Query psy16692
Match_columns 1149
No_of_seqs 630 out of 3705
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.5E-47 5.1E-52 450.0 31.9 286 1-313 22-366 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 2.1E-45 7.3E-50 429.1 30.0 257 1-296 113-388 (389)
3 3kci_A Probable E3 ubiquitin-p 100.0 5.2E-45 1.8E-49 425.9 28.3 273 1-312 59-353 (389)
4 3mvd_K Regulator of chromosome 100.0 3.5E-44 1.2E-48 422.8 34.2 274 1-297 81-420 (423)
5 1a12_A RCC1, regulator of chro 100.0 5.3E-44 1.8E-48 420.3 31.2 270 1-312 65-373 (413)
6 3of7_A Regulator of chromosome 100.0 1.8E-43 6.3E-48 423.2 30.6 276 1-312 73-413 (473)
7 1a12_A RCC1, regulator of chro 100.0 7.2E-43 2.5E-47 410.7 30.3 261 1-298 117-412 (413)
8 4d9s_A UVB-resistance protein 100.0 3.8E-42 1.3E-46 404.1 29.9 236 1-256 127-379 (406)
9 3mvd_K Regulator of chromosome 100.0 4.9E-42 1.7E-46 404.5 30.8 273 1-312 30-330 (423)
10 3of7_A Regulator of chromosome 100.0 1.2E-41 4E-46 407.6 30.4 259 1-296 154-451 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 2.5E-37 8.4E-42 346.2 23.7 218 1-310 30-252 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.5E-35 5E-40 331.8 24.5 203 1-298 69-275 (282)
13 1c4z_A E6AP, ubiquitin-protein 99.9 7.7E-27 2.6E-31 268.3 14.3 160 651-846 2-185 (358)
14 3h1d_A E3 ubiquitin-protein li 99.9 1.7E-25 5.6E-30 260.1 11.9 154 651-830 44-222 (405)
15 3olm_A E3 ubiquitin-protein li 99.9 1.5E-25 5.1E-30 263.0 10.4 159 649-846 69-252 (429)
16 1zvd_A SMAD ubiquitination reg 99.9 4.6E-25 1.6E-29 255.5 9.7 157 651-846 21-202 (380)
17 1nd7_A WW domain-containing pr 99.9 8.5E-25 2.9E-29 252.9 11.0 158 651-846 20-202 (374)
18 2oni_A E3 ubiquitin-protein li 99.9 9.2E-24 3.1E-28 245.3 13.9 156 651-846 39-221 (392)
19 3h1d_A E3 ubiquitin-protein li 99.9 2.8E-23 9.5E-28 241.4 12.2 136 939-1142 18-154 (405)
20 1c4z_A E6AP, ubiquitin-protein 99.9 1.3E-22 4.3E-27 233.4 10.1 111 983-1146 2-116 (358)
21 2oni_A E3 ubiquitin-protein li 99.9 2E-22 6.7E-27 234.2 10.4 139 936-1142 11-151 (392)
22 3olm_A E3 ubiquitin-protein li 99.9 1.8E-22 6.2E-27 236.8 9.6 114 983-1146 71-186 (429)
23 1nd7_A WW domain-containing pr 99.9 3.8E-22 1.3E-26 230.8 11.7 113 984-1146 21-135 (374)
24 1zvd_A SMAD ubiquitination reg 99.9 1.1E-21 3.8E-26 227.2 12.6 113 984-1146 22-136 (380)
25 4gbf_A Phikz131; 7-bladed beta 94.7 0.09 3.1E-06 56.2 9.2 108 115-239 239-380 (400)
26 4gbf_A Phikz131; 7-bladed beta 89.9 0.81 2.8E-05 49.0 8.5 63 4-93 318-380 (400)
27 2zwa_A Leucine carboxyl methyl 82.4 23 0.0008 43.7 17.6 147 71-233 442-615 (695)
28 2zwa_A Leucine carboxyl methyl 80.8 17 0.00059 44.9 15.7 20 4-23 441-461 (695)
29 3uc1_A DNA gyrase subunit A; D 76.3 1E+02 0.0035 34.4 19.5 215 3-240 52-284 (327)
30 1suu_A DNA gyrase subunit A; t 67.1 1.5E+02 0.0053 32.5 22.1 207 6-241 10-237 (312)
31 2ovr_B FBW7, F-BOX/WD repeat p 66.0 1.7E+02 0.0059 32.7 22.4 105 115-234 280-390 (445)
32 3odt_A Protein DOA1; ubiquitin 65.7 1.3E+02 0.0044 31.1 20.4 133 71-233 115-253 (313)
33 1gxr_A ESG1, transducin-like e 64.9 1.4E+02 0.0048 31.2 22.8 193 4-234 11-213 (337)
34 1k3i_A Galactose oxidase precu 62.8 1.1E+02 0.0036 37.2 16.5 73 161-238 458-534 (656)
35 1p22_A F-BOX/WD-repeat protein 61.9 2E+02 0.0069 32.1 23.8 136 71-233 224-363 (435)
