RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16684
         (429 letters)



>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
           3tii_A* 3tin_A*
          Length = 380

 Score =  272 bits (697), Expect = 2e-88
 Identities = 86/396 (21%), Positives = 153/396 (38%), Gaps = 59/396 (14%)

Query: 13  GQTNNTV---IEDVLRGRPGWMPVGSDDTNWDIFWCDLATTKL-ILESSMKNHQKIAHYR 68
              N+TV   +  +L     W  +  D+  +++   +        L       Q + +YR
Sbjct: 10  RDENSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYR 69

Query: 69  NFYEISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSET------------- 115
              ++ RK  L + +K           T   E     P   + P+               
Sbjct: 70  GADKLCRKASLVKLIKTSPELTETC--TWFPESYVIYPTNEKTPAMRARNGLPDLANAPR 127

Query: 116 --------ALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERK 167
                   + F ++   +  N+WI K S G++G GIL+    +E  ++ +N+        
Sbjct: 128 TDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQG------- 180

Query: 168 RSDDPNDIELIPEVYVAQKYITNPYLLE--GRKFDMRMYVLVTSFSPLTVWIARDGFARI 225
                       +V+V QKY+ +P LLE   RKFD+R +VLV +     +++ R+G  R 
Sbjct: 181 ------------QVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRT 226

Query: 226 AGIKYCKDNFADNCMHLTNTAIQLSGENLSQ----GRKWDIQNLRLFLTAMHGREIVDEL 281
           +   Y   NF D   HLTN  IQ            G +   +    +L       + + +
Sbjct: 227 SSEPYSDTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTSLNINLENSI 286

Query: 282 FQKIAKVVITALKSVECIMMGNK---HCFELFGFDILLQDNLNVCLLEANAAPSMKATDD 338
             +I +++   L  +E  +       H F+LFGFD ++  NL V L+E N AP+      
Sbjct: 287 LCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPACAQK-- 344

Query: 339 HDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKI 374
              +L   ++  A++ +    +   K      F K+
Sbjct: 345 LYAELCKGIVDLAISSVFPLNEENHKPTEDNVFIKL 380


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 57/491 (11%), Positives = 120/491 (24%), Gaps = 174/491 (35%)

Query: 42  IFWCDLATTKLILESSMKNHQKIAHYRNFYEISRKNY--LARNLKRYRRQCVKNGNTEEA 99
           +FW             + + Q+    +   E+ R NY  L   +K  +RQ   +  T   
Sbjct: 67  LFWT------------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMY 112

Query: 100 E-----LSNAMPM--TFEIPSETALF-----LQEARRDS----HNM-------------- 129
                 L N   +   + +            L E R         +              
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 130 -------------WIVKPSGGSQGRGILLFKKLSEF-----EEWRENKDWSPKERKRSDD 171
                        W+   +  +      + + L +        W    D S   + R   
Sbjct: 173 SYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 172 PNDIELIPEVYVAQKY---------ITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDG- 221
                 +  +  ++ Y         + N        F++   +L+T+         R   
Sbjct: 230 IQA--ELRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTT---------RFKQ 276

Query: 222 -FARIAGIKYCKDNFADNCMHLTNTAIQLSGENLSQGRKW---DIQNLRL-------FLT 270
               ++       +   + M LT        E  S   K+     Q+L            
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLT------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 271 AMHGREIVDEL-------------FQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQ 317
           ++    I D L                I +  +  L+  E      +  F+      +  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-----YRKMFDRLS---VFP 382

Query: 318 DNLNV-----CLLEANAAP-------------SMKATDDHDYKLKYNLIQDAL-----NV 354
            + ++      L+  +                S+      +  +    I   L     N 
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 355 IDLEKKLTGKEIRVGGFDKIWCGGPIYQINKGMNAPEFCKKSN---FYNMYLG---CVND 408
             L + +                   Y I K  ++ +         FY+ ++G      +
Sbjct: 443 YALHRSIVDH----------------YNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIE 485

Query: 409 RDEQLEEMTKW 419
             E++      
Sbjct: 486 HPERMTLFRMV 496



 Score = 33.3 bits (75), Expect = 0.19
 Identities = 24/172 (13%), Positives = 52/172 (30%), Gaps = 41/172 (23%)

