Query psy16692
Match_columns 1149
No_of_seqs 630 out of 3705
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:33:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16692.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16692hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0941|consensus 100.0 6.4E-76 1.4E-80 693.9 10.3 604 39-1148 4-613 (850)
2 KOG0941|consensus 100.0 3.8E-62 8.3E-67 577.2 -3.8 601 1-822 20-666 (850)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 2.2E-33 4.8E-38 318.6 23.5 274 1-313 110-429 (476)
4 COG5184 ATS1 Alpha-tubulin sup 100.0 2.4E-32 5.1E-37 310.2 21.2 279 5-314 59-378 (476)
5 KOG1427|consensus 100.0 1.2E-31 2.6E-36 285.7 15.5 258 2-298 65-402 (443)
6 KOG1427|consensus 100.0 4.8E-29 1E-33 266.0 14.2 250 13-294 19-299 (443)
7 KOG0942|consensus 99.9 5.7E-27 1.2E-31 279.4 8.7 195 612-834 603-826 (1001)
8 COG5021 HUL4 Ubiquitin-protein 99.9 3.4E-25 7.3E-30 274.0 11.3 147 649-821 509-680 (872)
9 KOG0942|consensus 99.9 3.1E-22 6.6E-27 239.3 12.7 153 936-1147 599-757 (1001)
10 KOG4427|consensus 99.9 5.1E-22 1.1E-26 231.3 13.4 195 610-846 671-896 (1096)
11 KOG0783|consensus 99.8 6E-21 1.3E-25 224.4 11.5 206 9-236 137-364 (1267)
12 COG5021 HUL4 Ubiquitin-protein 99.8 8.4E-21 1.8E-25 235.3 10.8 156 935-1147 470-629 (872)
13 cd00078 HECTc HECT domain; C-t 99.8 1.1E-20 2.4E-25 219.3 11.2 135 656-816 2-161 (352)
14 KOG0939|consensus 99.8 1.5E-20 3.3E-25 220.6 6.5 157 652-835 361-542 (720)
15 KOG4427|consensus 99.8 4.2E-19 9.2E-24 207.3 14.8 183 901-1147 640-828 (1096)
16 KOG0783|consensus 99.8 1.9E-18 4E-23 203.7 16.4 212 2-235 184-417 (1267)
17 KOG1428|consensus 99.8 2.4E-18 5.2E-23 207.2 17.3 216 2-244 575-856 (3738)
18 KOG0939|consensus 99.8 4.9E-19 1.1E-23 208.1 10.1 140 935-1142 331-470 (720)
19 cd00078 HECTc HECT domain; C-t 99.7 5.8E-18 1.3E-22 196.6 10.5 110 988-1147 2-113 (352)
20 KOG1428|consensus 99.7 6.7E-16 1.5E-20 186.6 17.0 242 3-298 487-840 (3738)
21 smart00119 HECTc Domain Homolo 99.6 3.1E-16 6.8E-21 180.8 10.1 106 706-814 16-141 (336)
22 KOG0940|consensus 99.6 3E-16 6.4E-21 179.4 3.1 156 649-846 11-190 (358)
23 KOG0170|consensus 99.5 4.8E-15 1E-19 168.8 4.1 213 900-1147 132-355 (621)
24 smart00119 HECTc Domain Homolo 99.5 1.6E-14 3.5E-19 166.6 7.8 91 1008-1147 3-95 (336)
25 PF00632 HECT: HECT-domain (ub 99.3 9.3E-13 2E-17 151.1 7.0 109 689-817 1-122 (317)
26 KOG0940|consensus 99.2 1.7E-12 3.7E-17 148.8 2.2 111 982-1142 12-122 (358)
27 KOG0170|consensus 99.1 8.6E-11 1.9E-15 134.7 7.9 136 655-797 226-386 (621)
28 PF00415 RCC1: Regulator of ch 99.0 9.2E-10 2E-14 91.6 5.3 51 79-130 1-51 (51)
29 PF00415 RCC1: Regulator of ch 98.9 1.5E-09 3.3E-14 90.3 5.5 51 171-221 1-51 (51)
30 PF13540 RCC1_2: Regulator of 98.6 6E-08 1.3E-12 72.0 4.5 30 51-92 1-30 (30)
31 PF13540 RCC1_2: Regulator of 98.5 2.4E-07 5.3E-12 68.8 4.8 30 208-238 1-30 (30)
32 PF00632 HECT: HECT-domain (ub 97.7 3.2E-05 7E-10 89.0 4.0 68 1049-1147 1-69 (317)
33 KOG0943|consensus 95.3 0.022 4.7E-07 71.8 5.6 61 741-801 2742-2802(3015)
34 KOG0315|consensus 84.0 66 0.0014 36.0 17.2 55 125-179 137-196 (311)
35 KOG0943|consensus 83.9 0.24 5.3E-06 63.0 -1.1 123 48-184 373-509 (3015)
36 KOG3669|consensus 79.8 49 0.0011 40.8 15.7 59 116-176 228-298 (705)
37 KOG3669|consensus 75.4 74 0.0016 39.3 15.5 71 50-139 228-299 (705)
38 KOG0315|consensus 75.1 97 0.0021 34.8 15.1 169 49-234 9-197 (311)
39 PF04841 Vps16_N: Vps16, N-ter 69.3 2.6E+02 0.0057 33.7 18.9 45 131-177 197-243 (410)
40 KOG1900|consensus 68.1 59 0.0013 43.8 13.6 157 8-186 93-278 (1311)
41 PRK05560 DNA gyrase subunit A; 58.2 5.7E+02 0.012 33.8 20.2 112 71-185 549-675 (805)
42 PF11725 AvrE: Pathogenicity f 57.9 64 0.0014 44.6 11.4 113 109-224 697-814 (1774)
43 KOG0291|consensus 57.3 5.4E+02 0.012 33.3 18.4 103 73-182 312-424 (893)
44 PF07569 Hira: TUP1-like enhan 53.3 65 0.0014 35.5 9.1 30 114-143 12-41 (219)
45 TIGR01063 gyrA DNA gyrase, A s 53.0 4E+02 0.0086 35.3 17.5 113 71-186 547-674 (800)
46 COG4257 Vgb Streptogramin lyas 49.1 1.2E+02 0.0026 34.6 10.1 138 3-177 62-205 (353)
47 PF11725 AvrE: Pathogenicity f 45.6 68 0.0015 44.3 8.8 69 67-146 564-635 (1774)
48 PF07569 Hira: TUP1-like enhan 44.1 74 0.0016 35.0 7.7 30 150-181 12-41 (219)
49 KOG0296|consensus 40.2 4.8E+02 0.01 30.9 13.3 92 133-239 264-360 (399)
50 KOG0293|consensus 35.1 2.2E+02 0.0048 34.1 9.8 65 117-182 443-515 (519)
51 PHA02713 hypothetical protein; 33.8 7.7E+02 0.017 31.1 15.4 14 75-88 347-360 (557)
52 TIGR01062 parC_Gneg DNA topois 32.2 8.9E+02 0.019 31.8 15.6 118 3-143 535-655 (735)
53 TIGR03300 assembly_YfgL outer 28.6 5.2E+02 0.011 30.2 12.1 50 125-177 321-376 (377)
54 PHA03098 kelch-like protein; P 26.9 1E+03 0.022 29.5 14.8 191 4-232 285-494 (534)
55 KOG1900|consensus 26.1 5.4E+02 0.012 35.3 12.2 162 73-240 92-278 (1311)
56 KOG1240|consensus 24.8 5.6E+02 0.012 35.0 11.7 112 116-234 1050-1181(1431)
57 COG0562 Glf UDP-galactopyranos 24.3 48 0.001 38.5 2.2 60 718-783 53-115 (374)
58 KOG1274|consensus 23.8 1.3E+03 0.028 30.7 14.4 149 3-180 14-168 (933)
59 TIGR01063 gyrA DNA gyrase, A s 23.6 1.8E+03 0.04 29.3 20.7 153 3-178 545-716 (800)
60 PRK13979 DNA topoisomerase IV 22.0 2.1E+03 0.046 29.4 20.1 111 71-186 564-695 (957)
61 PRK05560 DNA gyrase subunit A; 21.6 2E+03 0.043 28.9 20.9 154 4-177 548-718 (805)
62 KOG0649|consensus 20.5 9.3E+02 0.02 27.3 10.8 143 9-176 17-173 (325)
No 1
>KOG0941|consensus
Probab=100.00 E-value=6.4e-76 Score=693.94 Aligned_cols=604 Identities=30% Similarity=0.509 Sum_probs=501.6
Q ss_pred cceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEE
Q psy16692 39 IPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVV 118 (1149)
Q Consensus 39 ~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~ 118 (1149)
.|..+..+...++.|++||. +|+++++..|++|+||.|.+||+|.+. ...+.. |..++++.|.+..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn------------~hclal~~~g~~~~wg~~~~g~~~~~~-~~~~~~-p~~~~sl~g~p~a 69 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGN------------NHCLALSCAGELFVWGMNNNGQLGRAL-YFPDAK-PEPVESLKGVPLA 69 (850)
T ss_pred hhHHHHHHhhhhhhhhcccc------------HHHHhhhccCCeeeccCCccchhhhhc-cCCCCC-CccchhhcCCcHH
Confidence 45556666667899999999 999999999999999999999999994 444445 9999999999999
Q ss_pred EEEeCCCeeEEEecCceEEEecCCCCCCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccE
Q psy16692 119 QACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQ 198 (1149)
Q Consensus 119 ~Ia~G~~hs~aLT~~G~Vy~wG~n~qlG~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~ 198 (1149)
+|+||.+|+++++. |+++ +|.+|.++++|++..||+||+...+.. .|.
T Consensus 70 ~v~~g~~hs~~lS~-----------------------------~~~~--lt~e~~~fs~Ga~~~~q~~h~~~~~~~-~~~ 117 (850)
T KOG0941|consen 70 QVSAGEAHSFALSS-----------------------------HTVL--LTDEGKVFSFGAGSTGQLGHSLTENEV-LPL 117 (850)
T ss_pred HHhcCCCcchhhhh-----------------------------chhh--cchhccccccCCccccccccccccccc-ccH
Confidence 99999999999762 8888 999999999999999999997666666 899
Q ss_pred EecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCc
Q psy16692 199 RVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGL 277 (1149)
Q Consensus 199 ~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~ 277 (1149)
.+..+.+..+++|+||..||++....-|++|.+|.+..| .+.- ....+. .+.......+.
T Consensus 118 ~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG---k~~i~s~s~~~----------------~l~~~d~~~~~ 178 (850)
T KOG0941|consen 118 LVLELIGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASG---KGVIVSLSGED----------------LLRDHDSEKDH 178 (850)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhhhhhcceeecccCCCC---Cceeeccchhh----------------hcccccHHHHH
Confidence 998889999999999999999988888999999998887 0000 000000 00011122345
Q ss_pred ceEEEeecCCeEEEEEecCCCCCCCcccccccccCcccccCH-HHHHHHHHHhhhccccccccHHHHHHHHhhcCchhhh
Q psy16692 278 VVKKIYSGGDHSIVTVTKSSDGVLSDDFRVLNPATQILDVNF-ERLKECEREVEQLKSDETLDQDLLLYLETVFLSPGCM 356 (1149)
Q Consensus 278 ~V~~IaaG~~hS~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~l~~~~~~~~~~~~~~~~~~~l~~~l~~vfSS~acl 356 (1149)
.+..+++|+++++.+........++++++..++...+.++.. .++..|... .......++++.++.+|||++|.
T Consensus 179 ~~~~~~~g~dq~~~l~~~~~~~~~~~d~~n~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~l~~~~~llss~a~~ 253 (850)
T KOG0941|consen 179 RCSLAFAGGDQTFSLSSKGENSQGDNDLSNLNPSDHYVDLIAERRVALLLKK-----LEKGDNTAILNAIELLLSSLACD 253 (850)
T ss_pred HHHHHhcCCCceEEEEeecccccccchhhhcCCcccceechhhhhHHHHHhh-----cccchHHHHHHHHHHHhhhHhhc
Confidence 567789999999999999999999999999988888877763 445555442 12345567788888899999999
Q ss_pred cccccccccccccccCCccchhhhhhHHHHHHhhhcccccccccccCCCccCCCCCCccchhhhhhcCCCCCCCCccccc
Q psy16692 357 NGSFLQVENDEHFSCNSKKFSFIKLSLINWFMKLHFSIFGQGFGCVCPTVLGDCVPKSWLYLETVFLSPGCMNGSFLQVE 436 (1149)
Q Consensus 357 n~~~~~~~~~~h~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 436 (1149)
|++|+ ...
T Consensus 254 ~~s~l------------------------------------------------------------------------~k~ 261 (850)
T KOG0941|consen 254 NTSFL------------------------------------------------------------------------DKS 261 (850)
T ss_pred cchhh------------------------------------------------------------------------hhh
Confidence 88444 333
Q ss_pred CCcccccCCCCCCCchhhhHHHhhHHHhhhhhhHHHHHH-HHHHHhhhhcccccccCCCchHHHHHHHHhchhhhcccCc
Q psy16692 437 NDEHFSCNSKNPGVDMQLCQDCYDTIARIERESVRSLVS-NLAILASHAHLVKSLWNTPPDAEALRMFLTLPLYHEFMNP 515 (1149)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~l~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 515 (1149)
.+.++.|....+++|++.++..|..++......+.+.+. ++ ...+++.|...++++|.+++++.||+++.+...
T Consensus 262 ~~~~~~c~~~~~~ld~~~~~~~f~~l~~~~~~~~~~~l~~~~-----~~~L~~~~s~~~~d~e~~~i~l~l~~~~~~~~s 336 (850)
T KOG0941|consen 262 RDCNVFCSFQIHGLDLNLARPAFLELTLPLFCKILSELLVAI-----QKRLIRLWSKYPADQEALYILLLLPLIPLNVLS 336 (850)
T ss_pred hccccccceecccccHHHHHHHHHHHhhhhHHHHHHHHHHHH-----HHHHHhhhhhCCcHHHHHHHHHHcccchHHHHH
Confidence 344555666677899999999999999866666666554 55 578888899899999999999999999887776
Q ss_pred cceeEEEecccccCccceeeccccccccccCccchhhHHHHHHHHhhhhhhhhcccceeeeeeeeccccccccccccCCC
Q psy16692 516 RQHEILHMPFAGALPAFWIVVFGSLIGICGLGHLDFYRELLLSISNFCDRLFLVGNSVLLVLCVLMFYPLSHIHRFRTPG 595 (1149)
Q Consensus 516 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~~~l~~~~fy~~~~~~~~~~~~ 595 (1149)
..+.++.+|++++++
T Consensus 337 ~~~~s~~vp~~~~i~----------------------------------------------------------------- 351 (850)
T KOG0941|consen 337 NEYNSLNVPFADAIC----------------------------------------------------------------- 351 (850)
T ss_pred HHHHhccCcHHHHHH-----------------------------------------------------------------
Confidence 555555555553322
Q ss_pred CeeeccCCCCeEEeeccCcccCccccccccccccccccchhhhhhhhhhcccCCcCCceEEEEEeCCCchhHhHhhhhcc
Q psy16692 596 PIVLMHGTLPLVIYCDQYFFPCPSCYTLALMEPRSTLTGTLKRASVIVCGLTGLVLSQFYVLQRDRTFELVGITVLLLVV 675 (1149)
Q Consensus 596 ~~~~~~~~~~~f~~C~~~~f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~VrR~~~l~~ds~~~l~l 675 (1149)
T Consensus 352 -------------------------------------------------------------------------------- 351 (850)
T KOG0941|consen 352 -------------------------------------------------------------------------------- 351 (850)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCccccccceeecCCCeEEcCCCcccchhhHHHHHHHHHHhh
Q psy16692 676 PYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINHYGITEYEETRSIWFSEDTFEDQNMCFLIGTLCGLAI 755 (1149)
Q Consensus 676 ~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~yglf~~~~~~~~~~~~~s~~~~~~f~~iG~l~glAl 755 (1149)
T Consensus 352 -------------------------------------------------------------------------------- 351 (850)
T KOG0941|consen 352 -------------------------------------------------------------------------------- 351 (850)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceeccCCcHHHHHHHhCCCCCccchhhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccE
Q psy16692 756 YNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQC 835 (1149)
Q Consensus 756 y~~~~ld~~F~~~fykkLLg~~~~l~DL~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~ 835 (1149)
.+.++ .++.-..||+.+.+++|.+++.+|+.+
T Consensus 352 ----------------------------------------~~~~~--------~~~~l~~~~~~~~~k~~~~~v~~f~~~ 383 (850)
T KOG0941|consen 352 ----------------------------------------IVAEN--------KRLKLVEYWNQLSPKYFRKLVSMFKEA 383 (850)
T ss_pred ----------------------------------------Hhhcc--------hHHHHHHHHHHhchhhcchhhhchhhH
Confidence 00000 222346799999999999999999999
Q ss_pred EEEEecCCCcccCCCCccccchhHHHHHHHHHHHHHhhccccccccccCCccccccCCCCCCCCCCCCCCcccccccccc
Q psy16692 836 LIYLLQQPGVVDSTNGDITFNRKLSFCLQVLQKLNSLNNETLTSSISAGGRTVSNIRTPAPHGGRKVAYTAFYMPDLATV 915 (1149)
Q Consensus 836 I~~~L~~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fy~~~l~~~ 915 (1149)
|..+++..+..... ++.+.+++.+|++||++|.+. +.||+++||++++++.
