RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16685
(99 letters)
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 87.1 bits (217), Expect = 2e-24
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+KP C +C + FS S L TH R H+GEKP C +CG++F S H H
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 82.5 bits (205), Expect = 1e-22
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C V C + FS S SL H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
Score = 53.2 bits (129), Expect = 4e-11
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EKP C +C + F+ S H +IH +K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 87.2 bits (217), Expect = 2e-24
Identities = 22/54 (40%), Positives = 27/54 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
C +C K F LN H+ HSGEKP+ C VCG RF + YH +H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 75.6 bits (187), Expect = 8e-20
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE--KPHQCQVCGKRFTASSNLYYH-RMTH 64
EKP+ C VC F ++ H R H G KP+ CQ CGK F+ +L H + H
Sbjct: 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 47.9 bits (115), Expect = 6e-09
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG C++CGK F +L H+++H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH 30
Score = 47.5 bits (114), Expect = 8e-09
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTH-RRIHSGEK 40
KP++C C KGFS LN H +++HSG
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 85.6 bits (213), Expect = 1e-23
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
KP+ C C + SSSLN H RIHS E+P +CQ+C SS L H +H
Sbjct: 34 VKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 85.6 bits (213), Expect = 1e-23
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
PH C VC K FS L TH R H+G KP++C+ C SS+L H H
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Score = 59.7 bits (146), Expect = 2e-13
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+P C +C SS L H R H+G+
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 47.4 bits (114), Expect = 9e-09
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
PH+C+VCGK F+ L H H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCH 31
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 84.9 bits (211), Expect = 1e-23
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
KP C +C + FS S L TH R H+GEKP C +CG++F S HR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
Score = 74.5 bits (184), Expect = 2e-19
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHR---MTH 64
EKP C +C + F+ S HR I P + + + +L
Sbjct: 29 EKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 46.3 bits (111), Expect = 2e-08
Identities = 5/33 (15%), Positives = 10/33 (30%), Gaps = 3/33 (9%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHR---RIHSGEK 40
P + + S + L + GE+
Sbjct: 56 ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 85.6 bits (213), Expect = 2e-23
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
+ HVC+ C K F SS L H+ +H+GEKP QC CGKRF+ NL H H
Sbjct: 32 PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 81.0 bits (201), Expect = 1e-21
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
EKP C+ C K FS +L TH RIH+G++P+ C C K+F S+NL H +TH
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 78.3 bits (194), Expect = 1e-20
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 9 ISEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ + C C+K F +S++ H H G + H C CGK F SS L H++ H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
Score = 56.0 bits (136), Expect = 8e-12
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQ 43
++P+VC C+K F+ S++L +H H+ K +Q
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 84.4 bits (209), Expect = 2e-23
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHS---GEKPHQCQVCGKRFTASSNLYYHRMTH 64
C +C +SLN H+R H+ C+ CGKRF ++ HR
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 53.6 bits (129), Expect = 2e-11
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG QC++CG ++L +H+ H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKH 30
Score = 49.3 bits (118), Expect = 1e-09
Identities = 8/39 (20%), Positives = 9/39 (23%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGK 49
C C K F S+ HR Q
Sbjct: 36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 82.5 bits (205), Expect = 1e-22
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+P+ C C K F S + H IH+GEKPH+CQVCGK F+ SSNL H H
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 75.5 bits (187), Expect = 6e-20
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
C +C K F SS+L+TH IHS +P+ CQ CGKRF S++ H H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 47.4 bits (114), Expect = 7e-09
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
EKPH C VC K FS SS+L TH R H+G
Sbjct: 55 EKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 30.1 bits (69), Expect = 0.031
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 43 QCQVCGKRFTASSNLYYHRMTH 64
C++CGK F SS L H + H
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIH 24
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 81.3 bits (202), Expect = 2e-22
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+KP+ C C F +L +H+ +H+GEKP++C +CG +F +NL H H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 61.7 bits (151), Expect = 2e-14
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 26 SSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ H + +KP++C C F NL H+ H
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 54.8 bits (133), Expect = 6e-12
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
EKP+ C++C F+ ++L TH RIHSGEKP+
Sbjct: 43 EKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 81.3 bits (202), Expect = 2e-22
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ + C C K FS SS L+ HRR H+GEKP++C CGK F S+L H H
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 61.7 bits (151), Expect = 1e-14
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 26 SSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
S S + ++C CGK F+ SS+L HR TH
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 52.8 bits (128), Expect = 4e-11
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
EKP+ C C K F S L H R+H+G P
Sbjct: 44 EKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 84.8 bits (211), Expect = 3e-22
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS + L H+R H+GEKP++C CGK F+ NL+ H+ TH
Sbjct: 103 EKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 84.0 bits (209), Expect = 4e-22
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS S L H+R H+GEKP++C CGK F+ +L H+ TH
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH 72
Score = 82.9 bits (206), Expect = 1e-21
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS L H+R H+GEKP++C CGK F+ +NL H+ TH
Sbjct: 47 EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 82.9 bits (206), Expect = 1e-21
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS ++L H+R H+GEKP+ C CGK F+ ++L H+ TH
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 82.5 bits (205), Expect = 2e-21
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS +L+TH+R H+GEKP++C CGK F+ L H+ TH
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 66.7 bits (164), Expect = 2e-15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 FSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SSS + GEKP+ C CGK F+ S +L H+ TH
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
Score = 54.8 bits (133), Expect = 6e-11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKP 41
EKP+ C C K FS +LN H+R H+G+K
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 82.6 bits (205), Expect = 3e-22
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C + FS S L H+R H+G KP QC+ C ++F+ S +L H TH
Sbjct: 34 EKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 81.8 bits (203), Expect = 6e-22
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
KP C C + FS S L TH R H+GEKP C+ C K+F S L H H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 77.9 bits (193), Expect = 2e-20
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 11 EKPHVCS--VCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
++P +C+ C+K + S L H R H+GEKP+QC C +RF+ S L H+ H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Score = 40.2 bits (95), Expect = 8e-06
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 37 SGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
S ++P C C KR+ S+L H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH 31
