Query psy16691
Match_columns 94
No_of_seqs 124 out of 1063
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 19:31:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wno_A Tumor necrosis factor-i 99.9 5.2E-27 1.8E-31 138.8 12.0 87 7-93 3-91 (149)
2 3poj_A Mannan-binding lectin s 99.9 6.3E-26 2.2E-30 128.7 7.6 83 9-93 2-88 (115)
3 2qqm_A Neuropilin-1; VEGF rece 99.9 1.3E-23 4.5E-28 141.9 9.7 85 8-92 8-100 (450)
4 2qqo_A Neuropilin-2; VEGF rece 99.9 2.6E-23 8.7E-28 140.8 11.2 86 7-92 4-97 (460)
5 1szb_A Mannose binding lectin- 99.9 2.1E-23 7.3E-28 125.3 9.4 75 12-88 5-79 (170)
6 1nzi_A Complement C1S componen 99.9 1.9E-23 6.4E-28 124.2 7.7 72 16-89 2-73 (159)
7 3kq4_B Cubilin; protein-protei 99.9 4.5E-23 1.5E-27 139.4 7.0 83 11-93 1-83 (457)
8 1spp_A Major seminal plasma gl 99.9 1.6E-22 5.6E-27 113.9 7.4 74 8-91 3-77 (109)
9 1nt0_A MAsp2, mannose-binding 99.9 2.5E-22 8.5E-27 129.0 8.7 82 10-93 164-249 (286)
10 1spp_B Major seminal plasma gl 99.9 1.5E-22 5E-27 115.1 6.1 77 6-92 4-81 (116)
11 1sfp_A ASFP; spermadhesin, bov 99.9 3.2E-22 1.1E-26 113.4 7.4 78 4-91 3-81 (114)
12 3kq4_B Cubilin; protein-protei 99.9 4.9E-22 1.7E-26 134.3 9.4 86 8-93 231-318 (457)
13 4gz9_A Neuropilin-1, A5 protei 99.9 5.9E-22 2E-26 137.3 9.1 86 8-93 126-219 (577)
14 3dem_A Complement factor MAsp- 99.9 5.8E-22 2E-26 126.6 8.4 83 9-93 164-250 (278)
15 3dem_A Complement factor MAsp- 99.9 7.5E-22 2.6E-26 126.1 8.3 76 12-89 2-77 (278)
16 4aqb_A Mannan-binding lectin s 99.9 1.2E-21 4.2E-26 129.0 9.3 75 14-90 4-78 (361)
17 2qqk_A Neuropilin-2; VEGF rece 99.9 2.1E-21 7.3E-26 134.4 10.4 86 8-93 124-217 (579)
18 4gz9_A Neuropilin-1, A5 protei 99.9 1.4E-21 5E-26 135.3 9.2 85 8-93 6-95 (577)
19 1nt0_A MAsp2, mannose-binding 99.9 1.5E-21 5E-26 125.4 8.1 72 14-87 3-74 (286)
20 2qqk_A Neuropilin-2; VEGF rece 99.8 2E-20 6.9E-25 129.5 10.6 85 8-93 3-92 (579)
21 4aqb_A Mannan-binding lectin s 99.8 2.7E-19 9.1E-24 117.8 8.8 83 9-93 165-250 (361)
22 1wj4_A KIAA0794 protein; UBX d 24.3 97 0.0033 17.0 3.6 22 34-55 41-62 (124)
23 3sbt_A PRE-mRNA-splicing facto 23.6 69 0.0024 20.1 2.7 31 20-52 1-31 (260)
24 3qx1_A FAS-associated factor 1 20.7 93 0.0032 15.5 3.6 21 35-55 6-26 (84)
25 2dzk_A UBX domain-containing p 20.2 1.1E+02 0.0038 16.2 3.9 21 35-55 12-32 (109)
26 2co3_A SAFA pilus subunit; adh 20.0 1.3E+02 0.0046 17.0 3.2 38 33-70 61-103 (137)
No 1
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=138.78 Aligned_cols=87 Identities=31% Similarity=0.521 Sum_probs=79.2
Q ss_pred CCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCC--CCeecC
Q psy16691 7 NPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT--PPTRLC 84 (94)
Q Consensus 7 ~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~--~~~~~c 84 (94)
....|++.++...|.|.||+||..|+++..|.|.|+++.+++|+|.|.+|+||....|.+|+|+||||.... .+++||
T Consensus 3 ~~~~Cgg~l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~C 82 (149)
T 2wno_A 3 HAKECGGVFTDPKQIFKSPGFPNEYEDNQICYWHIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYC 82 (149)
T ss_dssp CCSCCCEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCEEEEEEEEEECCCCTTCCSSEEEEESSSSSSSSEEEEEC
T ss_pred CCCCCCCEEECCceEEECCCCCcCCCCCCEEEEEEEECCCCEEEEEEEEEEecCCCCCCCCEEEEecCCCCCcceeeeEc
Confidence 467899999999999999999999999999999999999999999999999998889999999999997654 368999
Q ss_pred CCCcCCCCc
Q psy16691 85 GNHHISALT 93 (94)
Q Consensus 85 G~~~p~~~~ 93 (94)
|...|..++
T Consensus 83 G~~~p~~~~ 91 (149)
T 2wno_A 83 GDELPDDII 91 (149)
T ss_dssp SSSCCCCEE
T ss_pred CCCCCCCEE
Confidence 998887653
No 2
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Probab=99.93 E-value=6.3e-26 Score=128.74 Aligned_cols=83 Identities=28% Similarity=0.484 Sum_probs=72.9
Q ss_pred CCCCcEE-eCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEe-EeeeCCC--CCCCCcEEEEEeCCCCCCCeecC