T Consensus 384 V~~~l~~~~~~~~e------~~~i~~~l~~~~lly~vN~~~-----------------------~lip~e~FY~~~l~~~ 434 (850)
T KOG0941|consen 384 VTEILKFSKELAEE------NKGIRSALKLLELLYKVNCRK-----------------------GLIPYEEFYNEELNDR 434 (850)
T ss_pred HHHhhhccchhhhh------ccchhhHHHHHHHHHHHhccC-----------------------CCCCHHHhhhHHHHhH
Confidence 99999887666543 789999999999999999665 6799999999999999
Q ss_pred cchHHHHHHHhcCCCCCCcceeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCc
Q psy16692 916 CDIRIDYFRWISGRPNGSTRDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDN 995 (1149)
Q Consensus 916 ~~~~~d~~~w~~~~~~~~~~~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~ 995 (1149)
+|+++||..|+....+ .|+||+|||||+..+|++++++|++++|+.+++++++.......+ ...+||+.|+|||++
T Consensus 435 id~~~dy~~w~~~~~~---~fsfc~ypFIL~~~aK~~lL~yD~rlrM~~~~~~a~~~s~~~~~~-~~~~p~l~l~VrR~~ 510 (850)
T KOG0941|consen 435 IDMKEDYVHWRTKQMN---CFSFCNYPFILNAVAKIELLQYDARLRMESERRKAFLSSLFQGLQ-LLVSPYLKLTVRRDH 510 (850)
T ss_pred HHHHHHHHHHHHHhcc---cceeecCCeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCCCcEEEEEehhh
Confidence 9999999999987642 799999999999999999999999999999999999987666555 337899999999999
Q ss_pred hHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceeecC
Q psy16692 996 IVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFS 1075 (1149)
Q Consensus 996 i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~~~ 1075 (1149)
|++||+++|+..+..||||+|+| +|.||+|+|+|||+||||+||++|+|+|+||||+++|+++.+||+
T Consensus 511 lv~Dsl~~l~~~~~~Dl~K~L~V------------~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~~~WF~ 578 (850)
T KOG0941|consen 511 LVEDALRQLSMISMSDLKKQLKV------------EFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESSLLWFN 578 (850)
T ss_pred hHHHHHHHHHhhhhhhhhcceEE------------EECCCcccccCchHHHHHHHHHHHHcCccccCeecccccceeeec
Confidence 99999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc---cCCCCC
Q psy16692 1076 EDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV---RFPART 1148 (1149)
Q Consensus 1076 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~---~fP~a~ 1148 (1149)
+ .+++..++|+++|++||+||||.++ |||+|+
T Consensus 579 ~-----------------------------------------~~~~~~~~y~liGil~GLAIyN~~ildlpFPlAl 613 (850)
T KOG0941|consen 579 P-----------------------------------------SPFEEEKQYHLIGILCGLAIYNNTILDLPFPLAL 613 (850)
T ss_pred C-----------------------------------------CCCCccceeeehhHHHHHHHhccceecCCCcHHH
Confidence 9 4566677999999999999999999 999885
No 2
>KOG0941|consensus
Probab=100.00 E-value=3.8e-62 Score=577.21 Aligned_cols=601 Identities=24% Similarity=0.312 Sum_probs=414.3
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
+||.+|++|++..|++|+||.|.+||+|.+.. ..... |.+++++.|.+..+|+||.+|+++++ .|+++++.+|
T Consensus 20 ~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~-~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS-----~~~~~lt~e~ 92 (850)
T KOG0941|consen 20 GCGNNHCLALSCAGELFVWGMNNNGQLGRALY-FPDAK-PEPVESLKGVPLAQVSAGEAHSFALS-----SHTVLLTDEG 92 (850)
T ss_pred ccccHHHHhhhccCCeeeccCCccchhhhhcc-CCCCC-CccchhhcCCcHHHHhcCCCcchhhh-----hchhhcchhc
Confidence 69999999999999999999999999999943 23444 99999999999999999999999998 4999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCCCCCCCCCCCeEEEEecC
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQD 160 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~qlG~~~~~~V~~Is~G~ 160 (1149)
.++++|....||+|++. ......|..+..+-+..+.+|+||..|+.+.
T Consensus 93 ~~fs~Ga~~~~q~~h~~--~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~------------------------------ 140 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSL--TENEVLPLLVLELIGSRVTRIACVRGHTLAI------------------------------ 140 (850)
T ss_pred cccccCCcccccccccc--cccccccHHHHHHHhhhhHHHHHHHHHHHhh------------------------------
Confidence 99999999999999954 4555678777777777888888888887764
Q ss_pred CeeEEEEeCCCCcEEEEecCCCC--CcccCCCCCcccccEEecc---cCCCCEEEEEecCCeEEEEEecCCcEEEEecCC
Q psy16692 161 SHTTITSLNSPGELYTWGNNEYG--QMGINNSNTTVTKPQRVES---LVNLPIALIACGANHSFVLSKSVSRLYAFGIGS 235 (1149)
Q Consensus 161 ~hs~a~~Lt~~G~VyswG~n~~G--QLG~g~~~~~~~~P~~V~~---l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~ 235 (1149)
+..-|++|.+|.+..| ++- ... .+.+... -.+..+.++.+|++.++.+... ..-..|.+.
T Consensus 141 -------v~~l~qsf~~~~~~sGk~~i~-----s~s-~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~--~~~~~~~~d 205 (850)
T KOG0941|consen 141 -------VPRLGQSFSFGKGASGKGVIV-----SLS-GEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSK--GENSQGDND 205 (850)
T ss_pred -------hhhhcceeecccCCCCCceee-----ccc-hhhhcccccHHHHHHHHHHhcCCCceEEEEee--cccccccch
Confidence 4455778888877766 111 000 0100000 0112356788999999998765 222333333
Q ss_pred CCCCCCCCCCcccceEecC-CCc-----CCccccccCccccccccCCcceEEEeecCCeEEEEEecCCCCCCCccccccc
Q psy16692 236 AVQLDSPKSVHKTPQLIHG-PWI-----ASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDGVLSDDFRVLN 309 (1149)
Q Consensus 236 ~GQLG~g~~~~~~P~~V~~-p~~-----~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~~~~~~~~~~~~ 309 (1149)
.-++.....-...|..... ++. ....+.......++++ .+|+. .+ .+..+.+. ...
T Consensus 206 ~~n~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~llss--------~a~~~-~s-~l~k~~~~--------~~~ 267 (850)
T KOG0941|consen 206 LSNLNPSDHYVDLIAERRVALLLKKLEKGDNTAILNAIELLLSS--------LACDN-TS-FLDKSRDC--------NVF 267 (850)
T ss_pred hhhcCCcccceechhhhhHHHHHhhcccchHHHHHHHHHHHhhh--------Hhhcc-ch-hhhhhhcc--------ccc
Confidence 2223222221111111110 000 0000000000001111 11110 00 00000000 001
Q ss_pred ccCcccccCHHHHHHHHHH-------hhhccccccccHHHHHHHHhhcCchhhhcccccccccccccccCCccchhhhhh
Q psy16692 310 PATQILDVNFERLKECERE-------VEQLKSDETLDQDLLLYLETVFLSPGCMNGSFLQVENDEHFSCNSKKFSFIKLS 382 (1149)
Q Consensus 310 ~~~~i~~~~~~~l~~~~~~-------~~~~~~~~~~~~~l~~~l~~vfSS~acln~~~~~~~~~~h~~~~~~~~~~~~l~ 382 (1149)
...++..++...+...-.. .............+.+.+ .++++..++.+.+..+|..|+...++++..+.+|
T Consensus 268 c~~~~~~ld~~~~~~~f~~l~~~~~~~~~~~l~~~~~~~L~~~~--s~~~~d~e~~~i~l~l~~~~~~~~s~~~~s~~vp 345 (850)
T KOG0941|consen 268 CSFQIHGLDLNLARPAFLELTLPLFCKILSELLVAIQKRLIRLW--SKYPADQEALYILLLLPLIPLNVLSNEYNSLNVP 345 (850)
T ss_pred cceecccccHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh--hhCCcHHHHHHHHHHcccchHHHHHHHHHhccCc
Confidence 1112222222222221110 000011112233344444 4567889999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccccCCCccCCCCCCccchhhhhhcCCCCCCCCcccccCCcccccCCCCCC-----CchhhhHH
Q psy16692 383 LINWFMKLHFSIFGQGFGCVCPTVLGDCVPKSWLYLETVFLSPGCMNGSFLQVENDEHFSCNSKNPG-----VDMQLCQD 457 (1149)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~-----~~~~~~~~ 457 (1149)
+++++..+ ..++. -+......
T Consensus 346 ~~~~i~~~------------------------------------------------------~~~~~~~l~~~~~~~~~k 371 (850)
T KOG0941|consen 346 FADAICIV------------------------------------------------------AENKRLKLVEYWNQLSPK 371 (850)
T ss_pred HHHHHHHh------------------------------------------------------hcchHHHHHHHHHHhchh
Confidence 98888877 11100 12344555
Q ss_pred HhhHHHhhhhhhHHHHHHHHHHHhhhhcccccccCCCchHHHHHHHHhchhhhcccCccceeEEEecccccCccceeecc
Q psy16692 458 CYDTIARIERESVRSLVSNLAILASHAHLVKSLWNTPPDAEALRMFLTLPLYHEFMNPRQHEILHMPFAGALPAFWIVVF 537 (1149)
Q Consensus 458 ~f~~l~~~~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 537 (1149)
+|++++..+++.+..++..-. ..
T Consensus 372 ~~~~~v~~f~~~V~~~l~~~~------~~--------------------------------------------------- 394 (850)
T KOG0941|consen 372 YFRKLVSMFKEAVTEILKFSK------EL--------------------------------------------------- 394 (850)
T ss_pred hcchhhhchhhHHHHhhhccc------hh---------------------------------------------------
Confidence 666666666666554432110 00
Q ss_pred ccccccccCccchhhHHHHHHHHhhhhhhhhcccceeeeeeeeccccc---cccccccCCCCeeeccCCCCeEEeeccCc
Q psy16692 538 GSLIGICGLGHLDFYRELLLSISNFCDRLFLVGNSVLLVLCVLMFYPL---SHIHRFRTPGPIVLMHGTLPLVIYCDQYF 614 (1149)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~~~l~~~~fy~~---~~~~~~~~~~~~~~~~~~~~~f~~C~~~~ 614 (1149)
...+..++.++..+++|+.+| .+.+.|||+.||+. +.|+.+++|.+|.....+ -|+||+ ||
T Consensus 395 ------------~~e~~~i~~~l~~~~lly~vN-~~~~lip~e~FY~~~l~~~id~~~dy~~w~~~~~~--~fsfc~-yp 458 (850)
T KOG0941|consen 395 ------------AEENKGIRSALKLLELLYKVN-CRKGLIPYEEFYNEELNDRIDMKEDYVHWRTKQMN--CFSFCN-YP 458 (850)
T ss_pred ------------hhhccchhhHHHHHHHHHHHh-ccCCCCCHHHhhhHHHHhHHHHHHHHHHHHHHhcc--cceeec-CC
Confidence 000222336667778888888 66678899999966 888889999988876444 699998 99
Q ss_pred ccCccccccccccccccccchhhhhhhhhhcccC-Cc--CCceEEEEEeCCCchhHhHhhhh------ccCCceEEE---
Q psy16692 615 FPCPSCYTLALMEPRSTLTGTLKRASVIVCGLTG-LV--LSQFYVLQRDRTFELVGITVLLL------VVPYPLRML--- 682 (1149)
Q Consensus 615 f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~--- 682 (1149)
||++..+|+.++|.|+.++|..++..+.+.++.. .. ..|+|.|+|||+ +|++||+++| |++|+|+|.
T Consensus 459 FIL~~~aK~~lL~yD~rlrM~~~~~~a~~~s~~~~~~~~~~p~l~l~VrR~-~lv~Dsl~~l~~~~~~Dl~K~L~V~F~g 537 (850)
T KOG0941|consen 459 FILNAVAKIELLQYDARLRMESERRKAFLSSLFQGLQLLVSPYLKLTVRRD-HLVEDALRQLSMISMSDLKKQLKVEFVG 537 (850)
T ss_pred eecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcEEEEEehh-hhHHHHHHHHHhhhhhhhhcceEEEECC
Confidence 9999999999999999999999988888876333 32 679999999999 9999999999 799999999
Q ss_pred --------EehhhHHHHHHhhcCCCCCcCCCCCCccccCCCccccccceeecCCCeEEcCCCcccchhhHHHHHHHHHHh
Q psy16692 683 --------ATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINHYGITEYEETRSIWFSEDTFEDQNMCFLIGTLCGLA 754 (1149)
Q Consensus 683 --------~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~yglf~~~~~~~~~~~~~s~~~~~~f~~iG~l~glA 754 (1149)
++||||.+|++|+++|.|||| ..+++++.+||++.+.+.+++|+++|++||+|
T Consensus 538 E~g~DaGGv~kEfF~ll~~ei~~p~~GmF-------------------~~~e~s~~~WF~~~~~~~~~~y~liGil~GLA 598 (850)
T KOG0941|consen 538 EEGVDAGGVRKEFFQLLVEEIFNPEYGMF-------------------TYDEESSLLWFNPSPFEEEKQYHLIGILCGLA 598 (850)
T ss_pred CcccccCchHHHHHHHHHHHHcCccccCe-------------------ecccccceeeecCCCCCccceeeehhHHHHHH
Confidence 455555555555555554444 23577889999999999999999999999999
Q ss_pred hhcCceeccCCcHHHHHHHhCCCCCccchhhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCc
Q psy16692 755 IYNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSD 822 (1149)
Q Consensus 755 ly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~ 822 (1149)
|||.+++|+|||+++|||||+++++++||+++.|++|+||+.||+|.+||++|+|+++|++.|+..+.
T Consensus 599 IyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~ed~f~l~F~i~~~~~g~ 666 (850)
T KOG0941|consen 599 IYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVEDVFDLTFQISQDDNGI 666 (850)
T ss_pred HhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchhhheeeEEEEEehhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999877763
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.2e-33 Score=318.60 Aligned_cols=274 Identities=29% Similarity=0.469 Sum_probs=223.5
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCC--------------CCcccccceEecC----CCCCcEEEEEeCCCccc
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESA--------------DKKSQSIPKRVKG----LASVSVVQACAGYSHCL 62 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~--------------~~~~~~~P~~V~~----l~~~~IvqVacG~~hs~ 62 (1149)
|||..|+++|++||.||+||.|..|+||.... ......+|..|+. ....++++++||+
T Consensus 110 acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~---- 185 (476)
T COG5184 110 ACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGW---- 185 (476)
T ss_pred ecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCC----
Confidence 79999999999999999999999999998761 1234567877776 2234799999999
Q ss_pred ccccccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcc----cccceEeccCCCCcEEEEEeCCCeeEEEecCceEEE
Q psy16692 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKS----QSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTC 138 (1149)
Q Consensus 63 ~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~----~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~ 138 (1149)
+++++++++|+||+||.+..+.++.+...+.. +.+|..+. ...|+++++|.+|.++||.+|++|+
T Consensus 186 --------e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~ 254 (476)
T COG5184 186 --------EISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYG 254 (476)
T ss_pred --------ceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEE
Confidence 99999999999999999999999888433332 24454444 4579999999999999999999999
Q ss_pred ecCCC--CCCCC---------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCC---CcccccE
Q psy16692 139 THKEN--GCGSD---------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSN---TTVTKPQ 198 (1149)
Q Consensus 139 wG~n~--qlG~~---------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~---~~~~~P~ 198 (1149)
||.+. |+|.+ ....|..|+||.+|+++ |+++|++|+||.|.+||||.++.. .....|.
T Consensus 255 ~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~a--l~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~ 332 (476)
T COG5184 255 WGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLA--LDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332 (476)
T ss_pred ecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEE--EcCCCeEEEeccchhcccccCcccccceeecccc
Confidence 99999 88875 22347889999999999 999999999999999999988221 1223455
Q ss_pred EecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC---CcccceEecCCCcCCccccccCccccccccC
Q psy16692 199 RVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS---VHKTPQLIHGPWIASPVAMTAGEDSLVSHSG 275 (1149)
Q Consensus 199 ~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~---~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~ 275 (1149)
....+.+..|.+|++|..|++++..+ |.+|+||.+..||||.++. ...+|+++. .
T Consensus 333 ~~~~~~~~~i~~is~ge~H~l~L~~~-G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls---------------------~ 390 (476)
T COG5184 333 YKQLLSGVTICSISAGESHSLILRKD-GTLYAFGRGDRGQLGIQEEITIDVSTPTKLS---------------------V 390 (476)
T ss_pred ccccCCCceEEEEecCcceEEEEecC-ceEEEecCCccccccCcccceeecCCccccc---------------------c
Confidence 55555667799999999999999999 9999999999999999984 444444433 1
Q ss_pred CcceEEEeecCCeEEEEEecCCC-CCCCcccccccccCc
Q psy16692 276 GLVVKKIYSGGDHSIVTVTKSSD-GVLSDDFRVLNPATQ 313 (1149)
Q Consensus 276 ~~~V~~IaaG~~hS~~l~~~~~~-~~~~~~~~~~~~~~~ 313 (1149)
..++..++||..|+++.+.+++. .|+-++++.++..++
T Consensus 391 ~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 391 AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred ccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence 23478899999999999999876 888888888875433
No 4
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.4e-32 Score=310.21 Aligned_cols=279 Identities=25% Similarity=0.407 Sum_probs=223.8
Q ss_pred ceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCC--CCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 5 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL--ASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 5 ~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l--~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
.|..+.+.-+.||+||+|..+|||+|..+ .....|+.++.. ....|+++|||+ .|+++|+.||.|
T Consensus 59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de-~~~~~P~~~~~~~~d~~~i~~~acGg------------~hsl~ld~Dg~l 125 (476)
T COG5184 59 KHTHLLVKMASVYSWGSNGMNELGLGNDE-TKVDRPQLNPFGRIDKASIIKIACGG------------NHSLGLDHDGNL 125 (476)
T ss_pred cchhhhhheeeeEEEecCcceeeccCCch-hcccCceecCcccccceeeEEeecCC------------ceEEeecCCCCE
Confidence 45557778899999999999999999965 347889888776 678899999999 999999999999
Q ss_pred EEEECCCCCCCCCCCC--------------CCcccccceEecc----CCCCcEEEEEeCCCeeEEEecCceEEEecCCC-
Q psy16692 83 FTWGGDTHGQLGLESA--------------DKKSQSIPKRVKG----LASVSVVQACAGYSHCLVLTSSGVVTCTHKEN- 143 (1149)
Q Consensus 83 y~WG~N~~GQLG~g~~--------------~~~~~~~P~~V~~----l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~- 143 (1149)
|+||.|..|+||.... ......+|..|+. ....+|++++||++++++|+++|.||.||...
T Consensus 126 yswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~ 205 (476)
T COG5184 126 YSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRC 205 (476)
T ss_pred EEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccc
Confidence 9999999999997651 2223567888876 33447999999999999999999999999866
Q ss_pred -CCCCC-----------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCC
Q psy16692 144 -GCGSD-----------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVN 205 (1149)
Q Consensus 144 -qlG~~-----------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~ 205 (1149)
.++.+ +...|+++++|..|.++ ++++|+||+||+|+.||||........ .+..+..+..
