BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16685
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP+ C C K FS SS+L H+R H+GEKP++C CGK F+ SS+L H+ TH
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
R EKP+ C C K FS SS L H+R H+GEKP++C CGK F+ S +L H+ TH
Sbjct: 25 RTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
R EKP+ C C K FS S L+ H+R H +K
Sbjct: 53 RTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
R EKP+ C C K FS + L H+R H+GEKP++C CGK F+ NL+ H+ TH
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
R EKP+ C C K FS L H+R H+GEKP++C CGK F+ +NL H+ TH
Sbjct: 42 RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT 101
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
R EKP+ C C K FS +L+TH+R H+GEKP++C CGK F+ L H+ TH
Sbjct: 126 RTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP+ C C K FS S L H+R H+GEKP++C CGK F+ +L H+ TH
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT 73
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
R EKP+ C C K FS ++L H+R H+GEKP+ C CGK F+ ++L H+ TH
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
R EKP+ C C K FS +LN H+R H+G+K
Sbjct: 154 RTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 23 FSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
F +SSS+ + GEKP+ C CGK F+ S +L H+ TH
Sbjct: 4 FGSSSSV-AQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT 45
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S+ L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S+ L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 59.3 bits (142), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS SS+L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
+P+ C C K F S + H IH+GEKPH+CQVCGK F+ SSNL H H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
C +C K F SS+L+TH IHS +P+ CQ CGKRF S++ H H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT 53
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 7 VLISEKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
+ EKPH C VC K FS SS+L TH R H+G
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S SL H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS +SLN H R H+GEKP C +CG++F H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS ++L+TH RIH+G+KP QC++C + F+ ++L H TH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH 57
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
R E+P+ C +C K F L HR IHS EKP +CQ CGK F S L H+ H+
Sbjct: 38 RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Query: 66 KVN 68
+ +
Sbjct: 98 QTS 100
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIK 66
++K +C C + F+ S +L H R H+ E+P+ C +C K F +L HR H K
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS SS L H+R+H+GEKP++C CGK F+ +S L H+ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHS 37
RV EKP+ C C K FS +S L H+RIH+
Sbjct: 35 RVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 25 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Query: 65 IK 66
++
Sbjct: 85 LR 86
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 56
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 65 IK 66
++
Sbjct: 86 LR 87
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHR-MTHIK--VN 68
KP C +C + FS S L TH R H+GEKP C +CG++F S HR + HI +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 69 DDFKEILN 76
D +E+L+
Sbjct: 62 DKVEELLS 69
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRI 35
+R EKP C +C + F+ S HR I
Sbjct: 23 IRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R+ +KP C +C + FS + LN H R H+GEKP C +CG++F H H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Query: 65 IKVND 69
++ D
Sbjct: 86 LRQKD 90
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS ++L+TH RIH+G+KP QC++C + F+ + L H TH
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH 57
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
C C K FS SS L+ HRR H+GEKP++C CGK F S+L H H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
R EKP+ C C K F S L H R+H+G P
Sbjct: 39 RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 42 HQCQVCGKRFTASSNLYYHRMTHI 65
++C CGK F+ SS+L HR TH
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHT 42
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 7 VLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
V+ +P+ C V C + FS S L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHS 37
+R+ +KP C +C + FS S L TH R H+
Sbjct: 41 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
HVC+ C K F SS L H+ +H+GEKP QC + CGKRF+ NL H H
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 7 VLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRM 62
V EKP C+ C K FS +L TH RIH+G++P+ C C K+F S+NL H +
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
Query: 63 THIKVNDD 70
TH K ++
Sbjct: 116 THAKAKNN 123
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 19 CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
C+K F +S++ H H G + H C CGK F SS L H++ H
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+KP+ C C F +L +H+ +H+GEKP++C +CG +F +NL H H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 7 VLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
V EKP+ C++C F+ ++L TH RIHSGEKP
Sbjct: 39 VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 6 RVLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMT 63
R EKP+ C C + FS S L H+R H+G KP QC+ C ++F+ S +L H T
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Query: 64 HI 65
H
Sbjct: 89 HT 90
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
KP C C + FS S L TH R H+GEKP C+ C K+F S L H H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTHIK 66
++P +C+ C+K + S L H R H+GEKP+QC C +RF+ S L H+ H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 67 VN 68
V
Sbjct: 64 VK 65
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIKVNDDF 71
+P+ C VC K F L H +IH+G KP++C +C KRF + + H + K +
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKSYEAA 95
Query: 72 KEILNLEPVSG 82
K N SG
Sbjct: 96 KAEQNTTEASG 106
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 19 CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIKVNDDFK 72
C K F+ S + H +H G +P+ C VCGK+F + +H + H+K++ K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF----KMKHHLVGHMKIHTGIK 64