Q psy16691 9 VNANTSL-TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQ--SECLYDYVEMYHAASVTPPTRLC 84 (94)
Q Consensus 9 ~~C~~~~-~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~--~~C~~d~l~i~~g~~~~~~~~~c 84 (94)
..|++.+ +...|.|.||+||..|+++.+|.|.|.++++++|+|.|. .|+||.. ..|.+|+|+|+||.. .+++||
T Consensus 2 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~i~l~f~d~f~le~~~~~~C~~D~l~i~dg~~--~~~~~C 79 (115)
T 3poj_A 2 VECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGSK--VWGPFC 79 (115)
T ss_dssp -CEEEEEECSSEEEEECTTTTSCCCTTCEEEEEEECCTTCCCEEEECSCCBBCCCSSSSSCSCEEEEEETTE--EEEEEC
T ss_pred eECCCceEcCCCEEEcCCCCCcCCcCCCeEEEEEEcCCCCEEEEEEecceecccCCCCCCCCeEEEEEcCCc--ccccCc
Confidence 4698885 788999999999999999999999999999999999999 5999965 489999999999843 478999
Q ss_pred CCCcCCCCc
Q psy16691 85 GNHHISALT 93 (94)
Q Consensus 85 G~~~p~~~~ 93 (94)
|...|..++
T Consensus 80 G~~~p~~~~ 88 (115)
T 3poj_A 80 GEKSPEPIS 88 (115)
T ss_dssp BSSCCCCEE
T ss_pred CCCCCCCEE
Confidence 998887653
No 3
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.90 E-value=1.3e-23 Score=141.90 Aligned_cols=85 Identities=31% Similarity=0.567 Sum_probs=76.1
Q ss_pred CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCC------CCCCcEEEEEeCCCCC--C
Q psy16691 8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS------ECLYDYVEMYHAASVT--P 79 (94)
Q Consensus 8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~------~C~~d~l~i~~g~~~~--~ 79 (94)
...|++.++...|.|.||+||..||++..|.|.|.++.+++|.|.|.+|+||... .|.+|||+||||.... .
T Consensus 8 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~ 87 (450)
T 2qqm_A 8 GPECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPH 87 (450)
T ss_dssp -CTTCEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCE
T ss_pred CCCCCCeEeCCcEEEeCCCCCcCCCCCCeEEEEEEeCCCCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCCcc
Confidence 4579999999999999999999999999999999999999999999999999764 7999999999997653 3
Q ss_pred CeecCCCCcCCCC
Q psy16691 80 PTRLCGNHHISAL 92 (94)
Q Consensus 80 ~~~~cG~~~p~~~ 92 (94)
+++|||...|+.+
T Consensus 88 ~~~~CG~~~p~~i 100 (450)
T 2qqm_A 88 IGRYCGQKTPGRI 100 (450)
T ss_dssp EEEECTTCCCCEE
T ss_pred ceeecCCcCCCcE
Confidence 6899999888765
No 4
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=140.83 Aligned_cols=86 Identities=31% Similarity=0.612 Sum_probs=74.6
Q ss_pred CCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC------CCCCCcEEEEEeCCCCC--
Q psy16691 7 NPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ------SECLYDYVEMYHAASVT-- 78 (94)
Q Consensus 7 ~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~l~i~~g~~~~-- 78 (94)
....|++.++...|.|.||+||..||++..|.|.|.++++++|.|.|.+|+||.. ..|.+|||+||||....
T Consensus 4 ~~~~Cg~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~ 83 (460)
T 2qqo_A 4 GSEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGP 83 (460)
T ss_dssp ---CCCEEECSSEEEEECTTTTSCCCSSCEEEEEEECCTTCEEEEEEEEEECCCC--------CCSSEEEEESSSTTTSC
T ss_pred CCCCCCCEEeCCceEEeCCCCCCCCCCCCEEEEEEEcCCCCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCCCc
Confidence 3567999999999999999999999999999999999999999999999999975 47999999999997643
Q ss_pred CCeecCCCCcCCCC
Q psy16691 79 PPTRLCGNHHISAL 92 (94)
Q Consensus 79 ~~~~~cG~~~p~~~ 92 (94)
.+++|||...|..+
T Consensus 84 ~~~~~CG~~~p~~i 97 (460)
T 2qqo_A 84 LIGKYCGTKTPSEL 97 (460)
T ss_dssp EEEEECTTCCCCCE
T ss_pred ccceEeCCcCCcCE
Confidence 36899999888765
No 5
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.90 E-value=2.1e-23 Score=125.34 Aligned_cols=75 Identities=32% Similarity=0.530 Sum_probs=68.4
Q ss_pred CcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCc
Q psy16691 12 NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHH 88 (94)
Q Consensus 12 ~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~ 88 (94)
+..+++..|.|.||+||..|+++.+|.|.|+++++++|+|.|.+|+||....|.+|||+||||.. .+++|||...