T Consensus 206 ~e~~~g~~~~s~k~~~~~~p~~v~~~~i~qla~G~dh~i~--lt~~G~vy~~Gs~qkgqlG~~~~e~~~-~~~lv~~~f~ 282 (476)
T COG5184 206 GELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGADHLIA--LTNEGKVYGWGSNQKGQLGRPTSERLK-LVVLVGDPFA 282 (476)
T ss_pred cccccccccccccceeeeeeeecCchheeeeccCCceEEE--EecCCcEEEecCCcccccCCchhhhcc-cccccCChhh
Confidence 22221 33579999999999999 999999999999999999987766544 3444443322
Q ss_pred -CCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCCCcccceEecCCCcCCccccccCccccccccCCcceEEEee
Q psy16692 206 -LPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYS 284 (1149)
Q Consensus 206 -~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~Iaa 284 (1149)
..|+.|+||.+|++|+.++ |+||+||.|.+||||.+ .+...|.....|. .........|..|++
T Consensus 283 i~~i~~vacG~~h~~al~~~-G~i~a~G~n~fgqlg~~-~~~~~~a~~tk~~-------------~~~~~~~~~i~~is~ 347 (476)
T COG5184 283 IRNIKYVACGKDHSLALDED-GEIYAWGVNIFGQLGAG-SDGEIGALTTKPN-------------YKQLLSGVTICSISA 347 (476)
T ss_pred hhhhhhcccCcceEEEEcCC-CeEEEeccchhcccccC-cccccceeecccc-------------ccccCCCceEEEEec
Confidence 3478999999999999999 99999999999999999 5333343333222 122344566888999
Q ss_pred cCCeEEEEEecCCC-CCCCcccccccccCcc
Q psy16692 285 GGDHSIVTVTKSSD-GVLSDDFRVLNPATQI 314 (1149)
Q Consensus 285 G~~hS~~l~~~~~~-~~~~~~~~~~~~~~~i 314 (1149)
|..|++++..++.. +.+.++..+++....+
T Consensus 348 ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~ 378 (476)
T COG5184 348 GESHSLILRKDGTLYAFGRGDRGQLGIQEEI 378 (476)
T ss_pred CcceEEEEecCceEEEecCCccccccCcccc
Confidence 99999999999876 8888888888776543
No 5
>KOG1427|consensus
Probab=99.97 E-value=1.2e-31 Score=285.71 Aligned_cols=258 Identities=24% Similarity=0.417 Sum_probs=211.4
Q ss_pred CCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCc
Q psy16692 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGE 81 (1149)
Q Consensus 2 cG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~ 81 (1149)
|-..|+++++-+|+.|+||.|..||||+|+. +....|+.|..|...+|++.|||. +|+++||++|+
T Consensus 65 ~~aaH~vli~megk~~~wGRNekGQLGhgD~--k~~e~Ptvi~gL~~~~iv~AA~Gr------------nHTl~ltdtG~ 130 (443)
T KOG1427|consen 65 CAAAHCVLIDMEGKCYTWGRNEKGQLGHGDM--KQRERPTVISGLSKHKIVKAAAGR------------NHTLVLTDTGQ 130 (443)
T ss_pred cchhhEEEEecccceeecccCccCccCccch--hhccCCchhhhhhhhhHHHHhhcc------------CcEEEEecCCc
Confidence 5678999999999999999999999999964 678899999999999999999999 99999999999
Q ss_pred EEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC-----------
Q psy16692 82 VFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD----------- 148 (1149)
Q Consensus 82 Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~----------- 148 (1149)
||++|.|.+||||+++......+ | .+....+.+|+.|+||.++++.|+..+.+...|-.. |+|++
T Consensus 131 v~afGeNK~GQlGlgn~~~~v~s-~-~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~ 208 (443)
T KOG1427|consen 131 VLAFGENKYGQLGLGNAKNEVES-T-PLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSS 208 (443)
T ss_pred EEEeccccccccccccccccccc-C-CCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhcccccc
Confidence 99999999999999984433222 2 233445678999999999999999999999999887 88885
Q ss_pred -----------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcc-----------------
Q psy16692 149 -----------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTV----------------- 194 (1149)
Q Consensus 149 -----------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~----------------- 194 (1149)
....|++++||.+|+++ ++++++||+||-|.||.|||.....+.
T Consensus 209 ~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtva--vd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~ 286 (443)
T KOG1427|consen 209 VRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVA--VDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPN 286 (443)
T ss_pred ceeeeecCCCccccccccceeeEEEeccCcceee--ecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcc
Confidence 33458999999999999 999999999999999999986433322
Q ss_pred ------------------------------cccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC
Q psy16692 195 ------------------------------TKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS 244 (1149)
Q Consensus 195 ------------------------------~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~ 244 (1149)
..|.++..+.+-++..+.||..|.++-.++ ...+||...+|.++-+..
T Consensus 287 ~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v~ad~--s~i~wg~~~~g~~lggp~ 364 (443)
T KOG1427|consen 287 AILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADS--SCISWGHAQYGELLGGPN 364 (443)
T ss_pred eeeecccceeecccceeEEeeccccCcccccCCCchhhcCCccCCCcCccceeeeecccc--cccccccccccccccCcc
Confidence 123444445555667888888888876655 889999988877655544
Q ss_pred ---CcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecCCC
Q psy16692 245 ---VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD 298 (1149)
Q Consensus 245 ---~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~ 298 (1149)
....|+.|. ...++.|-+|++|..||+++++..+.
T Consensus 365 ~Qkss~~Pk~v~-------------------~l~~i~v~~VamGysHs~vivd~t~e 402 (443)
T KOG1427|consen 365 GQKSSAAPKKVD-------------------MLEGIHVMGVAMGYSHSMVIVDRTDE 402 (443)
T ss_pred ccccccCccccc-------------------hhcceeccceeeccceEEEEEccccH
Confidence 555565544 34567889999999999999987654
No 6
>KOG1427|consensus
Probab=99.96 E-value=4.8e-29 Score=265.97 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=211.6
Q ss_pred CCcEEEEeCCCCCCCCCCCC-CCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCC
Q psy16692 13 CGEVFTWGGDTHGQLGLESA-DKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHG 91 (1149)
Q Consensus 13 dG~VysWG~N~~GQLG~g~~-~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~G 91 (1149)
-|++..+|.-..-+.|-... .......|.+...+.+++|.-|+.|. ...|+++|+-+|+.|+||+|..|
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~----------~aaH~vli~megk~~~wGRNekG 88 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGC----------AAAHCVLIDMEGKCYTWGRNEKG 88 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEeccc----------chhhEEEEecccceeecccCccC
Confidence 47888888777766665332 12356789999999999999999998 23899999999999999999999
Q ss_pred CCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC--------------CCCCeEE
Q psy16692 92 QLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD--------------PSQGVQS 155 (1149)
Q Consensus 92 QLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~--------------~~~~V~~ 155 (1149)
|||+++ ......|+.|..|...+|++.+||.+||++||++|.||.+|.|. |+|.+ ....|+.
T Consensus 89 QLGhgD--~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~ 166 (443)
T KOG1427|consen 89 QLGHGD--MKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTN 166 (443)
T ss_pred ccCccc--hhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCcccee
Confidence 999996 66778899999999999999999999999999999999999998 88885 4677999
Q ss_pred EEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCc-------------ccccEEecccCCCCEEEEEecCCeEEEEE
Q psy16692 156 NLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTT-------------VTKPQRVESLVNLPIALIACGANHSFVLS 222 (1149)
Q Consensus 156 Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~-------------~~~P~~V~~l~~~~V~~Ia~G~~hs~alt 222 (1149)
|+||.++++. |+..+.+.++|.-+||||||+..... ...|..|..+.+..|++++||.+||+|+.
T Consensus 167 v~cga~ftv~--l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd 244 (443)
T KOG1427|consen 167 VACGADFTVW--LSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVD 244 (443)
T ss_pred eccccceEEE--eecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeec
Confidence 9999999999 99999999999999999999875422 23467777888889999999999999999
Q ss_pred ecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEe
Q psy16692 223 KSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVT 294 (1149)
Q Consensus 223 ~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~ 294 (1149)
++ ++||+||.+.+|.||+.+. +..+|..++.- ...++--..+.||...|+.+..
T Consensus 245 ~n-krVysWGFGGyGRLGHaEqKDEmvpRlik~F-----------------d~~~rg~~~~~~g~t~Sl~v~e 299 (443)
T KOG1427|consen 245 KN-KRVYSWGFGGYGRLGHAEQKDEMVPRLIKVF-----------------DRNNRGPPNAILGYTGSLNVAE 299 (443)
T ss_pred CC-ccEEEeccccccccccccchhhHHHHHHHHh-----------------cCCCCCCcceeeecccceeecc
Confidence 98 9999999999999999999 99999888731 1123334557778777776654
No 7
>KOG0942|consensus
Probab=99.93 E-value=5.7e-27 Score=279.37 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=160.8
Q ss_pred cCcccCccccccccccccccccchhhhhhhhhhcccCCcCCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEeh
Q psy16692 612 QYFFPCPSCYTLALMEPRSTLTGTLKRASVIVCGLTGLVLSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATS 685 (1149)
Q Consensus 612 ~~~f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~ 685 (1149)
.-||+.|+..++.++|+. .+.......+.......+....+|||+ ||+||||+++ +++..+||+
T Consensus 603 e~PF~vPF~~RVklfq~l------la~dKq~~~~~~~F~~g~s~~~tIRRd-~iyeDAfd~f~p~~e~dlk~~iRVt--- 672 (1001)
T KOG0942|consen 603 EIPFFVPFEERVKLFQRL------LALDKQRHGGDGPFGMGFSPSATIRRD-HIYEDAFDAFSPKGEPDLKSSIRVT--- 672 (1001)
T ss_pred cCCeeechHHHHHHHHHH------HHHHHHhhcCCCCccCCCCccEEEehh-hhHHHHHHhcCccCCcccccceEEE---
Confidence 468888999999999764 222222222211122223367899999 9999999999 778889999
Q ss_pred hhHHHHHHhhcCCCCCcCCCCCCc--cccCCCcccc--------------ccceeecCCCeEEcCCCccc-----chhhH
Q psy16692 686 LASLILFTAMRNSSVDVFPDFPIV--AAYPKNGINH--------------YGITEYEETRSIWFSEDTFE-----DQNMC 744 (1149)
Q Consensus 686 e~~~~l~~~~~~~~~~~f~~f~ge--~~~d~gG~~~--------------yglf~~~~~~~~~~~~~s~~-----~~~~f 744 (1149)
|+++.|+ +|.|+||+|| ||+|..+++..+|+||+... .+.+|
T Consensus 673 -----------------fVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~~lLYPNp~~~~l~~~~~lkhy 735 (1001)
T KOG0942|consen 673 -----------------FVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETEDHLLYPNPTAAMLLDVDCLKHY 735 (1001)
T ss_pred -----------------EecccCccccCccCcccHHHHHHHHHHhhcCccccceeecccceecCCCCchhhhhhHHHHHH
Confidence 8999996 4559999999 99999999999999999753 35689
Q ss_pred HHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCC--CccchhhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCc
Q psy16692 745 FLIGTLCGLAIYNYTIINMPFPLALYKKILDEPI--LLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSD 822 (1149)
Q Consensus 745 ~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~--~l~DL~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~ 822 (1149)
+|+||++|||||+++++|+||+.+|.+||+|.+- +++||.++||++|++|.+|++|+++|+.| ++|+|++--+.+|+
T Consensus 736 ~FLGrllGK~iYE~iLvdvpFA~FFlaKllg~~~~vd~~dL~SlDPeLY~nLifLk~y~gddi~e-L~L~FtVv~~e~G~ 814 (1001)
T KOG0942|consen 736 YFLGRLLGKCIYEGILVDVPFAEFFLAKLLGTSNDVDLHDLASLDPELYKNLIFLKNYNGDDISE-LQLDFTVVNSELGE 814 (1001)
T ss_pred HHHHHHHHHHHHhcceecccHHHHHHHHHhCCCCCCChhhhcccCHHHHHHHHHHHhcCCCchhh-ccceEEEecccccc
Confidence 9999999999999999999999999999999986 89999999999999999999999888888 99999988888877
Q ss_pred hhhHHHHhhhcc
Q psy16692 823 DYFERLILIFKQ 834 (1149)
Q Consensus 823 ~~F~rLV~~~k~ 834 (1149)
...+.|++.-+.
T Consensus 815 ~~vVeLkPnGs~ 826 (1001)
T KOG0942|consen 815 RQVVELKPNGSK 826 (1001)
T ss_pred ceeEEeccCCcc
Confidence 765555554433
No 8
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.4e-25 Score=274.05 Aligned_cols=147 Identities=22% Similarity=0.353 Sum_probs=124.9
Q ss_pred CcCCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc---
Q psy16692 649 LVLSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH--- 719 (1149)
Q Consensus 649 ~~~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~--- 719 (1149)
...+|+++|+|||+ ++++||++++ +++++|++. |.||+|.|+||+.|
T Consensus 509 ~~~~~~l~I~VrRd-~vf~Dsy~~i~~~~~~~~k~~L~i~-----------------------F~~EeGiD~GGltrE~~ 564 (872)
T COG5021 509 KIFDPYLHIKVRRD-RVFEDSYREIMDESGDDLKKTLEIE-----------------------FVGEEGIDAGGLTREWL 564 (872)
T ss_pred cccCcceEEEEecc-cchHHHHHHHHHhchhhhcceEEEE-----------------------ecCcccccCCccchHHH
Confidence 46679999999999 9999999999 666779999 66677777777666
Q ss_pred -----------ccceee--cCCCeEEcCCCccc---chhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccch
Q psy16692 720 -----------YGITEY--EETRSIWFSEDTFE---DQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDL 783 (1149)
Q Consensus 720 -----------yglf~~--~~~~~~~~~~~s~~---~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL 783 (1149)
||+|++ ++..++|+||.+.. +.++|+|+||++|+||||+++||++||++||||||++|++++||
T Consensus 565 ~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~~s~~npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~fyKklL~~~~sl~Dl 644 (872)
T COG5021 565 FLLSKEMFNPDYGLFEYITEDLYTLPINPLSSINPEHLSYFKFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDL 644 (872)
T ss_pred HHHhHHhcCCcccceeeecccccccCcCccccCCHHHHHHHHHHHHHHHHHHHhcceeeecchHHHHHHHhCCCCchhhh
Confidence 666665 56667889999874 45689999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccC
Q psy16692 784 KDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMS 821 (1149)
Q Consensus 784 ~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~ 821 (1149)
+++||++|+||.|||+|+.++. ++++||++.-..++
T Consensus 645 ~s~Dpe~y~sLv~ll~~~~d~~--~l~l~Fsve~~~fg 680 (872)
T COG5021 645 ESLDPELYRSLVWLLNNDIDET--ILDLTFTVEDDSFG 680 (872)
T ss_pred hhcCHHHHHHHHHHHcCCCCcc--eeeeeEEEeecccC
Confidence 9999999999999999976654 68999995433333
No 9
>KOG0942|consensus
Probab=99.87 E-value=3.1e-22 Score=239.34 Aligned_cols=153 Identities=25% Similarity=0.431 Sum_probs=120.1
Q ss_pred eeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCchHHHHHHHHhcCCcccccCc
Q psy16692 936 DFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKP 1015 (1149)
Q Consensus 936 ~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~ 1015 (1149)
-++.+.||++||+.|+++|+. .+....+..+... .|... +...++||||+|+|||+++++.....|||..
T Consensus 599 ~IL~e~PF~vPF~~RVklfq~--lla~dKq~~~~~~-~F~~g-------~s~~~tIRRd~iyeDAfd~f~p~~e~dlk~~ 668 (1001)
T KOG0942|consen 599 CILKEIPFFVPFEERVKLFQR--LLALDKQRHGGDG-PFGMG-------FSPSATIRRDHIYEDAFDAFSPKGEPDLKSS 668 (1001)
T ss_pred HHHHcCCeeechHHHHHHHHH--HHHHHHHhhcCCC-CccCC-------CCccEEEehhhhHHHHHHhcCccCCcccccc
Confidence 578899999999999999993 2211111111110 11111 1245899999999999999999999999999
Q ss_pred eEEecCCCcccCCccccc-----CccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceeecCCchhhhhhhhhhccc
Q psy16692 1016 LKVNDTSPIYLAPQVKFR-----GEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIGK 1090 (1149)
Q Consensus 1016 l~v~~~~~~~~~~~~~f~-----~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~~l~g~ 1090 (1149)
++| +|+ .|+|||+||++|||++.|+|+.|||+||+|+.+++ +++|+||+...
T Consensus 669 iRV------------tfVne~G~~EaGIDGGGIfkEFLtel~ktaFdpn~GlF~~T~~-~lLYPNp~~~~---------- 725 (1001)
T KOG0942|consen 669 IRV------------TFVNEHGVDEAGIDGGGIFKEFLTELLKTAFDPNYGLFKETED-HLLYPNPTAAM---------- 725 (1001)
T ss_pred eEE------------EEecccCccccCccCcccHHHHHHHHHHhhcCccccceeeccc-ceecCCCCchh----------
Confidence 999 666 47999999999999999999999999999999876 78888884211
Q ss_pred cccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc-cCCCC
Q psy16692 1091 EYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV-RFPAR 1147 (1149)
Q Consensus 1091 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~-~fP~a 1147 (1149)
+ ...+.+++|.|+|+++|||||++++ +.|+|
T Consensus 726 --l------------------------~~~~~lkhy~FLGrllGK~iYE~iLvdvpFA 757 (1001)
T KOG0942|consen 726 --L------------------------LDVDCLKHYYFLGRLLGKCIYEGILVDVPFA 757 (1001)
T ss_pred --h------------------------hhhHHHHHHHHHHHHHHHHHHhcceecccHH
Confidence 0 1134789999999999999999999 88876
No 10
>KOG4427|consensus
Probab=99.87 E-value=5.1e-22 Score=231.33 Aligned_cols=195 Identities=17% Similarity=0.285 Sum_probs=154.2
Q ss_pred eccCcccCccccccccccccccccchhhhhhhhhhcccC--CcCCce-EEEEEeCCCchhHhHhhhh------ccCCceE
Q psy16692 610 CDQYFFPCPSCYTLALMEPRSTLTGTLKRASVIVCGLTG--LVLSQF-YVLQRDRTFELVGITVLLL------VVPYPLR 680 (1149)
Q Consensus 610 C~~~~f~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-l~l~VrR~~~l~~ds~~~l------~l~~~l~ 680 (1149)
-..-|-+.|...++.+++.. -....+..++.. ...|.. ..|.|||+ +++||.|+|| .+|..+|
T Consensus 671 l~~mpHviP~edRv~lFR~f-------VqkdKa~~~lv~ts~a~p~~~t~IvvrR~-rivEDGf~qL~~l~~~alKs~Ir 742 (1096)
T KOG4427|consen 671 LTKMPHVIPHEDRVLLFREF-------VQKDKASRGLVETSDASPARSTEIVVRRG-RIVEDGFQQLNSLGSPALKSVIR 742 (1096)
T ss_pred eccCCcccChHHHHHHHHHH-------HhhhHHhhcccccccCCccceeEEEEEcc-cchhhHHHHHHhccchhhhceEE
Confidence 33456677777777777431 111111222222 222333 89999999 9999999999 6788889
Q ss_pred EEEehhhHHHHHHhhcCCCCCcCCCCCCcc--ccCCCcccc--------------ccceeecC-CCeEEcCCCcccchh-
Q psy16692 681 MLATSLASLILFTAMRNSSVDVFPDFPIVA--AYPKNGINH--------------YGITEYEE-TRSIWFSEDTFEDQN- 742 (1149)
Q Consensus 681 v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~--~~d~gG~~~--------------yglf~~~~-~~~~~~~~~s~~~~~- 742 (1149)
|+ |+|+.|.+ |.|.+|+|| ++||.... ++.+|++|.|..+++
T Consensus 743 Vk--------------------FVNeqGl~EAGiDqdGvfKEFLeeiiKkvFdp~lnLFstTs~d~~LyPSPts~~~en~ 802 (1096)
T KOG4427|consen 743 VK--------------------FVNEQGLDEAGIDQDGVFKEFLEEIIKKVFDPELNLFSTTSTDRRLYPSPTSYHHENH 802 (1096)
T ss_pred EE--------------------EecccCCcccccCccchHHHHHHHHHHHHhcccccccccCCCCceecCCchhhhhhch
Confidence 88 99999964 559999999 88887654 889999999976554
Q ss_pred --hHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCC--CccchhhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhh
Q psy16692 743 --MCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPI--LLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYL 818 (1149)
Q Consensus 743 --~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~--~l~DL~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws 818 (1149)
.|+|+||++|||+|+|+++|+||+.+|..+|||.-- .+|+|.++|||+||||.+++.| ++|+.| +||||+
T Consensus 803 lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs~LDpElYrnLtfvKhY-dgd~~d-L~LtfS---- 876 (1096)
T KOG4427|consen 803 LQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELSSLDPELYRNLTFVKHY-DGDLKD-LCLTFS---- 876 (1096)
T ss_pred hHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhccccCHHHHhhhhHHHhh-cccHhh-heeeeE----
Confidence 799999999999999999999999999999999865 7999999999999999999999 568888 999999
Q ss_pred ccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 819 LMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 819 ~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
.+++ ..+++++..|++++..