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 1 MIYILRVLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSN 56
++ +RV EKP C C K F+ S +L H+R H+GEKP +C+ C +RF SS+
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 57 LYYHRMTHI 65
H H
Sbjct: 138 RKKHMHVHT 146
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTHI 65
C K F L H R+H+GEKP C CGK F S NL H+ TH
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 32/61 (52%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+R KP+ C C + SSSLN H RIHS E+P +CQ+C SS L H +H
Sbjct: 28 MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Query: 65 I 65
Sbjct: 88 T 88
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
S PH C VC K FS L TH R H+G KP++C+ C SS+L H H
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 41 PHQCQVCGKRFTASSNLYYHRMTHIKV 67
PH+C+VCGK F+ L H H V
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGV 34
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
LR+ E+P C +C SS L H R H+G+
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
C +C K F LN H+ HSGEKP+ C VCG RF + YH +H
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE--KPHQCQVCGKRFTASSNLYYH 60
EKP+ C VC F ++ H R H G KP+ CQ CGK F+ +L H
Sbjct: 32 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 12 KPHVCSVCSKGFSTSSSLNTH-RRIHSG 38
KP++C C KGFS LN H +++HSG
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 5 LRVLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRM 62
LR EKP+ C+ C F+ S L H R H+G KP QC VC + F+ S +L H
Sbjct: 37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Query: 63 TH 64
H
Sbjct: 97 RH 98
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 8 LISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMT 63
L + H C C+K ++ SS L H R H+GEKP++C + C RF S L H
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 64 HI 65
H
Sbjct: 70 HT 71
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SE+P C+ C K + +S L+ HRR H G +P C CGK F S + H H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
E+P C CGK + +S L HR H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHL 28
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIH 36
R + +P C C K F S +N H ++H
Sbjct: 25 RAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 5 LRVLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRM 62
LR EKP+ C C F+ S L H R H+G +P QCQ C + F+ S +L H
Sbjct: 27 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Query: 63 THI 65
H
Sbjct: 87 RHF 89
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 14 HVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTHI 65
H C C K ++ SS L H R H+GEKP+ C CG +F S L H H
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 5 LRVLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRM 62
LR EKP+ C C F+ S L H R H+G +P QCQ C + F+ S +L H
Sbjct: 28 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Query: 63 THI 65
H
Sbjct: 88 RHF 90
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 14 HVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTHI 65
H C C K ++ SS L H R H+GEKP+ C CG +F S L H H
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C+ C K FS SS L TH+RIH+GEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C CGK F+ SS L H+ H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHT 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ CSVC K FS SL+ H+RIHSG+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C VCGK F+ +L H+ H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP++C+ C K F S LN HRRIH+GEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C CGK F S+L HR H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C VC K FS +SL H+R+HSGEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C VC K F+ ++L H+ H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+VC C K F S+ L H+RIH+GEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C CGK F S+ L H+ H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIK 66
CS C K F ++ LN H R H+GEKP++C+ C ++L YH H K
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 1 MIYILRVLISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSN 56
++ +R EKPH C+ C K +S +L TH R H+GEKP+ C + C K F+ +S+
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 57 LYYHR 61
H+
Sbjct: 115 RAKHQ 119
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 5 LRVLISEKPHVCS--VCSKGFSTSSSLNTHR-RIHSGEKPHQCQV--CGKRFTASSNLYY 59
LR EKP++C CSK FS +S H+ R HS EKP+ C++ C KR+T S+L
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 60 H 60
H
Sbjct: 149 H 149
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTHI 65
CS + F L H R H+GEKPH+C + C K ++ NL H +H
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 12 KPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPHQCQV 46
KP++C C KGFS LN H +++H+ E+PH+CQV
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 12 KPHVCS--VCSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
+ H+CS C K + SS L H R H+GEKP C + C +RF S L HR TH
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C VC K F SSL H+RIH+GEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C VC K F S+L H+ H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHT 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E+P++C+VC K F+ S+L H++IH+GEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C VCGK FT SNL H+ H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ CS+C K F+ S L+ H++IH+GEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C +CGK FT S L+ H+ H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K FS +S L H+RIH+GEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F+ +S L H+ H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHT 36
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
KP++C+ C K FS SSL TH+ IH+GEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP+ C CGK F+ S+L H++ H
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIH 35
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EK + C VC K FS SS L TH+R+H+GEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EK ++C VCGK F+ SS+L H+ H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHT 36
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 9 ISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
+EKP C C K F S+LN+HR IH+GEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C C K F S L HRM H