T Consensus 5 ~~~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg~~--~~~~~CG~~~ 79 (170)
T 1szb_A 5 PKWPEPVFGRLASPGFPGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAK--VLATLCGQES 79 (170)
T ss_dssp CCCCCCCEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEECCCCTTSCSSEEEEESSSS--EEEEECSBTT
T ss_pred cceEcCCCeEEECCCCCcCCcCCCcEEEEEEcCCCCEEEEEEEEEEccCCCCCCCCEEEEEeCCc--cccccCCCCC
Confidence 35568889999999999999999999999999999999999999999998899999999999853 4789999873
No 6
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=99.89 E-value=1.9e-23 Score=124.20 Aligned_cols=72 Identities=32% Similarity=0.536 Sum_probs=64.8
Q ss_pred eCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcC
Q psy16691 16 TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHI 89 (94)
Q Consensus 16 ~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p 89 (94)
++..|.|.||+||..|+++..|.|.|.++.+++|+|.|.+|+||....|.+|+|+||||.. .+++|||...|
T Consensus 2 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~f~le~~~~C~~D~l~i~dg~~--~~~~~CG~~~~ 73 (159)
T 1nzi_A 2 PTMYGEILSPNYPQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDT--EEGRLCGQRSS 73 (159)
T ss_dssp CCSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEC-----CCEEECSEECC
T ss_pred CCCCEEEECCCCccCCCCCCCEEEEEEeCCCCEEEEEEeEEEecCCCCCCCCEEEEEeCCc--hhcccCCCCCC
Confidence 5678999999999999999999999999999999999999999988899999999999863 47899998875
No 7
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.88 E-value=4.5e-23 Score=139.37 Aligned_cols=83 Identities=31% Similarity=0.458 Sum_probs=76.9
Q ss_pred CCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcCC
Q psy16691 11 ANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHIS 90 (94)
Q Consensus 11 C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p~ 90 (94)
|++.+++..|.|.||+||+.|+++..|.|.|.++++++|+|.|.+|+|+...+|.+|||+|+|+.....+++|||...|+
T Consensus 1 CGg~l~~~~G~i~SP~yP~~Y~~~~~C~w~I~~~~g~~i~L~f~~f~le~~~~C~~D~l~i~d~~~~~~l~~~CG~~~p~ 80 (457)
T 3kq4_B 1 CGEILTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLEVYDTDSETSLGRYCGKSIPP 80 (457)
T ss_dssp CCCEECSSEEECCCSSTTSCCCSSCCCEEEEECCSSEEEEECCSCCCCCCCSSCCSSEEEEECTTSSSEEEEECSSCCCS
T ss_pred CCCeEecCCEEEeCCCCCCCCCCCCcEEEEEEcCCCCEEEEEEEeeecccCCCCCccEEEEEcCCCCcccceeCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999889999999999985555578999999887
Q ss_pred CCc
Q psy16691 91 ALT 93 (94)
Q Consensus 91 ~~~ 93 (94)
.++
T Consensus 81 ~~~ 83 (457)
T 3kq4_B 81 SLT 83 (457)
T ss_dssp CEE
T ss_pred cEE
Confidence 653
No 8
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.88 E-value=1.6e-22 Score=113.88 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=65.2
Q ss_pred CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecCCC
Q psy16691 8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLCGN 86 (94)
Q Consensus 8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~cG~ 86 (94)
+..|++.++...|.|.|| |+++.+|.|.|.++++++|.|.|.+|++ +|.+|||+||||..... +++|||.
T Consensus 3 ~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~I~dg~~~~~~~~~~CG~ 73 (109)
T 1spp_A 3 YHACGGRLTDDYGTIFTY-----KGPKTECVWTLQVDPKYKLLVSIPTLNL----TCGKEYVEVLEGAPGSKSLGKFCEG 73 (109)
T ss_dssp ECSSCEEEECSEEEEECC-----CSSCSEEEEEEECCTTSEEEEEEEEEEC----CTTTEEEEEESSSTTSCEEEEESEE
T ss_pred ccCCCCEEeCCcEEEeCC-----CCCCCcEEEEEEcCCCCEEEEEEeeeec----cCCCCEEEEEeCCCCCchhhhhhCC
Confidence 467999999999999998 7789999999999999999999999998 58899999999976433 6899998
Q ss_pred CcCCC
Q psy16691 87 HHISA 91 (94)
Q Consensus 87 ~~p~~ 91 (94)
. |..
