RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16691
(94 letters)
>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in
proteins mostly known to be involved in development;
not found in prokaryotes, plants and yeast.
Length = 113
Score = 73.2 bits (180), Expect = 1e-18
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 16 TGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
T G I+SP +P+NY NNL+ W TI P RI L F DLE C YDY+E+Y
Sbjct: 7 ASTSGTISSPNYPNNYPNNLNCVW-TIEAPPGYRIRLTFEDFDLESSPNCSYDYLEIYDG 65
Query: 75 ASVTPPT--RLCGNHHISALT 93
S + P R CG+ +
Sbjct: 66 PSTSSPLLGRFCGSTLPPPII 86
>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
morphogenetic protein. This domain is found mostly
among developmentally-regulated proteins. Spermadhesins
contain only this domain.
Length = 102
Score = 69.0 bits (169), Expect = 6e-17
Identities = 35/70 (50%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 20 GFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVT 78
G ITSP +P +Y NNLD W TIR P RI L F DLE C YDYVE+Y S +
Sbjct: 1 GTITSPNYPQSYPNNLDCVW-TIRAPPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSAS 59
Query: 79 PPT--RLCGN 86
P R CG+
Sbjct: 60 SPLLGRFCGS 69
>gnl|CDD|215916 pfam00431, CUB, CUB domain.
Length = 110
Score = 62.7 bits (153), Expect = 2e-14
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMY 72
LT + G ITSP +P++Y N D W TIR P RI L F DLE EC YDYVE+
Sbjct: 5 LTESSGSITSPNYPNSYPPNKDCVW-TIRAPPGYRISLTFQDFDLEDHDECGYDYVEIR 62
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins
destined for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues
that lacks this active site cysteine.
Length = 139
Score = 26.8 bits (60), Expect = 1.4
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Query: 26 AFPSNYANNLDYW-VTIRGPEET 47
AFP + +NL W VTI GPE T
Sbjct: 19 AFPVD--DNLFEWEVTIIGPEGT 39
>gnl|CDD|239165 cd02764, MopB_PHLH, The MopB_PHLH CD includes a group of related
uncharacterized putative hydrogenase-like homologs
(PHLH) of molybdopterin binding (MopB) proteins. This CD
is of the PHLH region homologous to the catalytic
molybdopterin-binding subunit of MopB homologs.
Length = 524
Score = 26.7 bits (59), Expect = 2.1
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 28 PSNYANNLDYWVTIRGPEETRIVLAFLRL 56
+ N D + IR +E L
Sbjct: 243 YTLTGANADVRLAIRPSQEKAFALGLAHK 271
>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane
cofactor binding domain.
Length = 213
Score = 26.1 bits (58), Expect = 2.5
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 14/50 (28%)
Query: 41 IRGPEETR-----------IVLA---FLRLDLEPQSECLYDYVEMYHAAS 76
+RG +TR I+LA RL LE + +M A
Sbjct: 144 LRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQSLSPDDMLPAVG 193
>gnl|CDD|165201 PHA02867, PHA02867, C-type lectin protein; Provisional.
Length = 167
Score = 25.0 bits (54), Expect = 5.5
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 27 FPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLY 66
F S Y YW+ I + + L + CL
Sbjct: 95 FVSRYGKG-SYWIDINQNRKIPGINFSLYYEQGVNDICLL 133
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 24.8 bits (55), Expect = 6.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 32 ANNLDYWVTIRGPEETRIVLAFLRLDLEP 60
A NL++W G EE I A + L P
Sbjct: 91 AENLEFWAAFLGGEELDIAAALEAVGLAP 119
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 25.0 bits (55), Expect = 6.8
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 22 ITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEP 60
+ S P +Y ++ Y+ + G E R L R + P
Sbjct: 68 VRSAGLPVDYPTDIAYFTRLTGYELARFRLPSAREAITP 106
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like
protein. This family contains the lanthionine
synthetase C-like proteins 1 and 2 which are related to
the bacterial lanthionine synthetase components C
(LanC). LANCL1 and LANCL2 (testes-specific adriamycin
sensitivity protein) are thought to be
peptide-modifying enzyme components in eukaryotic
cells. Both proteins are produced in large quantities
in the brain and testes and may have role in the immune
surveillance of these organs.
Length = 343
Score = 24.9 bits (55), Expect = 7.2
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 49 IVLAFLRLD-LEPQSECLYDYVEMYHA---------ASVTPPTRLCGNHHISAL 92
I FL+L + P Y+ + LCGN + A+
Sbjct: 7 IAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAV 60
>gnl|CDD|147531 pfam05393, Hum_adeno_E3A, Human adenovirus early E3A
glycoprotein. This family consists of several early
glycoproteins from human adenoviruses.
Length = 94
Score = 24.6 bits (53), Expect = 7.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 2 MKNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTI 41
M N T LT T AF +N+AN +W +I
Sbjct: 1 MTGTTNANTTATGLTSTLNLPQVSAFVNNWANLGMWWFSI 40
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 24.9 bits (54), Expect = 7.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 36 DYWVTIRGPEETRIVLAFLRLDLEPQSECLY 66
+ +++ +G E V FL+L L S L+
Sbjct: 453 EAYLSCKGKNEREAVENFLKLTLSGTSSGLH 483
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 25.0 bits (55), Expect = 8.0
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 14 SLTGTEGFITSPA 26
SL G E FIT PA
Sbjct: 308 SLGGVESFITYPA 320
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,607,528
Number of extensions: 362532
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 14
Length of query: 94
Length of database: 10,937,602
Length adjustment: 61
Effective length of query: 33
Effective length of database: 8,232,008
Effective search space: 271656264
Effective search space used: 271656264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)