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 82.1 bits (204), Expect = 4e-22
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P+ C +C K F L HR IHS EKP +CQ CGK F S L H+ H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 81.3 bits (202), Expect = 7e-22
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+K +C C + F+ S +L H R H+ E+P+ C +C K F +L HR H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIH 68
Score = 64.0 bits (157), Expect = 5e-15
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 26 SSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SS + R +K C+ CG+ FT S NL H TH
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
Score = 58.6 bits (143), Expect = 5e-13
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C KGF S +L H+ +H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 81.0 bits (201), Expect = 4e-22
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
P CS CS S+ ++L H RIH ++P +C C SNL H
Sbjct: 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 50.6 bits (122), Expect = 3e-10
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
++P C+ CS S+L+ H + G+
Sbjct: 35 DRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 47.9 bits (115), Expect = 4e-09
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
S P +C C ++ + L H H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 80.2 bits (199), Expect = 6e-22
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C K FS SS L H+R+H+GEKP++C CGK F+ +S L H+ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 54.8 bits (133), Expect = 7e-12
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 29 LNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ IHSGEKP+ C CGK F+ SS L H+ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVH 37
Score = 54.4 bits (132), Expect = 9e-12
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
EKP+ C C K FS +S L H+RIH+
Sbjct: 40 EKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 79.1 bits (196), Expect = 2e-21
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRI--HSGEKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
E + C VCS+ ++ S+ H K + C C K FT N+ H K+
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 51.0 bits (123), Expect = 2e-10
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
GE ++C+VC + +T SN H +T
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS 33
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 78.3 bits (194), Expect = 3e-21
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
+ VC VC++ F+ L H R H+ EKP+ C +C + FT L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 45.9 bits (110), Expect = 1e-08
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSGEK 40
EKP+ C +C++ F+ L H ++IHSG
Sbjct: 28 EKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 77.6 bits (192), Expect = 8e-21
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE--KPHQCQVCGKRFTASSNLYYH-RMTH 64
EKP+ C +C F+ S ++ H E C C S+L H R H
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 65.6 bits (161), Expect = 4e-16
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 28 SLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
S + R HSGEKP++C +C RFT S + H +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK 38
Score = 50.2 bits (121), Expect = 5e-10
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPH 42
+ C C + S L H R+ HS P
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 78.3 bits (194), Expect = 1e-20
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+P+ C VC K F L H +IH+G KP++C +C KRF + HR
Sbjct: 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVT 86
Score = 77.1 bits (191), Expect = 3e-20
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+K + C C K F+ S + H +H G +P+ C VCGK+F +L H H
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Score = 71.3 bits (176), Expect = 5e-18
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNL 57
KP+ C++C+K F S HR + S K ++ + T +S
Sbjct: 63 IKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 48.2 bits (116), Expect = 5e-09
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG+K + CQ CGK FT S H H
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMH 32
Score = 31.3 bits (72), Expect = 0.018
Identities = 2/21 (9%), Positives = 9/21 (42%)
Query: 11 EKPHVCSVCSKGFSTSSSLNT 31
K + + + + +S ++
Sbjct: 89 TKSYEAAKAEQNTTEASGPSS 109
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 79.3 bits (196), Expect = 1e-20
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
EKP C C K F+ S +L H+R H+GEKP +C+ C +RF SS+ H H
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 73.1 bits (180), Expect = 4e-18
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
C K F L H R+H+GEKP C CGK F S NL H+ TH
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 70.8 bits (174), Expect = 3e-17
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQ---------CQVCGKRFTASSNLYYHR 61
+ C + FST L TH + P Q C GK F A L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 62 MTH 64
H
Sbjct: 83 RVH 85
Score = 55.8 bits (135), Expect = 2e-11
Identities = 5/46 (10%), Positives = 11/46 (23%)
Query: 19 CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ + I + + C + F+ L H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
Score = 55.4 bits (134), Expect = 2e-11
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C + F+ SS H +H+ +K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 77.2 bits (191), Expect = 2e-20
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C C F+ S L H R H+G +P QCQ C + F+ S +L H H
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 70.6 bits (174), Expect = 6e-18
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
+ C K ++ SS L H R H+GEKP+ C CG +F S L H H
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Score = 39.4 bits (93), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ CGK +T SS+L H TH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTH 30
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 77.5 bits (192), Expect = 3e-20
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH-RMTHI 65
C C K F + L H R H+GEKP +C CGK + NL H +
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Score = 77.2 bits (191), Expect = 4e-20
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
E+ CSVC + F L H H+GE P++C C ++F +L H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 75.6 bits (187), Expect = 2e-19
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRR---IHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP C C K + +L H ++ E+ C VC + F L H ++H
Sbjct: 33 EKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 47.5 bits (114), Expect = 1e-08
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSGEK 40
E P+ CS CS+ F L +H ++HSG
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 46.0 bits (110), Expect = 6e-08
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG +C C K+F + L H H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 76.1 bits (188), Expect = 6e-20
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C+ C F+ S L H R H+G KP QC VC + F+ S +L H H
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 71.9 bits (177), Expect = 3e-18
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
+ H C C+K ++ SS L H R H+GEKP++C + C RF S L H H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Score = 44.9 bits (107), Expect = 8e-08
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 23 FSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+S RRIH + P C K +T SS+L H TH
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH 40
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 74.9 bits (185), Expect = 1e-19
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRI-HSGEKPHQCQ--VCGKRFTASSNLYYHRMTH 64
C C + FS LN H++ H +K C CGK F +L H H
Sbjct: 5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Score = 69.1 bits (170), Expect = 2e-17
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 11 EKPHVCS--VCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRF 51
+K C C K F+ L H ++HS + + C+ G
Sbjct: 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 42.5 bits (101), Expect = 5e-07
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 36 HSGEKPHQCQV--CGKRFTASSNLYYH-RMTH 64
SG C CG+ F+ L +H + H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 75.3 bits (186), Expect = 1e-19
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE----KPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ CS C K F L+ H + + C CGK FT + + H
