Query psy16691
Match_columns 94
No_of_seqs 124 out of 1063
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 19:31:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00431 CUB: CUB domain CUB d 99.9 9.3E-23 2E-27 114.8 8.5 82 11-92 1-84 (110)
2 cd00041 CUB CUB domain; extrac 99.9 4.5E-22 9.8E-27 112.4 9.7 82 11-92 1-85 (113)
3 smart00042 CUB Domain first fo 99.9 7.5E-21 1.6E-25 106.0 8.6 72 20-91 1-74 (102)
4 KOG4586|consensus 99.6 3.3E-15 7.2E-20 85.6 5.7 76 17-92 47-125 (156)
5 KOG4292|consensus 99.3 7.9E-12 1.7E-16 84.4 8.5 74 5-78 286-359 (454)
6 KOG4292|consensus 98.5 6.3E-07 1.4E-11 61.2 6.4 67 10-76 168-236 (454)
7 PF02408 CUB_2: CUB-like domai 96.1 0.034 7.4E-07 31.9 5.8 41 30-76 37-77 (120)
8 PF05428 CRF-BP: Corticotropin 91.5 1.2 2.5E-05 29.8 6.0 53 16-75 64-116 (311)
9 PF05428 CRF-BP: Corticotropin 79.2 17 0.00036 24.5 6.9 77 6-90 178-271 (311)
10 smart00166 UBX Domain present 53.2 32 0.0007 17.9 3.5 21 35-55 3-23 (80)
11 KOG2689|consensus 44.2 52 0.0011 22.0 3.8 22 34-55 208-229 (290)
12 PF13157 DUF3992: Protein of u 43.5 57 0.0012 18.0 3.6 36 39-84 54-89 (92)
13 PF13978 DUF4223: Protein of u 42.1 13 0.00028 18.2 0.7 9 62-70 29-37 (56)
14 PF06473 FGF-BP1: FGF binding 39.1 63 0.0014 20.9 3.6 22 34-55 51-73 (231)
15 cd01767 UBX UBX (ubiquitin reg 36.2 65 0.0014 16.5 3.2 20 36-55 2-21 (77)
16 cd01770 p47_UBX p47-like ubiqu 34.3 75 0.0016 16.7 3.2 20 36-55 4-23 (79)
17 PF01186 Lysyl_oxidase: Lysyl 32.9 27 0.00059 22.2 1.2 34 21-54 133-169 (205)
18 PF00789 UBX: UBX domain; Int 32.5 78 0.0017 16.3 3.3 21 35-55 5-25 (82)
19 cd01772 SAKS1_UBX SAKS1-like U 31.0 86 0.0019 16.3 3.3 20 36-55 4-23 (79)
20 PF05015 Plasmid_killer: Plasm 26.1 91 0.002 16.9 2.4 26 31-56 57-82 (93)
21 KOG4457|consensus 26.0 17 0.00037 22.5 -0.5 20 35-54 114-133 (202)
22 PF09240 IL6Ra-bind: Interleuk 24.3 41 0.00088 18.2 0.8 33 33-65 13-47 (99)
23 PF05575 V_cholerae_RfbT: Vibr 24.2 45 0.00099 20.9 1.1 30 55-87 64-97 (286)
24 PF10974 DUF2804: Protein of u 22.2 1.6E+02 0.0035 19.9 3.5 23 36-59 264-286 (333)
25 cd01773 Faf1_like1_UBX Faf1 ik 22.0 1.5E+02 0.0032 16.0 3.5 22 34-55 3-24 (82)
26 PF11454 DUF3016: Protein of u 20.9 1.3E+02 0.0029 17.9 2.6 19 43-61 47-65 (141)
27 PF02843 GARS_C: Phosphoribosy 20.9 64 0.0014 17.5 1.2 14 21-34 6-19 (93)
No 1
>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork. ; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....
Probab=99.89 E-value=9.3e-23 Score=114.81 Aligned_cols=82 Identities=38% Similarity=0.680 Sum_probs=70.9
Q ss_pred CCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC--CeecCCCCc
Q psy16691 11 ANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP--PTRLCGNHH 88 (94)
Q Consensus 11 C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG~~~ 88 (94)
|++.++...|.|.||+||..|+.+..|.|.|.++++++|.|+|..|+++....|..|+|+|++|..... ++++||...
