RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16691
(94 letters)
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport,
disease M disulfide bond, glycoprotein, secreted,
transport, choleste metabolism; HET: NAG BMA MAN B12;
3.30A {Homo sapiens}
Length = 457
Score = 85.3 bits (211), Expect = 3e-21
Identities = 26/79 (32%), Positives = 34/79 (43%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
LT + G I SP P+ Y + ++ I I L F LE C DY+E+Y
Sbjct: 5 LTESTGTIQSPGHPNVYPHGINCTWHILVQPNHLIHLMFETFHLEFHYNCTNDYLEVYDT 64
Query: 75 ASVTPPTRLCGNHHISALT 93
S T R CG +LT
Sbjct: 65 DSETSLGRYCGKSIPPSLT 83
Score = 80.7 bits (199), Expect = 1e-19
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
+LT + G SP +P Y ++ + + ++ + L F LE C DY+ +Y
Sbjct: 237 NLTTSSGTFISPNYPMPYYHSSECYWWLKSSHGSAFELEFKDFHLEHHPNCTLDYLAVYD 296
Query: 74 AASVTPPT--RLCGNHHISALT 93
S +LCG+ +
Sbjct: 297 GPSSNSHLLTQLCGDEKPPLIR 318
Score = 69.5 bits (170), Expect = 9e-16
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 12 NTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEM 71
+ T G + S +P+ Y+ N TIR + FL DLE C DY+E+
Sbjct: 350 VVIVNQTYGILESIGYPNPYSENQHCNWTIRATTGNTVNYTFLAFDLEHHINCSTDYLEL 409
Query: 72 YHAASVTPPTRLCGNH 87
Y R CG
Sbjct: 410 YDGPRQM--GRYCGVD 423
Score = 66.1 bits (161), Expect = 2e-14
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 16 TGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEP-QSECLYDYVEMYHA 74
T G TSP FP+NY NN + I I + F LE D++E+
Sbjct: 122 TDDLGTFTSPNFPNNYPNNWECIYRITVRTGQLIAVHFTNFSLEEAIGNYYTDFLEIRDG 181
Query: 75 ASVTPPT--RLCGNHHISALT 93
P G++ +
Sbjct: 182 GYEKSPLLGIFYGSNLPPTII 202
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein,
cell adhesion, extracellular matrix; 2.30A {Homo
sapiens}
Length = 149
Score = 76.3 bits (188), Expect = 2e-19
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
T + SP FP+ Y +N YW IR RI L+FL DLE CL DYVE+Y
Sbjct: 11 FTDPKQIFKSPGFPNEYEDNQICYW-HIRLKYGQRIHLSFLDFDLEDDPGCLADYVEIYD 69
Query: 74 AASVTPPT--RLCGNHHISALT 93
+ R CG+ +
Sbjct: 70 SYDDVHGFVGRYCGDELPDDII 91
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 77.3 bits (190), Expect = 6e-19
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
L G I SP +P +Y ++ + I P+ RI L F+ +LE C YDYV++
Sbjct: 5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVE-- 62
Query: 75 ASVTPPTRLCGNH 87
CG
Sbjct: 63 TEDQVLATFCGRE 75
Score = 64.2 bits (156), Expect = 5e-14
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRL-DLE--PQSECLYDYVEM 71
T G ITSP FP+ Y + + TI E + L F + D+E P+ C YDY+++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKI 230
Query: 72 YHAASVTPPTRLCGNH 87
V CG
Sbjct: 231 KVGPKV--LGPFCGEK 244
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 78.1 bits (192), Expect = 8e-19
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 14 SLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
L G I SP +P +Y ++ + I P+ RI L F+ +LE C YDYV++
Sbjct: 4 ELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVET 63
Query: 74 AASVTPPTRLCGNH 87
V CG
Sbjct: 64 EDQVL--ATFCGRE 75
Score = 65.8 bits (160), Expect = 2e-14
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR---LDLEPQSECLYDYVEM 71
T G ITSP FP+ Y + + TI E + L F ++ P+ C YDY+++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKI 230
Query: 72 YHAASVTPPTRLCGNH 87
CG
Sbjct: 231 K--VGPKVLGPFCGEK 244
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 71.1 bits (174), Expect = 3e-17
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
G + SP FP YAN+ + W T+ P R+ L F DLE C YD+V++
Sbjct: 8 PEPVFGRLASPGFPGEYANDQERRW-TLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSS 66
Query: 74 AASVTPPT--RLCGN 86
A V + +