T Consensus 877 -vded-------fmGkis~~eL~PgGkt 896 (1096)
T KOG4427|consen 877 -VDED-------FMGKISTIELKPGGKT 896 (1096)
T ss_pred -echh-------hccceeEEEeccCCcc
Confidence 5554 5677788888876543
No 11
>KOG0783|consensus
Probab=99.84 E-value=6e-21 Score=224.42 Aligned_cols=206 Identities=28% Similarity=0.458 Sum_probs=179.1
Q ss_pred EEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCC--CCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEE
Q psy16692 9 ALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL--ASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWG 86 (1149)
Q Consensus 9 aLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l--~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG 86 (1149)
+++.-..||+||.|.+.-||+|.. .....|..|..+ .|.-+.||+.|. .|++++++.|+||++|
T Consensus 137 ~~d~pndvy~wG~N~N~tLGign~--~~~~~Pe~Vdlf~~Sg~~~~qV~l~k------------fHSvfl~~kgqvY~cG 202 (1267)
T KOG0783|consen 137 VLDLPNDVYGWGTNVNNTLGIGNG--KEPSSPERVDLFKTSGQLFSQVQLSK------------FHSVFLTEKGQVYVCG 202 (1267)
T ss_pred ccCCccceeEecccccccccccCC--CCCCChHHhHHHHhccHHHHHHHHhh------------ceeeEecCCCcEEEec
Confidence 556678999999999999999985 356678887765 466688999999 9999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC----------------
Q psy16692 87 GDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD---------------- 148 (1149)
Q Consensus 87 ~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~---------------- 148 (1149)
-+.-|.||.|+ ......|+.|+.+.+.+|.+|++...|+++||..|.||+||.|. |+|..
T Consensus 203 hG~GGRlG~gd--eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r 280 (1267)
T KOG0783|consen 203 HGAGGRLGFGD--EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARR 280 (1267)
T ss_pred cCCCCccCcCc--ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHh
Confidence 99999999996 66778999999999999999999999999999999999999999 99974
Q ss_pred --CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCC
Q psy16692 149 --PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVS 226 (1149)
Q Consensus 149 --~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G 226 (1149)
....|+.|++|..|+++ -|+ -.||+||.|. ||||.++....++.|+.+-.+ ...|..|+|...-|++++.. |
T Consensus 281 ~kg~~~iIgvaAg~~hsVa--wt~-~~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~-~~~v~~v~a~~~ATVc~~~~-~ 354 (1267)
T KOG0783|consen 281 IKGFKQIIGVAAGKSHSVA--WTD-TDVYSWGLNN-GQLGISDNISVVTTPRRLAGL-LSPVIHVVATTRATVCLLQN-N 354 (1267)
T ss_pred hcchhhhhhhhcccceeee--eec-ceEEEecccC-ceecCCCCCceeecchhhccc-ccceEEEEecCccEEEEecC-C
Confidence 22368889999999999 764 5799999996 999999988888889776443 45799999999999999987 9
Q ss_pred cEEEEecCCC
Q psy16692 227 RLYAFGIGSA 236 (1149)
Q Consensus 227 ~Vy~wG~N~~ 236 (1149)
.+|++-+-..
T Consensus 355 ~i~~~ady~~ 364 (1267)
T KOG0783|consen 355 SIIAFADYNQ 364 (1267)
T ss_pred cEEEEecccc
Confidence 9999986443
No 12
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.4e-21 Score=235.33 Aligned_cols=156 Identities=31% Similarity=0.515 Sum_probs=120.3
Q ss_pred ceeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCchHHHHHHHHhcCCcccccC
Q psy16692 935 RDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKK 1014 (1149)
Q Consensus 935 ~~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~ 1014 (1149)
...+|++| ...|..+.+.+...-+....+.. ++.... ......+++.|+|||++|++|+++++...++.++|+
T Consensus 470 ~~~~~~~~----~g~~~~~~~~~~~r~~~~~r~~l-~~~~~~--~~~~~~~~l~I~VrRd~vf~Dsy~~i~~~~~~~~k~ 542 (872)
T COG5021 470 TLTKNDSR----LGSFISLNKLDIRRIKEDKRRKL-FYSLKQ--KAKIFDPYLHIKVRRDRVFEDSYREIMDESGDDLKK 542 (872)
T ss_pred eeeecCCC----CchhhhhchhHHHHHHHHHHHHH-HHHHhh--hccccCcceEEEEecccchHHHHHHHHHhchhhhcc
Confidence 57788887 45555555433333333332222 221111 123467899999999999999999999999999999
Q ss_pred ceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceee-cCCchhhhhhhhhhcccccc
Q psy16692 1015 PLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIW-FSEDTFEDQNMYFLIGKEYV 1093 (1149)
Q Consensus 1015 ~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~ 1093 (1149)
.|+| +|.||+|+|+||++||||+++++++|+|+||+|.+..++.+.| +|+
T Consensus 543 ~L~i------------~F~~EeGiD~GGltrE~~~lLs~~~Fnp~y~LF~y~t~d~~~~~~n~----------------- 593 (872)
T COG5021 543 TLEI------------EFVGEEGIDAGGLTREWLFLLSKEMFNPDYGLFEYITEDLYTLPINP----------------- 593 (872)
T ss_pred eEEE------------EecCcccccCCccchHHHHHHhHHhcCCcccceeeecccccccCcCc-----------------
Confidence 9999 9999999999999999999999999999999999987766544 343
Q ss_pred ccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc---cCCCC
Q psy16692 1094 PCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV---RFPAR 1147 (1149)
Q Consensus 1094 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~---~fP~a 1147 (1149)
.|.+ .++++++|+|+|++|||||||+++ +||-+
T Consensus 594 -------~s~~--------------npe~L~yf~fiGrvIGkaIyd~~~LD~~F~~~ 629 (872)
T COG5021 594 -------LSSI--------------NPEHLSYFKFLGRVIGKAIYDSRILDVQFSKA 629 (872)
T ss_pred -------cccC--------------CHHHHHHHHHHHHHHHHHHHhcceeeecchHH
Confidence 3332 378999999999999999999999 77654
No 13
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.83 E-value=1.1e-20 Score=219.26 Aligned_cols=135 Identities=27% Similarity=0.483 Sum_probs=121.6
Q ss_pred EEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc----------
Q psy16692 656 VLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH---------- 719 (1149)
Q Consensus 656 ~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~---------- 719 (1149)
+|+|||+ +|++|+++++ +++++++|. |.||.|.|+||++|
T Consensus 2 ~i~v~R~-~i~~~~~~~l~~~~~~~l~~~l~V~-----------------------F~gE~g~D~GG~~rE~~~~l~~el 57 (352)
T cd00078 2 KITVRRD-RILEDALRQLSKVSSSDLKKVLEVE-----------------------FVGEEGIDAGGVTREFFTLVSKEL 57 (352)
T ss_pred eEEEECC-cHHHHHHHHHHhcCHHHhcCceEEE-----------------------ECCCCccCCCcchHHHHHHHHHHH
Confidence 6899999 9999999999 577899999 78999999999998
Q ss_pred ----ccceeecCC--CeEEcCCCccc---chhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhhhCHHH
Q psy16692 720 ----YGITEYEET--RSIWFSEDTFE---DQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDLSPTL 790 (1149)
Q Consensus 720 ----yglf~~~~~--~~~~~~~~s~~---~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ldp~l 790 (1149)
+|||+..++ +.+|+||.+.. +.++|+++|+++|+||+|+..++++||++|||+|+|.+++++||+++||++
T Consensus 58 ~~~~~~lF~~~~~~~~~~~~~p~~~~~~~~~~~f~~~G~lig~al~~~~~l~l~f~~~f~k~L~g~~~t~~Dl~~iD~~~ 137 (352)
T cd00078 58 FNPSYGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPEL 137 (352)
T ss_pred cCCCCCCeeecCCCCceEEeCCCcccchhHHHHHHHHHHHHHHHHHcCceeCCCCCHHHHHHHhCCCCCHHHHHHhCHHH
Confidence 788887665 88999999875 567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhhcceehhh
Q psy16692 791 AKSLQDILDYREPDLEDVFGITFRNW 816 (1149)
Q Consensus 791 ~~sL~~ll~~~~~dv~~~~~ltF~~w 816 (1149)
|++|++|++++.+ .+.++|+|+..
T Consensus 138 ~~sl~~l~~~~~~--~~~l~l~F~~~ 161 (352)
T cd00078 138 YKSLKELLDNDGD--EDDLELTFTIE 161 (352)
T ss_pred HHHHHHHHhcCCc--hhhhcceeEEE
Confidence 9999999999653 34588999843
No 14
>KOG0939|consensus
Probab=99.81 E-value=1.5e-20 Score=220.58 Aligned_cols=157 Identities=17% Similarity=0.219 Sum_probs=130.4
Q ss_pred CceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc------
Q psy16692 652 SQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH------ 719 (1149)
Q Consensus 652 ~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~------ 719 (1149)
.+.+.+.|+|+ .+++||++++ .++..+.|. |.||||.|+||+.|
T Consensus 361 ~~~~~v~v~R~-~v~~~S~~~~~~~s~~e~~~rl~I~-----------------------f~gEEg~D~gG~~rEw~~ll 416 (720)
T KOG0939|consen 361 SEKLAVLVRRA-LVLEDSFRALLYKSPEELKTRLEVT-----------------------FQGEEGSDAGGVTREWLQLL 416 (720)
T ss_pred CCcceEEEeHH-HHHHHHHHHHHhCCHHHHhcceEEE-----------------------EecccccccchHHHHHHHHH
Confidence 56789999999 9999999999 777888888 78888888888887
Q ss_pred --------ccceeecCCC--eEEcCCCccc---chhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhhh
Q psy16692 720 --------YGITEYEETR--SIWFSEDTFE---DQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDL 786 (1149)
Q Consensus 720 --------yglf~~~~~~--~~~~~~~s~~---~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~l 786 (1149)
|++|+...++ ++.+||+|.. ++.||+|+||++|||||++.+++++|++.|||++||.++++.|+++.
T Consensus 417 ~r~ifnp~~alf~~~~~d~tt~~pn~~s~~np~hLs~fkf~GriigKal~d~ql~~c~ftrsfyk~ilG~~v~~~d~es~ 496 (720)
T KOG0939|consen 417 SREIFNPRYALFTTVGSDQTTFHPNPNSYVNPEHLSYFKFVGRIIGKALFDGQLLECYFTRSFYKHILGLPVTYHDMESA 496 (720)
T ss_pred HHHHcCCCcceEEEcCCCceEEeeCCcccCChhhhhHHHhhHHHHHHHHhcchhhhheeeHHHHhhccCCceeeeehhhc
Confidence 7777764444 5679999764 45689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccE
Q psy16692 787 SPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQC 835 (1149)
Q Consensus 787 dp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~ 835 (1149)
||++|++|.||+++| +.+++++||+..-..++......|++...++
T Consensus 497 DP~y~k~l~~il~nd---is~~l~ltfs~e~~~~g~~~~~eL~p~G~~i 542 (720)
T KOG0939|consen 497 DPEYYKSLVWILKND---ISDTLELTFSEEDDEFGVESVVELKPGGAKI 542 (720)
T ss_pred ChHHhhceeehhcCC---cccceeEEEEEeeccccccceeecccCCCce
Confidence 999999999999985 4555899999665555544444444444443
No 15
>KOG4427|consensus
Probab=99.79 E-value=4.2e-19 Score=207.26 Aligned_cols=183 Identities=21% Similarity=0.366 Sum_probs=135.4
Q ss_pred CCCCCcccccccccccchHHHHHHHhcCCCCCCcceeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCC
Q psy16692 901 KVAYTAFYMPDLATVCDIRIDYFRWISGRPNGSTRDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNP 980 (1149)
Q Consensus 901 ~~~~~~Fy~~~l~~~~~~~~d~~~w~~~~~~~~~~~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1149)
+-|...+-++++. -.-+..|+.+=. +.....+...|.++|++.|+.+|+ ...|-+.+.+.- .....
T Consensus 640 Fta~d~WL~pevk-Ps~f~~e~ek~~-----~~a~lll~~mpHviP~edRv~lFR--~fVqkdKa~~~l----v~ts~-- 705 (1096)
T KOG4427|consen 640 FTASDHWLIPEVK-PSAFAAELEKVL-----PTADLLLTKMPHVIPHEDRVLLFR--EFVQKDKASRGL----VETSD-- 705 (1096)
T ss_pred CCcchhhcCCCCC-hhHHHHHHHhhc-----ccceeEeccCCcccChHHHHHHHH--HHHhhhHHhhcc----ccccc--
Confidence 4455555666553 222444443322 112467778999999999999999 222222221110 01111
Q ss_pred CCCCCceEEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccC-----ccccCCCchHHHHHHHHHHHh
Q psy16692 981 HTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRG-----EEAEDAGGVRREFLMLLLKEI 1055 (1149)
Q Consensus 981 ~~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~-----E~g~d~GG~~~Eff~ll~~e~ 1055 (1149)
.++.....|+|||++|+||.++||++++...||.-++| +|++ |+|||.|||.|||+..+.|..
T Consensus 706 a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrV------------kFVNeqGl~EAGiDqdGvfKEFLeeiiKkv 773 (1096)
T KOG4427|consen 706 ASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRV------------KFVNEQGLDEAGIDQDGVFKEFLEEIIKKV 773 (1096)
T ss_pred CCccceeEEEEEcccchhhHHHHHHhccchhhhceEEE------------EEecccCCcccccCccchHHHHHHHHHHHH
Confidence 11223368999999999999999999999999999999 8874 688999999999999999999
Q ss_pred cCCCCCceEEccCCceeecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHH
Q psy16692 1056 LDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGL 1135 (1149)
Q Consensus 1056 ~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~ 1135 (1149)
|||++++|+.+..++.+|++|.|. ...+++++|+|+||++||
T Consensus 774 Fdp~lnLFstTs~d~~LyPSPts~--------------------------------------~~en~lqlfeFvGrmlGK 815 (1096)
T KOG4427|consen 774 FDPELNLFSTTSTDRRLYPSPTSY--------------------------------------HHENHLQLFEFVGRMLGK 815 (1096)
T ss_pred hcccccccccCCCCceecCCchhh--------------------------------------hhhchhHHHHHHHHHHHH
Confidence 999999999998778877777432 235689999999999999
Q ss_pred HHhcCcc-cCCCC
Q psy16692 1136 AIYNYTV-RFPAR 1147 (1149)
Q Consensus 1136 aiy~~~~-~fP~a 1147 (1149)
|+|+|++ +.|+|
T Consensus 816 AvYEGIvvDv~fa 828 (1096)
T KOG4427|consen 816 AVYEGIVVDVPFA 828 (1096)
T ss_pred HHhcceEEecccH
Confidence 9999999 88876
No 16
>KOG0783|consensus
Probab=99.78 E-value=1.9e-18 Score=203.72 Aligned_cols=212 Identities=24% Similarity=0.356 Sum_probs=163.9
Q ss_pred CCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCc
Q psy16692 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGE 81 (1149)
Q Consensus 2 cG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~ 81 (1149)
.|..|++++++.|+||++|.+..|.||.|.. .....|+.|+.+.+.++.||++.. .|+++||++|-
T Consensus 184 l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde--q~~~iPkrV~gL~gh~~~qisvs~------------~HslvLT~~g~ 249 (1267)
T KOG0783|consen 184 LSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE--QYNFIPKRVPGLIGHKVIQISVSH------------THSLVLTKFGS 249 (1267)
T ss_pred HhhceeeEecCCCcEEEeccCCCCccCcCcc--cccccccccccccccceEEEEeec------------ceeEEEeecce
Confidence 4789999999999999999999999999963 588899999999999999999999 99999999999
Q ss_pred EEEEECCCCCCCCCCCCCCcccccceEeccC--CCC-cEEEEEeCCCeeEEEecCceEEEecCCC-CCCCC---------
Q psy16692 82 VFTWGGDTHGQLGLESADKKSQSIPKRVKGL--ASV-SVVQACAGYSHCLVLTSSGVVTCTHKEN-GCGSD--------- 148 (1149)
Q Consensus 82 Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l--~~~-~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-qlG~~--------- 148 (1149)
||+||.|.++|||+.+ +......|.+|... .+. .|+.|+||..|+++-|+ -.||+||.|. |+|.+
T Consensus 250 Vys~GlN~~hqLG~~~-~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~-~~VY~wGlN~GQlGi~~n~~~Vt~P 327 (1267)
T KOG0783|consen 250 VYSWGLNGSHQLGLSN-DELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTD-TDVYSWGLNNGQLGISDNISVVTTP 327 (1267)
T ss_pred EEEeecCcccccCCcC-chhhcCchhhhhhHhhcchhhhhhhhcccceeeeeec-ceEEEecccCceecCCCCCceeecc
Confidence 9999999999999987 34445567666653 343 68999999999999984 5799999999 99986
Q ss_pred -----CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecc----cCCCCEEEEEecCCeEE
Q psy16692 149 -----PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVES----LVNLPIALIACGANHSF 219 (1149)
Q Consensus 149 -----~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~----l~~~~V~~Ia~G~~hs~ 219 (1149)
....|..|.|....+++ ++.+|.+|++-+-..-.+- .+.... .-.+|.. +....+++-.+....-+
T Consensus 328 r~l~~~~~~v~~v~a~~~ATVc--~~~~~~i~~~ady~~~k~~--~n~~~l-ks~~V~gg~l~~~~~~~~k~~a~~~kll 402 (1267)
T KOG0783|consen 328 RRLAGLLSPVIHVVATTRATVC--LLQNNSIIAFADYNQVKLP--FNVDFL-KSLKVTGGPLSLTRFNVRKLLASENKLL 402 (1267)
T ss_pred hhhcccccceEEEEecCccEEE--EecCCcEEEEecccceecC--cchhcc-ceeEEecCccchhhhhhhhcchhhhhee
Confidence 23457778888888888 8889999998764322221 111111 1112211 01123455556666677
Q ss_pred EEEecCCcEEEEecCC
Q psy16692 220 VLSKSVSRLYAFGIGS 235 (1149)
Q Consensus 220 alt~~~G~Vy~wG~N~ 235 (1149)
++++. |+||.|-.+.