T Consensus 1 Cg~~~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~~~~I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~ 80 (110)
T PF00431_consen 1 CGGRLTNNSGIISSPNYPSNYPSNSDCTWTITAPPGHRIRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSP 80 (110)
T ss_dssp SEEEECSSEEEEESTTTTS-SSSSEEEEEEEE-STTEEEEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSC
T ss_pred CcCEEECCeEEEECCCCCCCCCCCCcEeEEEEecccceeeeccccccceeeeeecccceeEEeeccccceeeeeccCCcC
Confidence 889999999999999999999999999999999999999999999999988889999999999987653 679999776
Q ss_pred CCCC
Q psy16691 89 ISAL 92 (94)
Q Consensus 89 p~~~ 92 (94)
|..+
T Consensus 81 ~~~i 84 (110)
T PF00431_consen 81 PPSI 84 (110)
T ss_dssp CEEE
T ss_pred CccE
Confidence 6554
No 2
>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Probab=99.88 E-value=4.5e-22 Score=112.38 Aligned_cols=82 Identities=39% Similarity=0.707 Sum_probs=74.3
Q ss_pred CCcEEeCC-eeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCC--CCCeecCCCC
Q psy16691 11 ANTSLTGT-EGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASV--TPPTRLCGNH 87 (94)
Q Consensus 11 C~~~~~~~-~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~--~~~~~~cG~~ 87 (94)
|++.+... .|.|.||+||..|+++..|.|.|+++++++|.|.|.+|+|+....|..|+|+|+++... ..++++||..
T Consensus 1 C~~~~~~~~~g~i~Sp~~p~~~~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~ 80 (113)
T cd00041 1 CGGTLTASTSGTISSPNYPNNYPNNLNCVWTIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGST 80 (113)
T ss_pred CCCEEccCCCeEEECCCCCCCCCCCCcEEEEEEcCCCCEEEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCC
Confidence 88888888 99999999999999999999999999999999999999999888999999999999764 3478999998
Q ss_pred cCCCC
Q psy16691 88 HISAL 92 (94)
Q Consensus 88 ~p~~~ 92 (94)
.|..+
T Consensus 81 ~~~~~ 85 (113)
T cd00041 81 LPPPI 85 (113)
T ss_pred CCCCE
Confidence 86554
No 3
>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein. This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.
Probab=99.85 E-value=7.5e-21 Score=106.03 Aligned_cols=72 Identities=46% Similarity=0.777 Sum_probs=64.3
Q ss_pred eeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCC--CCCeecCCCCcCCC
Q psy16691 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASV--TPPTRLCGNHHISA 91 (94)
Q Consensus 20 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~--~~~~~~cG~~~p~~ 91 (94)
|.|.||+||..|+.+..|.|.|+++++++|.|.|..|+|+....|..|+|+|++|... ..++++||...|+.
T Consensus 1 G~i~Sp~yP~~y~~~~~C~w~i~~~~g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~ 74 (102)
T smart00042 1 GTITSPNYPQSYPNNLDCVWTIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPP 74 (102)
T ss_pred CEEeCCCCCcCCCCCCcEEEEEECCCCeEEEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCC
Confidence 6899999999999999999999999999999999999999888899999999998752 23579999886653
No 4
>KOG4586|consensus
Probab=99.59 E-value=3.3e-15 Score=85.62 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=68.2
Q ss_pred CCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeE-eeeCCCCCCCCcEEEEEeCCCCCC--CeecCCCCcCCCC
Q psy16691 17 GTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR-LDLEPQSECLYDYVEMYHAASVTP--PTRLCGNHHISAL 92 (94)
Q Consensus 17 ~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG~~~p~~~ 92 (94)
...+.+.||+||..|+++..|...|.+..-+-|.+.|.+ |.+|++-+|..|.+++.||.-+-+ +++|||...|+.+
T Consensus 47 ~n~~Iftspn~ps~ypp~r~cv~vi~~~p~~~ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~I 125 (156)
T KOG4586|consen 47 QNFNIFTSPNFPSRYPPNRDCVRVIHSRPQHDVEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEI 125 (156)
T ss_pred cccceEecCCccccCCCCcceEEeEecccccceEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhh
Confidence 345788999999999999999999999998889999987 899999999999999999987765 6899999998854
No 5
>KOG4292|consensus
Probab=99.34 E-value=7.9e-12 Score=84.43 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=66.9
Q ss_pred CCCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCC
Q psy16691 5 EKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT 78 (94)
Q Consensus 5 ~~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~ 78 (94)
....+.|+.+++...|.+.||+||..|+.+..|+|.+.++.++.+.+.|+.|-++.+..|.+||++...+....