T Consensus 74 ~-p~~ 77 (109)
T 1spp_A 74 L-SIL 77 (109)
T ss_dssp E-EEE
T ss_pred C-CCC
Confidence 6 543
No 9
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.87 E-value=2.5e-22 Score=129.03 Aligned_cols=82 Identities=26% Similarity=0.478 Sum_probs=69.8
Q ss_pred CCCcE-EeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEe-EeeeCCC--CCCCCcEEEEEeCCCCCCCeecCC
Q psy16691 10 NANTS-LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQ--SECLYDYVEMYHAASVTPPTRLCG 85 (94)
Q Consensus 10 ~C~~~-~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~-~f~l~~~--~~C~~d~l~i~~g~~~~~~~~~cG 85 (94)
.|++. ++...|.|.||+||..|+++..|.|.|+++.+++|.|.|. .|+||.. ..|.+|+|+|+||. ..+++|||
T Consensus 164 ~Cg~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~f~~~f~le~~~~~~C~~D~l~i~dg~--~~~~~~CG 241 (286)
T 1nt0_A 164 LCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQTDK--REYGPFCG 241 (286)
T ss_dssp CCEEEEECSSSEEEECTTTTSCCCSSCEEEEEEECCSSCEEEEEECSCCBBCCC----C--CEEEEECSS--CEEEEECB
T ss_pred cccCceecCCceEEeCCCCCCCCCCCCEEEEEEECCCceEEEEEEeceEEeccCCCCCCCCcEEEEEeCC--cceEEEcC
Confidence 58877 7888999999999999999999999999999999999997 7999865 68999999999984 34789999
Q ss_pred CCcCCCCc
Q psy16691 86 NHHISALT 93 (94)
Q Consensus 86 ~~~p~~~~ 93 (94)
...|..++
T Consensus 242 ~~~p~~~~ 249 (286)
T 1nt0_A 242 KTLPPRIE 249 (286)
T ss_dssp SSCCCCEE
T ss_pred CCCCCCEE
Confidence 99887653
No 10
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Probab=99.87 E-value=1.5e-22 Score=115.15 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=66.9
Q ss_pred CCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-CeecC
Q psy16691 6 KNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTRLC 84 (94)
Q Consensus 6 ~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~~c 84 (94)
.....|++.++...|.|.|| |+++.+|.|.|.++++++|.|.|.+|+| +|.+|+|+||||..... +++||
T Consensus 4 ~~~~~Cgg~l~~~~G~i~SP-----Yp~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~~~~~~~~C 74 (116)
T 1spp_B 4 NGPDECGRVIKDTSGSISNT-----DRQKNLCTWTILMKPDQKVRMAIPYLNL----ACGKEYVEVFDGLLSGPSYGKLC 74 (116)
T ss_dssp EGGGGTTEEECCSEEEEECC-----SSCCSEEEEEEECCTTCEEEEEEEEEEC----CBTTEEEEEESSSTTSCEEEEES
T ss_pred CCCCCCCCEEeCCceEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeCcc----cCCCCEEEEEcCCCCCccccccc
Confidence 34568999999999999998 7789999999999999999999999999 58899999999976533 68999
Q ss_pred CCCcCCCC
Q psy16691 85 GNHHISAL 92 (94)
Q Consensus 85 G~~~p~~~ 92 (94)
|.. |..+
T Consensus 75 G~~-p~~~ 81 (116)
T 1spp_B 75 AGA-AIVF 81 (116)
T ss_dssp EEE-EEEE
T ss_pred CcC-CCCE
Confidence 987 5443
No 11
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1
Probab=99.87 E-value=3.2e-22 Score=113.38 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=67.0
Q ss_pred CCCCCCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC-Cee
Q psy16691 4 NEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP-PTR 82 (94)
Q Consensus 4 ~~~~~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~-~~~ 82 (94)
.......|++.++...|.|.|| |+++.+|.|.|.++++++|+|.|.+|+| .|.+|||+||||..... +++
T Consensus 3 w~~~~~~Cgg~l~~~~G~i~Sp-----y~~~~~C~w~I~~~~g~~I~l~f~~f~l----~C~~D~l~i~dg~~~~~~~~~ 73 (114)
T 1sfp_A 3 WLPRNTNCGGILKEESGVIATY-----YGPKTNCVWTIQMPPEYHVRVSIQYLQL----NCNKESLEIIDGLPGSPVLGK 73 (114)
T ss_dssp -CCEECSSCEEECCSEEEEECC-----CSSCSEEEEEEECCTTCEEEEEEEEEEC----CTTTEEEEEESSSTTSCEEEE
T ss_pred ccccCCCCCCeEECCcEEEeCC-----CcCCCCEEEEEEeCCCCEEEEEEeeeee----ecCCCEEEEEcCCCCCcceeE
Confidence 3445678999999999999997 7789999999999999999999999998 58899999999976433 689
Q ss_pred cCCCCcCCC
Q psy16691 83 LCGNHHISA 91 (94)
Q Consensus 83 ~cG~~~p~~ 91 (94)
|||.. |..