Sbjct: 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 64.9 bits (159), Expect = 1e-15
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRF 51
VCS C K F+ +++ H +G + + G
Sbjct: 44 VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 58.3 bits (142), Expect = 4e-13
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 28 SLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
S + R H+GEKP+ C C K F L H +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 73.0 bits (180), Expect = 3e-19
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPHQCQVCGKRFT 52
KP++C C KGFS LN H +++H+ E+PH+CQV +
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 47.6 bits (114), Expect = 3e-09
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYH-RMTH 64
+ S KP+ CQ CGK F+ +L H + H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 29.9 bits (68), Expect = 0.027
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 11 EKPHVCSVCSKGFST 25
E+PH C V G S+
Sbjct: 39 ERPHKCQVWVSGPSS 53
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 75.3 bits (186), Expect = 9e-19
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 11 EKPHVCS--VCSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
EKP C C KGF++ L H H+GEK C C RFT +N+ H
Sbjct: 40 EKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 74.2 bits (183), Expect = 3e-18
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
K ++CS C ++ + L H H+GEKP C + C K FT+ +L H +TH
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 68.4 bits (168), Expect = 4e-16
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
+VC C K F + L H+ H+ + P++C + C KRF+ S L H H
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 68.0 bits (167), Expect = 8e-16
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 11 EKPHVCS--VCSKGFSTSSSLNTHRRIHSGEK--PHQCQV--CGKRFTASSNLYYHRMTH 64
EK C C F+T +++ H K + C CGK F + L H+ +H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 62.6 bits (153), Expect = 7e-14
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 11 EKPHVCS--VCSKGFSTSSSLNTHRRIHSG---EKPHQCQVCGKRFTASSNLYYHRMTH 64
+ P+ C C K FS S L H ++H+G +K C GK + + L + H
Sbjct: 132 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTW--TLYLKHVAECH 188
Score = 48.7 bits (117), Expect = 1e-08
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 32 HRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
+ + K + C CG + + L H H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH 37
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 72.3 bits (178), Expect = 9e-19
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+P+ C V C + FS S L H RIH+G+KP QC++C + F+ S +L H TH
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 41.1 bits (97), Expect = 2e-06
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHS 37
+KP C +C + FS S L TH R H+
Sbjct: 47 QKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.6 bits (93), Expect = 7e-06
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 25 TSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
N + +P+ C V C +RF+ S L H H
Sbjct: 3 PHPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIH 44
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 74.6 bits (184), Expect = 1e-18
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 11 EKPHVC--SVCSKGFSTSSSLNTH-RRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
EKP++C CSK FS +S H R HS EKP+ C++ C KR+T S+L H T
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 73.8 bits (182), Expect = 2e-18
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 11 EKPHVCSVC-----SKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMT 63
K VC + F L H R H+GEKPH+C C K ++ NL H +
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Query: 64 H 64
H
Sbjct: 92 H 92
Score = 72.6 bits (179), Expect = 5e-18
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQ--VCGKRFTASSNLYYHRM-TH 64
EKPH C+ C K +S +L TH R H+GEKP+ C+ C K F+ +S+ H+ TH
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 68.4 bits (168), Expect = 2e-16
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH---RRIHSGEKPHQCQVCG-----KRFTASSNLYYHRM 62
E CS+ F + L H IH K C G + F A L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 63 TH 64
H
Sbjct: 61 RH 62
Score = 44.1 bits (105), Expect = 5e-07
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSG 38
EKP+VC + C+K ++ SSL H + G
Sbjct: 126 EKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 69.0 bits (169), Expect = 2e-17
Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
+ H+CS C K + SS L H R H+GEKP C C +RF S L HR TH
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.5 bits (103), Expect = 2e-07
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 26 SSSLNTHRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
SS + + S + H C CGK + SS+L H TH
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 65.7 bits (161), Expect = 4e-16
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRM-TH 64
+ P+ C C K FS S L H ++H+G + C + H H
Sbjct: 29 QLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 64.9 bits (159), Expect = 9e-16
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 14 HVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQC--QVCGKRFTASSNLYYHRMTH 64
+VC C K F + L H+ H+ + P++C + C KRF+ S L H H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 59.9 bits (146), Expect = 4e-14
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCG 48
EKP C C KGF T+S +H+R HSGEKP G
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP +C+ CGK F +S Y H+ +H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.8 bits (146), Expect = 5e-14
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQ 45
E+P++C+VC K F+ S+L H++IH+GEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 5e-12
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE+P+ C VCGK FT SNL H+ H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 7e-14
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+VC K F S+ LN H R+H+ E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 52.1 bits (126), Expect = 4e-11
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+GEKP+ C VCGK F S++L H H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 59.1 bits (144), Expect = 8e-14
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C KGFS S+LN H ++H+GEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP +C CGK F+ S L H H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 59.1 bits (144), Expect = 8e-14
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQ 45
EKP+ C VC K F SSL H+RIH+GEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 5e-12
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C VC K F S+L H+ H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
++P+ C C K F T SSL HRR H+GEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 1e-11
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G++P++C CGK F S+L HR +H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP++C+ C K F+ S+L H++IH+ +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 54.1 bits (131), Expect = 7e-12
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP+ C CGK FT SNL H+ H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 1e-13
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
KP+VC+ C K F + S L H R H+GE
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G KP+ C CGK F + S L H TH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS C K F+ S L+ H++ H+GE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 54.4 bits (132), Expect = 6e-12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT S L+ H+ +H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS+C K F+ S L+ H++IH+GEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 1e-11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C +CGK FT S L+ H+ H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+VC C K F S+ L H+RIH+GEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP+ C CGK F S+ L H+ H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
KP+ CS C+K FS S L H+R H+G KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 53.3 bits (129), Expect = 2e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G KP+ C C K F+ S L H+ +H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C +C K F S LN H +H+ EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 55.2 bits (134), Expect = 2e-12