T Consensus 403 ~lte~-g~Vy~w~s~n 417 (1267)
T KOG0783|consen 403 VLTEL-GEVYEWDSKN 417 (1267)
T ss_pred eeccC-CeEEEEecCC
Confidence 88888 9999999654
No 17
>KOG1428|consensus
Probab=99.78 E-value=2.4e-18 Score=207.24 Aligned_cols=216 Identities=24% Similarity=0.347 Sum_probs=155.2
Q ss_pred CCCceEE-EEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 2 TGLWHSL-ALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 2 cG~~Hsl-aLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
||..|.. .++++|++|..|-... ........+..+.++-|.++|-|. .|.++++.+|
T Consensus 575 ~~s~~VY~~vSenGkifM~G~~tm----------~~n~SSqmln~L~~~~isslAlGK------------sH~~av~rNG 632 (3738)
T KOG1428|consen 575 CASGHVYGYVSENGKIFMGGLHTM----------RVNVSSQMLNGLDNVMISSLALGK------------SHGVAVTRNG 632 (3738)
T ss_pred eeeeEEEEEEccCCeEEeecceeE----------EecchHHHhhccccceeehhhccc------------cceeEEEeCC
Confidence 6666665 5688999998874321 112234567788999999999999 9999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEecc-------------CCCCcEEEEEeCCCee----EEEe--cCceEEEecC
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKG-------------LASVSVVQACAGYSHC----LVLT--SSGVVTCTHK 141 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~-------------l~~~~I~~Ia~G~~hs----~aLT--~~G~Vy~wG~ 141 (1149)
.||+||.|+.||+|.-. +......|..-.- +.+.+-+...||.-.. +.-. -.|.+-.+|.
T Consensus 633 ~l~T~GlNN~~QCGRVE-s~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~ 711 (3738)
T KOG1428|consen 633 HLFTWGLNNMNQCGRVE-STSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGV 711 (3738)
T ss_pred eEEEEecCCcccccccc-cccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCC
Confidence 99999999999999754 2222222221110 1111222222222111 1110 1233332322
Q ss_pred CC-------------------CCCCC---------------------------CCCCeEEEEecCCeeEEEEeCCCCcEE
Q psy16692 142 EN-------------------GCGSD---------------------------PSQGVQSNLVQDSHTTITSLNSPGELY 175 (1149)
Q Consensus 142 n~-------------------qlG~~---------------------------~~~~V~~Is~G~~hs~a~~Lt~~G~Vy 175 (1149)
.. |-|.. ...++++|+||..|+++ |.++|+||
T Consensus 712 GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVl--L~sd~~Vf 789 (3738)
T KOG1428|consen 712 GESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVL--LASDRRVF 789 (3738)
T ss_pred CcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEE--EecCCcEE
Confidence 22 22210 23568999999999999 99999999
Q ss_pred EEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC
Q psy16692 176 TWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS 244 (1149)
Q Consensus 176 swG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~ 244 (1149)
+||.|.+||||+|+..... .|+.|..+.+..+++|++|.+||++...+ |.||+||.-..||||.+-.
T Consensus 790 TFG~~~HGQLG~GDt~Sk~-~Pq~V~~~~~t~~vQVaAGSNHT~l~~~D-GsVFTFGaF~KGQL~RP~~ 856 (3738)
T KOG1428|consen 790 TFGSNCHGQLGVGDTLSKN-TPQQVILPSDTVIVQVAAGSNHTILRAND-GSVFTFGAFGKGQLARPAG 856 (3738)
T ss_pred EecCCcccccCcCccccCC-CcceEEcCCCCceEEEecCCCceEEEecC-CcEEEeccccCccccCccc
Confidence 9999999999999998877 89999999999999999999999999999 9999999999999997765
No 18
>KOG0939|consensus
Probab=99.77 E-value=4.9e-19 Score=208.08 Aligned_cols=140 Identities=30% Similarity=0.515 Sum_probs=118.7
Q ss_pred ceeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCchHHHHHHHHhcCCcccccC
Q psy16692 935 RDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKK 1014 (1149)
Q Consensus 935 ~~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~ 1014 (1149)
.+.+.++|=++++..|.++|+.+-+. ++ +.++.+.+.|+|+.++||+++++...+++++|+
T Consensus 331 f~ll~~~~~ll~F~~Kr~yf~r~L~~--~~-----------------~~~~~~~v~v~R~~v~~~S~~~~~~~s~~e~~~ 391 (720)
T KOG0939|consen 331 FSLLLKNPMLLDFDNKRKYFKRELRK--EH-----------------ASSEKLAVLVRRALVLEDSFRALLYKSPEELKT 391 (720)
T ss_pred hhhheecCcceecccHHHHHHHHHHH--hh-----------------ccCCcceEEEeHHHHHHHHHHHHHhCCHHHHhc
Confidence 36677899999999999999933221 11 114667899999999999999999999999999
Q ss_pred ceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceeecCCchhhhhhhhhhccccccc
Q psy16692 1015 PLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVP 1094 (1149)
Q Consensus 1015 ~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 1094 (1149)
++.| +|.||||+|+|||+||||++|++++|||.|++|....+++..
T Consensus 392 rl~I------------~f~gEEg~D~gG~~rEw~~ll~r~ifnp~~alf~~~~~d~tt---------------------- 437 (720)
T KOG0939|consen 392 RLEV------------TFQGEEGSDAGGVTREWLQLLSREIFNPRYALFTTVGSDQTT---------------------- 437 (720)
T ss_pred ceEE------------EEecccccccchHHHHHHHHHHHHHcCCCcceEEEcCCCceE----------------------
Confidence 9999 999999999999999999999999999999999998776432
Q ss_pred cccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc
Q psy16692 1095 CTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV 1142 (1149)
Q Consensus 1095 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~ 1142 (1149)
+.|||.|.+ .++|+++|+|+||++|||||++.+
T Consensus 438 -~~pn~~s~~--------------np~hLs~fkf~GriigKal~d~ql 470 (720)
T KOG0939|consen 438 -FHPNPNSYV--------------NPEHLSYFKFVGRIIGKALFDGQL 470 (720)
T ss_pred -EeeCCcccC--------------ChhhhhHHHhhHHHHHHHHhcchh
Confidence 234455554 378999999999999999999887
No 19
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.73 E-value=5.8e-18 Score=196.64 Aligned_cols=110 Identities=35% Similarity=0.692 Sum_probs=98.9
Q ss_pred EEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEcc
Q psy16692 988 EVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYE 1067 (1149)
Q Consensus 988 ~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~ 1067 (1149)
+|+|||++|++||++++.+.++.+++++++| +|.||+|+|+||++||||.++++|+++|++|||..++
T Consensus 2 ~i~v~R~~i~~~~~~~l~~~~~~~l~~~l~V------------~F~gE~g~D~GG~~rE~~~~l~~el~~~~~~lF~~~~ 69 (352)
T cd00078 2 KITVRRDRILEDALRQLSKVSSSDLKKVLEV------------EFVGEEGIDAGGVTREFFTLVSKELFNPSYGLFRYTP 69 (352)
T ss_pred eEEEECCcHHHHHHHHHHhcCHHHhcCceEE------------EECCCCccCCCcchHHHHHHHHHHHcCCCCCCeeecC
Confidence 5899999999999999999988999999999 9999999999999999999999999999999999988
Q ss_pred C-CceeecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc-cCC
Q psy16692 1068 E-TRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV-RFP 1145 (1149)
Q Consensus 1068 ~-~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~-~fP 1145 (1149)
+ .+.+|++|.+. ..++++++|+++|+++|+||+++.+ ++|
T Consensus 70 ~~~~~~~~~p~~~--------------------------------------~~~~~~~~f~~~G~lig~al~~~~~l~l~ 111 (352)
T cd00078 70 DDSGLLYPNPSSF--------------------------------------ADEDHLKLFRFLGRLLGKALYEGRLLDLP 111 (352)
T ss_pred CCCceEEeCCCcc--------------------------------------cchhHHHHHHHHHHHHHHHHHcCceeCCC
Confidence 7 68899998321 1135789999999999999999999 555
Q ss_pred CC
Q psy16692 1146 AR 1147 (1149)
Q Consensus 1146 ~a 1147 (1149)
++
T Consensus 112 f~ 113 (352)
T cd00078 112 FS 113 (352)
T ss_pred CC
Confidence 53
No 20
>KOG1428|consensus
Probab=99.67 E-value=6.7e-16 Score=186.62 Aligned_cols=242 Identities=21% Similarity=0.307 Sum_probs=167.0
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEe--eCC
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALN--DCG 80 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt--~~G 80 (1149)
|+...++-+.+|+||.-|.... +|+-.+.......| + ..+|++|+.|- +-++++. .+|
T Consensus 487 ~RE~A~iqa~sGKvYYaGn~t~--~Gl~e~G~nWmEL~--l----~~~IVq~SVG~------------D~~~~~~~A~~G 546 (3738)
T KOG1428|consen 487 TREMAFIQARSGKVYYAGNGTR--FGLFETGNNWMELC--L----PEPIVQISVGI------------DTIMFRSGAGHG 546 (3738)
T ss_pred chhhhhhhhcCccEEEecCccE--EeEEccCCceEEec--C----CCceEEEEecc------------chhheeeccCcc
Confidence 4455566688999999886543 55544321122222 2 24799999999 4444433 445
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC-------CCCCC-CCCC
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN-------GCGSD-PSQG 152 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-------qlG~~-~~~~ 152 (1149)
-++.-|+... .| ...+..| -...+|+++.+...---.++++|++|..|... |+-.+ .+.-
T Consensus 547 ~I~~v~D~k~--~~-----~~Rr~~P-----~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~~n~SSqmln~L~~~~ 614 (3738)
T KOG1428|consen 547 WIASVDDKKR--NG-----RLRRLVP-----SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMRVNVSSQMLNGLDNVM 614 (3738)
T ss_pred eEEeccCccc--cc-----chhhcCC-----CCcceeEEEeeeeEEEEEEccCCeEEeecceeEEecchHHHhhccccce
Confidence 5555553211 00 1111222 23347888766655556678999999999866 22222 5566
Q ss_pred eEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccc------------------------------------
Q psy16692 153 VQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTK------------------------------------ 196 (1149)
Q Consensus 153 V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~------------------------------------ 196 (1149)
|.+++.|..|+++ ++.+|.||+||.|..||+|.-.+......
T Consensus 615 isslAlGKsH~~a--v~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~ 692 (3738)
T KOG1428|consen 615 ISSLALGKSHGVA--VTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSAR 692 (3738)
T ss_pred eehhhccccceeE--EEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhccccccc
Confidence 8899999999999 99999999999999999985321110000
Q ss_pred --------------------------------------------------------------cEEec---ccCCCCEEEE
Q psy16692 197 --------------------------------------------------------------PQRVE---SLVNLPIALI 211 (1149)
Q Consensus 197 --------------------------------------------------------------P~~V~---~l~~~~V~~I 211 (1149)
|.+|. ..-+.++.+|
T Consensus 693 GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sV 772 (3738)
T KOG1428|consen 693 GVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSV 772 (3738)
T ss_pred ccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEE
Confidence 11111 1112467999
Q ss_pred EecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEE
Q psy16692 212 ACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSI 290 (1149)
Q Consensus 212 a~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~ 290 (1149)
+||..|++++.++ ++||+||+|.+||||.|++ +..+|+.|..|.. ..+.+|+||.+||+
T Consensus 773 SCG~~HtVlL~sd-~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~-------------------t~~vQVaAGSNHT~ 832 (3738)
T KOG1428|consen 773 SCGNFHTVLLASD-RRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSD-------------------TVIVQVAAGSNHTI 832 (3738)
T ss_pred eccCceEEEEecC-CcEEEecCCcccccCcCccccCCCcceEEcCCC-------------------CceEEEecCCCceE
Confidence 9999999999999 9999999999999999999 9999999987652 24789999999999
Q ss_pred EEEecCCC
Q psy16692 291 VTVTKSSD 298 (1149)
Q Consensus 291 ~l~~~~~~ 298 (1149)
+...+++.
T Consensus 833 l~~~DGsV 840 (3738)
T KOG1428|consen 833 LRANDGSV 840 (3738)
T ss_pred EEecCCcE
Confidence 99999976
No 21
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.64 E-value=3.1e-16 Score=180.76 Aligned_cols=106 Identities=27% Similarity=0.518 Sum_probs=91.9
Q ss_pred CCCccccCCCcccc--------------ccceeecC-CCeEEcCCCccc----chhhHHHHHHHHHHhhhcCceeccCCc
Q psy16692 706 FPIVAAYPKNGINH--------------YGITEYEE-TRSIWFSEDTFE----DQNMCFLIGTLCGLAIYNYTIINMPFP 766 (1149)
Q Consensus 706 f~ge~~~d~gG~~~--------------yglf~~~~-~~~~~~~~~s~~----~~~~f~~iG~l~glAly~~~~ld~~F~ 766 (1149)
|.||+|+|+||++| +|||++.+ ++.+|++|.+.. ..++|+++|+++|+||+|+..++++||
T Consensus 16 F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~~~~~~l~~f~~~G~lig~al~~~~~~~l~f~ 95 (336)
T smart00119 16 FEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFFANPEHLAYFRFIGRVLGKALYDNRLLDLFFA 95 (336)
T ss_pred ECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccccchHHHHHHHHHHHHHHHHHHcCCeeCCCCC
Confidence 77888889999888 78887654 458999998653 346999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccchhhhCHHHHHHHHHH-HhCCCCCchhhhcceeh
Q psy16692 767 LALYKKILDEPILLQDLKDLSPTLAKSLQDI-LDYREPDLEDVFGITFR 814 (1149)
Q Consensus 767 ~~fykkLLg~~~~l~DL~~ldp~l~~sL~~l-l~~~~~dv~~~~~ltF~ 814 (1149)
++|||+|+|.+++++||+++||++|++|++| ++++. .+.++++|+
T Consensus 96 ~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~---~~~~~l~F~ 141 (336)
T smart00119 96 RPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDT---SEELDLTFS 141 (336)
T ss_pred HHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCC---cccccceEE
Confidence 9999999999999999999999999999999 56543 334889997
No 22
>KOG0940|consensus
Probab=99.59 E-value=3e-16 Score=179.42 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=129.6
Q ss_pred CcCCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc---
Q psy16692 649 LVLSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH--- 719 (1149)
Q Consensus 649 ~~~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~--- 719 (1149)
.+.++.++++|+|+ +++||+|+++ ++++.+.+. |.|||+.|+||+-|
T Consensus 11 ~~~~~~~~~~~~~~-~~~e~~f~~iM~~~~~~~~~~l~~~-----------------------~~~ee~ldy~glprewf 66 (358)
T KOG0940|consen 11 PQGPQQSHHKVDRD-HLLEDSFNQIMNPKPSDLQKRLMRE-----------------------FKGEEGLDYGGLPREWF 66 (358)
T ss_pred CCCCceeEEEechh-hhHHHHHHHHhCCCchhhhhcceee-----------------------cccccccccCCCCccee
Confidence 34467899999999 9999999999 555666666 78888888888777
Q ss_pred -----------ccceeecCC-CeEEcCCCcc---cchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchh
Q psy16692 720 -----------YGITEYEET-RSIWFSEDTF---EDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLK 784 (1149)
Q Consensus 720 -----------yglf~~~~~-~~~~~~~~s~---~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~ 784 (1149)
||+|++... +++|++|.+. +++++|.|+|+++|+|++|+..++.. -++|||+|++++++++|++
T Consensus 67 ~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~l~~~~~vg~~~~l~~~h~~~~~~g-~r~F~~~i~~ktt~ldd~e 145 (358)
T KOG0940|consen 67 FLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGHLTYFRFVGGVLALAGWHMRFTDTG-QRPFYKHILKKTTTLDDRE 145 (358)
T ss_pred eeeccccCCcceeeeeecccccccccCCccCCCCCcccccccccccccccceeeEecCCC-ceehhhhhhcCccccCchh
Confidence 778888777 5999999987 34579999999999999999999999 9999999999999999999
Q ss_pred hhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 785 DLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 785 ~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
.+||++|+|+.|+++++..+ +++|+ .+ ...++++....++.++..
T Consensus 146 ~~d~e~~~s~~~~~en~~~~-----~~~f~-----~~-------~~~~g~~~~~~l~p~g~~ 190 (358)
T KOG0940|consen 146 AVDPEFYNSLTWIRENDPTN-----DLTFS-----VE-------SEVLGQITTQELKPNGAN 190 (358)
T ss_pred hcCccccccccccccCCccc-----chhhh-----cc-------hhhcCCccceeecCCCcc
Confidence 99999999999999986654 77787 33 335555566666655433
No 23
>KOG0170|consensus
Probab=99.52 E-value=4.8e-15 Score=168.83 Aligned_cols=213 Identities=16% Similarity=0.167 Sum_probs=151.6
Q ss_pred CCCCCCcccccccccccc-hHHHHHHHhcCCCCCCcceeecccCeeeehhhHHHHhhHHHHHHHH---H--Hhhhhhhhh
Q psy16692 900 RKVAYTAFYMPDLATVCD-IRIDYFRWISGRPNGSTRDFLCNYPFIFDAKAKTTLLEMDQRIQME---H--AMNQTNFYL 973 (1149)
Q Consensus 900 ~~~~~~~Fy~~~l~~~~~-~~~d~~~w~~~~~~~~~~~~~~~~PF~~~~~~K~~~l~~~~~~~~~---~--~~~~~~~~~ 973 (1149)
++||.++|.|..|+.++. ..+|...|+...-..-..+.--.|||+|++++|..+|+..+....+ + ....+....
T Consensus 132 ~~vp~sefiNsKLt~Kl~rql~d~l~v~sg~lp~w~~~L~~~cpfLfpf~Tr~~~f~~taFg~~R~~~~~k~~s~~~~~~ 211 (621)
T KOG0170|consen 132 EIVPTSEFINSKLTAKLARQLQDPLVVASGALPDWSLFLTRRCPFLFPFDTRMLYFYSTAFGLSRAIQLLKNKSKGSKDG 211 (621)
T ss_pred cCCChHHHHHHHhhHHHHHHhcCcceeecCCCChhhhhhhhcCCeeccHHHHHHHHHHHHhhhhhHHHHHhhcccCCCCC
Confidence 569999999999998877 6677777776543111123445699999999999999977664211 1 111000000
Q ss_pred -hhhhcCCCCCCCceEEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHH
Q psy16692 974 -FLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLL 1052 (1149)
Q Consensus 974 -~~~~~~~~~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~ 1052 (1149)
-.......+.-++-+++|+|++|++.|++.|+.+ ..-|.-|.| +|.+|.|...| ++-|||++++
T Consensus 212 s~~e~~~~~grL~RkK~risR~~Il~sa~kvm~~y--gss~~vLEI------------EY~~EvGTGLG-PTLEFYtlVS 276 (621)
T KOG0170|consen 212 SNDEALQQLGRLTRKKLRISRKTILASALKVMEKY--GSSKAVLEI------------EYEEEVGTGLG-PTLEFYTLVS 276 (621)
T ss_pred CchHHhHhhcccchhhhhhhHHHHHHHHHHHHHHh--cCCcceEEE------------EeccccccCCC-cceeeHHHHH
Confidence 0001111234567789999999999999999885 445678999 99999999887 9999999999
Q ss_pred HHhcCCCCCceEEccCCceeecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCcc---ccchhhhh
Q psy16692 1053 KEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFE---DQNMYFLI 1129 (1149)
Q Consensus 1053 ~e~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 1129 (1149)
|++..++.|||+.++ +-+-++...+ +..+| -++.++|| +||....++.+ ...+|+++
T Consensus 277 k~fq~~sLgmWR~~s---~s~~~~k~~~--------~t~~v----~~~sgLFp-----~P~~~ts~~se~~kvi~~F~~L 336 (621)
T KOG0170|consen 277 KEFQRASLGMWRCNS---VSYRSGKPQE--------NTKDV----YITSGLFP-----RPWPPTSNSSENEKVIELFRLL 336 (621)
T ss_pred HHHhhccccccccCc---eeeccCCCCC--------Ccchh----hhccccCC-----CCCCCCCCchhHHHHHHHHHHH
Confidence 999999999998653 2222222111 11222 23678888 78777777665 67799999
Q ss_pred hHHHHHHHhcCcc-cCCCC
Q psy16692 1130 GTLCGLAIYNYTV-RFPAR 1147 (1149)
Q Consensus 1130 G~l~g~aiy~~~~-~fP~a 1147 (1149)
|+++||||+++++ ++|+.