T Consensus 74 ~CG~~-p~~ 81 (114)
T 1sfp_A 74 ICEGS-LMD 81 (114)
T ss_dssp ESEEE-EEE
T ss_pred ecCcC-CCC
Confidence 99987 544
No 12
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}
Probab=99.87 E-value=4.9e-22 Score=134.30 Aligned_cols=86 Identities=23% Similarity=0.499 Sum_probs=78.8
Q ss_pred CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCC--CeecCC
Q psy16691 8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTP--PTRLCG 85 (94)
Q Consensus 8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~--~~~~cG 85 (94)
...|++.++...|.|.||+||..|+++..|.|.|.++++++|.|.|.+|+|+....|.+|+|+||||..... +++|||
T Consensus 231 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~~~~i~l~f~~f~le~~~~C~~D~l~i~dg~~~~~~~l~~~CG 310 (457)
T 3kq4_B 231 STGCGGNLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCG 310 (457)
T ss_dssp CCCCEECCCSSEEEEECTTTTSCCCSSCEEEEEECCSTTCCEEEEEEECCCCCCTTCCSSEEEEEESSSTTSEEEEEECS
T ss_pred cCCCCCeEccCcceeccCCCCCCCCCCCEEEEEEEeCCCCEEEEEEEeeeecCCCCcCCCEEEEEeCCCCCchhhhhhcC
Confidence 467999999999999999999999999999999999999999999999999998999999999999976544 689999
Q ss_pred CCcCCCCc
Q psy16691 86 NHHISALT 93 (94)
Q Consensus 86 ~~~p~~~~ 93 (94)
...|+.++
T Consensus 311 ~~~p~~i~ 318 (457)
T 3kq4_B 311 DEKPPLIR 318 (457)
T ss_dssp SCCCCCEE
T ss_pred CcCCCCEE
Confidence 99887653
No 13
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.87 E-value=5.9e-22 Score=137.27 Aligned_cols=86 Identities=30% Similarity=0.540 Sum_probs=76.9
Q ss_pred CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCC------CCCCcEEEEEeCCCCCC--
Q psy16691 8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQS------ECLYDYVEMYHAASVTP-- 79 (94)
Q Consensus 8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~------~C~~d~l~i~~g~~~~~-- 79 (94)
...|++.++...|.|.||+||..|+++..|.|.|.++++++|.|.|.+|+||... .|.+|||+||||.....
T Consensus 126 ~~~C~~~~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~~~ 205 (577)
T 4gz9_A 126 GPECSQNYTAPTGVIKSPGFPEKYPNSLECTYIIFAPKMSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPH 205 (577)
T ss_dssp CCEEEEEECSSEEEEECTTTTSCCCSSCEEEEEEECGGGCCEEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTTSCE
T ss_pred CcccceeecCCCccccCCCCCCCCCCCceEEEEEEECCCCEEEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCCCce
Confidence 3469999999999999999999999999999999999999999999999998654 39999999999976543
Q ss_pred CeecCCCCcCCCCc
Q psy16691 80 PTRLCGNHHISALT 93 (94)
Q Consensus 80 ~~~~cG~~~p~~~~ 93 (94)
+++|||...|..++
T Consensus 206 lg~~CG~~~P~~i~ 219 (577)
T 4gz9_A 206 IGRYCGQKTPGRIR 219 (577)
T ss_dssp EEEECSSSCCCCEE
T ss_pred eEEEeCCCCCCCcc
Confidence 68999999988763
No 14
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=126.65 Aligned_cols=83 Identities=28% Similarity=0.510 Sum_probs=72.5
Q ss_pred CCCCcE-EeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeE-eeeCCC--CCCCCcEEEEEeCCCCCCCeecC
Q psy16691 9 VNANTS-LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR-LDLEPQ--SECLYDYVEMYHAASVTPPTRLC 84 (94)
Q Consensus 9 ~~C~~~-~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~--~~C~~d~l~i~~g~~~~~~~~~c 84 (94)
..|++. ++...|.|.||+||..|+++..|.|.|+++.+++|.|.|.+ |+||.. ..|.+|+|+|+||.. .+++||
T Consensus 164 ~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~f~le~~~~~~C~~D~l~i~dg~~--~~~~~C 241 (278)
T 3dem_A 164 VECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK--VLGPFC 241 (278)
T ss_dssp CCCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCCEEEEECSCCBBCCCSSSSSSSCEEEEEETTE--EEEEEC
T ss_pred ccCCCceecCCccceeCCCCCCCCCCcCeEEEEEEeCCCcEEEEEEccccccccCCCCCCCCCEEEEecCCc--cccccc
Confidence 357764 57889999999999999999999999999999999999998 999864 579999999999853 378999
Q ss_pred CCCcCCCCc
Q psy16691 85 GNHHISALT 93 (94)
Q Consensus 85 G~~~p~~~~ 93 (94)
|...|..++
T Consensus 242 G~~~p~~~~ 250 (278)
T 3dem_A 242 GEKAPEPIS 250 (278)
T ss_dssp BSSCCCCEE
T ss_pred CCCCCCCEE
Confidence 999887653
No 15
>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Probab=99.86 E-value=7.5e-22 Score=126.15 Aligned_cols=76 Identities=29% Similarity=0.534 Sum_probs=66.3
Q ss_pred CcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcC
Q psy16691 12 NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHI 89 (94)
Q Consensus 12 ~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p 89 (94)
+..++...|.|.||+||..|+++..|.|.|.++++++|+|.|.+|+||....|.+|+|+||||.. .+++|||...|
T Consensus 2 g~~lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~L~F~~f~le~~~~C~~D~l~v~dg~~--~~~~~CG~~~~ 77 (278)
T 3dem_A 2 TVELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQ--VLATFCGRETT 77 (278)
T ss_dssp -----CCEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEECSSC--EEEEECSBSSS
T ss_pred cceeccCCceEeCCCCCCCCcCCCcEEEEEEECCCCEEEEEEEEEEeCCCCCCCCcEEEEecCCc--ccceEcCCcCC
Confidence 35678899999999999999999999999999999999999999999998899999999999854 37899998764
No 16
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=128.99 Aligned_cols=75 Identities=31% Similarity=0.564 Sum_probs=68.2
Q ss_pred EEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCCcCC
Q psy16691 14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNHHIS 90 (94)
Q Consensus 14 ~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~~p~ 90 (94)
.|++..|.|+||+||+.|+++.+|.|.|.+++|++|+|+|.+|+||....|.+|||+|++|... ++++||...+.