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP +C +CGK F S L H M H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 58.7 bits (143), Expect = 1e-13
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F S L H R H+G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 52.1 bits (126), Expect = 4e-11
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP++C CGK F S L H TH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E P +CS C K F+ ++L H++IH+GE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 54.0 bits (131), Expect = 7e-12
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE P C CGK FT +NL H+ H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
K H C C +GF+ S LN H+RIH+GEKP
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 4e-11
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ S K HQC CG+ FT S+L H+ H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C KG+++ +L+ H+++H+GE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 54.5 bits (132), Expect = 5e-12
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C+ CGK + + NL H+ H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.7 bits (143), Expect = 1e-13
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EK + C VC K FS SS L TH+R+H+GEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 56.0 bits (136), Expect = 1e-12
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ GEK ++C VCGK F+ SS+L H+ H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 58.3 bits (142), Expect = 1e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP CS C K FS+ S L H++ H+ EKP
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 46.4 bits (111), Expect = 8e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEKP C C K F++ S L H+ TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-13
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+ S+L TH++IH+GEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 5e-12
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT SNL+ H+ H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 1e-13
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS C K FS S L H H+ EKP
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 51.4 bits (124), Expect = 1e-10
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ GEKP+QC CGK F+ S L H +TH
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C+ C K F S L H+R H +K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 49.9 bits (120), Expect = 4e-10
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP +C CGK F S L H+ TH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+ H CS C K F +S+ HRRIH+GEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 54.9 bits (133), Expect = 4e-12
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ GE+ H+C CGK F +SN HR H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CSVC K FS SL+ H+RIHSG+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 51.7 bits (125), Expect = 6e-11
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+GEKP++C VCGK F+ +L H+ H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP CS C K F+T S+L H+R H+GEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 2e-11
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP +C C K F SNL H+ TH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 19/34 (55%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS C K FS+ S L H R HSGEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 54.1 bits (131), Expect = 7e-12
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP+ C CGK F++ S L H TH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS C K F S L+ H+RIH+GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F S L+ H+ H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 58.3 bits (142), Expect = 2e-13
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS C K F+ S L H++ H+GE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 54.5 bits (132), Expect = 5e-12
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT S L H+ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C+ C K FS SS L TH+RIH+GEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP +C CGK F+ SS L H+ H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C KG+ L+ H+R+H+GEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP++C CGK + +L +H+ H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 19/34 (55%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C K FS LN HRRIH+GEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP C CGK F+ L HR H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C KGF L TH +H+GEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 2e-12
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C+ CGK F +LY H M H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+ + CS C K F+ S+L H+RIH+GEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 6e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE+ ++C CGK F S L H+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 57.9 bits (141), Expect = 2e-13
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C KG++ +L+ H+R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 55.6 bits (135), Expect = 2e-12
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ S EKP++C+ CGK + NL H+ H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 58.0 bits (141), Expect = 3e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C K F +S L H+R+HSGEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 52.6 bits (127), Expect = 3e-11
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP+ C+ CGK F +S L H+ H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 57.5 bits (140), Expect = 3e-13
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E P+ CS C K F+ L +H+R H+GE
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 48.3 bits (116), Expect = 1e-09
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 33 RRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGE P++C CGK F L H+ TH
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTH 33
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 57.5 bits (140), Expect = 3e-13
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
EKP+ C +C F +L +H RIH+G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 54.0 bits (131), Expect = 6e-12
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
GEKP+ C++CG RF L H H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
+K C+ C K F+ SSSL H+RIH+GEKP
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 1e-11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G+K +C C K FT SS+L H+ H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C VC K FS +SL H+R+HSGEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 7e-11
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C VC K F+ ++L H+ H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 3e-13
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
KP++C+ C K FS SSL TH+ IH+GEKP
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 4e-11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G KP+ C CGK F+ S+L H++ H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 57.6 bits (140), Expect = 3e-13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EK C C FS +SSL H+ +H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 50.2 bits (121), Expect = 3e-10
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ GEK +C+ C F+ +S+L H+ H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.5 bits (140), Expect = 3e-13
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+T S+L H+R H+GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C C K F SNL H+ TH
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.5 bits (140), Expect = 4e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ CS C K F + LN HRRIH+G +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP++C CGK F ++L HR H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 4e-13
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F SSL H+ HSGEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F A S+L H+ TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 4e-13
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C VC K F SS L H +HSGE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 53.7 bits (130), Expect = 9e-12
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+GEKP++CQVCGK F SS+L H H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 4e-13
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+P C+ C KGF S L H R+HS EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 49.1 bits (118), Expect = 7e-10