36 1p22_A F-BOX/WD-repeat protein 61.8 2E+02 0.0069 32.0 24.3 143 50-234 175-324 (435)
37 4aez_A CDC20, WD repeat-contai 60.2 2.1E+02 0.007 31.6 21.1 140 5-181 104-248 (401)
38 2ovr_B FBW7, F-BOX/WD repeat p 59.6 2.2E+02 0.0075 31.8 22.0 135 71-235 170-308 (445)
39 1k3i_A Galactose oxidase precu 56.8 1.6E+02 0.0056 35.5 16.7 61 71-141 245-305 (656)
40 3k26_A Polycomb protein EED; W 53.0 2.3E+02 0.0078 29.9 16.6 186 3-231 84-314 (366)
41 1r5m_A SIR4-interacting protei 49.7 2.8E+02 0.0095 29.9 18.1 96 71-180 260-360 (425)
42 3uc1_A DNA gyrase subunit A; D 48.6 3.2E+02 0.011 30.3 17.4 152 71-231 54-224 (327)
43 3mmy_A MRNA export factor; mRN 46.8 2.8E+02 0.0096 29.2 17.2 188 14-235 5-199 (368)
44 1xip_A Nucleoporin NUP159; bet 43.8 73 0.0025 36.5 9.9 178 5-222 40-230 (388)
45 3v7d_B Cell division control p 43.1 3.9E+02 0.013 29.7 21.9 134 71-234 281-420 (464)
46 4asc_A Kelch repeat and BTB do 42.7 1E+02 0.0036 33.0 10.7 18 124-142 140-157 (315)
47 4aez_A CDC20, WD repeat-contai 41.0 3.9E+02 0.013 29.2 17.3 138 71-235 104-248 (401)
48 3mkq_A Coatomer beta'-subunit; 40.8 5.5E+02 0.019 30.9 20.1 98 71-181 154-259 (814)
49 3mmy_A MRNA export factor; mRN 36.3 2.3E+02 0.008 29.8 12.2 108 113-234 38-159 (368)
50 3odt_A Protein DOA1; ubiquitin 35.5 3.8E+02 0.013 27.4 21.0 135 71-234 156-295 (313)
51 1suu_A DNA gyrase subunit A; t 35.0 4.8E+02 0.016 28.5 21.1 164 3-187 57-237 (312)
52 1wp5_A Topoisomerase IV; broke 34.2 5.1E+02 0.017 28.5 21.8 214 3-239 49-281 (323)
53 1gxr_A ESG1, transducin-like e 33.2 4.2E+02 0.015 27.3 20.4 95 71-180 196-295 (337)
54 3sfz_A APAF-1, apoptotic pepti 28.5 1E+03 0.034 30.5 18.3 96 71-180 670-773 (1249)
55 3l6v_A GYRA, DNA gyrase subuni 27.7 6.9E+02 0.024 28.1 21.7 120 3-140 56-177 (370)
56 2aq5_A Coronin-1A; WD40 repeat 27.6 6.2E+02 0.021 27.5 22.2 144 11-180 54-206 (402)
57 4a11_B DNA excision repair pro 27.0 5.9E+02 0.02 27.0 19.4 150 71-235 113-276 (408)
58 3gre_A Serine/threonine-protei 26.7 5.3E+02 0.018 28.3 13.5 98 71-181 183-292 (437)
59 3zwl_B Eukaryotic translation 26.5 5.7E+02 0.019 26.6 14.3 151 1-177 83-245 (369)
60 3no0_A DNA gyrase subunit A; D 26.2 6.3E+02 0.021 27.0 20.1 198 5-240 36-251 (276)
61 3ii7_A Kelch-like protein 7; p 24.0 3.4E+02 0.012 28.6 10.7 18 5-23 48-65 (306)
62 4asc_A Kelch repeat and BTB do 23.1 5.3E+02 0.018 27.2 12.2 17 125-142 91-107 (315)
63 3v7d_B Cell division control p 22.7 8E+02 0.027 27.0 22.9 133 71-232 323-460 (464)
64 2vpj_A Kelch-like protein 12; 22.7 5E+02 0.017 27.1 11.7 18 71-89 105-122 (301)
65 1zi0_A DNA gyrase subunit A; b 22.0 7.8E+02 0.027 26.7 22.7 210 3-236 52-278 (307)
66 1sq9_A Antiviral protein SKI8; 21.6 7.5E+02 0.026 26.3 17.5 68 114-181 233-322 (397)
67 2pm9_A Protein WEB1, protein t 20.8 7.9E+02 0.027 26.3 14.0 67 115-181 263-337 (416)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.5e-47 Score=449.97 Aligned_cols=286 Identities=24% Similarity=0.382 Sum_probs=260.9
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCccccccc--------------
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTS-------------- 66 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~-------------- 66 (1149)
|||..|++||+++|+||+||.|.+||||.+... ....|..+..+.+.+|++|+||..|+++++.