Query: 261 DIQNLRLFLTAMHGREIVDELFQKIAKVVITALKSVEC---IMMGNKHCFELFGFDILLQ 317
           DI  L +F  A     + +   + +  +  + L   E    IM  +     L  F  LL 
Sbjct: 20  DI--LSVFEDAF----VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 318 DNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCG 377
               +          ++     +YK   + I+       +  ++                
Sbjct: 74  KQEEM------VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY--------------- 112

Query: 378 GPIYQINKGMNAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMNILKKETVI 429
             I Q ++  N  +   K N        V+ R +   ++ + +  L+    +
Sbjct: 113 --IEQRDRLYNDNQVFAKYN--------VS-RLQPYLKLRQALLELRPAKNV 153


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 64/390 (16%), Positives = 114/390 (29%), Gaps = 141/390 (36%)

Query: 72  EISRKNYLARNLKRYRRQCVKNGNTEEAELSNAMPMTFEIPSETALFLQEARRDSHNMWI 131
            + +   L +N   Y    +                 F+  S +ALF +     +  +  
Sbjct: 115 TLVKTKELIKN---YITARI------------MAKRPFDKKSNSALF-RAVGEGNAQLVA 158

Query: 132 VKPSGGSQGRGILLFKKLSE-FEEWREN-KDW----SPKERKRSDDPNDIE-LIPEVYVA 184
           +   GG QG     F++L + ++ +     D     +    +      D E +  +    
Sbjct: 159 I--FGG-QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215

Query: 185 QKYITNP-------YLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFAD 237
            +++ NP       YLL          + + S  PL   I   G  ++A       ++  
Sbjct: 216 LEWLENPSNTPDKDYLL---------SIPI-SC-PL---I---GVIQLA-------HYVV 251

Query: 238 NCMHLTNTAIQLSGENLSQGRKWDIQNLRLFLTAM--HGREIV----------DELFQKI 285
                     +L G        +    LR +L     H + +V           E F   
Sbjct: 252 TA--------KLLG--------FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295

Query: 286 AKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPS-MKATDDHDYKLK 344
            +  IT L       +G   C+E +    L    L   L      PS M           
Sbjct: 296 VRKAITVL-----FFIG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPM----------- 338

Query: 345 YNLIQDALNVIDLEKKLTGKEIR----------------VGGFDKIWCGGP---IYQIN- 384
                  L++ +L ++     +                 V G   +   GP   +Y +N 
Sbjct: 339 -------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391

Query: 385 --KGMNAP--------EFCK-KSNFYNMYL 403
             +   AP         F + K  F N +L
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421



 Score = 33.9 bits (77), Expect = 0.14
 Identities = 47/347 (13%), Positives = 103/347 (29%), Gaps = 114/347 (32%)

Query: 64  IAHYRNFYEISRKNYLARNLKRYRR---QCVKN---------GNTEEAELSN---AMPMT 108
           +AHY    ++         L+ Y +      +           ++ E+   +   A+ + 
Sbjct: 246 LAHYVVTAKLLGFTP--GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303

Query: 109 FEI--------P--SETALFLQEARRDSHN----MWIVKPSGGSQGRGILLFKKLSEFEE 154
           F I        P  S     L+++  ++      M  +     +Q +   +   +++   
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS--NLTQEQ---VQDYVNKT-- 356

Query: 155 WRENKDWSPKERKRSDDPNDIELI--PEVYVAQKYIT-NPYLLEG-----RK-------- 198
              N    P  ++       I L+   +  V    ++  P  L G     RK        
Sbjct: 357 ---NSH-LPAGKQVE-----ISLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSGLD 403

Query: 199 -----FDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTNTAIQLSGEN 253
                F  R       F P+                     F  +   L   +  ++ + 
Sbjct: 404 QSRIPFSERKLKFSNRFLPVAS------------------PF--HSHLLVPASDLINKDL 443

Query: 254 LSQGRKWDIQNLRL--FLTAMHG---REIVDELFQKIAKVVITALKSV---ECIMMGNKH 305
           +     ++ +++++  + T   G   R +   + ++I   +I     V           H
Sbjct: 444 VKNNVSFNAKDIQIPVYDTF-DGSDLRVLSGSISERIVDCIIR--LPVKWETTTQFKATH 500