T Consensus 286 ~~~~~~C~~~~~~~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~g~~l~v~fh~~~~~~s~~C~~d~l~~r~~~~~~ 359 (454)
T KOG4292|consen 286 TYQISDCNRTYHGKFGNLTSPGYPQNYPNNLDCTTHLTVPGGHTLVVFFHEFSIENSRECINDYLVLRNGNSGN 359 (454)
T ss_pred CccccccccceecceeEEcCCCCcccCCCCCcceEEEEcCCCCEEEEEeecccchhhhhhccceEEeccCCCCC
Confidence 34667899999989999999999999999999999999999999999999999999999999988888776553
No 6
>KOG4292|consensus
Probab=98.47 E-value=6.3e-07 Score=61.15 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=57.7
Q ss_pred CCCcEEeC-CeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC-CCCCCcEEEEEeCCC
Q psy16691 10 NANTSLTG-TEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ-SECLYDYVEMYHAAS 76 (94)
Q Consensus 10 ~C~~~~~~-~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~-~~C~~d~l~i~~g~~ 76 (94)
.|+.+++. .+|.+.+|++|..|....-|.|.+.+++++++.+++..+++.+. ..|...+|.|+++.+
T Consensus 168 ~~~~t~~~q~sg~~~~~~~p~~~v~s~~c~Wli~t~p~q~l~irv~~~~~~pt~n~c~s~~L~i~m~~~ 236 (454)
T KOG4292|consen 168 TYNITFTTQNSGSIPSPNDPDTYVASSICNWLIDTPPGQRLYIRVVHLHLAPTINECESASLTIFMSYK 236 (454)
T ss_pred ccceeecCcccccccCCCCcccccccchhhhhhhcCCCcceeEEEEeccCCcccccccceeEEEEeccC
Confidence 45556654 44999999999999999999999999999999999999998766 679999999999753
No 7
>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins. The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.
Probab=96.13 E-value=0.034 Score=31.87 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=30.8
Q ss_pred CCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCC
Q psy16691 30 NYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAAS 76 (94)
Q Consensus 30 ~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~ 76 (94)
.++.+.+|.|.|.+|.|.-++|.+.. ++.. .|.+.|.|...
T Consensus 37 ~~p~n~~C~y~i~iP~G~~a~v~~~~-~~~~-----~d~i~v~D~~g 77 (120)
T PF02408_consen 37 QFPANQNCTYQINIPKGYYAKVTLSA-NLND-----NDSITVTDSNG 77 (120)
T ss_pred ccCCCCceEEEEEcCCceEEEEEEEE-ecCC-----CCEEEEEecCC
Confidence 36788899999999999988887643 2222 48888888543
No 8
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=91.46 E-value=1.2 Score=29.77 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=39.3
Q ss_pred eCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCC
Q psy16691 16 TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAA 75 (94)
Q Consensus 16 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~ 75 (94)
.+.+|.++.-. -.+...|--.+.+.+++.|.++|..++++-.. .|+|.++||.
T Consensus 64 ~s~~G~f~f~a----~~pq~~Ca~y~iaePd~~IeI~~~~vdidC~~---G~ll~v~DGW 116 (311)
T PF05428_consen 64 LSEEGQFTFTA----SRPQLVCAAYFIAEPDELIEIEFDHVDIDCEG---GDLLKVFDGW 116 (311)
T ss_pred eccCceEEEec----CCCCceeEEEEEeCCCeEEEEEEEEeeccCCC---CCEEEEEece
Confidence 44556554211 14577898888888889999999999997432 6999999985
No 9
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=79.16 E-value=17 Score=24.53 Aligned_cols=77 Identities=26% Similarity=0.324 Sum_probs=44.5
Q ss_pred CCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCC----------CCCCC--CcEEEEEe
Q psy16691 6 KNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEP----------QSECL--YDYVEMYH 73 (94)
Q Consensus 6 ~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~----------~~~C~--~d~l~i~~ 73 (94)
.++.-|+-....+.|.++-= +|....+|+..+.-|. .+...++.|.. ...|. .|||+|-.