T Consensus 337 G~~vAkal~D~Rildlpls 355 (621)
T KOG0170|consen 337 GTFVAKALQDGRILDLPLS 355 (621)
T ss_pred HHHHHHHHhcCceEeeecc
Confidence 9999999999999 88875
No 24
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.51 E-value=1.6e-14 Score=166.63 Aligned_cols=91 Identities=33% Similarity=0.609 Sum_probs=79.3
Q ss_pred CcccccCc-eEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceeecCCchhhhhhhhh
Q psy16692 1008 TTNDFKKP-LKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYF 1086 (1149)
Q Consensus 1008 ~~~~l~~~-l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~~ 1086 (1149)
...++|++ ++| +|.||+|+|+||++||||+++++|+++|++|||++.++++.+|++|.+..
T Consensus 3 ~~~~~~~~~l~V------------~F~gE~g~d~gG~~rEf~~~l~~el~~~~~~lf~~~~~~~~~~~~p~~~~------ 64 (336)
T smart00119 3 SDEDLKKSVLEI------------EFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRAFF------ 64 (336)
T ss_pred ChHHhCCCeEEE------------EECCCCCccCCchHHHHHHHHHHHHhCcccCCceEcCCCCeEEeCCCccc------
Confidence 46789999 999 99999999999999999999999999999999999988888999883211
Q ss_pred hccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc-cCCCC
Q psy16692 1087 LIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV-RFPAR 1147 (1149)
Q Consensus 1087 l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~-~fP~a 1147 (1149)
.+.+++++|+++|+++|+||+++.+ ++|++
T Consensus 65 -------------------------------~~~~~l~~f~~~G~lig~al~~~~~~~l~f~ 95 (336)
T smart00119 65 -------------------------------ANPEHLAYFRFIGRVLGKALYDNRLLDLFFA 95 (336)
T ss_pred -------------------------------cchHHHHHHHHHHHHHHHHHHcCCeeCCCCC
Confidence 2346788999999999999999998 55554
No 25
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.34 E-value=9.3e-13 Score=151.07 Aligned_cols=109 Identities=30% Similarity=0.520 Sum_probs=87.7
Q ss_pred HHHHHhhcCCCCCcCCCCCCccccCCCccccccceeecCCCeEEcCCCc----------ccchhhHHHHHHHHHHhhhcC
Q psy16692 689 LILFTAMRNSSVDVFPDFPIVAAYPKNGINHYGITEYEETRSIWFSEDT----------FEDQNMCFLIGTLCGLAIYNY 758 (1149)
Q Consensus 689 ~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~yglf~~~~~~~~~~~~~s----------~~~~~~f~~iG~l~glAly~~ 758 (1149)
++|.+|+++|.+++| +..+.++.+|+||.. ....++|+++|+++|+||+++
T Consensus 1 ~l~~~el~~~~~~lF-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~lig~ai~~~ 61 (317)
T PF00632_consen 1 TLLCKELFDPNLGLF-------------------YQTSNNGLFWPNPNSNRDSPSPASSEEHLKMFRFLGRLIGKAIRNG 61 (317)
T ss_dssp HHHHHHHTSGGGSSE-------------------ESSTTTCEEEEECCH----TTGGGSTTHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHhcCccCCCc-------------------eEcCCCCEEeCCCcccccccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence 478999999999998 346777889999862 233568999999999999999
Q ss_pred ceeccCCcHHHHHHHh-CCCCCccchhhhCHHHHHHHHHHHhCCCC--Cchhhhcceehhhh
Q psy16692 759 TIINMPFPLALYKKIL-DEPILLQDLKDLSPTLAKSLQDILDYREP--DLEDVFGITFRNWY 817 (1149)
Q Consensus 759 ~~ld~~F~~~fykkLL-g~~~~l~DL~~ldp~l~~sL~~ll~~~~~--dv~~~~~ltF~~ww 817 (1149)
..++++||++|||+|+ |.+++++||+++||+++++|++|++++.+ ++++ ++++|+..+
T Consensus 62 ~~l~~~f~~~~~k~l~~g~~~t~~Dl~~iD~~~~~sl~~l~~~~~~~~~~~~-l~l~F~~~~ 122 (317)
T PF00632_consen 62 IPLPLPFSPAFWKYLLSGEPLTLEDLEEIDPELYKSLKKLLDMDNDEEDVED-LDLTFSVPS 122 (317)
T ss_dssp S-ESSEB-HHHHHHHT-T----HHHHHCCSHHHHHHHHHHHHSHSGSCTTSG-CTEBSEEEE
T ss_pred CccccCcCHHHHHHHhcCCCCccccchhcCchhhcchhhheeccccccceee-cceEEEEec
Confidence 9999999999999999 99999999999999999999999977543 3455 799998443
No 26
>KOG0940|consensus
Probab=99.25 E-value=1.7e-12 Score=148.76 Aligned_cols=111 Identities=26% Similarity=0.482 Sum_probs=99.3
Q ss_pred CCCCceEEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCC
Q psy16692 982 TLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYG 1061 (1149)
Q Consensus 982 ~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g 1061 (1149)
+..+.+.++|+|++++||+++++....+.++|+.+-+ .|.||+|.|.||+.||||.++++|+|+|.||
T Consensus 12 ~~~~~~~~~~~~~~~~e~~f~~iM~~~~~~~~~~l~~------------~~~~ee~ldy~glprewf~~lS~e~~~p~~~ 79 (358)
T KOG0940|consen 12 QGPQQSHHKVDRDHLLEDSFNQIMNPKPSDLQKRLMR------------EFKGEEGLDYGGLPREWFFLLSHEGFNPWYG 79 (358)
T ss_pred CCCceeEEEechhhhHHHHHHHHhCCCchhhhhccee------------ecccccccccCCCCcceeeeeccccCCccee
Confidence 3456789999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ceEEccCCceeecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCc
Q psy16692 1062 MFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYT 1141 (1149)
Q Consensus 1062 ~f~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~ 1141 (1149)
+|.+..++...|.+|.+ . ..++++++|.|+|+++|+|+++..
T Consensus 80 ~~~~~~~~~tlq~~P~s------------------------g--------------~~p~~l~~~~~vg~~~~l~~~h~~ 121 (358)
T KOG0940|consen 80 LFQHSRKDYTLWLNPRS------------------------G--------------VNPGHLTYFRFVGGVLALAGWHMR 121 (358)
T ss_pred eeeecccccccccCCcc------------------------C--------------CCCCcccccccccccccccceeeE
Confidence 99998775567777732 2 236799999999999999999987
Q ss_pred c
Q psy16692 1142 V 1142 (1149)
Q Consensus 1142 ~ 1142 (1149)
.
T Consensus 122 ~ 122 (358)
T KOG0940|consen 122 F 122 (358)
T ss_pred e
Confidence 4
No 27
>KOG0170|consensus
Probab=99.12 E-value=8.6e-11 Score=134.67 Aligned_cols=136 Identities=19% Similarity=0.276 Sum_probs=103.3
Q ss_pred EEEEEeCCCchhHhHhhhh----ccCCceEEE----------EehhhHHHHHHhhcCCCCCcCCCCC----CccccCCCc
Q psy16692 655 YVLQRDRTFELVGITVLLL----VVPYPLRML----------ATSLASLILFTAMRNSSVDVFPDFP----IVAAYPKNG 716 (1149)
Q Consensus 655 l~l~VrR~~~l~~ds~~~l----~l~~~l~v~----------~~~e~~~~l~~~~~~~~~~~f~~f~----ge~~~d~gG 716 (1149)
=++.|.|+ +|++.|...| .-+.-|.|. ++-||+.++++++.++..+|+++.. .+......+
T Consensus 226 kK~risR~-~Il~sa~kvm~~ygss~~vLEIEY~~EvGTGLGPTLEFYtlVSk~fq~~sLgmWR~~s~s~~~~k~~~~t~ 304 (621)
T KOG0170|consen 226 KKLRISRK-TILASALKVMEKYGSSKAVLEIEYEEEVGTGLGPTLEFYTLVSKEFQRASLGMWRCNSVSYRSGKPQENTK 304 (621)
T ss_pred hhhhhhHH-HHHHHHHHHHHHhcCCcceEEEEeccccccCCCcceeeHHHHHHHHhhccccccccCceeeccCCCCCCcc
Confidence 46889999 9999999999 334455555 9999999999999999999998742 111111110
Q ss_pred ccc--ccceeecCCCeEEcCCC--cccc---hhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhhhCHH
Q psy16692 717 INH--YGITEYEETRSIWFSED--TFED---QNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDLSPT 789 (1149)
Q Consensus 717 ~~~--yglf~~~~~~~~~~~~~--s~~~---~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ldp~ 789 (1149)
.-- -|||..+ | ++. +.++ ...|.++|+++|+||+++.+||+||.++|||.+||.+++..|+..+||+
T Consensus 305 ~v~~~sgLFp~P-----~-~~ts~~se~~kvi~~F~~LG~~vAkal~D~Rildlpls~~Fykl~l~q~Lt~~dv~~vd~~ 378 (621)
T KOG0170|consen 305 DVYITSGLFPRP-----W-PPTSNSSENEKVIELFRLLGTFVAKALQDGRILDLPLSKAFYKLILGQELTSHDVTTVDPE 378 (621)
T ss_pred hhhhccccCCCC-----C-CCCCCchhHHHHHHHHHHHHHHHHHHHhcCceEeeeccHHHHHHHhcCCcccccceecCHH
Confidence 000 2222211 1 111 2232 3479999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy16692 790 LAKSLQDI 797 (1149)
Q Consensus 790 l~~sL~~l 797 (1149)
++++|..|
T Consensus 379 l~~sL~~L 386 (621)
T KOG0170|consen 379 LAKSLLEL 386 (621)
T ss_pred HHHHHHHH
Confidence 99999988
No 28
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.95 E-value=9.2e-10 Score=91.64 Aligned_cols=51 Identities=41% Similarity=0.729 Sum_probs=45.8
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEE
Q psy16692 79 CGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVL 130 (1149)
Q Consensus 79 ~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aL 130 (1149)
||+||+||.|.+||||... .......|++|+.+.+.+|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~-~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGG-DNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSS-SSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCC-CCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999332 46778999999999999999999999999986
No 29
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=98.92 E-value=1.5e-09 Score=90.33 Aligned_cols=51 Identities=39% Similarity=0.894 Sum_probs=44.4
Q ss_pred CCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEE
Q psy16692 171 PGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVL 221 (1149)
Q Consensus 171 ~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~al 221 (1149)
||+||+||.|.+||||..........|++|+.+.+.+|++|+||.+||+||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999944444444489999999999999999999999986
No 30
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.59 E-value=6e-08 Score=72.03 Aligned_cols=30 Identities=47% Similarity=0.839 Sum_probs=26.0
Q ss_pred EEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCCC
Q psy16692 51 VVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQ 92 (1149)
Q Consensus 51 IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQ 92 (1149)
|++|+||. +|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~------------~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGG------------YHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEES------------SEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecC------------CEEEEEEcCCCEEEEcCCcCCC
Confidence 68999999 9999999999999999999998
No 31
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=98.46 E-value=2.4e-07 Score=68.77 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=26.0
Q ss_pred EEEEEecCCeEEEEEecCCcEEEEecCCCCC
Q psy16692 208 IALIACGANHSFVLSKSVSRLYAFGIGSAVQ 238 (1149)
Q Consensus 208 V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQ 238 (1149)
|++|+||.+|+++++++ |+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~-g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSD-GEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-T-TEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcC-CCEEEEcCCcCCC
Confidence 68999999999999999 9999999999998
No 32
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=97.65 E-value=3.2e-05 Score=89.02 Aligned_cols=68 Identities=28% Similarity=0.431 Sum_probs=50.3
Q ss_pred HHHHHHhcCCCCCceEEccCCceeecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhh
Q psy16692 1049 MLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFL 1128 (1149)
Q Consensus 1049 ~ll~~e~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1128 (1149)
++|++|+|+|++|||..+++++.+|+++....+. +.......++++|++
T Consensus 1 ~l~~~el~~~~~~lF~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~ 49 (317)
T PF00632_consen 1 TLLCKELFDPNLGLFYQTSNNGLFWPNPNSNRDS-------------------------------PSPASSEEHLKMFRF 49 (317)
T ss_dssp HHHHHHHTSGGGSSEESSTTTCEEEEECCH-----------------------------------TTGGGSTTHHHHHHH
T ss_pred CHHHHHhcCccCCCceEcCCCCEEeCCCcccccc-------------------------------cccccCHHHHHHHHH
Confidence 5899999999999999999999999998421100 000022357889999
Q ss_pred hhHHHHHHHhcCcc-cCCCC
Q psy16692 1129 IGTLCGLAIYNYTV-RFPAR 1147 (1149)
Q Consensus 1129 ~G~l~g~aiy~~~~-~fP~a 1147 (1149)
+|+++|+||+++.+ ++|++
T Consensus 50 lG~lig~ai~~~~~l~~~f~ 69 (317)
T PF00632_consen 50 LGRLIGKAIRNGIPLPLPFS 69 (317)
T ss_dssp HHHHHHHHHHTTS-ESSEB-
T ss_pred HHHHHHHHHHcCCccccCcC
Confidence 99999999999998 55553
No 33
>KOG0943|consensus
Probab=95.31 E-value=0.022 Score=71.78 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhhhCHHHHHHHHHHHhCC
Q psy16692 741 QNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDILDYR 801 (1149)
Q Consensus 741 ~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ldp~l~~sL~~ll~~~ 801 (1149)
+..|+-||||+|+++.-+-+..+.|.+-.||-|||.++...|+..+||.+|.+|+.|....
T Consensus 2742 LaafRniGRIlGiCL~Qgdi~PirfnRHifk~iL~l~icW~Df~FfDPVlfenLRaLfkAh 2802 (3015)
T KOG0943|consen 2742 LAAFRNIGRILGICLLQGDICPIRFNRHIFKVILGLKICWHDFAFFDPVLFENLRALFKAH 2802 (3015)
T ss_pred HHHHHhhhhHhhhhhhcCcccceeehhHHHHHHhcCceehhhhccccHHHHHHHHHHHhcC
Confidence 4579999999999999999999999999999999999999999999999999999997553
No 34
>KOG0315|consensus
Probab=83.97 E-value=66 Score=36.03 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=43.2
Q ss_pred CeeEEEecCceEEEecCCC-----CCCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEec
Q psy16692 125 SHCLVLTSSGVVTCTHKEN-----GCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGN 179 (1149)
Q Consensus 125 ~hs~aLT~~G~Vy~wG~n~-----qlG~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~ 179 (1149)
.+-+.=+.+|.|..|.-.. ++-......|.+++...+-+.+++.++.|+.|+|-.
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 3445556789999996544 444446788999999999999888999999999975
No 35
>KOG0943|consensus
Probab=83.90 E-value=0.24 Score=63.02 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=86.3
Q ss_pred CCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEe-ccCCCCcEEEEEeCCCe
Q psy16692 48 SVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRV-KGLASVSVVQACAGYSH 126 (1149)
Q Consensus 48 ~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V-~~l~~~~I~~Ia~G~~h 126 (1149)
+.+++.|.+-. +-.++|..+|++|.|-+...--+...-.-+++...|..- -++.+.+|+..++..-.
T Consensus 373 an~~I~I~A~s------------~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR 440 (3015)
T KOG0943|consen 373 ANKFICIGALS------------SELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIR 440 (3015)
T ss_pred CCeeEEeehhH------------HHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCcee
Confidence 44677776666 667788899999999998765443322223333444322 24678899999999999
Q ss_pred eEEEecCceEEEecCCCCCC------CC-------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCC
Q psy16692 127 CLVLTSSGVVTCTHKENGCG------SD-------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQ 184 (1149)
Q Consensus 127 s~aLT~~G~Vy~wG~n~qlG------~~-------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQ 184 (1149)
.-++|++|.+-+|=.....| .. .+..+++--|+..|.++ .-.+.-+|=||-=.+.|
T Consensus 441 ~si~T~nghlasWlDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaA--f~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 441 ASIATENGHLASWLDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAA--FLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred eeeeecCCchhhHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH--HhhhceeeEEeeeeehh
Confidence 99999999999995443222 11 34456677888899988 88889999999655444
No 36
>KOG3669|consensus
Probab=79.79 E-value=49 Score=40.78 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=44.4
Q ss_pred cEEEEEeCC-CeeEEEecCceEEE-ecCCC--CCCCC--------CCCCeEEEEecCCeeEEEEeCCCCcEEE
Q psy16692 116 SVVQACAGY-SHCLVLTSSGVVTC-THKEN--GCGSD--------PSQGVQSNLVQDSHTTITSLNSPGELYT 176 (1149)
Q Consensus 116 ~I~~Ia~G~-~hs~aLT~~G~Vy~-wG~n~--qlG~~--------~~~~V~~Is~G~~hs~a~~Lt~~G~Vys 176 (1149)
.+.+|++|. ....+++.+|.|+. -|-.. +.|.. ....++.|+.|....=+ ||.+|.+|.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWkdI~tP~~a~~~v~iSvGt~t~Wa--ldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWKDIVTPRQALEPVCISVGTQTLWA--LDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhhhccCcccccceEEEEeccceEEE--EecCCcEEE
Confidence 589999999 66778999999876 35444 44442 22338999999776666 999999986
No 37
>KOG3669|consensus
Probab=75.43 E-value=74 Score=39.31 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=53.9
Q ss_pred cEEEEEeCCCcccccccccCccEEEEEeeCCcEE-EEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeE
Q psy16692 50 SVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVF-TWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 128 (1149)
Q Consensus 50 ~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy-~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~ 128 (1149)
.+++|++|.. .-..+++.+|.|| --|-....+.|..- .+..+|+... .++.|+-|....-
T Consensus 228 ~L~qISagPt-----------g~VwAvt~nG~vf~R~GVsRqNp~GdsW---kdI~tP~~a~-----~~v~iSvGt~t~W 288 (705)
T KOG3669|consen 228 DLSQISAGPT-----------GVVWAVTENGAVFYREGVSRQNPEGDSW---KDIVTPRQAL-----EPVCISVGTQTLW 288 (705)
T ss_pred ccceEeecCc-----------ceEEEEeeCCcEEEEecccccCCCCchh---hhccCccccc-----ceEEEEeccceEE
Confidence 4899999981 5667999999984 67877777777654 1334443332 2899999999999
Q ss_pred EEecCceEEEe
Q psy16692 129 VLTSSGVVTCT 139 (1149)
Q Consensus 129 aLT~~G~Vy~w 139 (1149)
+||.+|.+|+-
T Consensus 289 aldndg~lwfr 299 (705)
T KOG3669|consen 289 ALDNDGNLWFR 299 (705)
T ss_pred EEecCCcEEEE
Confidence 99999999874
No 38
>KOG0315|consensus
Probab=75.10 E-value=97 Score=34.77 Aligned_cols=169 Identities=15% Similarity=0.214 Sum_probs=92.1
Q ss_pred CcEEEEEeCCCccccccc------------ccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCC---
Q psy16692 49 VSVVQACAGYSHCLVLTS------------TTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLA--- 113 (1149)
Q Consensus 49 ~~IvqVacG~~hs~~Lt~------------S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~--- 113 (1149)
.++.-+++|.+||+=+=. +-++-..+-||.+++..+-+.|.+=.|=.- +...|.++..+.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~-----~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDL-----NSNNPNPVATFEGHT 83 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEc-----cCCCCCceeEEeccC
Confidence 468888999977763222 334455667777777666665544333211 112233333322
Q ss_pred -CCcEEEEEeCCCeeEEEecCceEEEecCCC-CC--CCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCC
Q psy16692 114 -SVSVVQACAGYSHCLVLTSSGVVTCTHKEN-GC--GSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINN 189 (1149)
Q Consensus 114 -~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-ql--G~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~ 189 (1149)
+...+...|-+.-..-=.+||.+-.|.--. ++ .......|..|.--.+.+-+..-+.+|.|++|-.+.. .
