RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16685
(99 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 56.5 bits (137), Expect = 3e-13
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTH-RRIHSGEKPHQCQV 46
KP++C C KGFS LN H +++H+ E+PH+CQV
Sbjct: 2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 40.0 bits (94), Expect = 8e-07
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYH-RMTH 64
S KP+ CQ CGK F+ +L H + H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 53.9 bits (129), Expect = 4e-12
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+K + C C K F+ S + H +H G +P+ C VCGK+F +L H H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 32.7 bits (74), Expect = 7e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 5 LRVLISEKPHVCSVCSKGFSTSSSLNTHRRIH 36
+ + + +P+ C VC K F L H +IH
Sbjct: 22 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 52.0 bits (125), Expect = 2e-11
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTHIKV 67
R +G KP QC C + F+ S +L HR H+ V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 37.0 bits (86), Expect = 1e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIH 36
KP C C + FS S L HR+ H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 50.7 bits (122), Expect = 5e-11
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 35 IHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
IHSGEKP+ C CGK F+ SS L H+ H
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQRVH 30
Score = 48.8 bits (117), Expect = 2e-10
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
EKP+ C C K FS SS L H+R+H+GE
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQRVHTGE 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 49.6 bits (119), Expect = 1e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
R HSGEKP++C +C RFT S + H +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQK 31
Score = 40.4 bits (95), Expect = 5e-07
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTH-RRIHSGE 39
EKP+ C +C F+ S ++ H + H+
Sbjct: 6 EKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 49.3 bits (118), Expect = 2e-10
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 34 RIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
R H+GEKP+ C C K F L H +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 31
Score = 43.5 bits (103), Expect = 3e-08
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 6 RVLISEKPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
R EKP+ CS C K F L+ H + +
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 48.0 bits (115), Expect = 5e-10
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+ VC VC++ F+ L H R H+ EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 39.9 bits (94), Expect = 7e-07
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
+ C+VC + F +L H +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 47.8 bits (114), Expect = 7e-10
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 32 HRRIHSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
+ ++C CGK F+ SS+L HR TH
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
Score = 40.5 bits (95), Expect = 5e-07
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
+ + C C K FS SS L+ HRR H+GE
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 46.8 bits (112), Expect = 2e-09
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
+KP C +C + FS S L TH R H+G
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 42.2 bits (100), Expect = 8e-08
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
+KP QC++C + F+ S +L H TH
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTH 26
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 45.4 bits (108), Expect = 5e-09
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
K C C K F S L+ H + H +K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 37.7 bits (88), Expect = 5e-06
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
K C C KRF S +L H TH
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTH 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 45.1 bits (107), Expect = 7e-09
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEKPHQCQ 45
C K F+ L H ++HS + + C+
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 29.3 bits (66), Expect = 0.011
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 44 CQVCGKRFTASSNLYYHRMTH 64
CGK F +L H H
Sbjct: 6 EPACGKSFNFKKHLKEHMKLH 26
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 43.8 bits (104), Expect = 2e-08
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGEK 40
+P +C+ C K F+ S L H+R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.2 bits (79), Expect = 1e-04
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 40 KPHQCQV--CGKRFTASSNLYYHRMTH 64
+P C CGKRFT S L H+ TH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 42.4 bits (100), Expect = 9e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 36 HSGEKPHQCQVCGKRFTASSNLYYHRMTH 64
SG++P C++C FT +N H H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 38.6 bits (90), Expect = 3e-06
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
++P VC +C F+T ++ H ++H+
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTDT 33
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 42.3 bits (100), Expect = 1e-07
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGE 39
KPH C+ C K +S +L TH R H+GE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 34.2 bits (79), Expect = 1e-04
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 40 KPHQC--QVCGKRFTASSNLYYHRMTH 64
KPH+C + C K ++ NL H +H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 41.5 bits (98), Expect = 2e-07
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIHSGE 39
++P+ C C K F + L H++ H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 36.9 bits (86), Expect = 1e-05