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGE+P +C CGK F S+L H H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 5e-13
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EK + C C K FS + L H R+HSGEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 53.3 bits (129), Expect = 2e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEK + C+ CGK F+ + L H H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.1 bits (139), Expect = 5e-13
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C K F+ ++L H+RIH+GEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 9e-11
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F +NL H+ H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 57.2 bits (139), Expect = 5e-13
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C FS S SL H R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 53.7 bits (130), Expect = 9e-12
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP QC+ CG F+ S +L+ H +H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP++C+ C K F S LN HRRIH+GEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP+ C CGK F S+L HR H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C K F S L H+RIH+GEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 5e-11
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP+ C+ CGK F S L H+ H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
+KP+ C C K F LN H+R+H+GE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 51.0 bits (123), Expect = 1e-10
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SG+KP++C+ C K F +L H+ H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C K F+ +S L++H+R+H+GEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 3e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP +C+ CGKRFT +S L+ H+ H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 6e-13
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+ + CS C K F S+L+ H+RIH GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 51.8 bits (125), Expect = 6e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE+ ++C CGK F S L H+ H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 7e-13
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKPH C C K FS +S L H+RIH+GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 51.8 bits (125), Expect = 6e-11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKPH+C+ CGK F+ +S L H+ H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 56.7 bits (138), Expect = 7e-13
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E P+ C C K FS L +H++ HSG+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 48.6 bits (117), Expect = 1e-09
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE P++C CGK F+ L H+ TH
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.8 bits (138), Expect = 7e-13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K FS S L+ H+R H+GEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP+ C CGK F+ S L H+ TH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 56.4 bits (137), Expect = 8e-13
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
P+ CS C K FS L H+R+H+ EKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.9 bits (115), Expect = 2e-09
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G P++C C K F+ L H+ H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 8e-13
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F S+L TH+ IH+GEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F A SNL H++ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 9e-13
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E P+ C C K FS L +H+R H+GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE P++C CGK F+ L H+ TH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 1e-12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
K C+ C K F+ S+L+ H++IH+GEKP
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 7e-11
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G K +C CGK FT S L H+ H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 1e-12
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C K F+ +S L++H+R+H+GEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 5e-12
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP QC+ CGKRFT +S+L+ H+ H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 1e-12
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F +S L+ H+RIH+GEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 51.4 bits (124), Expect = 7e-11
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F +S L H+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.4 bits (137), Expect = 1e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C VCSK F+ + L H++ H+GEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 1e-11
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C+VC K FT ++L H+ TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-12
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K FS SSL TH+ IH+G+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 51.0 bits (123), Expect = 1e-10
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F+ S+L H+ H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 56.0 bits (136), Expect = 1e-12
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
+KP C+ C K F +L TH+RIH+GEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 52.2 bits (126), Expect = 4e-11
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G+KP +C CGK F A NL H+ H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 56.0 bits (136), Expect = 1e-12
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EK + C+ C K FS +S L+ H++IH+GEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-10
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEK ++C CGK F+ +S L H+ H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-12
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C K F +SS H+R+H+G++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 51.8 bits (125), Expect = 6e-11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F +S+ H+ H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-12
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K FS +S L H+RIH+GEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 1e-10
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F+ +S L H+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 56.0 bits (136), Expect = 1e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C K FS ++ L H+R+H+GEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-10
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C+ CGK F+ +++L H+ H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 2e-12
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+ +S L H RIH+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 53.3 bits (129), Expect = 2e-11
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP++C CGK FT +S+L H H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+PH C+ C K F S+ L H+RIH+GEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 4e-11
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE+PH+C CGK F S++L H+ H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C K F + L +H RIH+GEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ SGEKP +C+ CGK F + +L H H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C C K F +S L H+ IH+GEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 4e-11
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK F +S+L H++ H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+ +S L HR IH+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT +S+L HR H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 55.7 bits (135), Expect = 2e-12
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
E P++C C K F+ SL H+R S P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 48.8 bits (117), Expect = 7e-10
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
GE P+ C CGK FT +L H+ +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 2e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
KP+ C+ C K FS +S L H+R+H+GEKP
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 52.2 bits (126), Expect = 5e-11
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G KP+QC CGK F+ +S L H+ H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 2e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+ +S L H+RIH+G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 52.1 bits (126), Expect = 5e-11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT +S+L H+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 55.2 bits (134), Expect = 3e-12