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHT 36
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C KGFS S+LN H ++H+GEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C CGK F+ S L H H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHT 36
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
VC VC++ F+ L H R H+ EKP+ C +C + FT L H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTH-RRIHSG 38
R +EKP+ C +C++ F+ L H ++IHSG
Sbjct: 23 RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K FS SSL TH+ IH+G+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F+ S+L H+ H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHT 36
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ S+L TH++IH+GEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT SNL+ H+ H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHT 36
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K F+ ++L H+RIH+GEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F +NL H+ H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHT 36
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C K FS LN HRRIH+GEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP C CGK F+ L HR H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+VC C K F+ SS L+ HRR+H+GE
Sbjct: 8 EKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 19/29 (65%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SGEKP+ CQ CGK FT SS L HR H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C VCSK F+ + L H++ H+GEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C+VC K FT ++L H+ TH
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHT 36
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ CS C K FS+ S L H R HSGEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C CGK F++ S L H TH
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP CS C K F+T S+L H+R H+GEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C C K F SNL H+ TH
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHT 36
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
K H C C +GF+ S LN H+RIH+GEKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHI 65
K HQC CG+ FT S+L H+ H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHT 36
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
KP+ C+ C K FS +S L H+R+H+GEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHI 65
KP+QC CGK F+ +S L H+ H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHT 36
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C KGF T+S +H+R HSGEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP +C+ CGK F +S Y H+ +H
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSH 35
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKPH C C K FS +S L H+RIH+GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIKVN 68
EKPH+C+ CGK F+ +S L H+ H N
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGEN 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
+KP VC+ C K F SS L+ H+RIHSGEKP
Sbjct: 8 KKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG+KP C CGK F SS L H+ H
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIH 33
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ CS C K F + LN HRRIH+G +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F ++L HR H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K FS ++ L H+R+H+GEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C+ CGK F+ +++L H+ H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHT 36
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K F S L H+RIH+GEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP+ C+ CGK F S L H+ H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHT 36
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
C C K F + L H R H+GEKP +C CGK + NL H
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
SE+ CSVC + F L H H+GE P++C C ++F +L H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E+PH C+ C K F S+ L H+RIH+GEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
E+PH+C CGK F S++L H+ H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C K F+ +S L++H+R+H+GEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C+ CGKRFT +S L+ H+ H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHT 36
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F S+L TH+ IH+GEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F A SNL H++ H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHT 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K FS S L+ H+R H+GEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP+ C CGK F+ S L H+ TH
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHT 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ +S L H RIH+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT +S+L H H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C K F+ +S L++H+R+H+GEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP QC+ CGKRFT +S+L+ H+ H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHT 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K F +S L H+R+HSGEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C+ CGK F +S L H+ H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C VC K F SS L H +HSGE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++CQVCGK F SS+L H H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C KG+++ +L+ H+++H+GE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C+ CGK + + NL H+ H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHT 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ CS C K F S L+ H+RIH+GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIKVN 68
EKP++C CGK F S L+ H+ H N
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
++P+ C C K F T SSL HRR H+GEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
++P++C CGK F S+L HR +H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHT 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F SSL H+ HSGEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C CGK F A S+L H+ TH
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F +S L+ H+RIH+GEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F +S L H+ H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHT 36