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 39 EKPHQCQV--CGKRFTASSNLYYHRMTHIK 66
++P+ C C K F + +L H+ +H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 39.9 bits (94), Expect = 7e-07
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHS 37
KP+ C C K FS +S L H+RIH+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 36.8 bits (86), Expect = 1e-05
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP++C CGK F+ +S L H+ H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIH 25
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 39.7 bits (93), Expect = 1e-06
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGE 39
KP C+ C K FS +L TH RIH+G+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 33.1 bits (76), Expect = 4e-04
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 40 KPHQCQV--CGKRFTASSNLYYHRMTH 64
KP QC CGKRF+ NL H H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIH 27
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 39.2 bits (92), Expect = 1e-06
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSG 38
+P+ C V C + FS S+ L H RIH+G
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 33.4 bits (77), Expect = 2e-04
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 40 KPHQC--QVCGKRFTASSNLYYHRMTH 64
+P+ C + C +RF+ S++L H H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIH 27
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 36.4 bits (84), Expect = 2e-05
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 27 SSLNTHRRIHSGEKPHQCQVC--GKRFTASSNLYYHRMTH 64
S++ + + +K +C K F N+ H TH
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTH 43
Score = 35.7 bits (82), Expect = 5e-05
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 11 EKPHVCSVCSKG--FSTSSSLNTHRRIHSGEK 40
+K C F ++ +H + H ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 35.8 bits (83), Expect = 3e-05
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHS 37
+P+VC C+K F+ S++L +H H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 33.5 bits (77), Expect = 2e-04
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 40 KPHQCQV--CGKRFTASSNLYYHRMTH 64
+P+ C C K+F S+NL H +TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTH 27
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 33.9 bits (78), Expect = 2e-04
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEK 40
+ + CS C + F ++ +L H +H ++
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Score = 25.4 bits (56), Expect = 0.27
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTHIK 66
+ + C C + F ++ L H H +
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRR 30
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 32.3 bits (73), Expect = 6e-04
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPH 42
K C +C K F LN H+ HSGEKP+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 26.2 bits (57), Expect = 0.19
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
K C++CGK F +L H+++H
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSH 28
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.3 bits (73), Expect = 7e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGE 39
HVC+ C K F SS L H+ +H+GE
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVHTGE 28
Score = 27.3 bits (60), Expect = 0.054
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 42 HQCQVCGKRFTASSNLYYHRMTH 64
H C CGK F SS L H++ H
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVH 25
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.9 bits (70), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIH 36
EKP C +C + F+ S H +IH
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
Score = 30.6 bits (69), Expect = 0.003
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTHIK 66
EKP C +CG++F S H H++
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHLR 28
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 30.9 bits (69), Expect = 0.002
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHS 37
KP+ C C + SSSLN H RIHS
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIHS 27
Score = 21.6 bits (45), Expect = 6.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 40 KPHQCQVCGKRFTASSNLYYHRMTH 64
KP++C+ C SS+L H H
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRIH 26
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 30.0 bits (67), Expect = 0.005
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 13 PHVCSVCSKGFSTSSSLNTHRRIHSG 38
PH C VC K FS L TH R H+G
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 26.6 bits (58), Expect = 0.10
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 41 PHQCQVCGKRFTASSNLYYHRMTH 64
PH+C+VCGK F+ L H H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 29.6 bits (66), Expect = 0.009
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
EKP+ C VCG RF + YH +H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
Score = 25.4 bits (55), Expect = 0.33
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSG 38
EKP+ C VC F ++ H R H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 36
Score = 28.9 bits (65), Expect = 0.013
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCG 48
+K H+C +C G+ IH GE +C +C
Sbjct: 3 DKFHLCPIC--GY-----------IHKGEDFEKCPICF 27
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 28.2 bits (62), Expect = 0.033
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 37 SGEKPHQCQVCGKRFTASSNLYYHRMT 63
+G KP++C +C KRF + + H +
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHVTS 27
Score = 25.1 bits (54), Expect = 0.46
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 12 KPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFT 52
KP+ C++C+K F S + H S K ++ + T
Sbjct: 4 KPYECNICAKRFMWRDSFHRHVT--SCTKSYEAAKAEQNTT 42
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 27.7 bits (61), Expect = 0.041