T Consensus 22 a~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~--~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~G 99 (406)
T 4d9s_A 22 SAGASHSVALLSGDIVCSWGRGEDGQLGHGDAE--DRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99 (406)
T ss_dssp EECSSEEEEEETTTEEEEEECCTTSTTCSSSCC--CEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGG
T ss_pred ecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcc--cCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCc
Confidence 699999999999999999999999999999864 5678999999998899999999999998864
Q ss_pred ---------------------------ccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEE
Q psy16692 67 ---------------------------TTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ 119 (1149)
Q Consensus 67 ---------------------------S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~ 119 (1149)
+||..|+++|+++|+||+||.|.+||||.+. ......|+.+..+.+.+|++
T Consensus 100 qLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~p~~v~~~~~~~i~~ 177 (406)
T 4d9s_A 100 RLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQKIQAFEGIRIKM 177 (406)
T ss_dssp TTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--CCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC--CCCcccceEecccCCCcEEE
Confidence 4799999999999999999999999999997 45667899999999999999
Q ss_pred EEeCCCeeEEEecCceEEEecCCC--CCCCC--------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCC
Q psy16692 120 ACAGYSHCLVLTSSGVVTCTHKEN--GCGSD--------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYG 183 (1149)
Q Consensus 120 Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~--------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~G 183 (1149)
|+||..|+++|+++|+||+||.|. |+|.+ ...+|++|+||..|+++ ++++|+||+||.|.+|
T Consensus 178 va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~--l~~~G~v~~wG~n~~G 255 (406)
T 4d9s_A 178 VAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTIS--VSYSGALYTYGWSKYG 255 (406)
T ss_dssp EEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEE--EETTCCEEEEECCTTS
T ss_pred EecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEE--EcCCCCEEEeeCCCCC
Confidence 999999999999999999999998 88875 34689999999999999 9999999999999999
Q ss_pred CcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccc
Q psy16692 184 QMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVA 262 (1149)
Q Consensus 184 QLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~ 262 (1149)
|||+++..... .|+++..+.+.+|++|+||.+|++|++++ |+||+||.|.+||||.+.. +...|++|..+.
T Consensus 256 qlG~g~~~~~~-~p~~v~~~~~~~v~~i~~G~~hs~alt~~-G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~------ 327 (406)
T 4d9s_A 256 QLGHGDLEDHL-IPHKLEALSNSFISQISGGWRHTMALTSD-GKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD------ 327 (406)
T ss_dssp TTCSSSCCCEE-EEEECGGGTTSCEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCSSSSSCEEEEEEECCGG------
T ss_pred CCCCCCCcCcc-ccEEecccCCCCEEEEEecCCEEEEEcCC-CeEEEeeCCCCCCCCCCCCCCCccCEEEeccC------
Confidence 99999877666 89999999888999999999999999998 9999999999999999998 888888887432
Q ss_pred cccCccccccccCCcceEEEeecCCeEEEEEecCCC-CCCCcccccccccCc
Q psy16692 263 MTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD-GVLSDDFRVLNPATQ 313 (1149)
Q Consensus 263 ~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~-~~~~~~~~~~~~~~~ 313 (1149)
..+|.+|+||.+|+++++.++.. .|+.+++++++....
T Consensus 328 -------------~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 366 (406)
T 4d9s_A 328 -------------DQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES 366 (406)
T ss_dssp -------------GCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC
T ss_pred -------------CCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCC
Confidence 23589999999999999999887 999999999987654
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=429.14 Aligned_cols=257 Identities=27% Similarity=0.479 Sum_probs=233.7
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
|||..|++||+++|+||+||.|.+||||.+.. .....|+.|..+.+.+|++|+||. +|+++|+++|
T Consensus 113 ~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~--~~~~~p~~v~~l~~~~i~~va~G~------------~hs~alt~~G 178 (389)
T 3kci_A 113 NSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR--SPCDRPRVIESLRGIEVVDVAAGG------------AHSACVTAAG 178 (389)
T ss_dssp CTTCSEEEEEETTSCEEEEECCGGGTTCSSSC--CCEEEEEECGGGTTSCEEEEEECS------------SEEEEEETTS
T ss_pred CcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC--ccCcCCeEecccCCCeEEEEEeCc------------CeEEEEeCCC
Confidence 69999999999999999999999999999985 366789999999999999999999 9999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCC--CeeEEEecCceEEEecCCC--CCCCC--------
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGY--SHCLVLTSSGVVTCTHKEN--GCGSD-------- 148 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~--~hs~aLT~~G~Vy~wG~n~--qlG~~-------- 148 (1149)
+||+||.|.+||||.+. ......|+.+..+.+.+|++|+||. .|+++|+++|+||+||.|. |+|.+
T Consensus 179 ~v~~wG~n~~GqLG~~~--~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p 256 (389)
T 3kci_A 179 DLYTWGKGRYGRLGHSD--SEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVP 256 (389)
T ss_dssp CEEEEECCGGGTTCSSS--CCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEE
T ss_pred eEEEeCCCCCCCcCCCC--CcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCcccc
Confidence 99999999999999997 4566789999999999999999995 8999999999999999998 88874
Q ss_pred ------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEE
Q psy16692 149 ------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLS 222 (1149)
Q Consensus 149 ------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt 222 (1149)
...+|++|+||..|+++ |+++|+||+||.|.+||||++...... .|++|..+.+.+|++|+||.+|++|++
T Consensus 257 ~~v~~~~~~~v~~v~~G~~hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~-~P~~v~~l~~~~v~~ia~G~~h~~al~ 333 (389)
T 3kci_A 257 MKIDSLTGLGVVKVECGSQFSVA--LTKSGAVYTWGKGDYHRLGHGSDDHVR-RPRQVQGLQGKKVIAIATGSLHCVCCT 333 (389)
T ss_dssp EECGGGTTSCEEEEEEETTEEEE--EETTSCEEEEECCGGGTTCSSSCCCEE-EEEECGGGTTCCEEEEEECSSEEEEEE
T ss_pred EEecccCCCcEEEEeCCCCEEEE--EeCCCeEEEEeCCCCCCCCCCCCcccc-CCeEeccCCCCCEEEEEeccCeEEEEC
Confidence 34569999999999999 999999999999999999999877665 899999998889999999999999999
Q ss_pred ecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecC
Q psy16692 223 KSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKS 296 (1149)
Q Consensus 223 ~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~ 296 (1149)
++ |+||+||.|.+||||.+.. +...|+.|..+ ...+|.+|+||.+||+++++++
T Consensus 334 ~~-G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~-------------------~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 334 ED-GEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL-------------------QGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp TT-CCEEEEECCTTSTTCSSSCCCEEEEEECGGG-------------------TTSCCCEEEEETTEEEEECC--
T ss_pred CC-CCEEEeeCCCCCcCCCCCCCCccCcEEeccc-------------------CCCCEEEEEecCCcEEEEecCC
Confidence 98 9999999999999999998 87888877632 3446899999999999997653
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-45 Score=425.88 Aligned_cols=273 Identities=25% Similarity=0.434 Sum_probs=245.8
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCc--EEEEEeCCCcccccccccCccEEEEEee
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVS--VVQACAGYSHCLVLTSTTGLWHSLALND 78 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~--IvqVacG~~hs~~Lt~S~G~~HslaLt~ 78 (1149)
|||..|+++|+++|+||+||.|.+||||.+.. .....|..+..+.+.+ +++|+||. +|+++|++
T Consensus 59 ~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~--~~~~~p~~v~~~~~~~~~~v~i~~G~------------~h~~al~~ 124 (389)
T 3kci_A 59 IGGEQTLFAVTADGKLYATGYGAGGRLGIGGT--ESVSTPTLLESIQHVFIKKVAVNSGG------------KHCLALSS 124 (389)
T ss_dssp EEETTEEEEEETTSCEEEEECCGGGTTSSSSS--CCEEEEEECGGGTTSCEEEEEECTTC------------SEEEEEET
T ss_pred EeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc--CCccCCEEcccccCCceeEEEECcCC------------CeEEEEcC
Confidence 58999999999999999999999999999985 3667899998887764 47888999 99999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC--------
Q psy16692 79 CGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD-------- 148 (1149)
Q Consensus 79 ~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~-------- 148 (1149)
+|+||+||.|.+||||.++ ......|+.+..+.+.+|++|+||..|+++|+++|+||+||.|. |+|.+
T Consensus 125 ~G~v~~wG~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 125 EGEVYSWGEAEDGKLGHGN--RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp TSCEEEEECCGGGTTCSSS--CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred CCCEEEEeCCCCCcCCCCC--CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 9999999999999999997 45667899999999999999999999999999999999999998 88875
Q ss_pred ------CCCCeEEEEecC--CeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEE
Q psy16692 149 ------PSQGVQSNLVQD--SHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFV 220 (1149)
Q Consensus 149 ------~~~~V~~Is~G~--~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~a 220 (1149)
...+|++|+||. .|+++ ++++|+||+||.|.+||||.+...... .|++++.+.+.+|++|+||.+|++|
T Consensus 203 ~~v~~~~~~~v~~ia~G~g~~~t~~--l~~~G~v~~wG~n~~GqLG~g~~~~~~-~p~~v~~~~~~~v~~v~~G~~hs~a 279 (389)
T 3kci_A 203 KLVEALQGHRVVDIACGSGDAQTLC--LTDDDTVWSWGDGDYGKLGRGGSDGCK-VPMKIDSLTGLGVVKVECGSQFSVA 279 (389)
T ss_dssp EECGGGTTSCEEEEEECCSSCEEEE--EETTTEEEEEECCGGGTTSSSSCCCEE-EEEECGGGTTSCEEEEEEETTEEEE
T ss_pred eEecccCCCeEEEEEEcCCCcEEEE--EccCCEEEEEeCCCCCCCCCCCCCCcc-ccEEecccCCCcEEEEeCCCCEEEE
Confidence 346799999995 89998 999999999999999999998876655 8999999888899999999999999
Q ss_pred EEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecCCC-
Q psy16692 221 LSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD- 298 (1149)
Q Consensus 221 lt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~- 298 (1149)
++++ |+||+||.|.+||||.+.. ....|+.|..+ ...+|.+|+||.+|+++++.++..
T Consensus 280 lt~~-G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l-------------------~~~~v~~ia~G~~h~~al~~~G~v~ 339 (389)
T 3kci_A 280 LTKS-GAVYTWGKGDYHRLGHGSDDHVRRPRQVQGL-------------------QGKKVIAIATGSLHCVCCTEDGEVY 339 (389)
T ss_dssp EETT-SCEEEEECCGGGTTCSSSCCCEEEEEECGGG-------------------TTCCEEEEEECSSEEEEEETTCCEE
T ss_pred EeCC-CeEEEEeCCCCCCCCCCCCccccCCeEeccC-------------------CCCCEEEEEeccCeEEEECCCCCEE
Confidence 9998 9999999999999999988 77788877632 234689999999999999999877
Q ss_pred CCCCcccccccccC
Q psy16692 299 GVLSDDFRVLNPAT 312 (1149)
Q Consensus 299 ~~~~~~~~~~~~~~ 312 (1149)
.|+.+++++++...