T Consensus 4 ~lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~g~~I~l~F~~f~lE~~~~C~~D~l~i~dg~~~--~~~~cG~~~~~ 78 (361)
T 4aqb_A 4 ELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQV--LATFCGRETTD 78 (361)
T ss_dssp EEESSEEEEECTTTTSCCCSSEEEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEECSSCE--EEEECSBSSSS
T ss_pred EEeCCeEEEeCCCCCCCCCCCCeEEEEEEECCCCEEEEEEeEEEecCCCCCCceEEEEccCCcc--cceeeccccCC
Confidence 5788999999999999999999999999999999999999999999999999999999998543 67888876654
No 17
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.86 E-value=2.1e-21 Score=134.38 Aligned_cols=86 Identities=31% Similarity=0.612 Sum_probs=71.5
Q ss_pred CCCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCC------CCCCCcEEEEEeCCCCCC--
Q psy16691 8 PVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQ------SECLYDYVEMYHAASVTP-- 79 (94)
Q Consensus 8 ~~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~------~~C~~d~l~i~~g~~~~~-- 79 (94)
+..|++.++...|.|.||+||..|+++..|.|.|.++.+++|.|.|.+|+||.. ..|.+|||+||||.....
T Consensus 124 ~~~Cg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~g~~I~l~F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~~~~ 203 (579)
T 2qqk_A 124 SEDCSKNFTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL 203 (579)
T ss_dssp CCCCCCEECCSEEEEECTTTTSCCCSSCEEEEEEECCTTEEEEEEEEEEEC-------------CCEEEEESSSTTTSCE
T ss_pred cccccceeccCCceecCCCCcccCCCCCeEEEEEEcCCCCEEEEEEEEEEeecccccccCCCCCCEEEEEEeCCCCCCce
Confidence 346999999999999999999999999999999999999999999999999864 579999999999976532
Q ss_pred CeecCCCCcCCCCc
Q psy16691 80 PTRLCGNHHISALT 93 (94)
Q Consensus 80 ~~~~cG~~~p~~~~ 93 (94)
+++|||...|..++
T Consensus 204 ~~~~CG~~~p~~i~ 217 (579)
T 2qqk_A 204 IGKYCGTKTPSELR 217 (579)
T ss_dssp EEEECSSSCCCCEE
T ss_pred eEEeCCCCCCCcEE
Confidence 68999999887653
No 18
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.86 E-value=1.4e-21 Score=135.34 Aligned_cols=85 Identities=28% Similarity=0.531 Sum_probs=73.2
Q ss_pred CCCCCcEEeCC-eeeEECCCCCcCCCCCCceEEEEEcCCC-CeEEEEEe-EeeeCCCCCCCCcEEEEEeCCCCCC--Cee
Q psy16691 8 PVNANTSLTGT-EGFITSPAFPSNYANNLDYWVTIRGPEE-TRIVLAFL-RLDLEPQSECLYDYVEMYHAASVTP--PTR 82 (94)
Q Consensus 8 ~~~C~~~~~~~-~g~i~SP~~p~~y~~~~~C~w~i~~~~~-~~i~l~f~-~f~l~~~~~C~~d~l~i~~g~~~~~--~~~ 82 (94)
...||+.++.. .|.|.||+||..|+++..|.|.|++|.+ ++|.|.|. +|+||. .+|.+|||+|+||..... +++
T Consensus 6 ~~~CGg~l~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~~~~~I~L~F~~~f~le~-~~C~~Dyl~I~dG~~~~~~~lg~ 84 (577)
T 4gz9_A 6 SDKCGGTIKIENPGYLTSPGYPHSYHPSEKCEWLIQAPEPYQRIMINFNPHFDLED-RDCKYDYVEVIDGENEGGRLWGK 84 (577)
T ss_dssp -CCSSEEEECSSCEEEECTTTTTCCCSSCEEEEEEECSSTTCCEEEEECSCCBCCC-GGGTSSEEEEEESSSTTSEEEEE
T ss_pred cCCCCCEEEcCCCEEEeCCCCCCCCCCCCeEEEEEEECCCCcEEEEEEEeeeeecC-CCCCccEEEEEeCCCCCCcEEEE
Confidence 45799999865 5999999999999999999999999866 68999997 799985 469999999999976654 689
Q ss_pred cCCCCcCCCCc
Q psy16691 83 LCGNHHISALT 93 (94)
Q Consensus 83 ~cG~~~p~~~~ 93 (94)
|||...|.+++
T Consensus 85 ~CG~~~p~~i~ 95 (577)
T 4gz9_A 85 FCGKIAPSPVV 95 (577)
T ss_dssp ECSSSCCCCEE
T ss_pred ecCCCCCCCEE
Confidence 99999988764
No 19
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1
Probab=99.86 E-value=1.5e-21 Score=125.44 Aligned_cols=72 Identities=31% Similarity=0.526 Sum_probs=65.6
Q ss_pred EEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeEeeeCCCCCCCCcEEEEEeCCCCCCCeecCCCC
Q psy16691 14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRLCGNH 87 (94)
Q Consensus 14 ~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~f~l~~~~~C~~d~l~i~~g~~~~~~~~~cG~~ 87 (94)
.++...|.|.||+||..|+++..|.|.|.++++++|+|.|.+|+||....|.+|||+||||.. .+++|||..