Query: 306 --CF---ELFGFDILLQDNLN---VCLLEANAAPSMKATDDHDYKLK 344
              F      G  +L   N +   V ++ A    ++    D DY  K
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAG---TLDINPDDDYGFK 544


>3n6x_A Putative glutathionylspermidine synthase; domain of unknown
           function (DUF404), structural genomics; 2.35A
           {Methylobacillus flagellatus}
          Length = 474

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 25/104 (24%)

Query: 130 WIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYI- 188
            +VK   GS G G+L+    S+    +E +D+  +              P  Y+AQ  + 
Sbjct: 365 LVVKEVQGSGGYGMLVGPAASK----QELEDFRQRILAN----------PANYIAQPTLA 410

Query: 189 --TNPYL----LEGRKFDMRMYVLVTSFSPLTVWIARDGFARIA 226
             T P L    +  R  D+R +VL    S  TV +      R+A
Sbjct: 411 LSTCPTLVETGIAPRHVDLRPFVL----SGKTVSLVPGALCRVA 450


>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A
           {Mycobacterium tuberculosis}
          Length = 119

 Score = 32.9 bits (75), Expect = 0.054
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 28/97 (28%)

Query: 274 GREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333
               VD + Q  A  V ++L+                   ++L ++L  C   A      
Sbjct: 33  DAYCVDVMKQISA--VQSSLERAN---------------RVMLHNHLETCFSTAVLDGHG 75

Query: 334 KATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGG 370
           +A            I++ ++ +     LTG   R+GG
Sbjct: 76  QAA-----------IEELIDAVKFTPALTGPHARLGG 101


>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II,
           nysgrc., structural genomics, protein structure
           initiative; 1.87A {Archaeoglobus fulgidus}
          Length = 305

 Score = 33.1 bits (75), Expect = 0.16
 Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 130 WIVKPSGGSQGRGILLFKKLSE---FEEWRENKDWS 162
           +I+KP     G GI    ++ +    +E+ E  + S
Sbjct: 136 FIIKPRTACAGEGIGFSDEVPDGHIAQEFIEGINLS 171


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.25
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)

Query: 316 LQDNLNVCLLEANAAPSM--KAT 336
           LQ +L   L   ++AP++  KAT
Sbjct: 25  LQASLK--LYADDSAPALAIKAT 45


>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
           cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
           2.95A {Streptococcus agalactiae serogroup V}
          Length = 750

 Score = 32.6 bits (74), Expect = 0.26
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 131 IVKPSGGSQGRGILLFKKLSEFEEWRE 157
           +VKP   + G GI +FK  +    + +
Sbjct: 524 VVKPKSTNFGLGISIFKTSANLASYEK 550


>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
           domain, mRNA turnover, RRN processing, RNA binding, DNA
           binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
          Length = 1155

 Score = 31.1 bits (69), Expect = 0.97
 Identities = 18/163 (11%), Positives = 49/163 (30%), Gaps = 5/163 (3%)

Query: 127 HNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQK 186
            N         +    + L      F   RE   +  +             +  + + ++
Sbjct: 196 PNTRHCIYGLDADLIILGLSTHDHHFCLLREEVTFGKRSSSVKTLETQNFFLLHLSILRE 255

Query: 187 YITN--PYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGIKYCKDNFADNCMHLTN 244
           Y+      + +  +F+     ++  F  +   I  D    +  + + K       +    
Sbjct: 256 YLALEFEEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDL-HLKKGAFPVLLQTFK 314

Query: 245 TAIQLSGENLSQGRKWDIQNLRLFLTAMHGREIVDELFQKIAK 287
            A+Q     +++  K ++    ++L  +   E     F+K   
Sbjct: 315 EALQHMDGYINEQGKINLARFSIWLKYLSDFE--YLNFEKKDI 355


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.4 bits (65), Expect = 1.8
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 153 EEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITNPYL-----LEGRKFDMR 202
            +WRE +    +E   +    + E   +   A+K +          +E  K + R
Sbjct: 88  RKWREEQRKRLQELDAASKVMEQEWREK---AKKDLEEWNQRQSEQVEKNKINNR 139


>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
           ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
           subtilis}
          Length = 474

 Score = 29.9 bits (67), Expect = 1.9
 Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)