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ +S L HR IH+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT +S+L HR H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKP 41
C+ C K F+ SSSL H+RIH+GEKP
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP+ C+ C K FS+ S L H+RIH+GEK
Sbjct: 8 EKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SGEKP+ C CGK F++ S L H+ H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHT 34
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C KGF L TH +H+GEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C+ CGK F +LY H M H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHT 36
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ +S L HRR+H+G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT +S+L HR H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E+ H CS C K F +S+ HRRIH+GEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
E+ H+C CGK F +SN HR H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHT 36
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP+ C C K F T S+L TH+ IH+GEK
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F SNL H++ H
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHT 36
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP++C+ C K F+ S+L H++IH+ +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIK 66
EKP+ C CGK FT SNL H+ H K
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTK 37
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K F +SS H+R+H+G++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F +S+ H+ H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHT 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ +S L HR IH+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT +S+L HR H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E+ + CS C K F+ S+L H+RIH+GEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+ C+ C K F+T S+L H+R H+GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C C K F SNL H+ TH
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP+ C C KG++ +L+ H+R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C+ CGK + NL H+ H+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHM 36
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
SGEKP+ C CGK FT S L H+ H V
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGV 36
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ S L H+ +H+G KP
Sbjct: 8 EKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTHIKV 67
K ++CS C ++ + L H H+GEKP C + C K FT+ +L H +TH
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG- 60
Query: 68 NDDF---KEILNLEPVSGSNDEKNLNKFNIVK 96
+F + +L + +N +K+ N+F+ +K
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 92
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 9 ISEKPHVC--SVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNL--YYHRM 62
EKP C C KGF++ L H H+GEK C C RFT +N+ +++R
Sbjct: 29 TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 88
Query: 63 THIK 66
+IK
Sbjct: 89 HNIK 92
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C+ C K F+ +S L H+RIH+G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
EKP++C CGK FT +S+L H+ H V
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGV 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP+ C C KG+ L+ H+R+H+GEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK + +L +H+ H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHT 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+ C+VC K F S+ LN H R+H+ E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIK 66
EKP+ C VCGK F S++L H H +
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E+ + CS C K F S+L+ H+RIH GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRF 51
EK + C C K F + H H+GE+ +QC CGK F
Sbjct: 48 EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF 88
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
++C VC + + +SL H IHS EK + C+ C K F + H + H
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EK + C+ C K FS +S L+ H++IH+GEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EK ++C CGK F+ +S L H+ H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
+KP+ C+ C K F+ +S L HR IH+GEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
+KP++C CGK FT +S+L HR H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHT 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K FS SL H R+H+G P
Sbjct: 8 EKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SGEKP+QC+ CGK F+ +L H H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+VC+ C K F S TH RIH+GE
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEKP+ C CGK F S+ H H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
+KP+VC+ C K F S L H RIH+GE
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG+KP+ C CGK F S L H H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K FS SL H R+H+G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C CGK F+ +L H H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYH 60
R HSGEKP++C +C RFT S + H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMH 34
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTHIKV 67
K ++CS C ++ + L H H+GEKP C + C K FT+ +L H +TH
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG- 69
Query: 68 NDDF---KEILNLEPVSGSNDEKNLNKFNIVK 96
+F + +L + +N +K+ N+F+ +K
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 9 ISEKPHVC--SVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNL--YYHRM 62
EKP C C KGF++ L H H+GEK C C RFT +N+ +++R
Sbjct: 38 TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Query: 63 THIKV 67
+IK+
Sbjct: 98 HNIKI 102
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 19 CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
C K F + L H+ H+ + P++C + C KRF+ S L H H
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRRIHSG---EKPHQCQVCGKRFT 52
L E PH C K FS S L H ++H+G +K C GK +T
Sbjct: 133 LPYECPH--EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C K F + L +H RIH+GEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHIKVND 69
SGEKP+ C CGK FT S L H+ H V+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSG 38
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
EKP+VCS C K F+ S L H+ IH+G
Sbjct: 8 EKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C +C K F S LN H +H+ EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C +CGK F S L H M H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHT 36
