0.057 Sum_probs=44.9
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCC-----CCCCCEEE-ecCchHHHHHhhccCCCcccccCCCCCCCcc
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGG-----SQGRGILL-FKKLSEFEEWRENKDWSPKERKRSDDPNDIE 176 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~-----s~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (429)
.|+++.+ +++...+.++. +..+++||..+ +.|.|+.+ +++.+++....+......... . ..
T Consensus 36 ~p~~~~~~~~~ea~~~a~~l----g~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~------~-~~ 104 (238)
T 1wr2_A 36 VPEEKLAKTLDEALEYAKEI----GYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKY------R-PD 104 (238)
T ss_dssp CCCCEEESSHHHHHHHHHHH----CSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHH------C-TT
T ss_pred CCCeEEeCCHHHHHHHHHHh----CCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhh------C-CC
Confidence 4666655 34555555544 23689999988 67888988 799888876654321000000 0 00
Q ss_pred cCccceeeeecccC
Q psy16684 177 LIPEVYVAQKYITN 190 (429)
Q Consensus 177 ~~~~~~IvQkYI~~ 190 (429)
.....++||+||+.
T Consensus 105 ~~~~~vlVEe~i~~ 118 (238)
T 1wr2_A 105 AEILGVLVAPMLKP 118 (238)
T ss_dssp CCCCEEEEEECCCC
T ss_pred CccceEEEEECCCC
Confidence 11357999999983
No 74
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=69.81 E-value=10 Score=37.70 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCCCEEEecCchHHHHHhhccCCCcccccCCCCCCCcccCccceeeeecccCccccCCceeeeEEE
Q psy16684 125 DSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMY 204 (429)
Q Consensus 125 ~~~~~wI~KP~~~s~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvQkYI~~PlLi~GrKFDlRvy 204 (429)
+..-..|+|..+|.-|-||.-+++.+|+..+-+.... +.. ..++ +......|||+.|..--.++|-.-.-=+|
T Consensus 275 ~~~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~Rn---KM~---~~Ke-g~~v~~VIIQEGV~T~E~~~~avAEPVVY 347 (432)
T 3k1t_A 275 KQEPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRN---KMS---VVKE-GLKVSEVILQEGVYTFEHLKDAVAEPVIY 347 (432)
T ss_dssp CSCCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHH---HHH---CSSS-SSCCCEEEEEECCCCCEEETTEEEEEEEE
T ss_pred CCCceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhh---hhh---hccC-CCccceEEEecCcchhhhhCCccccceEE
Confidence 3445789999999999999999999998643221100 000 1112 45667899999998644556543333333
Q ss_pred EEEeeecCCeEEEEcceEEEEcCcCCCCCCccCccccccccccc
Q psy16684 205 VLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQ 248 (429)
Q Consensus 205 vLvts~~Pl~~y~y~~g~~R~a~~~y~~~~~~~~~~HLTN~siq 248 (429)
+.-. | .-+||.|+-+.+-.-+|++..-+|..=.+..
T Consensus 348 mid~-------~-vvGgFyRvh~~rg~dENLNapGm~F~plaf~ 383 (432)
T 3k1t_A 348 MMDH-------F-VVGGFYRVHTSRGADENLNAPGMHFEPLTFE 383 (432)
T ss_dssp EETT-------E-EEEEEEEEESCCSTTTTTSCCTTCEEEEECC
T ss_pred EECC-------E-EEEEEEEecCCCCCccCCCCCCCEeeecccc
Confidence 2211 1 2368999999988788998888997655543
No 75
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=68.88 E-value=11 Score=37.50 Aligned_cols=78 Identities=10% Similarity=0.073 Sum_probs=45.0
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCC--CCCCCCC---------EEEecCchHHHHHhhccCCCcccccCCCC
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPS--GGSQGRG---------ILLFKKLSEFEEWRENKDWSPKERKRSDD 171 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~--~~s~G~G---------I~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (429)
.|++... ++|.....++.. ...+++||. .|.+|+| +.+.++.+++.++.+........ ..
T Consensus 19 vp~~~~~~s~~ea~~~a~~lg---~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~----t~ 91 (395)
T 2fp4_B 19 VQRFFVADTANEALEAAKRLN---AKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLA----TK 91 (395)
T ss_dssp CCCEEEESSHHHHHHHHHHHT---CSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEE----CT
T ss_pred CCCeEEECCHHHHHHHHHHcC---CCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchh----hh
Confidence 3444444 466666666653 114799994 5667766 99999999998887643211000 00
Q ss_pred CCC-cccCccceeeeeccc
Q psy16684 172 PND-IELIPEVYVAQKYIT 189 (429)
Q Consensus 172 ~~~-~~~~~~~~IvQkYI~ 189 (429)
|.. .......++||+|++
T Consensus 92 q~g~~g~~~~~vlVEe~v~ 110 (395)
T 2fp4_B 92 QTPKEGVKVNKVMVAEALD 110 (395)
T ss_dssp TSCTTCEECCCEEEEECCC
T ss_pred ccCCCCCccceEEEEEccC
Confidence 000 011134689999997
No 76
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=53.08 E-value=20 Score=35.62 Aligned_cols=71 Identities=17% Similarity=0.088 Sum_probs=45.2
Q ss_pred ccceeec--chhHHHHHHHHhcCCCceEEEcCCCCCCCC----CEEEecCchHHHHHhhccCCCcccccCCCCCCCcccC
Q psy16684 105 MPMTFEI--PSETALFLQEARRDSHNMWIVKPSGGSQGR----GILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELI 178 (429)
Q Consensus 105 ~P~T~~L--p~e~~~f~~~~~~~~~~~wI~KP~~~s~G~----GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (429)
+|++... ++|.....++.. ..+++||.....|+ |+.+.++.+++.+..+....... . ...