T Consensus 178 ~Np~PCNVisq~~~g~fTl~----n~gq~rNCSfs~iyP~----~i~i~~L~lG~~~~l~~~~~~~~~C~~~~D~Vei~G 249 (311)
T PF05428_consen 178 KNPFPCNVISQSPEGRFTLR----NPGQRRNCSFSIIYPV----VISISDLSLGHTNGLELQRGVIHGCQGSGDFVEIGG 249 (311)
T ss_pred CCCCCceEeccCCCcceEEE----CCCcccCcEEEEEeee----EEEEEEEecccccCcccccccccCCCCcCCeEEECC
Confidence 34555766655555555432 3456678999888664 33444555543 23454 59999976
Q ss_pred CCCCCC-----CeecCCCCcCC
Q psy16691 74 AASVTP-----PTRLCGNHHIS 90 (94)
Q Consensus 74 g~~~~~-----~~~~cG~~~p~ 90 (94)
|..-.. ...+||....+
T Consensus 250 g~GlD~skM~~~~~lCg~~~~p 271 (311)
T PF05428_consen 250 GNGLDTSKMFPVADLCGSFSGP 271 (311)
T ss_pred cCCcCcccCEEhhHhhccCCCC
Confidence 543221 34678765543
No 10
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=53.16 E-value=32 Score=17.89 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.1
Q ss_pred CceEEEEEcCCCCeEEEEEeE
Q psy16691 35 LDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 35 ~~C~w~i~~~~~~~i~l~f~~ 55 (94)
..|.-.|+.|+|.++.-.|..
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~ 23 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPS 23 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCC
Confidence 468899999999999998874
No 11
>KOG2689|consensus
Probab=44.17 E-value=52 Score=22.01 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.4
Q ss_pred CCceEEEEEcCCCCeEEEEEeE
Q psy16691 34 NLDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 34 ~~~C~w~i~~~~~~~i~l~f~~ 55 (94)
...|+..|+.++|+.+..+|..
T Consensus 208 ys~crlQiRl~DG~Tl~~tF~a 229 (290)
T KOG2689|consen 208 YSQCRLQIRLPDGQTLTQTFNA 229 (290)
T ss_pred ccceEEEEEcCCCCeeeeecCc
Confidence 4679999999999999998864
No 12
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=43.48 E-value=57 Score=17.98 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=20.3
Q ss_pred EEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecC
Q psy16691 39 VTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLC 84 (94)
Q Consensus 39 w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~c 84 (94)
-.+.+.+|..+.+++.+|+ -+.|.+.......++||
T Consensus 54 ~tftV~pG~S~S~T~~~~~----------sI~I~~~~~g~~~G~~C 89 (92)
T PF13157_consen 54 NTFTVQPGNSRSFTVRDFQ----------SIQIVTTPTGTIEGEFC 89 (92)
T ss_pred eEEEECCCceEEEEeccce----------EEEEEeCCCcEEEEEEE
Confidence 3455666666666655554 55565533333457777
No 13
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=42.13 E-value=13 Score=18.23 Aligned_cols=9 Identities=44% Similarity=1.099 Sum_probs=7.4
Q ss_pred CCCCCcEEE
Q psy16691 62 SECLYDYVE 70 (94)
Q Consensus 62 ~~C~~d~l~ 70 (94)
.+|.+|||-
T Consensus 29 knCsYDYll 37 (56)
T PF13978_consen 29 KNCSYDYLL 37 (56)
T ss_pred CCCcceeee
Confidence 579999984
No 14
>PF06473 FGF-BP1: FGF binding protein 1 (FGF-BP1); InterPro: IPR010510 This family consists of several mammalian FGF binding protein 1. Fibroblast growth factors (FGFs) play important roles during foetal and embryonic development []. Fibroblast growth factor-binding protein (FGF-BP) 1 is a secreted protein that can bind fibroblast growth factors (FGFs) 1 and 2 [].
Probab=39.07 E-value=63 Score=20.93 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=15.0
Q ss_pred CCceEEEE-EcCCCCeEEEEEeE
Q psy16691 34 NLDYWVTI-RGPEETRIVLAFLR 55 (94)
Q Consensus 34 ~~~C~w~i-~~~~~~~i~l~f~~ 55 (94)
...|+|.+ ...++-.+.|+...
T Consensus 51 ~~~Ctw~v~~~~~~~~L~V~C~~ 73 (231)
T PF06473_consen 51 QHACTWQVTTGEDGVELRVECKN 73 (231)
T ss_pred CCceEEEeccCCCceEEEEEEcC
Confidence 56899999 55555556666653
No 15
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=36.23 E-value=65 Score=16.53 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCeEEEEEeE
Q psy16691 36 DYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 36 ~C~w~i~~~~~~~i~l~f~~ 55 (94)
.|.-.|+.|+|.++.-.|..