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SGEKP++C CGK F S L H+ TH
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+ C+ C K F S L H+R H+GE
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E P+ C C K FS L +H+R H+GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
E P++C CGK F+ L H+ TH
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHA 36
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E P +CS C K F+ ++L H++IH+GE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
E P C CGK FT +NL H+ H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
KP+ CS C K F + S L H R H+GEKP
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SG KP+ C CGK F + S L H TH
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHT 34
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EK H CS C K FS S L H+RIH+GE P
Sbjct: 8 EKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHIKVN 68
SGEK H+C C K F+ S L H+ H N
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGEN 37
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+KP C+ C K F +L TH+RIH+GEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
+KP +C CGK F A NL H+ H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHT 36
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKP 41
C+ C K F+ S+L+ H++IH+GEKP
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
KP C C + FS S L TH R H+GEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHI 65
KP QC+ C ++F+ S +L H TH
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C K ++ L H+R+H+GEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 13 PHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
P C C K F+TS +L H RIHSGEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 41 PHQCQVCGKRFTASSNLYYHRMTH 64
P +C+ CGK+FT S NL H H
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIH 25
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
KP+ CS C+K FS S L H+R H+G KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIKVNDD 70
KP+ C C K F+ S L H+ +H V
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEKP+ C VCG RF + YH +H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP CS C K FS+ S L H++ H+ EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHIK 66
SGEKP C C K F++ S L H+ TH +
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
KP+VC C + F+ +L H RIH+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP+ CS C K F+ S L+ H++ H+GE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT S L+ H+ +H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP+ CS C K F+ S L H++ H+GE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK FT S L H+ H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K F +S L H+ IH+GEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP++C CGK F +S+L H++ H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSG 38
+P+ CSVC K FS + TH R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
+P+ C VCGKRF+ + H H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EK H C C K F S+L H+R+H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EK H C CGK F S L H+ H+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHM 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+ CS C K F +S L H+R HSGE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C CGK F +S L H+ TH
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EK + C C K FS + L H R+HSGEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIK 66
KP+QC CGK F+ S L H +TH +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTR 37
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
KP+ CS C K FS S L H H+ EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
KP C +C K F+ +SSL H R H+GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP QC +CGK FT +S+L H H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 3 YILRVLISEK--PHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
Y+ R+L S+ VC +C FS+S SL H R E C VC K FT++ + H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRY--TEHTKVCPVCKKEFTSTDSALDH 119
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
KP+VC+ C K F + S L H R H+GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP+ C CGK F + S L H TH
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EK H C+ C K FS S L H+RIH+GE
Sbjct: 8 EKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.8 bits (68), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEK H+C CGK F+ S L H+ H
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIKVND 69
EKP++C CGK F S L H TH V+
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSG 40
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
EKP+ C+ C K F S L H R H+G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C +C F +L +H RIH+G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C++CG RF L H H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+KP+ C C K F LN H+R+H+GE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
E+P C+ C KGF S L H R+HS EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIK 66
E+P +C CGK F S+L H H +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSR 37
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SGE P++C CGK F L H+ TH
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
E P+ CS C K F+ L +H+R H+GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E P C+ C K FS S+ L+ H+ IH+GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIKVN 68
E P +C CGK F+ S++L H++ H N
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGEN 39
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKP 41
EKP C+ C FS S L+ HRR HSG KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 39 EKPHQCQV--CGKRFTASSNLYYHRMTHIKV 67
EKP C CG RF+ S L HR +H V
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGV 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 13 PHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
P+ CS C K FS L H+R+H+ EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EK C C FS +SSL H+ +H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 19 CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
C K F + L H+ H+ + P++C + C KRF+ S L H H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRRIHSG---EKPHQCQVCGKRFT 52