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
E+P+ C+ C K F S L H + H EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 49.1 bits (118), Expect = 6e-10
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGE+P+ C CGK F S+L H H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-12
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+ +S L HR IH+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT +S+L HR H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
+KP+ C+ C K F+ +S L HR IH+GEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 3e-11
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +G+KP++C CGK FT +S+L HR H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 3e-12
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP C C K ++ L H+R+H+GEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 1e-10
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP +C CGK + +L H+ H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 54.9 bits (132), Expect = 4e-12
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVC 47
+ K C +C K F LN H+ HSGEKP+
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 40.3 bits (94), Expect = 2e-06
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
K C++CGK F +L H+++H
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 4e-12
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C K F+ +S L HRR+H+G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 52.5 bits (127), Expect = 4e-11
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GEKP++C CGK FT +S+L HR H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 54.5 bits (132), Expect = 5e-12
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EK H C C K F S+L H+R+H GEK
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 53.0 bits (128), Expect = 2e-11
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEK H C CGK F S L H+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 54.1 bits (131), Expect = 6e-12
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
EKP+ C C F + L H IH+G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 53.3 bits (129), Expect = 1e-11
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
GEKP++C+ CG RF ++L H + H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 53.8 bits (130), Expect = 8e-12
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEKPHQCQ 45
EKP C+ C FS S L+ HRR HSG KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 51.9 bits (125), Expect = 5e-11
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 31 THRRIHSGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
+ +GEKP C CG RF+ S L HR +H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 53.0 bits (128), Expect = 2e-11
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
GEKP++C CGK F+ +L H H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 53.0 bits (128), Expect = 2e-11
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
EKP+ C C K FS SL H R+H+G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 53.0 bits (128), Expect = 2e-11
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPHQC 44
+KP+ C C K F ++SL H R H+GEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 52.2 bits (126), Expect = 4e-11
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYH-RMTH 64
+ +G+KP++C CGK F +++L H R H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 52.6 bits (127), Expect = 2e-11
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
++ + C C K F SL H RIH+G P
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 42.6 bits (101), Expect = 2e-07
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG++ ++CQ CGK F +L H H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 52.4 bits (125), Expect = 5e-11
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
++C C S L H R H+ +P+ C C F NL H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 39.3 bits (91), Expect = 7e-06
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+R +P+ C+ C+ F T +L H + + K
Sbjct: 21 IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 49.6 bits (119), Expect = 3e-10
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
R +G KP QC C + F+ S +L HR H+ V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 38.1 bits (89), Expect = 1e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIH 36
KP C C + FS S L HR+ H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 48.9 bits (117), Expect = 8e-10
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
EKP+ C+ C + FS ++ L H+++H+ +
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.5 bits (103), Expect = 1e-07
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEKP+ C C + F+ ++ L H+ H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.7 bits (117), Expect = 9e-10
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ K + C CGK FT +L H+ H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 43.7 bits (104), Expect = 7e-08
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
K + C+ C K F+ L H++IH+ +
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 47.8 bits (113), Expect = 9e-09
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 24 STSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH-RMTHIKVNDDFKEILNLEPVSG 82
S+ SS + I +G +C+ C + L H T +D+ + N
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 83 SNDEKNL 89
+++L
Sbjct: 62 KPRKRSL 68
Score = 39.4 bits (91), Expect = 2e-05
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRI--HSGEKPHQCQVCGKRFTASSN 56
C CS + T L H H + H+ + +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Score = 39.4 bits (91), Expect = 2e-05
Identities = 9/50 (18%), Positives = 15/50 (30%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
+ + SL +K +C CG F + +L H
Sbjct: 50 HETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 29.3 bits (65), Expect = 0.11
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTH--RRIHSGEKPHQ 43
++K C C F + L+ H + H +
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 46.6 bits (110), Expect = 1e-08
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 25 TSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHR 61
+S S ++IH G++ +C CG F S L +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
Score = 45.0 bits (106), Expect = 6e-08
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
++ + ++ CS C F S+ S K C+ C K + L
Sbjct: 11 KIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 40.8 bits (95), Expect = 2e-06
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
L K +C C K ++LN SG+K
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 46.5 bits (110), Expect = 2e-08
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 9/63 (14%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPHQ--------CQVCGKRFTASSNLYYHR 61
+ C + FST L TH H G C GK F A L H
Sbjct: 23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI 82
Query: 62 MTH 64
H
Sbjct: 83 RVH 85
Score = 43.8 bits (103), Expect = 3e-07
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQC 44
C K F L H R+H+GEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 33.8 bits (77), Expect = 0.002
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 35 IHSGEKPHQCQVCGKRFTASSNLYYH-RMTHI 65
I + + C + F+ L H M H+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV 50
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 47.2 bits (111), Expect = 2e-08
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1 MIYILRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
+Y L + VC +C FS+S SL H R E C VC K FT++ + H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 31.1 bits (69), Expect = 0.024
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 18 VCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ + SS C +C F++S +L H
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 43.3 bits (102), Expect = 1e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
E P CS C + F+ + L H R H+ +
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 41.4 bits (97), Expect = 7e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ +GE P +C C + FT + L H TH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 40.7 bits (96), Expect = 1e-06
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGEK 40
+P +C+ C K F+ S L H+R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 33.4 bits (77), Expect = 8e-04
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 40 KPHQCQV--CGKRFTASSNLYYHRMTH 64