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~ 21 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNS 21 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCC
Confidence 47778999999999988864
No 16
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=34.32 E-value=75 Score=16.69 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.1
Q ss_pred ceEEEEEcCCCCeEEEEEeE
Q psy16691 36 DYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 36 ~C~w~i~~~~~~~i~l~f~~ 55 (94)
.|.-.|+.|+|.++...|..
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~ 23 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNS 23 (79)
T ss_pred eeEEEEECCCCCEEEEEeCC
Confidence 57888999999999988764
No 17
>PF01186 Lysyl_oxidase: Lysyl oxidase ; InterPro: IPR001695 Lysyl oxidase (1.4.3.13 from EC) (LOX) [] is an extracellular copper-dependent enzyme that catalyses the oxidative deamination of peptidyl lysine residues in precursors of various collagens and elastins, yielding alpha-aminoadipic-delta-semialdehyde. The deaminated lysines are then able to form semialdehyde cross-links, resulting in the formation of insoluble collagen and elastin fibres in the extracellular matrix []. The active site of LOX resides towards the C terminus: this region also binds a single copper atom in an octahedral coordination complex involving at least 3 His residues []. Four histidine residues are clustered in a central region of the enzyme. This region is thought to be involved in cooper-binding and is called the 'copper-talon' [].; GO: 0005507 copper ion binding, 0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor, 0055114 oxidation-reduction process
Probab=32.90 E-value=27 Score=22.19 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=24.9
Q ss_pred eEECCCCCcCCCCCCceEEEEE--cCC-CCeEEEEEe
Q psy16691 21 FITSPAFPSNYANNLDYWVTIR--GPE-ETRIVLAFL 54 (94)
Q Consensus 21 ~i~SP~~p~~y~~~~~C~w~i~--~~~-~~~i~l~f~ 54 (94)
.-.||++-+.|.....|+|.=. +|+ .+.+++...
T Consensus 133 QGIS~Gc~DtY~~~idcQWiDITdvp~G~Y~l~V~vN 169 (205)
T PF01186_consen 133 QGISPGCGDTYRHDIDCQWIDITDVPPGTYILQVTVN 169 (205)
T ss_pred CcccCCccccccCCCCccceeecCCCCccEEEEEecC
Confidence 3468999999999999999654 344 455666554
No 18
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=32.54 E-value=78 Score=16.31 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=17.8
Q ss_pred CceEEEEEcCCCCeEEEEEeE
Q psy16691 35 LDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 35 ~~C~w~i~~~~~~~i~l~f~~ 55 (94)
..|.-.|+.|+|.++...|..
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~ 25 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPK 25 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEET
T ss_pred CEEEEEEECCCCCEEEEEECC
Confidence 458889999999999998874
No 19
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=30.99 E-value=86 Score=16.34 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=17.1
Q ss_pred ceEEEEEcCCCCeEEEEEeE
Q psy16691 36 DYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 36 ~C~w~i~~~~~~~i~l~f~~ 55 (94)
.|.-.|+.|+|.++.-.|..
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~ 23 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKA 23 (79)
T ss_pred EEEEEEECCCCCEEEEEeCC
Confidence 57888999999999988874
No 20
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=26.13 E-value=91 Score=16.85 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=19.6
Q ss_pred CCCCCceEEEEEcCCCCeEEEEEeEe
Q psy16691 31 YANNLDYWVTIRGPEETRIVLAFLRL 56 (94)
Q Consensus 31 y~~~~~C~w~i~~~~~~~i~l~f~~f 56 (94)
...+..-.|.|.+....||.+.|.+=
T Consensus 57 L~G~~~g~~Si~i~~~~RliF~~~~~ 82 (93)
T PF05015_consen 57 LKGDRKGQWSIRINGNWRLIFRFEDG 82 (93)
T ss_pred ccCCCCCcEEEEeCCCEEEEEEEeCC
Confidence 34455678999999998888877543
No 21
>KOG4457|consensus
Probab=25.98 E-value=17 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=12.7
Q ss_pred CceEEEEEcCCCCeEEEEEe
Q psy16691 35 LDYWVTIRGPEETRIVLAFL 54 (94)
Q Consensus 35 ~~C~w~i~~~~~~~i~l~f~ 54 (94)
..|.|++..-.-.++.+.+.