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~------~ 157 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN------S 157 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC------c
Confidence 223333344444444445788888887655 22 2223455555555555444423678899999975442 1
Q ss_pred CCCcccccEEecccCCCCEEEEEecCCeEEEE-EecCCcEEEEecC
Q psy16692 190 SNTTVTKPQRVESLVNLPIALIACGANHSFVL-SKSVSRLYAFGIG 234 (1149)
Q Consensus 190 ~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~al-t~~~G~Vy~wG~N 234 (1149)
- .. ..+++ .+..|.+++.+.+-+.+. ..++|+.|+|-.-
T Consensus 158 c-~~----~liPe-~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 158 C-TH----ELIPE-DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred c-cc----ccCCC-CCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 1 11 12222 124678888877766543 2334999999863
No 39
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=69.29 E-value=2.6e+02 Score=33.74 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=28.2
Q ss_pred ecCceEEEecCCC--CCCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEE
Q psy16692 131 TSSGVVTCTHKEN--GCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTW 177 (1149)
Q Consensus 131 T~~G~Vy~wG~n~--qlG~~~~~~V~~Is~G~~hs~a~~Lt~~G~Vysw 177 (1149)
..++.++.--.+. + .+....+..++...+...+|+++.+|.+|..
T Consensus 197 ~~g~~i~~i~~~~~~~--i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 197 ANGETIYIIDENSFKQ--IDSDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred ecCCEEEEEEcccccc--ccCCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 3445566433322 2 2234578888888666555669999999974
No 40
>KOG1900|consensus
Probab=68.15 E-value=59 Score=43.78 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=93.0
Q ss_pred EEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEEC
Q psy16692 8 LALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGG 87 (1149)
Q Consensus 8 laLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~ 87 (1149)
+-+|.|.++|-|-.|+.+++-.-+.-......-..++.-.|+-+-.| .|.+++...=+|+-.|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----------------qhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----------------QHLLVVATPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----------------heeEEecccceEEEEEE
Confidence 34789999999999998777543321112222223333334333334 78888888888888876
Q ss_pred CCC-CCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEe-cCceEEE--------ecCCC----CCCCC-----
Q psy16692 88 DTH-GQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLT-SSGVVTC--------THKEN----GCGSD----- 148 (1149)
Q Consensus 88 N~~-GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT-~~G~Vy~--------wG~n~----qlG~~----- 148 (1149)
-.. ++.+.+...+. -.| ...|..|..|++-++-=++++ .+|.+|- |-... -++.+
T Consensus 157 ~~~~~~~~~~~f~~~-----~~i-~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 157 SFDEFTGELSIFNTS-----FKI-SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred EeccccCcccccccc-----eee-ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 321 22222211111 111 124566777776665556666 6666663 21110 01110
Q ss_pred ----------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcc
Q psy16692 149 ----------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMG 186 (1149)
Q Consensus 149 ----------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG 186 (1149)
..+.|.+|+.+....+.-.+++.|.|=+|--+..|+-|
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 25689999999999988778999999888777777655
No 41
>PRK05560 DNA gyrase subunit A; Validated
Probab=58.18 E-value=5.7e+02 Score=33.85 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=65.5
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCC-----CeeEEEecCceEEEecCCC--
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGY-----SHCLVLTSSGVVTCTHKEN-- 143 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~-----~hs~aLT~~G~Vy~wG~n~-- 143 (1149)
.+-+++|+.|++|..-...--..+... .-......++...+.+|+.+.+.. ...+++|.+|.+.-.-...
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~---~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~ 625 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTA---RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFS 625 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCC---CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhh
Confidence 678889999999998665333222111 011111123334566787777754 3467788999776432111
Q ss_pred ---CCCC-----CCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCc
Q psy16692 144 ---GCGS-----DPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQM 185 (1149)
Q Consensus 144 ---qlG~-----~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQL 185 (1149)
.-|. ..+..++.+..+..+.-++++|++|++|.+-...--..
T Consensus 626 ~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~ 675 (805)
T PRK05560 626 NIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPM 675 (805)
T ss_pred hcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCcc
Confidence 1121 14456666666666555555999999999866544333
No 42
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=57.87 E-value=64 Score=44.56 Aligned_cols=113 Identities=14% Similarity=0.203 Sum_probs=74.1
Q ss_pred eccCCCCcEEEEE-eCCCeeEEEecCceEEEecCCC---CCCCC-CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCC
Q psy16692 109 VKGLASVSVVQAC-AGYSHCLVLTSSGVVTCTHKEN---GCGSD-PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYG 183 (1149)
Q Consensus 109 V~~l~~~~I~~Ia-~G~~hs~aLT~~G~Vy~wG~n~---qlG~~-~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~G 183 (1149)
+..+.+..|..+| .+.++.++|++.|.+...-... .+... ....|+++++-..|.+. ++|++|++|..-.-.+-
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~l~~~gl~G~ik~l~lD~~~nL~-Alt~~G~Lf~~~k~~WQ 775 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQKPGRPVPLSRPGLSGEIKDLALDEKQNLY-ALTSTGELFRLPKEAWQ 775 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCccccccCCCCCccCCCCCCCcchhheeecccccee-EecCCCceeecCHHHhh
Confidence 3445555565554 4789999999999988764222 22221 35678999999998877 69999999974322211
Q ss_pred CcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEec
Q psy16692 184 QMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKS 224 (1149)
Q Consensus 184 QLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~ 224 (1149)
+.-.+.. .. ...++|..+.+.+|..+....+|.+.+.-+
T Consensus 776 ~~~~~~~-~~-~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~ 814 (1774)
T PF11725_consen 776 GNAEGDQ-MA-AKWQKVALPDEQPVKSLRTNDDNHLSAQIE 814 (1774)
T ss_pred CcccCCc-cc-cCceeccCCCCCchhhhhcCCCCceEEEec
Confidence 1001111 11 145566666778999999999999998766
No 43
>KOG0291|consensus
Probab=57.33 E-value=5.4e+02 Score=33.29 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=61.1
Q ss_pred EEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCC--CCcEEEEEeCCCeeEEEe--cCceEEEecCCCCCCC-
Q psy16692 73 SLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLA--SVSVVQACAGYSHCLVLT--SSGVVTCTHKENGCGS- 147 (1149)
Q Consensus 73 slaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~--~~~I~~Ia~G~~hs~aLT--~~G~Vy~wG~n~qlG~- 147 (1149)
++++...|.=.+.|...-|||+.=. -. ..-..++ .+ -..+..++-..+-.++.| +||+|-.|..+.....
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVwe--Wq--sEsYVlK-QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWE--WQ--SESYVLK-QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEE--ee--ccceeee-ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 5666777998999999999987532 11 1111111 11 124666666666666666 7899999977662211
Q ss_pred ---CCCCCe--EEEEecCCeeEEEEeCCCCcEEEEecCCC
Q psy16692 148 ---DPSQGV--QSNLVQDSHTTITSLNSPGELYTWGNNEY 182 (1149)
Q Consensus 148 ---~~~~~V--~~Is~G~~hs~a~~Lt~~G~VyswG~n~~ 182 (1149)
.....| ++.+.-++..+. ..-||.|=+|--..|
T Consensus 387 TFteHts~Vt~v~f~~~g~~lls--sSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 387 TFTEHTSGVTAVQFTARGNVLLS--SSLDGTVRAWDLKRY 424 (893)
T ss_pred EeccCCCceEEEEEEecCCEEEE--eecCCeEEeeeeccc
Confidence 122333 334444444444 667899999987665
No 44
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.30 E-value=65 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.119 Sum_probs=26.4
Q ss_pred CCcEEEEEeCCCeeEEEecCceEEEecCCC
Q psy16692 114 SVSVVQACAGYSHCLVLTSSGVVTCTHKEN 143 (1149)
Q Consensus 114 ~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~ 143 (1149)
+.+++.+.|.+.+-+++|.+|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 457888999999999999999999997655
No 45
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=53.00 E-value=4e+02 Score=35.28 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeC-----CCeeEEEecCceEEEecCCC--
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAG-----YSHCLVLTSSGVVTCTHKEN-- 143 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G-----~~hs~aLT~~G~Vy~wG~n~-- 143 (1149)
.+-++.|+.|++|..-...--..|... .-......++...+.+|+.+.+- ...-+.+|.+|.+.-.-.+.
T Consensus 547 d~LllfTs~Grv~~l~~~~IP~~~r~~---~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~ 623 (800)
T TIGR01063 547 DYLLFFTNRGKVYWLKVYQIPEASRTA---KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFS 623 (800)
T ss_pred CeEEEEeCCCcEEEEEhhhCcCCCcCC---CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhh
Confidence 678889999999998443222221111 11111112333456677776662 23467788889776542111
Q ss_pred ---CCCC-----CCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcc
Q psy16692 144 ---GCGS-----DPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMG 186 (1149)
Q Consensus 144 ---qlG~-----~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG 186 (1149)
..|. ..+..++.+..+..+.-++++|++|++|.+-...--..|
T Consensus 624 ~~~r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~g 674 (800)
T TIGR01063 624 NIRSNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMG 674 (800)
T ss_pred hhccCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcC
Confidence 2222 134566666666655444459999999999766544444
No 46
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=49.15 E-value=1.2e+02 Score=34.61 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
+.-|-++...||.||--++. .|-+|+-+. ...+++++.-|.. ..-|.+++..||..
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP--------------~tGev~~ypLg~G---------a~Phgiv~gpdg~~ 117 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDP--------------ATGEVETYPLGSG---------ASPHGIVVGPDGSA 117 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCC--------------CCCceEEEecCCC---------CCCceEEECCCCCe
Confidence 45678899999999965443 344554321 1123555555541 12678888889998
Q ss_pred EEEECC-CCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCCCCCC-CCCCCeEEE----
Q psy16692 83 FTWGGD-THGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGS-DPSQGVQSN---- 156 (1149)
Q Consensus 83 y~WG~N-~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~qlG~-~~~~~V~~I---- 156 (1149)
|..-.. ..+.++-.+ ......|.. .+-+-+.-.+.+++..|.+|..|.+.-.|. ++...+++|
T Consensus 118 Witd~~~aI~R~dpkt--~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP 186 (353)
T COG4257 118 WITDTGLAIGRLDPKT--LEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP 186 (353)
T ss_pred eEecCcceeEEecCcc--cceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC
Confidence 877433 222222111 111122211 122334556788899999999998774443 233333333
Q ss_pred EecCCeeEEEEeCCCCcEEEE
Q psy16692 157 LVQDSHTTITSLNSPGELYTW 177 (1149)
Q Consensus 157 s~G~~hs~a~~Lt~~G~Vysw 177 (1149)
.-+.-..++ .|-+|.||.-
T Consensus 187 qG~gpyGi~--atpdGsvwya 205 (353)
T COG4257 187 QGGGPYGIC--ATPDGSVWYA 205 (353)
T ss_pred CCCCCcceE--ECCCCcEEEE
Confidence 223445666 8999999975
No 47
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=45.57 E-value=68 Score=44.35 Aligned_cols=69 Identities=22% Similarity=0.284 Sum_probs=43.5
Q ss_pred ccCccEEEEEeeCCcEEEEECCCCCCCCCCCCC---CcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC
Q psy16692 67 TTGLWHSLALNDCGEVFTWGGDTHGQLGLESAD---KKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN 143 (1149)
Q Consensus 67 S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~---~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~ 143 (1149)
..|+.|+++|.++|.=|.=|+|-.-.|=+.+.. ....+.|..+ +.-|..-.++|. +|+|..|....
T Consensus 564 ~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~----------ldl~r~G~v~L~-~G~i~~wD~tt 632 (1774)
T PF11725_consen 564 RQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEI----------LDLGRAGLVGLQ-DGKIQYWDSTT 632 (1774)
T ss_pred cCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHh----------hccccccceeec-cceEeeecCcc
Confidence 678899999998999888888866555333200 0011122222 234566677887 49999998776
Q ss_pred CCC
Q psy16692 144 GCG 146 (1149)
Q Consensus 144 qlG 146 (1149)
|+-
T Consensus 633 q~W 635 (1774)
T PF11725_consen 633 QCW 635 (1774)
T ss_pred hhh
Confidence 443
No 48
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.09 E-value=74 Score=35.03 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCeEEEEecCCeeEEEEeCCCCcEEEEecCC
Q psy16692 150 SQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181 (1149)
Q Consensus 150 ~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~ 181 (1149)
+..++.+.|.+.+-++ +|++|.+|+|--..
T Consensus 12 gs~~~~l~~~~~~Ll~--iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLA--ITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEE--EeCCCeEEEEECCC
Confidence 3467788898888888 99999999996544
No 49
>KOG0296|consensus
Probab=40.18 E-value=4.8e+02 Score=30.93 Aligned_cols=92 Identities=9% Similarity=0.052 Sum_probs=48.2
Q ss_pred CceEEEecCCC--CCCCC---CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCC
Q psy16692 133 SGVVTCTHKEN--GCGSD---PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLP 207 (1149)
Q Consensus 133 ~G~Vy~wG~n~--qlG~~---~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~ 207 (1149)
.|+|..+-.++ .++.. ..+.|..+..+....+++.=.-+|++-.|-.-. .+++.+-.... .
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~-------------~~~R~~c~he~-~ 329 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA-------------STLRHICEHED-G 329 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-------------chhheeccCCC-c
Confidence 46666665543 33322 334455555555544443344578887775422 13333322222 3
Q ss_pred EEEEEecCCeEEEEEecCCcEEEEecCCCCCC
Q psy16692 208 IALIACGANHSFVLSKSVSRLYAFGIGSAVQL 239 (1149)
Q Consensus 208 V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQL 239 (1149)
|+++--=..+.++....+|.|+.|-. ..|||
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDa-RtG~l 360 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDA-RTGQL 360 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeec-cccce
Confidence 55554444566655444599999987 45666
No 50
>KOG0293|consensus
Probab=35.14 E-value=2.2e+02 Score=34.10 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=36.6
Q ss_pred EEEEEeCCCeeEEEe--cCceEEEecCCCCCCC----CCCCCeEEEEec--CCeeEEEEeCCCCcEEEEecCCC
Q psy16692 117 VVQACAGYSHCLVLT--SSGVVTCTHKENGCGS----DPSQGVQSNLVQ--DSHTTITSLNSPGELYTWGNNEY 182 (1149)
Q Consensus 117 I~~Ia~G~~hs~aLT--~~G~Vy~wG~n~qlG~----~~~~~V~~Is~G--~~hs~a~~Lt~~G~VyswG~n~~ 182 (1149)
|.....|.+.+++.+ +|++||-|..-+..-. +....|-.|+-- .-+.+| --.+||+|=.||....
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A-SasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA-SASDDGTIRIWGPSDN 515 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh-ccCCCCeEEEecCCcc
Confidence 566666777677776 7899999988661111 111112222111 112222 2457899999997653
No 51
>PHA02713 hypothetical protein; Provisional
Probab=33.79 E-value=7.7e+02 Score=31.07 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=10.5
Q ss_pred EEeeCCcEEEEECC
Q psy16692 75 ALNDCGEVFTWGGD 88 (1149)
Q Consensus 75 aLt~~G~Vy~WG~N 88 (1149)
+..-+|+||.+|..
T Consensus 347 ~~~~~g~IYviGG~ 360 (557)
T PHA02713 347 LAVIDDTIYAIGGQ 360 (557)
T ss_pred EEEECCEEEEECCc
Confidence 34456999999974
No 52
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=32.16 E-value=8.9e+02 Score=31.77 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=61.8
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
+..+.+++|++|++|.+..+.-- .|.+... ..-..+.--.+..|+.+.+... ..+-+++|+.|..
T Consensus 535 t~d~LllfTs~Gr~yrf~v~eIP-~GR~aGg----pV~~~L~L~~gE~Iv~~~~v~~----------~~~lLlaT~~GyG 599 (735)
T TIGR01062 535 SNQKVVFIDSTGRSYALDPDNLP-SARGQGE----PLTGKLLLPIGATITNILMYSP----------NQLLLMASDAGYG 599 (735)
T ss_pred CCCEEEEEECCCeEEEEEhHhcC-cCccCCc----eeEeeecCCCCCEEEEEEEecC----------CcEEEEEEcCCcE
Confidence 45568899999999999876542 2322211 1111222235667888777651 1357788888877
Q ss_pred EEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEE--EEeCC-CeeEEEecCceEEEecCCC
Q psy16692 83 FTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ--ACAGY-SHCLVLTSSGVVTCTHKEN 143 (1149)
Q Consensus 83 y~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~--Ia~G~-~hs~aLT~~G~Vy~wG~n~ 143 (1149)
+-.-.+.+-....+. .. -..++ .+..++. ...+. ++.+++|++|.+..+-.+.