Sbjct: 67 GAKVLATLCGQESTD 81
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 69.1 bits (169), Expect = 1e-16
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 19 EGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAASV 77
G I SP +P Y + ++ W I PE I L F LD+E C YD V++ +
Sbjct: 5 YGEILSPNYPQAYPSEVEKSW-DIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTE 63
Query: 78 TPPT--RLCGN 86
+ N
Sbjct: 64 EGRLCGQRSSN 74
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 71.1 bits (174), Expect = 1e-16
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 17 GTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAAS 76
G + SP FP Y N+ D T+ P R+ L F +LE C YD+V++
Sbjct: 6 PVFGRLVSPGFPEKYGNHQDRSWTLTAPPGFRLRLYFTHFNLELSYRCEYDFVKLTSGTK 65
Query: 77 VTPPTRLCGNH 87
V LCG
Sbjct: 66 VL--ATLCGQE 74
Score = 66.1 bits (161), Expect = 1e-14
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 1 MMKNEKNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLR---LD 57
K+ + + + TG GF++SP +P Y IR E I L F+ ++
Sbjct: 156 QNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVESFDVE 215
Query: 58 LEPQSECLYDYVEMYHAASVTPPTRLCGNHHISALT 93
+ P+++C YD +++ CG +
Sbjct: 216 MHPEAQCPYDSLKIQ--TDKREYGPFCGKTLPPRIE 249
>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding
site, complex with ethylamine, COMP protein, lectin
pathway of complement; 1.45A {Rattus norvegicus} PDB:
3pob_A 3pof_A 3pog_A 3poi_A 3poe_A
Length = 115
Score = 66.2 bits (162), Expect = 6e-16
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFL-RLDLEPQSE--CLYDYVEM 71
T G ITSP +P+ Y + + TI E + L F D+E E C YDY+++
Sbjct: 9 FTQRTGTITSPDYPNPYPKSSECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKI 68
Query: 72 YHAASVTPPTRLCGNHHISALT 93
A CG ++
Sbjct: 69 K--AGSKVWGPFCGEKSPEPIS 88
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB:
2qql_A
Length = 579
Score = 70.4 bits (172), Expect = 6e-16
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEET-RIVLAFLRLDLEPQSECLYDYVEMYH 73
+ G+ITSP +P +Y ++ + + PE +IVL F + +C YD++E+
Sbjct: 11 NSKDAGYITSPGYPQDYPSHQNCEWIVYAPEPNQKIVLNFNPHFEIEKHDCKYDFIEIRD 70
Query: 74 AASVTPPT--RLCGNHHISALT 93
S + + CGN +
Sbjct: 71 GDSESADLLGKHCGNIAPPTII 92
Score = 69.2 bits (169), Expect = 1e-15
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEP------QSECLYDY 68
T G I SP FP Y +NLD TI + I+L FL DLE + +C YD+
Sbjct: 131 FTSPNGTIESPGFPEKYPHNLDCTFTILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYDW 190
Query: 69 VEMYHAASVTPP--TRLCGNH 87
++++ P + CG
Sbjct: 191 LDIWDGIPHVGPLIGKYCGTK 211
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 68.5 bits (167), Expect = 2e-15
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSE------CLYD 67
T G I SP FP Y N+L+ + + P+ + I+L F DLEP S C YD
Sbjct: 15 YTTPSGVIKSPGFPEKYPNSLECTY-IVFAPKMSEIILEFESFDLEPDSNPPGGMFCRYD 73
Query: 68 YVEMYHAASVTPP--TRLCGN 86
+E++ P R CG
Sbjct: 74 RLEIWDGFPDVGPHIGRYCGQ 94
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 65.1 bits (158), Expect = 3e-14
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEP------QSECLYD 67
T G I SP FP Y +NLD + TI + I+L FL DLE + +C YD
Sbjct: 12 FTSPNGTIESPGFPEKYPHNLDCTF-TILAKPKMEIILQFLIFDLEHDPLQVGEGDCKYD 70
Query: 68 YVEMYHAASVTPPT--RLCGNH 87
+++++ P + CG
Sbjct: 71 WLDIWDGIPHVGPLIGKYCGTK 92
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma
proteins, spermadhesins, CUB domain architecture,
complex (seminal plasma protein/SPP); 2.40A {Sus
scrofa} SCOP: b.23.1.1
Length = 116
Score = 57.8 bits (140), Expect = 1e-12
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 6 KNPVNANTSLTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECL 65
P + T G I++ N W TI + ++ +A L+L C