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
E+P C +C SS L H R H+G+
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 25.4 bits (55), Expect = 0.31
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 39 EKPHQCQVCGKRFTASSNLYYHRMTH 64
E+P +CQ+C SS L H +H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic
DNA polymerase {Bacillus stearothermophilus, newly
identified strain as yet unnamed [TaxId: 1422]}
Length = 171
Score = 28.6 bits (63), Expect = 0.078
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 38 GEKPHQCQVCGKRFTASSNLYYHRMTHIKVNDDFKEILN 76
E H + G ++ R + F L
Sbjct: 27 EENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLG 65
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 27.4 bits (61), Expect = 0.093
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQV 46
H C C++ F S++L TH R K H+ ++
Sbjct: 16 HRCLACARYFIDSTNLKTHFR----SKDHKKRL 44
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 26.6 bits (59), Expect = 0.11
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 13/38 (34%)
Query: 11 EKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCG 48
+K ++C +C G+ E P C VCG
Sbjct: 3 KKVYICPIC--GY-----------TAVDEAPEYCPVCG 27
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 25.4 bits (55), Expect = 0.28
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGEK 40
C C K F + L H R H+GEK
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 25.0 bits (54), Expect = 0.38
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSGE 39
KP C C KGF++ L H H+GE
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 25.2 bits (55), Expect = 0.40
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 11 EKPHVCSV--CSKGFSTSSSLNTHRRIH 36
+KP +C+ C + F+ L H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 24.1 bits (52), Expect = 1.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 39 EKPHQCQV--CGKRFTASSNLYYHRMTH 64
+KP C CG+RFT +L H+ H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.2 bits (57), Expect = 0.50
Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 13/76 (17%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTA--SSNLYYHRMTHIKV 67
+ + C +C + S C+ C K +R + +
Sbjct: 45 GDGVNRCILCGEQLGMLGS-----------ASVVCEDCKKNVCTKCGVETSNNRPHPVWL 93
Query: 68 NDDFKEILNLEPVSGS 83
E + SG+
Sbjct: 94 CKICLEQREVWKRSGA 109
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.9 bits (51), Expect = 1.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 16 CSVCSKGFSTSSSLNTHRRIH 36
C +C + F S+L+ H+R+H
Sbjct: 3 CGLCERSFVEKSALSRHQRVH 23
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 23.7 bits (51), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 40 KPHQCQV--CGKRFTASSNLYYHRMTH 64
KP+ C++ C KR+T S+L H T
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTV 27
Score = 22.5 bits (48), Expect = 3.5
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 12 KPHVCSV--CSKGFSTSSSLNTHRRIHSG 38
KP+VC + C+K ++ SSL H + G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.5 bits (50), Expect = 1.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 10 SEKPHVCSVCSKGFSTSSSLNTHRRIHSGE 39
SE+ CSVC + F L H H+GE
Sbjct: 1 SEQVFTCSVCQETFRRRMELRLHMVSHTGE 30
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.6 bits (50), Expect = 1.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 40 KPHQCQVCGKRFTASSNLYYH 60
K +QCQ C R SSNL H
Sbjct: 1 KTYQCQYCEFRSADSSNLKTH 21
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.8 bits (48), Expect = 2.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 13 PHVCSVCSKGFSTSSSLNTHRRIH 36
P CS CS S+ ++L H RIH
Sbjct: 2 PEKCSECSYSCSSKAALRIHERIH 25
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.5 bits (48), Expect = 2.9
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEK 40
++C C S L H R H+ +
Sbjct: 2 YICEECGIRAKKPSMLKKHIRTHTDVR 28
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 22.5 bits (48), Expect = 3.5
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 13 PHVCSVCSKGFSTSSSLNTH-RRIHSG 38
P+ C +C++ F+ L H ++IHSG
Sbjct: 1 PYPCGLCNRAFTRRDLLIRHAQKIHSG 27
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 21.9 bits (46), Expect = 5.7
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 41 PHQCQVCGKRFTASSNLYYH 60
P +C CGK + NL H
Sbjct: 1 PFECPKCGKCYFRKENLLEH 20
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 22.0 bits (47), Expect = 6.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 16 CSVCSKGFSTSSSLNTHRRIHSGE 39
CS + F L H R H+GE
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTGE 33
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 22.7 bits (48), Expect = 6.4
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 12/38 (31%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRF 51
C +CSK FS + + H C+ CG F
Sbjct: 6 DACMICSKKFSLLN------------RKHHCRSCGGVF 31
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 22.3 bits (47), Expect = 7.7
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 12/41 (29%)
Query: 14 HVCSVCSKGFSTSSSLNTHRRIHSGEKPHQCQVCGKRFTAS 54
C C KGFS + + H C+ CG F A
Sbjct: 9 QNCMACGKGFSVT------------VRRHHCRQCGNIFCAE 37
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 126
Score = 23.0 bits (49), Expect = 8.0
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 4 ILRVLISEKPHVCSVCSKG 22
+ L+ C C++
Sbjct: 86 RISQLLDIHEFKCGPCNRR 104
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 22.8 bits (49), Expect = 9.5
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 56 NLYYHRMTHIKVNDDFKEI 74
NL+Y+R HI+V +F+ +
Sbjct: 90 NLHYNRNNHIEVPQNFRFV 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.132 0.392
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 356,772
Number of extensions: 14542
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 113
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)