T Consensus 600 Krt~lse~~~~~RaG--Kg----vi~Lk--~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~E 655 (735)
T TIGR01062 600 FLCNFNDLIARNKAG--KA----LINLP--ENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDD 655 (735)
T ss_pred EEEEhHhccccCcCC--eE----EEEeC--CCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHH
Confidence 665443332211111 00 00011 1222221 12233 2566788899888776555
No 53
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=28.61 E-value=5.2e+02 Score=30.20 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=26.9
Q ss_pred CeeEEEecCceEEEecCCC-----CCCCCC-CCCeEEEEecCCeeEEEEeCCCCcEEEE
Q psy16692 125 SHCLVLTSSGVVTCTHKEN-----GCGSDP-SQGVQSNLVQDSHTTITSLNSPGELYTW 177 (1149)
Q Consensus 125 ~hs~aLT~~G~Vy~wG~n~-----qlG~~~-~~~V~~Is~G~~hs~a~~Lt~~G~Vysw 177 (1149)
.+.++.+.+|.+|++...+ +...+. ......+..+ ++..+ .+.+|+||+|
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v--~~~dG~l~~~ 376 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLV--QTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEE--EeCCceEEEe
Confidence 4556667788888886543 111111 1111222333 34555 7888888886
No 54
>PHA03098 kelch-like protein; Provisional
Probab=26.93 E-value=1e+03 Score=29.46 Aligned_cols=191 Identities=9% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEE
Q psy16692 4 LWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVF 83 (1149)
Q Consensus 4 ~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy 83 (1149)
..+..++.-++.+|..|.......-..... .....-..-..+...+... .+..+..-+|++|
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~-~yd~~~~~W~~~~~~~~~R-----------------~~~~~~~~~~~ly 346 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVV-SYDTKTKSWNKVPELIYPR-----------------KNPGVTVFNNRIY 346 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCCeeccEE-EEeCCCCeeeECCCCCccc-----------------ccceEEEECCEEE
Q ss_pred EEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEe---CCCeeEEEecCceEEEecCCCCCCCC------------
Q psy16692 84 TWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA---GYSHCLVLTSSGVVTCTHKENGCGSD------------ 148 (1149)
Q Consensus 84 ~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~---G~~hs~aLT~~G~Vy~wG~n~qlG~~------------ 148 (1149)
.+|... ......-...-.+.......++. +.....+..-+|.+|.+|+...-+..
T Consensus 347 v~GG~~----------~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 347 VIGGIY----------NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEeCCC----------CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Q ss_pred CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEE----ecCCeEEEEEec
Q psy16692 149 PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIA----CGANHSFVLSKS 224 (1149)
Q Consensus 149 ~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia----~G~~hs~alt~~ 224 (1149)
.-..+.....+...+.+ ...+|++|.+|-.....-...... ..+-.+...++..+. ....|+++..++
T Consensus 417 ~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~------v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 488 (534)
T PHA03098 417 KWSKGSPLPISHYGGCA--IYHDGKIYVIGGISYIDNIKVYNI------VESYNPVTNKWTELSSLNFPRINASLCIFNN 488 (534)
T ss_pred eeeecCCCCccccCceE--EEECCEEEEECCccCCCCCcccce------EEEecCCCCceeeCCCCCcccccceEEEECC
Q ss_pred CCcEEEEe
Q psy16692 225 VSRLYAFG 232 (1149)
Q Consensus 225 ~G~Vy~wG 232 (1149)
++|.+|
T Consensus 489 --~iyv~G 494 (534)
T PHA03098 489 --KIYVVG 494 (534)
T ss_pred --EEEEEc
No 55
>KOG1900|consensus
Probab=26.14 E-value=5.4e+02 Score=35.34 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=79.9
Q ss_pred EEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC---CCCCCC
Q psy16692 73 SLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN---GCGSDP 149 (1149)
Q Consensus 73 slaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~---qlG~~~ 149 (1149)
-+-+|.|.++|-|--|+.+++-.-+.-......-..|+.-.|.=+..| .|.+++...-.++-.|-.. ..+.+.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCcccc
Confidence 356899999999999887777432211111111111221112111121 4667776555555444322 222221
Q ss_pred CCCeEEEEe-cCCeeEEEEeCCCCcEEEEecCCC-----CCcccC------------CCCCcccccEEecc--cCCCCEE
Q psy16692 150 SQGVQSNLV-QDSHTTITSLNSPGELYTWGNNEY-----GQMGIN------------NSNTTVTKPQRVES--LVNLPIA 209 (1149)
Q Consensus 150 ~~~V~~Is~-G~~hs~a~~Lt~~G~VyswG~n~~-----GQLG~g------------~~~~~~~~P~~V~~--l~~~~V~ 209 (1149)
-...-+|+. |-+-.++ .-|++|++|--|.+++ -|.+.| ...-....|+...- ....+|.
T Consensus 168 f~~~~~i~~dg~~V~~I-~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~ 246 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCI-TYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIR 246 (1311)
T ss_pred cccceeeecCCceEEEE-EeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcce
Confidence 111244444 3333333 1478888888776541 011111 00011113442222 1245899
Q ss_pred EEEecCCeEEEE--EecCCcEEEEecCCCCCCC
Q psy16692 210 LIACGANHSFVL--SKSVSRLYAFGIGSAVQLD 240 (1149)
Q Consensus 210 ~Ia~G~~hs~al--t~~~G~Vy~wG~N~~GQLG 240 (1149)
+|+-+....+.+ ++. |.|-+|-.+..|+-|
T Consensus 247 qi~ID~SR~IlY~lsek-~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 247 QITIDNSRNILYVLSEK-GTVSAYDIGGNGLGG 278 (1311)
T ss_pred eeEeccccceeeeeccC-ceEEEEEccCCCccc
Confidence 999998877664 444 888777665655544
No 56
>KOG1240|consensus
Probab=24.80 E-value=5.6e+02 Score=35.04 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=64.1
Q ss_pred cEEEEEeCCCe-eEEEe--cCceEEEecCCCCCCC-C----------CCCCeEEEE-ecCCeeEEEEeCCCCcEEEEecC
Q psy16692 116 SVVQACAGYSH-CLVLT--SSGVVTCTHKENGCGS-D----------PSQGVQSNL-VQDSHTTITSLNSPGELYTWGNN 180 (1149)
Q Consensus 116 ~I~~Ia~G~~h-s~aLT--~~G~Vy~wG~n~qlG~-~----------~~~~V~~Is-~G~~hs~a~~Lt~~G~VyswG~n 180 (1149)
.|.+++....| ++++| +||+|-.|-...-.|. + .+..+..+. |+..+.+|+. ++||.|-..+-+
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~-t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS-TKDGSVRVLRID 1128 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE-cCCCeEEEEEcc
Confidence 46688899888 88888 7799999976652222 1 445566664 4555555544 899999888876
Q ss_pred CCCCcccCCCCCcccccEEecccCC-CCEEEEEe----cCCeEEEEEecCCcEEEEecC
Q psy16692 181 EYGQMGINNSNTTVTKPQRVESLVN-LPIALIAC----GANHSFVLSKSVSRLYAFGIG 234 (1149)
Q Consensus 181 ~~GQLG~g~~~~~~~~P~~V~~l~~-~~V~~Ia~----G~~hs~alt~~~G~Vy~wG~N 234 (1149)
.+.+ . .....-.++..+.+ ..+++.-+ -..|.+++..+.+.+..|+..
T Consensus 1129 ~~~~----~--~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1129 HYNV----S--KRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred cccc----c--cceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 6411 1 11101112222211 22333221 122566655555889999863
No 57
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=24.27 E-value=48 Score=38.52 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=40.9
Q ss_pred cccccee-ecCCCeEE--cCCCcccchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccch
Q psy16692 718 NHYGITE-YEETRSIW--FSEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDL 783 (1149)
Q Consensus 718 ~~yglf~-~~~~~~~~--~~~~s~~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL 783 (1149)
.+||-.. ..++..+| +|+-+. +-.+.=|+ +|++|+.++.+||-+--..+|+|+..+-++.
T Consensus 53 HkYGpHIFHT~~~~Vwdyv~~F~e----~~~Y~hrV--la~~ng~~~~lP~nl~ti~ql~G~~~~p~~a 115 (374)
T COG0562 53 HKYGPHIFHTDNKRVWDYVNQFTE----FNPYQHRV--LALVNGQLYPLPFNLNTINQLFGKNFTPDEA 115 (374)
T ss_pred eeccCceeecCchHHHHHHhhhhh----hhhhccce--eEEECCeeeeccccHHHHHHHhCccCCHHHH
Confidence 4588533 34555566 444332 23345566 8999999999999999999999975543333
No 58
>KOG1274|consensus
Probab=23.80 E-value=1.3e+03 Score=30.72 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=76.9
Q ss_pred CCceEEEEeeCCc-EEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCc
Q psy16692 3 GLWHSLALNDCGE-VFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGE 81 (1149)
Q Consensus 3 G~~HslaLt~dG~-VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~ 81 (1149)
++...++.+.+|+ |+++|.|..=..-... .....|..|.. .+..|..|+|-. +|.+.=++++.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~---sd~e~P~ti~~-~g~~v~~ia~~s------------~~f~~~s~~~t 77 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTN---SDEEEPETIDI-SGELVSSIACYS------------NHFLTGSEQNT 77 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecC---CcccCCchhhc-cCceeEEEeecc------------cceEEeeccce
Confidence 4456788899997 7777765432211111 11245655543 566789999988 78888888886
Q ss_pred E--EEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEec---CceEEEecCCCCCCCCCCCCeEEE
Q psy16692 82 V--FTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTS---SGVVTCTHKENGCGSDPSQGVQSN 156 (1149)
Q Consensus 82 V--y~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~---~G~Vy~wG~n~qlG~~~~~~V~~I 156 (1149)
| |.++....+-+ -.....|..+-...+..=.-+++|++..+-+.+ .+..... .+....|..+
T Consensus 78 v~~y~fps~~~~~i------L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-------rgh~apVl~l 144 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTI------LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-------RGHDAPVLQL 144 (933)
T ss_pred EEEeeCCCCCccce------eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-------cccCCceeee
Confidence 5 55554332211 111223333332222211122233333333321 1111111 1134455666
Q ss_pred EecCCeeEEEEeCCCCcEEEEecC
Q psy16692 157 LVQDSHTTITSLNSPGELYTWGNN 180 (1149)
Q Consensus 157 s~G~~hs~a~~Lt~~G~VyswG~n 180 (1149)
+.-...-+++..+.+|+|+.|---
T Consensus 145 ~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 145 SYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eEcCCCCEEEEEecCceEEEEEcc
Confidence 655555555558889999999653
No 59
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.62 E-value=1.8e+03 Score=29.26 Aligned_cols=153 Identities=12% Similarity=-0.018 Sum_probs=75.2
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
...+.++.|+.|++|..-...--..|.... .......+....+.+|+.+.+-... .....-+++|.+|.+
T Consensus 545 t~d~LllfTs~Grv~~l~~~~IP~~~r~~~---G~~i~~ll~L~~~E~Iv~~i~~~~~-------~~~~~lvliT~~Gyi 614 (800)
T TIGR01063 545 THDYLLFFTNRGKVYWLKVYQIPEASRTAK---GKPIVNLLPLQPDERITAILSVKEF-------DDGLYLFFATKNGVV 614 (800)
T ss_pred CCCeEEEEeCCCcEEEEEhhhCcCCCcCCC---CcCHHHhccCCCCCeEEEEEEeccC-------CCCCEEEEEeCCCEE
Confidence 345678889999999984433222221111 1111122333356667776552200 011356788999987
Q ss_pred EEEECCCCCC---CCCCCCCCcccccceEeccCCCCcEEEEE--eCCCeeEEEecCceEEEecCCC--CCC---------
Q psy16692 83 FTWGGDTHGQ---LGLESADKKSQSIPKRVKGLASVSVVQAC--AGYSHCLVLTSSGVVTCTHKEN--GCG--------- 146 (1149)
Q Consensus 83 y~WG~N~~GQ---LG~g~~~~~~~~~P~~V~~l~~~~I~~Ia--~G~~hs~aLT~~G~Vy~wG~n~--qlG--------- 146 (1149)
--.-.+.+-. .|... ++.-.+..++.+. ...++.+++|++|.++..-... ..|
T Consensus 615 KRi~l~~~~~~~r~G~~a-----------iklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i 683 (800)
T TIGR01063 615 KKTSLTEFSNIRSNGIIA-----------IKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGI 683 (800)
T ss_pred EEEEhHHhhhhccCCccc-----------ccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecc
Confidence 7654433211 11100 0000123344333 3345678889999998753332 111
Q ss_pred -CCCCCCeEEEEecCC--eeEEEEeCCCCcEEEEe
Q psy16692 147 -SDPSQGVQSNLVQDS--HTTITSLNSPGELYTWG 178 (1149)
Q Consensus 147 -~~~~~~V~~Is~G~~--hs~a~~Lt~~G~VyswG 178 (1149)
...++.|+.+.+-.. +.++ +|++|.+.-.-
T Consensus 684 ~L~~~E~Vv~~~~v~~~~~ll~--vT~~G~~Kr~~ 716 (800)
T TIGR01063 684 KLKNEDFVVSLLVVSEESYLLI--VTENGYGKRTS 716 (800)
T ss_pred cCCCCCEEEEEEEeccccEEEE--EecCCcEEEEE
Confidence 124555666554322 3334 77777665543
No 60
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=21.99 E-value=2.1e+03 Score=29.38 Aligned_cols=111 Identities=16% Similarity=0.193 Sum_probs=61.0
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccC--CCCcEEEEEeCCC-----eeEEEecCceEEEecCCC
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL--ASVSVVQACAGYS-----HCLVLTSSGVVTCTHKEN 143 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l--~~~~I~~Ia~G~~-----hs~aLT~~G~Vy~wG~n~ 143 (1149)
.+-+++|+.|++|.--...--..+... .-.+.-..++.+ .+.+|+.+.+-.+ +-+++|.+|.+.-.--..
T Consensus 564 d~LL~FTn~Gkvy~ikvy~IPe~~~~~---~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~e 640 (957)
T PRK13979 564 DTLLIFTDKGNMYQIKGINIPEFKWKE---KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDK 640 (957)
T ss_pred CEEEEEECCCeEEEEEeeeCCCCCcCC---CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhh
Confidence 778899999999976543322221111 001111112111 3567777777643 357788999887653221
Q ss_pred ----CCCC-----CCCCCeEEEEecCC-----eeEEEEeCCCCcEEEEecCCCCCcc
Q psy16692 144 ----GCGS-----DPSQGVQSNLVQDS-----HTTITSLNSPGELYTWGNNEYGQMG 186 (1149)
Q Consensus 144 ----qlG~-----~~~~~V~~Is~G~~-----hs~a~~Lt~~G~VyswG~n~~GQLG 186 (1149)
.-|. ..+..++.+..... +.++ +|++|.+.-|-.+.-..+|
T Consensus 641 f~~~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil--~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 641 FVTNYTKLMALKLKKGEKLIKVKLVDRTREEKFIKI--KTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred ccccccceEEEEcCCCCEEEEEEEcCCCCCCCEEEE--EeCCCcEEEEEHHHCcccC
Confidence 1121 14455555544432 3455 8999998888665544444
No 61
>PRK05560 DNA gyrase subunit A; Validated
Probab=21.55 E-value=2e+03 Score=28.93 Aligned_cols=154 Identities=10% Similarity=-0.061 Sum_probs=76.1
Q ss_pred CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEE
Q psy16692 4 LWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVF 83 (1149)
Q Consensus 4 ~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy 83 (1149)
..+.++.|+.|++|..-...--..+.... .......+....+.+|+.+.+-..+ ......+++|.+|.+-
T Consensus 548 ~d~LllfTs~Grv~~l~v~~iP~~~~~~~---G~~i~~ll~L~~~E~Iv~~i~~~~~-------~~e~~lvlvTk~GyiK 617 (805)
T PRK05560 548 HDTLLFFTNRGRVYRLKVYEIPEASRTAR---GRPIVNLLPLEPGEKITAILPVREF-------DDDKYLFFATKNGTVK 617 (805)
T ss_pred CCeEEEEecCCeEEEEEhhhCcCCCcCCC---CeEHHHhcCCCCCceEEEEEeccCC-------CCCCEEEEEeCCCEEE
Confidence 45678889999999986653322221111 1111112333356677776654310 0114578888999776
Q ss_pred EEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEe--CCCeeEEEecCceEEEecCCC--CC-----CC-----CC
Q psy16692 84 TWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA--GYSHCLVLTSSGVVTCTHKEN--GC-----GS-----DP 149 (1149)
Q Consensus 84 ~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~--G~~hs~aLT~~G~Vy~wG~n~--ql-----G~-----~~ 149 (1149)
.--.+.+-....+ ....++.-.+..++.+.. ..++.+++|++|.++..-... .. |. ..
T Consensus 618 Ri~l~~~~~~~r~--------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~ 689 (805)
T PRK05560 618 KTSLSEFSNIRSN--------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE 689 (805)
T ss_pred EEEhHHhhhcccC--------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC
Confidence 5533322110000 001111112334444433 345678889999998753322 11 11 14
Q ss_pred CCCeEEEEecCC---eeEEEEeCCCCcEEEE
Q psy16692 150 SQGVQSNLVQDS---HTTITSLNSPGELYTW 177 (1149)
Q Consensus 150 ~~~V~~Is~G~~---hs~a~~Lt~~G~Vysw 177 (1149)
++.|+.+.+... +.++ +|+.|.+.-.
T Consensus 690 ~E~Vv~~~~v~~~~~~il~--vTk~G~iKr~ 718 (805)
T PRK05560 690 GDEVVSMDVVREDSQEILT--VTENGYGKRT 718 (805)
T ss_pred CCEEEEEEEEcCCCcEEEE--EEeCCeEEEE
Confidence 555666554432 3344 7777765544
No 62
>KOG0649|consensus
Probab=20.49 E-value=9.3e+02 Score=27.29 Aligned_cols=143 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEeeCCcEEEEeCCCCCCCCC-------CCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCc
Q psy16692 9 ALNDCGEVFTWGGDTHGQLGL-------ESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGE 81 (1149)
Q Consensus 9 aLt~dG~VysWG~N~~GQLG~-------g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~ 81 (1149)
|+...++.+.-| |.+|++-. ..........|..-..-.+.+|-.++.-. .|-+.--. |.
T Consensus 17 a~sp~~~~l~ag-n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d------------~~Lls~gd-G~ 82 (325)
T KOG0649|consen 17 AISPSKQYLFAG-NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD------------DFLLSGGD-GL 82 (325)
T ss_pred hhCCcceEEEEe-cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh------------hheeeccC-ce
Q ss_pred EEEEECCCCCC-CCCCCCCCcccccceEeccCCCCcEEEEEeC-CCeeEEEe-cCceEEEecCCCCCCCCCCCCeEEEEe
Q psy16692 82 VFTWGGDTHGQ-LGLESADKKSQSIPKRVKGLASVSVVQACAG-YSHCLVLT-SSGVVTCTHKENGCGSDPSQGVQSNLV 158 (1149)
Q Consensus 82 Vy~WG~N~~GQ-LG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G-~~hs~aLT-~~G~Vy~wG~n~qlG~~~~~~V~~Is~ 158 (1149)
||+|-+|+.-. ++... .-....|.++...+--.|-....- .+.++++. -||.+|+|.- ...+|+..--
T Consensus 83 V~gw~W~E~~es~~~K~--lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl-------E~G~i~r~~r 153 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKR--LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL-------EDGRIQREYR 153 (325)
T ss_pred EEEeeehhhhhhccchh--hhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe-------cCCEEEEEEc
Q ss_pred cCC---eeEEEEe-CCCCcEEE
Q psy16692 159 QDS---HTTITSL-NSPGELYT 176 (1149)
Q Consensus 159 G~~---hs~a~~L-t~~G~Vys 176 (1149)
|.. |+++ . ..+|++++
T Consensus 154 GHtDYvH~vv--~R~~~~qils 173 (325)
T KOG0649|consen 154 GHTDYVHSVV--GRNANGQILS 173 (325)
T ss_pred CCcceeeeee--ecccCcceee
Done!