+P C CGKRFT S L H+ TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 44.1 bits (103), Expect = 1e-06
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ S S + S +QC VC + +L H +H
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 40.2 bits (93), Expect = 3e-05
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHS 37
S + C VCS + L+ H H
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 39.6 bits (93), Expect = 3e-06
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGEK 40
+K H+C + C K + +S L H R H+GE+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 31.6 bits (72), Expect = 0.004
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 37 SGEKPHQCQV--CGKRFTASSNLYYHRMTH 64
+K H C + CGK + +S+L H H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 39.2 bits (92), Expect = 3e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+ VC VC++ F+ L H R H+ EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 28.8 bits (65), Expect = 0.034
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIK 66
+ C+VC + F +L H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 39.0 bits (90), Expect = 6e-06
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
KP+VC C + F+ +L H RIH+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 24.3 bits (52), Expect = 1.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP+ C C ++F L H H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 37.6 bits (86), Expect = 2e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SGEKP+ C VCG RF + YH +H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 30.7 bits (68), Expect = 0.012
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
EKP+ C VC F ++ H R H G
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 37.6 bits (86), Expect = 7e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMT 63
VC CS F + H K C C + F +S +++ H++
Sbjct: 44 VCPYCSLRFFSPELKQEHES-KCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 34.5 bits (78), Expect = 0.001
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+++ + C +C+ S+ +H R+ C C RF + H
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKC 65
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 35.1 bits (80), Expect = 2e-04
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
KP C +C K F+ +SSL H R H+GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 36.0 bits (82), Expect = 2e-04
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 5 LRVLISEKPHV-CSVCSK-GFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRM 62
+ I +K V C C G T L H ++ C CGK+ + + + YH M
Sbjct: 25 WYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM 83
Query: 63 T 63
Sbjct: 84 A 84
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 33.6 bits (76), Expect = 5e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSG 38
+P+ CSVC K FS + TH R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.5 bits (60), Expect = 0.16
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
+P+ C VCGKRF+ + H H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.9 bits (79), Expect = 6e-04
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 9 ISEKPHV-CSVCSK-GFSTSSSLNTH-RRIHSGEKPHQCQVCGKRFTASSNLYYHRMT-- 63
I E+ C C+ T L H + +CQ C K+F + + L YH M
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 64 -HIKVNDDFKEILNLEPVSG 82
+ + E P SG
Sbjct: 79 SAKPSDAEASEGGESGPSSG 98
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 32.4 bits (73), Expect = 0.003
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHR 61
+KP+ C +CGKR+ L YH
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHY 27
Score = 26.7 bits (58), Expect = 0.45
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRR-IHSGEKPHQ 43
+KP+ C +C K + L+ H H E+ +
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGE 38
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (72), Expect = 0.003
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
EK H C C + F SL H+ +H G+K
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 31.3 bits (70), Expect = 0.007
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTHI 65
S EK HQC+ CG+ F +L H++ H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.005
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 39/115 (33%)
Query: 2 IYILRVLI-SEKPHVCSVCSKGFSTS--------------SSLNTHRRIHSGEKPHQCQV 46
+ I L+ K V S G S S L+ R S K
Sbjct: 366 VEI--SLVNGAKNLVVS----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL----K 415
Query: 47 CGKRF---TA---SSNLYYHRMTHIKVNDDFKEILNLE------PVSGSNDEKNL 89
RF + S + + D K ++ PV + D +L
Sbjct: 416 FSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 30.5 bits (68), Expect = 0.011
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG++P C++C FT +N H H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 29.0 bits (64), Expect = 0.042
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHS 37
++P VC +C F+T ++ H ++H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHT 31
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.011
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
S K H+C +C K F + +L +H+ +H+ +
Sbjct: 6 SGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 29.8 bits (66), Expect = 0.021
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
S K H C +CGK+F + L H++ H
Sbjct: 5 SSGKTHLCDMCGKKFKSKGTLKSHKLLH 32
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.6 bits (68), Expect = 0.012
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
S KP+ C CS + ++LN H R H+GEK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (68), Expect = 0.012
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 9 ISEKPHVCSVCSKGFSTSSSLNTHRRIHS 37
EK C+ C K FS S L H RIH+
Sbjct: 8 QKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.3 bits (62), Expect = 0.11
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTHIK 66
EK +C C K F+ S L H H +
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 30.1 bits (68), Expect = 0.013
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+ + CS C + F ++ +L H +H ++
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 23.2 bits (50), Expect = 5.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
+ + C C + F ++ L H H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.9 bits (69), Expect = 0.055
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRI-HS 37
+ +VC+VC+ FST S+L+ H R H
Sbjct: 113 NPSSYVCNVCNARFSTMSALSEHLRSDHR 141
Score = 30.2 bits (67), Expect = 0.10
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIKVNDD 70
+ C VC RF+ S L H + + +
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.6 bits (68), Expect = 0.063
Identities = 9/45 (20%), Positives = 14/45 (31%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYH 60
K + S HR + GEK Q + + +L
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 24.8 bits (53), Expect = 6.5
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIH 36
EK + L +
Sbjct: 206 EKRLQREKSEQVLDNPEDLRGPIHLS 231
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 28.0 bits (62), Expect = 0.081
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 43 QCQVCGKRFTASSNLYYHRMTHIKVNDDFK 72
C C KRF S +L H H + ++ +
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGEERR 33
Score = 26.0 bits (57), Expect = 0.50
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKP 41
C C K F S L+ H +H
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGE 30
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.9 bits (61), Expect = 0.13
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ + +CQ CGK F SS L H+ H
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALH 35
Score = 27.6 bits (60), Expect = 0.16
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGE 39
C C K F SS L H+ +H+GE
Sbjct: 15 CQECGKIFRHSSLLIEHQALHAGE 38
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 26
Score = 27.0 bits (59), Expect = 0.18
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP+ C+ CGKRF SS L H H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 26.2 bits (57), Expect = 0.43
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIH 36
KP+VC C K F SS L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 0.18
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 39 EKPHQCQV--CGKRFTASSNLYYHRMTHIK 66
+K +C C K F N+ H TH++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 23.7 bits (51), Expect = 5.4
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 10 SEKPHVCSV--CSKGFSTSSSLNTHRRIHSGEK 40
+K C C+K F ++ +H + H ++
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.8 bits (59), Expect = 0.20