L E PH C K FS S L H ++H+G +K C GK +T
Sbjct: 30 LPYECPH--EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 75
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIKVN 68
EKP QC+ CG F+ S +L+ H +H + +
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 14/31 (45%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP C C FS S SL H R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 19 CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
C K F + L H+ H+ + P++C + C KRF+ S L H H
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRRIHSG---EKPHQCQVCGKRFT 52
L E PH C K FS S L H ++H+G +K C GK +T
Sbjct: 30 LPYECPH--EGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 75
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 4 ILRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
+L + S + H+C VC + F++ + H R+ + C+ C F +S L H
Sbjct: 19 VLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EKP +C CGK F S L H+ TH+
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP C+ C K F S L H+R H +K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP++C+ CG RF ++L H + H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C F + L H IH+G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIKV 67
K +QCQ C KRF SSNL THIK
Sbjct: 1 KTYQCQYCEKRFADSSNL----KTHIKT 24
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 12 KPHVCSVCSKGFSTSSSLNTH-RRIHSGEK 40
K + C C K F+ SS+L TH + HS EK
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 12 KPHVC--SVCSKGFSTSSSLNTHRRIHSGEK 40
+P +C S C K F+ S L H+R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 40 KPHQC--QVCGKRFTASSNLYYHRMTH 64
+P C CGKRFT S L H+ TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTH-RRIHSG---EKPHQCQVCGKRFTASSNLYYHR 61
R EKP+ CS C K F L+ H +R H C CGK FT + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH- 66
Query: 62 MTHIKVNDDFKEILNLEPVSG 82
D E N P SG
Sbjct: 67 -ADNCAGPDGVEGENSGPSSG 86
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
S KP+ C CS + ++LN H R H+GEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRR 34
+++ +VC+VC+ FST S+L+ H R
Sbjct: 111 IVNPSSYVCNVCNARFSTMSALSEHLR 137
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRR 34
+++ +VC+VC+ FST S+L+ H R
Sbjct: 93 IVNPSSYVCNVCNARFSTMSALSEHLR 119
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
R +G KP QC C + F+ S +L HR H+ V
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 39 EKPHQCQVCGKRFTASSNLYYH 60
+KP+ C +CGKR+ L YH
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRR-IHSGEKP 41
+KP+ C C K F ++SL H R H+GEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEK 40
VC VC++ F+ +L H R H+ EK
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHS---GEKPHQCQVCGKRFTASSNLYYHR 61
C +C +SLN H+R H+ C+ CGKRF ++ HR
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
S K H C +CGK+F + L H++ H
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLHT 33
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
S K H+C +C K F + +L +H+ +H+ +
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
++ + C C K F SL H RIH+G P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SG++ ++CQ CGK F +L H H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHT 34
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
++C C S L H R H+ +P+ C C F NL H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEK 40
VC VC++ F+ L H R H+ EK
Sbjct: 4 VCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
C +C K F LN H+ HSGEKP+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 40 KPHQCQVCGKRFTASSNLYYH 60
KP+ C+ CGKRF SS L H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHS 37
KP+VC C K F SS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
+G KP QC C F+ S +L HR H+ V
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHMLV 33
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEK 40
VC VC++ F+ L H R H+ EK
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
E P+ C C K FS L +H++ HSG+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
E P++C CGK F+ L H+ TH
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEK 40
+K H+C + C K + +S L H R H+GE+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
E P++C C K F+ SL H+R S P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
SGEKP+ C C + F+ ++ L H+ H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHS 37
EKP+ C+ C + FS ++ L H+++H+
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
S K C C+K F SL H RIH+ EK
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIKVND 69
KP+QC CG+ F+ ++ +M H++ +D
Sbjct: 2 KPYQCDYCGRSFSDPTS----KMRHLETHD 27
>pdb|1ZR9|A Chain A, Solution Structure Of A Human C2h2-Type Zinc Finger
Protein
Length = 124
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 42 HQCQVCGKRFTASSNLYYHRMTHIKVNDDFKEI--LNLEPVSGSNDEK 87
H+C C + F S+NL TH + D K + L++EP S E+
Sbjct: 51 HRCLACARYFIDSTNL----KTHFRSKDHKKRLKQLSVEPYSQEEAER 94
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIK 66
E+P+ C CGK F S+L H H +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFR 37
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHI 65
EK HQC+ CG+ F +L H++ H+
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHM 36
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG++P C++C FT +N H H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHS 37
++P VC +C F+T ++ H ++H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 27 SSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
++L H RIH ++P +C C SNL H
Sbjct: 23 AALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIKV 67
K +QCQ C R SSNL THIK
Sbjct: 1 KTYQCQYCEXRSADSSNL----KTHIKT 24
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 16 CSVCSKGFSTSSSLNTHRRIH 36
C +C + F S+L+ H+R+H
Sbjct: 4 CGLCERSFVEKSALSRHQRVH 24
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHS 37
EK C+ C K FS S L H RIH+
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHT 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,873,934
Number of Sequences: 62578
Number of extensions: 98111
Number of successful extensions: 621
Number of sequences better than 100.0: 195
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 197
Number of HSP's gapped (non-prelim): 394
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)