T Consensus 340 ~wG~n~~GqLG~g~ 353 (389)
T 3kci_A 340 TWGDNDEGQLGDGT 353 (389)
T ss_dssp EEECCTTSTTCSSS
T ss_pred EeeCCCCCcCCCCC
Confidence 99999999998654
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-44 Score=422.79 Aligned_cols=274 Identities=24% Similarity=0.365 Sum_probs=242.3
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCccccccc--------------
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTS-------------- 66 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~-------------- 66 (1149)
|||..|++||+++|+||+||.|.+||||.+.........|..|... .+|++|+||..|+++|+.
T Consensus 81 a~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~ 158 (423)
T 3mvd_K 81 SAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSH 158 (423)
T ss_dssp EECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSS
T ss_pred eeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCC
Confidence 6999999999999999999999999999998654456788888743 369999999999999975
Q ss_pred --------------------------ccCccEEEEEeeCCcEEEEECCCCCCCCCCCCC---------CcccccceEecc
Q psy16692 67 --------------------------TTGLWHSLALNDCGEVFTWGGDTHGQLGLESAD---------KKSQSIPKRVKG 111 (1149)
Q Consensus 67 --------------------------S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~---------~~~~~~P~~V~~ 111 (1149)
+||.+|+++|+++|+||+||.|.+||||.+... ......|..+..
T Consensus 159 GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~ 238 (423)
T 3mvd_K 159 GNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII 238 (423)
T ss_dssp SEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC
T ss_pred CCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee
Confidence 479999999999999999999999999998632 134568999998
Q ss_pred CCCCcEEEEEeCCCeeEEE-ecCceEEEecCCC--CCCCC-------------CCCCeEEEEecCCeeEEEEeCCCCcEE
Q psy16692 112 LASVSVVQACAGYSHCLVL-TSSGVVTCTHKEN--GCGSD-------------PSQGVQSNLVQDSHTTITSLNSPGELY 175 (1149)
Q Consensus 112 l~~~~I~~Ia~G~~hs~aL-T~~G~Vy~wG~n~--qlG~~-------------~~~~V~~Is~G~~hs~a~~Lt~~G~Vy 175 (1149)
....+|++|+||..|++++ +++|.||+||.|. |+|.+ ...+|++|+||..|+++ |+++|+||
T Consensus 239 ~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~a--lt~~G~v~ 316 (423)
T 3mvd_K 239 TRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVI--LTTDLKCS 316 (423)
T ss_dssp TTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEE--EETTCCEE
T ss_pred cCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEE--EeCCCcEE
Confidence 8888999999999999999 5899999999998 88883 24679999999999999 99999999
Q ss_pred EEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecC
Q psy16692 176 TWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHG 254 (1149)
Q Consensus 176 swG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~ 254 (1149)
+||.|.+||||++........|+.|..+.+ +|++|+||.+|++|++++ |+||+||.|.+||||++.. +...|+.|..
T Consensus 317 ~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~-G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~ 394 (423)
T 3mvd_K 317 VVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTID-GKLYSWGSGVNNQLGVGDGDDELEPIVVVS 394 (423)
T ss_dssp EEECCGGGTTCSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETT-SCEEEEECCTTSCSSSSSSCCEEEEEECCS
T ss_pred EEECCCCCCCCCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCC-CCEEEECCCCCCCCCCCCCCCcccCeEEeC
Confidence 999999999999988776668999988876 899999999999999998 9999999999999999999 8888998874
Q ss_pred CCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecCC
Q psy16692 255 PWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSS 297 (1149)
Q Consensus 255 p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~ 297 (1149)
+. ..+.+|.+|+||++||++++.++.
T Consensus 395 ~~-----------------~~~~~v~~va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 395 KN-----------------TQGKHMLLASGGGQHAIFLVKADK 420 (423)
T ss_dssp TT-----------------TTTCCEEEEEECSSEEEEEEECC-
T ss_pred cc-----------------cCCCEEEEEEECCCcEEEEEcccc
Confidence 21 234569999999999999998764
No 5
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.3e-44 Score=420.29 Aligned_cols=270 Identities=24% Similarity=0.386 Sum_probs=235.8
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
|||..|++||+++|+||+||.|.+||||.+.........|..|. +. .+|++|+||. +|+++|+++|
T Consensus 65 a~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-l~-~~i~~va~G~------------~hs~alt~~G 130 (413)
T 1a12_A 65 EAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVE-LQ-EKVVQVSAGD------------SHTAALTDDG 130 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECC-CC-SCEEEEEECS------------SEEEEEETTS
T ss_pred EeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEec-CC-CcEEEEecCC------------CeEEEEcCCC
Confidence 68999999999999999999999999999886434567888884 33 3899999999 9999999999
Q ss_pred cEEEEEC--CCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC--------
Q psy16692 81 EVFTWGG--DTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD-------- 148 (1149)
Q Consensus 81 ~Vy~WG~--N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~-------- 148 (1149)
+||+||. |.+||||.+. .......|..| +.+.+|++|+||..|+++|+++|+||+||.|. |+|.+
T Consensus 131 ~v~~wG~~~n~~GqlG~~~-~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~ 207 (413)
T 1a12_A 131 RVFLWGSFRDNNGVIGLLE-PMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRG 207 (413)
T ss_dssp CEEEEECEEETTEEEESSB-BTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSC
T ss_pred cEEEeeCCcCCCCccCcCC-ccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccc
Confidence 9999999 9999999986 23334458777 45678999999999999999999999999998 88863
Q ss_pred ----------------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCC-
Q psy16692 149 ----------------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVN- 205 (1149)
Q Consensus 149 ----------------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~- 205 (1149)
...+|++|+||..|+++ ++++|+||+||.|.+||||.+...... .|++|..+.+
T Consensus 208 ~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~a--lt~~G~v~~wG~n~~gqLG~~~~~~~~-~P~~v~~l~~~ 284 (413)
T 1a12_A 208 GRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFA--ISHEGHVYGFGLSNYHQLGTPGTESCF-IPQNLTSFKNS 284 (413)
T ss_dssp GGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEE--EETTCCEEEEECCTTSTTSCSSCSCEE-EEEECGGGCCT
T ss_pred ccccccccccCceEeeccccccCCccEEEEEeCCCEEEE--EeCCCCEEEEeCCCCcCCCCCCCCccc-ccEEchhccCC
Confidence 12569999999999999 999999999999999999998877655 8999988876
Q ss_pred -CCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC--CcccceEecCCCcCCccccccCccccccccCCcceEEE
Q psy16692 206 -LPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS--VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKI 282 (1149)
Q Consensus 206 -~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~--~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~I 282 (1149)
.+|++|+||.+|+++++++ |+||+||.|.+||||.+.. ....|+.|... . +|.+|
T Consensus 285 ~~~v~~ia~G~~hs~al~~~-G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l-------------------~--~v~~v 342 (413)
T 1a12_A 285 TKSWVGFSGGQHHTVCMDSE-GKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL-------------------P--AVSSV 342 (413)
T ss_dssp TCCEEEEEECSSEEEEEETT-SCEEEEECCGGGTTCSCTTCCCEEEEEECCSS-------------------S--SEEEE
T ss_pred CceEEEEecccceEEEEeCC-CCEEEeeCCCCCccCCCCCCccccCCEEeccc-------------------C--ceeEE
Confidence 6799999999999999998 9999999999999999954 66778777521 1 58999
Q ss_pred eecCCeEEEEEecCCC-CCCCcccccccccC
Q psy16692 283 YSGGDHSIVTVTKSSD-GVLSDDFRVLNPAT 312 (1149)
Q Consensus 283 aaG~~hS~~l~~~~~~-~~~~~~~~~~~~~~ 312 (1149)
+||.+|+++++.++.. .|+.+++++++...
T Consensus 343 ~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~ 373 (413)
T 1a12_A 343 ACGASVGYAVTKDGRVFAWGMGTNYQLGTGQ 373 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSSS
T ss_pred EECcceEEEEeCCCCEEEecCCCCCCCCCCC
Confidence 9999999999999877 99999999987654
No 6
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=423.22 Aligned_cols=276 Identities=28% Similarity=0.417 Sum_probs=237.3
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCc---------------------ccccceEecC--C----CCCcEEE
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKK---------------------SQSIPKRVKG--L----ASVSVVQ 53 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~---------------------~~~~P~~V~~--l----~~~~Ivq 53 (1149)
|||..|++||+++|+||+||.|.+||||.+..... ....|..|.. + .+.+|++
T Consensus 73 a~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~ 152 (473)
T 3of7_A 73 AVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQ 152 (473)
T ss_dssp EECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEE
T ss_pred EeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEE
Confidence 69999999999999999999999999999875320 1557888875 5 3688999
Q ss_pred EEeCCCcccccccccCccEEEEEeeCCcEEEEEC--CCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEe
Q psy16692 54 ACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGG--DTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLT 131 (1149)
Q Consensus 54 VacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~--N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT 131 (1149)
|+||. +|+++|+++|+||+||. |..||||.+.........|..|..+.+.+|++|+||..|+++||
T Consensus 153 va~G~------------~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt 220 (473)
T 3of7_A 153 LAATD------------NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD 220 (473)
T ss_dssp EEECS------------SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE
T ss_pred EEccC------------CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEe
Confidence 99999 99999999999999998 68899999764555678899999999889999999999999999
Q ss_pred cCceEEEecCCC--CCCCC---------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCC---
Q psy16692 132 SSGVVTCTHKEN--GCGSD---------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSN--- 191 (1149)
Q Consensus 132 ~~G~Vy~wG~n~--qlG~~---------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~--- 191 (1149)
++|+||+||.|. |+|.+ ...+|++|+||..|+++ ++++|+||+||.|.+||||.+...
T Consensus 221 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~a--lt~~G~v~~wG~n~~GqlG~~~~~~~~ 298 (473)
T 3of7_A 221 EEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFA--LTKDNKLVSWGLNQFGQCGVSEDVEDG 298 (473)
T ss_dssp TTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEE--EETTSCEEEEEECTTSTTCCCSCCCTT
T ss_pred CCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEE--EecCCCEEEeCCCCCCCcCCCCcccCC
Confidence 999999999998 88875 12579999999999999 999999999999999999988765
Q ss_pred CcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCCC---------------cccceEecCCC
Q psy16692 192 TTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKSV---------------HKTPQLIHGPW 256 (1149)
Q Consensus 192 ~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~~---------------~~~P~~V~~p~ 256 (1149)
.....|++|..+.+.+|++|+||.+|+++++++ |+||+||.|.+||||.+... ...|+.+.