T Consensus 3 ~l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~--~~~~~CG~~ 74 (286)
T 1nt0_A 3 WPEPVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK--VLATLCGQE 74 (286)
T ss_dssp --CCCEEEEECTTTTSCCCSSCCEEEEEECCTTEEEEEEEEEEECCCCGGGCSSEEEEEETTE--EEEEECSSS
T ss_pred cccCCCceEeCCCCCccCcCCCcEEEEEEcCCCCEEEEEEEEEEecCCCCCCCcEEEEECCCe--EeceECCCc
Confidence 467888999999999999999999999999999999999999999988899999999999853 478999986
No 20
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.84 E-value=2e-20 Score=129.54 Aligned_cols=85 Identities=27% Similarity=0.576 Sum_probs=73.4
Q ss_pred CCCCCcEEeC-CeeeEECCCCCcCCCCCCceEEEEEcCC-CCeEEEEEe-EeeeCCCCCCCCcEEEEEeCCCCCC--Cee
Q psy16691 8 PVNANTSLTG-TEGFITSPAFPSNYANNLDYWVTIRGPE-ETRIVLAFL-RLDLEPQSECLYDYVEMYHAASVTP--PTR 82 (94)
Q Consensus 8 ~~~C~~~~~~-~~g~i~SP~~p~~y~~~~~C~w~i~~~~-~~~i~l~f~-~f~l~~~~~C~~d~l~i~~g~~~~~--~~~ 82 (94)
...|++.++. ..|.|.||+||..|+++..|.|.|.++. +++|.|.|. +|+||. ..|.+|||+|+||..... +++
T Consensus 3 ~~~Cgg~~~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~~~~~I~l~F~~~f~le~-~~C~~D~l~i~dg~~~~~~~l~~ 81 (579)
T 2qqk_A 3 DPPCGGRLNSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEK-HDCKYDFIEIRDGDSESADLLGK 81 (579)
T ss_dssp --CCCEEEETTSCEEEECTTTTSCCCSSCCEEEEEECSSTTSEEEEEECSCCBCCC-TTSSSSEEEEEESSSTTSEEEEE
T ss_pred CCCCCCEEEeCCCeEEeCCCCCCCCcCCCEEEEEEEECCCCcEEEEEEeccccccc-CCCCeeEEEEEeCCCCCcceeee
Confidence 3579999986 6799999999999999999999999996 579999999 899986 579999999999976543 689
Q ss_pred cCCCCcCCCCc
Q psy16691 83 LCGNHHISALT 93 (94)
Q Consensus 83 ~cG~~~p~~~~ 93 (94)
|||...|+.++
T Consensus 82 ~CG~~~p~~i~ 92 (579)
T 2qqk_A 82 HCGNIAPPTII 92 (579)
T ss_dssp ECTTSCCCCEE
T ss_pred ECCCCCCCCEE
Confidence 99999887653
No 21
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=117.84 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=72.0
Q ss_pred CCCCcEEeCCeeeEECCCCCcCCCCCCceEEEEEcCCCCeEEEEEeE-eeeCCC--CCCCCcEEEEEeCCCCCCCeecCC
Q psy16691 9 VNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR-LDLEPQ--SECLYDYVEMYHAASVTPPTRLCG 85 (94)
Q Consensus 9 ~~C~~~~~~~~g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~f~~-f~l~~~--~~C~~d~l~i~~g~~~~~~~~~cG 85 (94)
..|+..++...|.|.||+||..|+.+..|.|.|.++.+++|.|.|.+ |+++.. ..|.+|||+|++|.. .+++|||
T Consensus 165 ~~c~~~~~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~g~~i~l~f~~~~~~e~~~~~~C~~D~l~i~dg~~--~~~~~cG 242 (361)
T 4aqb_A 165 ECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPK--VLGPFCG 242 (361)
T ss_dssp CCCCCCBCSSEEEEESTTTTSCCCSSCEEEEEEECCTTCEEEEEECSCCBBCCCSSSSSSSSEEEEEETTE--EEEEECB
T ss_pred ccccceEeCCCcEEecCCCCCCCCCCceeeEEeeeccCcEEEEEEeecccccCCccCccCCCeEEEeeCCe--eEEeeCC
Confidence 45777788999999999999999999999999999999999999987 566643 569999999999853 3789999
Q ss_pred CCcCCCCc
Q psy16691 86 NHHISALT 93 (94)
Q Consensus 86 ~~~p~~~~ 93 (94)
...|..++
T Consensus 243 ~~~p~~~~ 250 (361)
T 4aqb_A 243 EKAPEPIS 250 (361)
T ss_dssp SSCCCCEE
T ss_pred CCCCCCEe
Confidence 99987653
No 22
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=24.27 E-value=97 Score=16.99 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.6
Q ss_pred CCceEEEEEcCCCCeEEEEEeE
Q psy16691 34 NLDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 34 ~~~C~w~i~~~~~~~i~l~f~~ 55 (94)
...|.-.|+.|+|.++.-.|..