T Consensus 114 vr~RWRv~gvsv~~~f~~~~ 133 (202)
T KOG4457|consen 114 VRCRWRVKGVSVTRIFMNPR 133 (202)
T ss_pred EEEEEEEecceEeeeeechH
Confidence 57999998766444444433
No 22
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=24.26 E-value=41 Score=18.23 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=17.0
Q ss_pred CCCceEEEEEcCC--CCeEEEEEeEeeeCCCCCCC
Q psy16691 33 NNLDYWVTIRGPE--ETRIVLAFLRLDLEPQSECL 65 (94)
Q Consensus 33 ~~~~C~w~i~~~~--~~~i~l~f~~f~l~~~~~C~ 65 (94)
....|+|...... +-.-.|......++....|.
T Consensus 13 ~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~ 47 (99)
T PF09240_consen 13 EYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECP 47 (99)
T ss_dssp TEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEES
T ss_pred EEEEEEECCCCCCCCcccEEEEEEcCCCCccccCC
Confidence 3467999875443 32333444444444444564
No 23
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=24.21 E-value=45 Score=20.86 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=19.0
Q ss_pred EeeeCCC----CCCCCcEEEEEeCCCCCCCeecCCCC
Q psy16691 55 RLDLEPQ----SECLYDYVEMYHAASVTPPTRLCGNH 87 (94)
Q Consensus 55 ~f~l~~~----~~C~~d~l~i~~g~~~~~~~~~cG~~ 87 (94)
.|+|... ..|..|...|--|.. .+.|||..
T Consensus 64 nfdlgmrhwivnhckhdttyidigan---vgtfcgia 97 (286)
T PF05575_consen 64 NFDLGMRHWIVNHCKHDTTYIDIGAN---VGTFCGIA 97 (286)
T ss_pred CCccchhHhhhhhccCCceEEEeccc---cccchhhh
Confidence 3555433 578888766655443 58899864
No 24
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=22.20 E-value=1.6e+02 Score=19.91 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=17.6
Q ss_pred ceEEEEEcCCCCeEEEEEeEeeeC
Q psy16691 36 DYWVTIRGPEETRIVLAFLRLDLE 59 (94)
Q Consensus 36 ~C~w~i~~~~~~~i~l~f~~f~l~ 59 (94)
.--|.|+..++ +|-|+|+.....
T Consensus 264 ~~pW~i~s~dg-~vdL~FtP~~~r 286 (333)
T PF10974_consen 264 MKPWRITSDDG-RVDLTFTPIFDR 286 (333)
T ss_pred CCCeEEEcCCC-eEEEEEEEeeee
Confidence 34699998854 899999987653
No 25
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=22.02 E-value=1.5e+02 Score=15.95 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=18.2
Q ss_pred CCceEEEEEcCCCCeEEEEEeE
Q psy16691 34 NLDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 34 ~~~C~w~i~~~~~~~i~l~f~~ 55 (94)
...|.-.|+.|.|.++.-.|..
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~ 24 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPE 24 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCC
Confidence 3458889999999999998874
No 26
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=20.92 E-value=1.3e+02 Score=17.94 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=16.5
Q ss_pred cCCCCeEEEEEeEeeeCCC
Q psy16691 43 GPEETRIVLAFLRLDLEPQ 61 (94)
Q Consensus 43 ~~~~~~i~l~f~~f~l~~~ 61 (94)
.|+|+++.+++++.+|.+.
T Consensus 47 Lp~gq~L~v~VtDvDLAG~ 65 (141)
T PF11454_consen 47 LPPGQTLEVTVTDVDLAGD 65 (141)
T ss_pred CCCCCEEEEEEEecccCcc
Confidence 5899999999999999654
No 27
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=20.87 E-value=64 Score=17.53 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=9.1
Q ss_pred eEECCCCCcCCCCC
Q psy16691 21 FITSPAFPSNYANN 34 (94)
Q Consensus 21 ~i~SP~~p~~y~~~ 34 (94)
.+.|++||..|...
T Consensus 6 v~as~GYP~~~~~g 19 (93)
T PF02843_consen 6 VLASKGYPGSYEKG 19 (93)
T ss_dssp EEEETTTTSS--SS
T ss_pred EEeCCCcCCCCCCC
Confidence 45789999887653
Done!