Sbjct: 4 NGPDECGRVIKDTSGSISNTDRQKNLC----TW-TILMKPDQKVRMAIPYLNL----ACG 54
Query: 66 YDYVEMYHAASVTPPT-RLCGNHHIS 90
+YVE++ P +LC I
Sbjct: 55 KEYVEVFDGLLSGPSYGKLCAGAAIV 80
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 57.3 bits (139), Expect = 2e-12
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 15 LTGTEGFITSPAFPSNYANNLD-YWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYH 73
L G I + Y + W TI+ P E + ++ L L C + +E+
Sbjct: 14 LKEESGVIATY-----YGPKTNCVW-TIQMPPEYHVRVSIQYLQL----NCNKESLEIID 63
Query: 74 AASVTPPT-RLCGN 86
+P ++C
Sbjct: 64 GLPGSPVLGKICEG 77
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex
(seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP:
b.23.1.1
Length = 109
Score = 56.6 bits (137), Expect = 3e-12
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 15 LTGTEGFITSPAFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHA 74
LT G I + W T++ + +++++ L+L C +YVE+
Sbjct: 10 LTDDYGTIFTY----KGPKTECVW-TLQVDPKYKLLVSIPTLNL----TCGKEYVEVLEG 60
Query: 75 ASVTPPT-RLCGNHHI 89
A + + C I
Sbjct: 61 APGSKSLGKFCEGLSI 76
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.002
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 23 TSP-------AFPSNYANNLDYWVTIRGPEETRIVLAFLRLDLEPQSECLYDYVEMYHAA 75
T+P + D W + + T I+ + L LEP +Y +M+
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN-VLEP-----AEYRKMFDRL 378
Query: 76 SVTPPTRLCGNHHISALT 93
SV PP + HI +
Sbjct: 379 SVFPP-----SAHIPTIL 391
Score = 25.6 bits (55), Expect = 3.2
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 10/50 (20%)
Query: 37 YWVTIRG---PEETRIVLAFLRLDLEPQSECLYDYVEMYHAASVTPPTRL 83
+W+ ++ PE +L L ++P D+ S R+
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRI 227
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich,
apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Length = 94
Score = 25.7 bits (56), Expect = 1.8
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 25 PAFPSNYANNLDYWVTIRGPEETRIVL 51
P N + WV E+ R+VL
Sbjct: 2 PLGSENRSKTTSTWVLRLDGEDLRVVL 28
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 25.4 bits (56), Expect = 2.9
Identities = 5/17 (29%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 32 ANNLDYW-VTIRGPEET 47
L+ + V GP+ T
Sbjct: 47 LGGLNEFVVKFYGPQGT 63
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 25.1 bits (55), Expect = 3.1
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 6 KNPVNANTSLTGTEGFITSPAFPSNYANNLDYW-VTIRGPEET 47
K + + G I S +L W I GP +T
Sbjct: 20 KTLASDDPIANPYRGIIESLNPIDE--TDLSKWEAIISGPSDT 60
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 24.0 bits (53), Expect = 8.3
Identities = 5/29 (17%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 29 SNYANNLDYW--VTIRGPEETRIVLAFLR 55
SN+ + + +T + P + ++ + L
Sbjct: 308 SNFRGLDESYVRITTQRPAQNQLFIKALE 336
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 23.9 bits (52), Expect = 8.8
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 18 TEGFITSPAFPSNYANNLDYWVTIRGPEET 47
T + S + I P+E
Sbjct: 46 TVTLNVITSPDSADRSQSPKLEVIVRPDEG 75
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 23.9 bits (52), Expect = 9.1
Identities = 2/16 (12%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 33 NNLDYW-VTIRGPEET 47
+ + W + ++ P ++
Sbjct: 47 DTIYNWILKVKAPADS 62
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 24.0 bits (53), Expect = 9.6
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 29 SNYANNLDYW--VTIRGPEETRIVLAFLR 55
+NY + V IR + +LA LR
Sbjct: 326 ANYPGLDSRYYRVAIRSAAQNERLLAALR 354
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,414,800
Number of extensions: 69563
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 37
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)