T Consensus 299 ~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~-G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~--- 374 (473)
T 3of7_A 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLILSQD-GDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN--- 374 (473)
T ss_dssp CEEEEEEECCCCTTCCEEEEEECSSEEEEEETT-SCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC---
T ss_pred ceeeccccccccCCccEEEEEeCCCeEEEEeCC-CeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC---
Confidence 234479999988888999999999999999998 99999999999999987641 11222221
Q ss_pred cCCccccccCccccccccCCcceEEEeecCCeEEEEEecCCC-CCCCcccccccccC
Q psy16692 257 IASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD-GVLSDDFRVLNPAT 312 (1149)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~-~~~~~~~~~~~~~~ 312 (1149)
. ..+|.+|+||.+|+++++.++.. .|+.+++++++...
T Consensus 375 ----------------~--~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 375 ----------------N--VPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp ----------------S--SCCEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCS
T ss_pred ----------------C--CCceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCC
Confidence 1 11689999999999999999887 99999999998754
No 7
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=7.2e-43 Score=410.66 Aligned_cols=261 Identities=28% Similarity=0.442 Sum_probs=224.5
Q ss_pred CCCCceEEEEeeCCcEEEEeC--CCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEee
Q psy16692 1 MTGLWHSLALNDCGEVFTWGG--DTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALND 78 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~--N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~ 78 (1149)
|||..|++||+++|+||+||. |.+||||.+... .....|..| +.+.+|++|+||. +|+++|++
T Consensus 117 a~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~-~~~~~P~~v--~~~~~i~~ia~G~------------~hs~alt~ 181 (413)
T 1a12_A 117 SAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM-KKSMVPVQV--QLDVPVVKVASGN------------DHLVMLTA 181 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECEEETTEEEESSBBT-BCEEEEEEE--CCSSCEEEEEECS------------SEEEEEET
T ss_pred ecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCcc-ccccCCEEe--cCCCCEEEEEecC------------ceEEEEcC
Confidence 699999999999999999999 999999998753 344568777 4567899999999 99999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCCc---------ccccceEeccC-----CCCcEEEEEeCCCeeEEEecCceEEEecCCC-
Q psy16692 79 CGEVFTWGGDTHGQLGLESADKK---------SQSIPKRVKGL-----ASVSVVQACAGYSHCLVLTSSGVVTCTHKEN- 143 (1149)
Q Consensus 79 ~G~Vy~WG~N~~GQLG~g~~~~~---------~~~~P~~V~~l-----~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~- 143 (1149)
+|+||+||.|.+||||.+..... ....|+.+... ...+|++|+||..|+++|+++|+||+||.|.
T Consensus 182 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~ 261 (413)
T 1a12_A 182 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNY 261 (413)
T ss_dssp TSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTT
T ss_pred CCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCC
Confidence 99999999999999998752111 23567766653 4578999999999999999999999999998
Q ss_pred -CCCCC--------------CC--CCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCC
Q psy16692 144 -GCGSD--------------PS--QGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNL 206 (1149)
Q Consensus 144 -qlG~~--------------~~--~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~ 206 (1149)
|+|.+ .. .+|++|+||..|+++ ++++|+||+||.|.+||||++........|++|+.+.
T Consensus 262 gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~a--l~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~-- 337 (413)
T 1a12_A 262 HQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVC--MDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-- 337 (413)
T ss_dssp STTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEE--EETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--
T ss_pred cCCCCCCCCcccccEEchhccCCCceEEEEecccceEEE--EeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--
Confidence 88875 12 459999999999999 9999999999999999999986555555899998775
Q ss_pred CEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCcceEEEeec
Q psy16692 207 PIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSG 285 (1149)
Q Consensus 207 ~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG 285 (1149)
+|++|+||.+|++|++++ |+||+||.|.+||||.+.. +...|+.|..+. ....+|.+|+||
T Consensus 338 ~v~~v~~G~~hs~alt~~-G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~-----------------~~~~~v~~v~~G 399 (413)
T 1a12_A 338 AVSSVACGASVGYAVTKD-GRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ-----------------LENRVVLSVSSG 399 (413)
T ss_dssp SEEEEEECSSEEEEEETT-SCEEEEECCTTSTTCSSSCSCEEEEEECCSTT-----------------TTTEEEEEEEEC
T ss_pred ceeEEEECcceEEEEeCC-CCEEEecCCCCCCCCCCCCCCcccCeEccccc-----------------cCCCeEEEEeeC
Confidence 799999999999999998 9999999999999999998 888888887421 134569999999
Q ss_pred CCeEEEEEecCCC
Q psy16692 286 GDHSIVTVTKSSD 298 (1149)
Q Consensus 286 ~~hS~~l~~~~~~ 298 (1149)
++||++++.++..