T Consensus 19 vp~~~~~~s~eea~~aa~~lG----~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~---------~-g~~ 84 (397)
T 3ufx_B 19 VPPGKVAYTPEEAKRIAEEFG----KRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNI---------K-GLT 84 (397)
T ss_dssp CCCEEEESSHHHHHHHHHHHT----SCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEE---------T-TEE
T ss_pred CCCeEEECCHHHHHHHHHHcC----CCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhc---------c-CCc
Confidence 4566555 466766666653 37999998743343 99999999998877654311000 0 112
Q ss_pred ccceeeeeccc
Q psy16684 179 PEVYVAQKYIT 189 (429)
Q Consensus 179 ~~~~IvQkYI~ 189 (429)
...++||+|++
T Consensus 85 ~~~vlVEe~v~ 95 (397)
T 3ufx_B 85 VKKVLVAEAVD 95 (397)
T ss_dssp CCCEEEEECCC
T ss_pred cceEEEEEeec
Confidence 35788999986
No 77
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=45.56 E-value=29 Score=34.32 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=43.3
Q ss_pred cceeec--chhHHHHHHHHhcCCCce-EEEcCCCCC--CC--CCEEEecCchHHHHHhhccCCCcccccCCCCCCC-ccc
Q psy16684 106 PMTFEI--PSETALFLQEARRDSHNM-WIVKPSGGS--QG--RGILLFKKLSEFEEWRENKDWSPKERKRSDDPND-IEL 177 (429)
Q Consensus 106 P~T~~L--p~e~~~f~~~~~~~~~~~-wI~KP~~~s--~G--~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 177 (429)
|+.... ++|.....++.. .. +++||.... +| .|+.+.++.+++.++.+....... ...|.. ...
T Consensus 20 p~~~~~~s~eea~~aa~~lG----~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~----~t~q~g~~g~ 91 (388)
T 2nu8_B 20 PVGYACTTPREAEEAASKIG----AGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRL----VTYQTDANGQ 91 (388)
T ss_dssp CCEEEESSHHHHHHHHHHHC----SSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEE----CCTTSCTTCE
T ss_pred CCeeEECCHHHHHHHHHHhC----CCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhh----hccccCCCCc
Confidence 554444 456655555542 24 799998753 33 399999999998877654311000 000000 011
Q ss_pred Cccceeeeeccc
Q psy16684 178 IPEVYVAQKYIT 189 (429)
Q Consensus 178 ~~~~~IvQkYI~ 189 (429)
....++||+|++
T Consensus 92 ~~~~vlVEe~v~ 103 (388)
T 2nu8_B 92 PVNQILVEAATD 103 (388)
T ss_dssp ECCCEEEEECCC
T ss_pred ccceEEEEEccc
Confidence 235789999997
No 78
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=42.69 E-value=17 Score=37.03 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.5
Q ss_pred ceEEEEEEEEecCCccEEEEEeec-CCCC
Q psy16684 306 CFELFGFDILLQDNLNVCLLEANA-APSM 333 (429)
Q Consensus 306 ~Fel~G~D~liD~~~kpWLLEVN~-~Psl 333 (429)
...++|+|+..|.+|+.|+||-|+ .||-
T Consensus 141 ~~~i~~~Dl~r~~dG~~~vlEdn~~~PSG 169 (474)
T 3n6x_A 141 YAHIAGVDLVRTGENDFYVLEDNLRTPSG 169 (474)
T ss_dssp SCSEEEEEEEECSSSCEEEEEEECSSCCC
T ss_pred EEEEEEEEEEECCCCCEEEEEeCCCCCch
Confidence 356899999999999999999999 4774
No 79
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=36.77 E-value=4.7 Score=34.26 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=11.4
Q ss_pred CccEEEEEeecCCCCCCCC
Q psy16684 319 NLNVCLLEANAAPSMKATD 337 (429)
Q Consensus 319 ~~kpWLLEVN~~Psl~~~~ 337 (429)
+++|||-||+.+||-...+
T Consensus 105 dl~pwl~ei~~~p~~~~~~ 123 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLTQS 123 (144)
T ss_dssp GGHHHHHHTTCC-------
T ss_pred chhHHHHHhCCCcHHHhcc
Confidence 6899999999999976543
No 80
>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; structural genomics, saicar synthetase, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: d.143.1.1
Probab=25.72 E-value=1.3e+02 Score=27.36 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcceEEEEEEEEecCCccEEEE-EeecCCCCC
Q psy16684 280 ELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLL-EANAAPSMK 334 (429)
Q Consensus 280 ~l~~~I~~ii~~~l~s~~~~~~~~~~~Fel~G~D~liD~~~kpWLL-EVN~~Psl~ 334 (429)
..+++|+++..+....+...+....--.--+-+-|+.|.+|++.|+ || +|+-.
T Consensus 139 ee~~~i~~~al~i~~~l~~~~~~~Gi~LvD~K~EFG~~~~G~ivL~DEI--tPDs~ 192 (230)
T 1kut_A 139 KQAEKMKEAAVKITLALKEFFERANFELWDIKYEFGLDKDGNVVLGDEI--SPDTF 192 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECEEECTTCCEEECSCC--STTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEcCCCCEEEEEee--cCCcc
Confidence 3456677777777766666655444445666777788889999988 77 77654
Done!