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 43 QCQVCGKRFTASSNLYYHRMTHIK 66
C C KRF S +L H + H
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHEN 27
Score = 26.0 bits (57), Expect = 0.41
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEK 40
C C K F S L H +H +K
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 0.23
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
K C C+K F SL H RIH+ EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.1 bits (62), Expect = 0.30
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
H C C++ F S++L TH R K H
Sbjct: 51 HRCLACARYFIDSTNLKTHFR----SKDH 75
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 0.34
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHS 37
++P+ C C K F + L H++ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 0.57
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 12 KPHVCSVCSKGFSTSSSLNTH-RRIHSG 38
K + C +C++ F+ L H ++IHSG
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 22.9 bits (49), Expect = 8.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 40 KPHQCQVCGKRFTASSNLYYH 60
K + C +C + FT L H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 0.71
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
S KP CS+C + S+L H HS EK
Sbjct: 6 SGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.0 bits (59), Expect = 0.82
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 13/35 (37%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCG 48
H+C +C G+ IH GE +C +C
Sbjct: 172 HLCPIC--GY-----------IHKGEDFEKCPICF 193
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 26.1 bits (58), Expect = 1.9
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 26 SSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMT 63
SSS NT R H + P L+Y +T
Sbjct: 58 SSSFNTGRIEHLYKNPQ--AHIEGNM----KLHYGDLT 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.9
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 39 EKPHQCQVCGKRFTASSNLY 58
EK Q + K+ AS LY
Sbjct: 18 EK--Q-AL--KKLQASLKLY 32
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 26.2 bits (57), Expect = 2.0
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 13/35 (37%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCG 48
++C +C G+ E P C VCG
Sbjct: 139 YICPIC--GY-----------TAVDEAPEYCPVCG 160
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 25.5 bits (55), Expect = 2.0
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSG---EKPHQCQVCGKRFTASSNLYYHRMTHIK 66
E + C C+ + H H + C C L H + +
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
Query: 67 VNDDFK 72
++FK
Sbjct: 76 GEENFK 81
Score = 25.5 bits (55), Expect = 2.1
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPHQCQV 46
++ +VC C+ +L+ H + H GE+ + +
Sbjct: 45 VVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 25.1 bits (55), Expect = 2.2
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASS 55
VC+VC F + + K CQ C + S
Sbjct: 43 VCAVCRLPFPPGDRVTFN------GKECMCQKCSLPVSVSG 77
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 26.1 bits (56), Expect = 2.2
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 33 RRIHSGEKPHQCQVCGKRFTASSNLYYH-RMTHIKVNDDFKEILNLEPVSGSNDEKNLNK 91
++ G+K C C ++ ++ HI + + FKE +P K
Sbjct: 804 PKVVEGQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAFKERYTTKPHKKPMQFDGFEK 863
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.8 bits (56), Expect = 2.3
Identities = 7/34 (20%), Positives = 9/34 (26%), Gaps = 7/34 (20%)
Query: 15 VCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCG 48
C C R G+ C +CG
Sbjct: 23 TCPECK-----VYPPKIVERFSEGD--VVCALCG 49
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 24.3 bits (52), Expect = 2.3
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 10 SEKPHVCSV--CSKGFSTSSSLNTHRRIH 36
+KP +C+ C + F+ L H+ H
Sbjct: 3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 23.5 bits (50), Expect = 4.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 39 EKPHQCQV--CGKRFTASSNLYYHRMTH 64
+KP C CG+RFT +L H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.3 bits (52), Expect = 2.3
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHS 37
C +C + F S+L+ H+R+H
Sbjct: 4 CGLCERSFVEKSALSRHQRVHK 25
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction,
transcription; NMR {Drosophila melanogaster} SCOP:
g.37.1.2 PDB: 1y0j_B 2l6z_B
Length = 36
Score = 23.9 bits (51), Expect = 2.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 8 LISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
L+ +C C FS+ S+L H+ + +
Sbjct: 3 LLKPARFMCLPCGIAFSSPSTLEAHQAYYCSHR 35
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 25.5 bits (55), Expect = 3.0
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 12/38 (31%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRF 51
C C F+ T R+ C C K F
Sbjct: 20 PSCKSCGAHFAN-----TARK-------QTCLDCKKNF 45
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 25.6 bits (55), Expect = 3.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTH 32
K C CS+ F TSS +H
Sbjct: 289 EAKGIYCPFCSRWFKTSSVFESH 311
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 320
Score = 25.4 bits (55), Expect = 3.8
Identities = 5/24 (20%), Positives = 13/24 (54%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTAS 54
++R I+ G+ +C + G ++
Sbjct: 268 SYRPIYRGKPVEKCPLSGACYSPE 291
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 24.2 bits (53), Expect = 4.1
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 12/38 (31%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRF 51
C +CSK FS +R+ H C+ CG F
Sbjct: 12 DACMICSKKFSL-----LNRK-------HHCRSCGGVF 37
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 24.9 bits (55), Expect = 4.8
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 26 SSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMT 63
+SS NT R H + PH C +F +L+Y ++
Sbjct: 35 ASSFNTERVDHIYQDPHTCN---PKF----HLHYGDLS 65
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 25.0 bits (55), Expect = 4.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 26 SSSLNTHRRIHSGEKPHQ 43
SS+ NT R H PH
Sbjct: 62 SSNFNTQRINHIYIDPHN 79
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 24.9 bits (55), Expect = 5.0
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 26 SSSLNTHRRIHSGEKPH 42
S + R G +
Sbjct: 37 SGEFASWRLKELGIEND 53
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 25.0 bits (54), Expect = 5.1
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 31 THRRIHSGEKPHQCQVCGKRFTASSN 56
T++ I+ + G ++ +
Sbjct: 277 TYKPIYEDTPSVSDPLTGSKYVITEK 302
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 24.6 bits (53), Expect = 7.1
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 14 HVCSVCSKGFSTSSSLNTHR-RIHSGEKPHQCQVCGKRFTASSNLYYHR 61
S + +++ N H ++ S E+ C+ C + Y
Sbjct: 501 QFEMAISNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRC 549
>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A
{Bacillus phage 0305phi8-36}
Length = 105
Score = 23.9 bits (51), Expect = 8.0
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 47 CGKRFTASSNLYYHRMTHIKVNDDFKEILNLEP-----VSGSNDEKNLNKFNIVKAQM 99
GK+ N Y VN D +++ L ++ +DE LN + VK Q+
Sbjct: 38 LGKKLAIEVNGVYWASKQKNVNKDKRKLSELHSKGYRVLTIEDDE--LNDIDKVKQQI 93
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 22.5 bits (47), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 40 KPHQCQVCGKRFTASSNLYYH 60
K +QCQ C R SSNL H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTH 21
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling,
linkage specificity, deubiquitinating enzyme, Lys63-
linked, anti-oncogene; 2.8A {Homo sapiens}
Length = 374
Score = 24.3 bits (52), Expect = 9.3
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
Query: 4 ILRVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQ-CQVCGKRFTASSNLYYHRM 62
+ L+ + P C +C S K Q C+ C + H+
Sbjct: 194 NITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLHPKRLNHKY 253
Query: 63 THIKVNDDFKEI 74
+ + D +
Sbjct: 254 NPVSLPKDLPDW 265
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 22.7 bits (48), Expect = 9.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 19 CSKGFSTSSSLNTHRRIHSG 38
C + F+ LN H++IH+G
Sbjct: 10 CGRSFNDRRKLNRHKKIHTG 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.392
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,407,311
Number of extensions: 67939
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 417
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)