Query: 130 WIVKPSGGSQGRGILLFKKLSEFEE-WRENKDWSPKERKRSDDPNDIELIPEVYVAQKYI 188
            I+KP+  +   G+ L       E+ +    D+            +       ++A++++
Sbjct: 177 LILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAP-----FIAEEFL 231

Query: 189 TNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIAGI--KYCKDNFADNCMH 241
              Y    +      Y+ +            DG      I  K  +  F +    
Sbjct: 232 QGEYGDWYQTEGYSDYISIEGIM-------ADGEYFPIAIHDKTPQIGFTETSHI 279


>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
           structural genomics, PSI-2, protein structure
           initiative; 2.30A {Pyrococcus furiosus}
          Length = 142

 Score = 28.0 bits (63), Expect = 3.7
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 11/75 (14%)

Query: 309 LFGF----DILLQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGK 364
                    ++L++ L   +      P     +               NV    K+   +
Sbjct: 49  TLHVTFEPMVILKEELEKAVTRHIVEPVPLNPNQDFLANM-------KNVSQRLKEKVRE 101

Query: 365 EIRVGGFDKIWCGGP 379
            +    +D ++  GP
Sbjct: 102 LLESEDWDLVFMVGP 116


>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
           domain, carbamoylphosphate synthase subunit (split gene
           in MJ); 2.00A {Exiguobacterium sibiricum}
          Length = 331

 Score = 27.9 bits (62), Expect = 6.0
 Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 2/56 (3%)

Query: 105 MPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKD 160
              T+   +        A  +      VKP  GS    +   + + E E+      
Sbjct: 129 HARTYATMASFEEA--LAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNT 182


>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; 2.00A {Thermus thermophilus} SCOP:
           c.30.1.6 d.142.1.7 PDB: 1uc9_A*
          Length = 280

 Score = 27.8 bits (62), Expect = 6.4
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 20/102 (19%)

Query: 105 MPMTFEIPSETALFLQEARRDSHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPK 164
            P T                      ++KP  GS GR +               K+    
Sbjct: 103 QPKTALATDREEA--LRLMEAFGYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGG 160

Query: 165 ERKRSDDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMYVL 206
            + +            ++  Q+Y+      E    D+R++V+
Sbjct: 161 FQHQ------------LFYIQEYV------EKPGRDIRVFVV 184


>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
           vesicle T structural genomics, structural genomics
           consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
           sapiens}
          Length = 344

 Score = 27.8 bits (61), Expect = 6.6
 Identities = 5/31 (16%), Positives = 11/31 (35%)

Query: 131 IVKPSGGSQGRGILLFKKLSEFEEWRENKDW 161
           +VK      G G +  +   +F++       
Sbjct: 173 VVKLGHAHAGMGKIKVENQLDFQDITSVVAM 203


>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
           PSI-biology, midwest center for structu genomics, MCSG,
           ligase; 2.61A {Anaerococcus prevotii}
          Length = 403

 Score = 27.7 bits (62), Expect = 7.6
 Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 131 IVKPSGGSQGRGILLFKKLSEFEE-WRENKDWSPKER 166
           IVK +     +GI + KK  E  + + E  + + ++ 
Sbjct: 148 IVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDY 184


>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl
           methyltransferase-like protein; sabath family,
           indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A
           {Arabidopsis thaliana}
          Length = 374

 Score = 27.4 bits (60), Expect = 9.6
 Identities = 6/24 (25%), Positives = 12/24 (50%)

Query: 274 GREIVDELFQKIAKVVITALKSVE 297
           G E+ ++LF ++     +  K V 
Sbjct: 336 GEELSNKLFSRVESRATSHAKDVL 359


>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
           gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
           HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
          Length = 757

 Score = 27.6 bits (61), Expect = 9.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 131 IVKPSGGSQGRGILLFK 147
           ++KP   + G GI +F+
Sbjct: 529 VIKPKSTNYGLGITIFQ 545


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,742,302
Number of extensions: 407179
Number of successful extensions: 897
Number of sequences better than 10.0: 1
Number of HSP's gapped: 890
Number of HSP's successfully gapped: 26
Length of query: 429
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 333
Effective length of database: 4,021,377
Effective search space: 1339118541
Effective search space used: 1339118541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)