RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16684
(429 letters)
>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Methanocaldococcus
jannaschii [TaxId: 2190]}
Length = 238
Score = 30.9 bits (69), Expect = 0.24
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 131 IVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYVAQKYITN 190
IVK G GRG + EF + E+ K +D+ E YV
Sbjct: 31 IVKFPGARGGRGYFIASSTEEFYKKAED---LKKRGILTDEDIA-NAHIEEYVVGTNFCI 86
Query: 191 PYLLEGRKFDMRMYVL 206
Y K ++ + +
Sbjct: 87 HYFYSPLKDEVELLGM 102
>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Pyrococcus furiosus
[TaxId: 2261]}
Length = 235
Score = 28.3 bits (62), Expect = 1.4
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 131 IVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPEVYV 183
IVKP G G+G L K +F E ++ + ++
Sbjct: 31 IVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVY 83
>d2btva_ e.28.1.1 (A:) BTV vp3 {Bluetongue virus, strain 1 [TaxId:
40051]}
Length = 845
Score = 28.3 bits (63), Expect = 2.0
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 170 DDPNDIELIPEVYVAQKYITNPYLLEGRKFDMRMY 204
+D D+ L +VY+ + + P L + +F +
Sbjct: 636 NDFEDLMLTDQVYMHRDMLPEPRLDDIERFRQEGF 670
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 28.0 bits (62), Expect = 2.1
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 111 IPSETALFLQEARRDSHNMW---IVKPSGGSQGRGILLFKKLSEFEE-WRENKDWSP 163
S A ++EA + ++ I++PS G G + EFEE D SP
Sbjct: 17 ARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSP 73
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 27.9 bits (61), Expect = 2.9
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 265 LRLFLTAMHGREIVDELFQKIAKV 288
+R ++A H E + + ++
Sbjct: 370 IRTQMSAAHTPEQITRAVEAFTRI 393
>d1a6ca1 b.121.4.2 (A:1-176) Nepovirus capsid protein {TRSV (Tobacco
ringspot virus) [TaxId: 12282]}
Length = 176
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 183 VAQKYITNPYLLEGRKFDMRMYVLVTSFSPLTVWIARDGFARIA 226
+Q++ + F +RM+ +F+ L++ D + RI
Sbjct: 44 HSQEWCAKGIVN--PTFTVRMHAPRNAFAGLSIACTFDDYKRID 85
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 26.9 bits (59), Expect = 5.5
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 141 RGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIP 179
R K + F+E K+ + + + D + +E P
Sbjct: 394 RKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYP 432
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 26.8 bits (58), Expect = 6.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 265 LRLFLTAMHGREIVDELFQKIAKV 288
LRL LTA H + +D L + +
Sbjct: 359 LRLTLTAAHEMQDIDRLLEVLHGN 382
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 26.4 bits (58), Expect = 7.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 141 RGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIP 179
R K + FEE K+ + + + D + +EL P
Sbjct: 395 RKRFSLKPYTSFEELTGEKEMAAELKALYSDIDVMELYP 433
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 26.4 bits (57), Expect = 7.9
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 1/90 (1%)
Query: 316 LQDNLNVCLLEANAAPSMKATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIW 375
L + V +LE + P+ YNL Q+ +E+ ++ I +
Sbjct: 45 LSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLG 104
Query: 376 CG-GPIYQINKGMNAPEFCKKSNFYNMYLG 404
+ N + ++M L
Sbjct: 105 GTSIINAGVYARANTSIYSASGVDWDMDLV 134
>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 329
Score = 26.4 bits (56), Expect = 7.9
Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 6/154 (3%)
Query: 274 GREIVDELFQKIAKVVITALKSVECIMMGNKHCFELFGFDILLQDNLNVCLLEANAAPSM 333
G I EL ++ K++ V I M N + I+ +D L S
Sbjct: 17 GWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASF 76
Query: 334 KATDDHDYKLKYNLIQDALNVIDLEKKLTGKEIRVGGFDKIWCGGPIYQINKG------M 387
+D D + K N + L +E + G + + + +
Sbjct: 77 DTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSR 136
Query: 388 NAPEFCKKSNFYNMYLGCVNDRDEQLEEMTKWMN 421
+ Y++ C + + +
Sbjct: 137 KGYLDALSKSSYSLISLCKYFVNIMKPQSSIISL 170
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 26.1 bits (56), Expect = 8.8
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 265 LRLFLTAMHGREIVDELFQKIAKV 288
LR + +H + +D L + +
Sbjct: 372 LRFTPSPVHDLKQIDGLVHAMDLL 395
>d2if6a1 d.3.1.21 (A:19-200) Hypothetical protein YiiX {Escherichia
coli [TaxId: 562]}
Length = 182
Score = 25.8 bits (56), Expect = 8.9
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 126 SHNMWIVKPSGGSQGRGILLFKKLSEFEEWRENKDWSPKERKRSDDPNDIELIPE-VYVA 184
SH +V + + K + ++W + + +R + +E + A
Sbjct: 30 SHTGMLVMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTA 89
Query: 185 QKYITNPYLLEGRKFDMRMY 204
++Y+ PY D R Y
Sbjct: 90 KRYLGKPYDFSFSWSDDRQY 109
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 259
Score = 25.8 bits (56), Expect = 9.1
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 131 IVKPSGGSQGRGILLFKKLSEFEEWREN-----KDWSPKERKRSDDPNDIEL 177
+V+ S GR + + ++ + + D DD ++++
Sbjct: 37 VVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDV 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.418
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,694,873
Number of extensions: 82983
Number of successful extensions: 297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 18
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.2 bits)