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~ 62 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPE 62 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEET
T ss_pred CCcEEEEEECCCCCEEEEEeCC
Confidence 3469999999999999998874
No 23
>3sbt_A PRE-mRNA-splicing factor 8; rnaseh like domain, VHS like domain, U5 snRNP assembly; 1.80A {Saccharomyces cerevisiae} SCOP: c.55.3.14 PDB: 3e66_A 3e9o_A* 3e9p_A
Probab=23.64 E-value=69 Score=20.15 Aligned_cols=31 Identities=13% Similarity=0.333 Sum_probs=24.2
Q ss_pred eeEECCCCCcCCCCCCceEEEEEcCCCCeEEEE
Q psy16691 20 GFITSPAFPSNYANNLDYWVTIRGPEETRIVLA 52 (94)
Q Consensus 20 g~i~SP~~p~~y~~~~~C~w~i~~~~~~~i~l~ 52 (94)
|.+.|.||.+.+.+.. .|.+.-..-+|+.++
T Consensus 1 ~~l~s~ny~eLF~n~~--~wfvDDtnvYrvt~h 31 (260)
T 3sbt_A 1 GAMNSSNYAELFNNDI--KLFVDDTNVYRVTVH 31 (260)
T ss_dssp -CBCTTSGGGGGSSSC--EEEEECTTTSEEEEE
T ss_pred CccccccHHHHhcCce--EEEEeCCcEEEEEEE
Confidence 4567888888887765 899998888888875
No 24
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=20.70 E-value=93 Score=15.48 Aligned_cols=21 Identities=24% Similarity=0.173 Sum_probs=17.4
Q ss_pred CceEEEEEcCCCCeEEEEEeE
Q psy16691 35 LDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 35 ~~C~w~i~~~~~~~i~l~f~~ 55 (94)
..|.-.|+.|+|.++.-.|..
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~ 26 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLA 26 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEET
T ss_pred CeEEEEEECCCCCEEEEEeCC
Confidence 458889999999999888764
No 25
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=20.23 E-value=1.1e+02 Score=16.23 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=18.1
Q ss_pred CceEEEEEcCCCCeEEEEEeE
Q psy16691 35 LDYWVTIRGPEETRIVLAFLR 55 (94)
Q Consensus 35 ~~C~w~i~~~~~~~i~l~f~~ 55 (94)
..|.-.|+.|+|.++.-.|..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~ 32 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPS 32 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECT
T ss_pred CcEEEEEECCCCCEEEEEeCC
Confidence 369999999999999998864
No 26
>2co3_A SAFA pilus subunit; adhesion, pathogenesis, fibril protein, fold complementation; 1.78A {Salmonella typhimurium} SCOP: b.2.3.2 PDB: 3cre_B 3crf_B 2co7_A 3cre_A 3crf_A 2cnz_A 2cny_A 2co1_A 2co2_A 2co4_A 2co6_A
Probab=20.03 E-value=1.3e+02 Score=17.01 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=27.5
Q ss_pred CCCceEEEEEcCC-CCeEEEEEeEeeeCCCC----CCCCcEEE
Q psy16691 33 NNLDYWVTIRGPE-ETRIVLAFLRLDLEPQS----ECLYDYVE 70 (94)
Q Consensus 33 ~~~~C~w~i~~~~-~~~i~l~f~~f~l~~~~----~C~~d~l~ 70 (94)
.+..-.|+|.... |..|.+.|..-.+.... -|..+|+.
T Consensus 61 ~~~g~~W~I~GKN~Gn~I~V~fs~~~~~~~~~~~~~ng~~W~t 103 (137)
T 2co3_A 61 DSTGTAWRVAGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMT 103 (137)
T ss_dssp STTSSEEEEECTTTCCEEEEEECHHHHTTCCEEEEETTEEEEE
T ss_pred cCCCcEEEEEeccCCceEEEEEecccccCCCCccccCCceEEE
Confidence 3456799999986 99999999887775442 25555653
Done!