T Consensus 400 ~~ht~~l~~~g~~ 412 (413)
T 1a12_A 400 GQHTVLLVKDKEQ 412 (413)
T ss_dssp SSEEEEEEEECSC
T ss_pred CCcEEEEEecCCC
Confidence 9999999988753
No 8
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=3.8e-42 Score=404.06 Aligned_cols=236 Identities=26% Similarity=0.492 Sum_probs=218.4
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
|||..|++||+++|+||+||.|.+||||.+... ....|+.+..+.+.+|++|+||. +|+++|+++|
T Consensus 127 a~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~~~~~~i~~va~G~------------~hs~alt~~G 192 (406)
T 4d9s_A 127 ACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE--DSLVPQKIQAFEGIRIKMVAAGA------------EHTAAVTEDG 192 (406)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSSSCC--CEEEEEECGGGTTCCEEEEEECS------------SEEEEEETTS
T ss_pred EEChhheEEEcCCCcEEEeCCCCCccCCCCCCC--CcccceEecccCCCcEEEEecCC------------CeEEEEeCCC
Confidence 699999999999999999999999999999853 56789999999999999999999 9999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC----------
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD---------- 148 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~---------- 148 (1149)
+||+||.|.+||||.+. ......|..+..+.+.+|++|+||..|+++|+++|+||+||.|. |+|.+
T Consensus 193 ~v~~wG~n~~GqlG~g~--~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 193 DLYGWGWGRYGNLGLGD--RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp CEEEEECCTTSTTCSSS--SCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred CEEEeeCCCCCCCCCCC--CCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 99999999999999997 45667899999998899999999999999999999999999998 88875
Q ss_pred ----CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEec
Q psy16692 149 ----PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKS 224 (1149)
Q Consensus 149 ----~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~ 224 (1149)
....|++|+||..|+++ |+++|+||+||.|.+||||.+...... .|++|..+.+.+|++|+||.+|++|++++
T Consensus 271 v~~~~~~~v~~i~~G~~hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~-~p~~v~~~~~~~v~~va~G~~hs~alt~~ 347 (406)
T 4d9s_A 271 LEALSNSFISQISGGWRHTMA--LTSDGKLYGWGWNKFGQVGVGNNLDQC-SPVQVRFPDDQKVVQVSCGWRHTLAVTER 347 (406)
T ss_dssp CGGGTTSCEEEEEECSSEEEE--EETTSCEEEEECCTTSTTCSSSSSCEE-EEEEECCGGGCCEEEEEECSSEEEEEETT
T ss_pred ecccCCCCEEEEEecCCEEEE--EcCCCeEEEeeCCCCCCCCCCCCCCCc-cCEEEeccCCCcEEEEEeCCCeEEEEeCC
Confidence 34569999999999999 999999999999999999998877666 89999877778999999999999999998
Q ss_pred CCcEEEEecCCCCCCCCCCC-CcccceEecCCC
Q psy16692 225 VSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPW 256 (1149)
Q Consensus 225 ~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~ 256 (1149)
|+||+||.|.+||||.+.. +...|+.|+.+.
T Consensus 348 -G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 348 -NNVFAWGRGTNGQLGIGESVDRNFPKIIEALS 379 (406)
T ss_dssp -SCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred -CCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence 9999999999999999999 888999988543
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.9e-42 Score=404.48 Aligned_cols=273 Identities=22% Similarity=0.271 Sum_probs=233.4
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
|||..|+++++++|+||+||.|.+||||.+... .....|..|..+.+ |++|+||. .|+++|+++|
T Consensus 30 a~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~-~~~~~p~~v~~l~~--v~~va~G~------------~h~~~l~~~G 94 (423)
T 3mvd_K 30 AFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDI-LERKRLSPVAGIPD--AVDISAGG------------MHNLVLTKSG 94 (423)
T ss_dssp CCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSC-CEEEEEEECCSCSS--EEEEEECS------------SEEEEEETTS
T ss_pred ecCCccceeecCCCcEEEEeCCCCCCCCCCCCC-ccCcCCeEccCCCC--ceEEeeCC------------CeEEEEeCCC
Confidence 699999999999999999999999999999742 45678898988776 89999999 9999999999
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecC--CC--CCCCC--------
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHK--EN--GCGSD-------- 148 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~--n~--qlG~~-------- 148 (1149)
+||+||.|.+||||.+.........|..|... .+|++|+||..|+++|+++|+||+||. |. |+|.+
T Consensus 95 ~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p 172 (423)
T 3mvd_K 95 DIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP 172 (423)
T ss_dssp CEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEE
T ss_pred eEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCcee
Confidence 99999999999999997544456788888743 479999999999999999999999998 65 77753
Q ss_pred ----CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCC----------CcccccEEecccCCCCEEEEEec
Q psy16692 149 ----PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSN----------TTVTKPQRVESLVNLPIALIACG 214 (1149)
Q Consensus 149 ----~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~----------~~~~~P~~V~~l~~~~V~~Ia~G 214 (1149)
...+|++|+||..|+++ |+++|+||+||.|.+||||++... .....|+.+......+|++|+||
T Consensus 173 ~~~~~~~~i~~va~G~~hs~a--lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g 250 (423)
T 3mvd_K 173 IDLMEGTVCCSIASGADHLVI--LTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT 250 (423)
T ss_dssp EESSTTCCEEEEEECSSEEEE--EETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE
T ss_pred eEecCCCcEEEEecCCCeEEE--EecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC
Confidence 45689999999999999 999999999999999999987653 23347899987777889999999
Q ss_pred CCeEEEEEecCCcEEEEecCCCCCCCCCCC-CcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEE
Q psy16692 215 ANHSFVLSKSVSRLYAFGIGSAVQLDSPKS-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTV 293 (1149)
Q Consensus 215 ~~hs~alt~~~G~Vy~wG~N~~GQLG~g~~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~ 293 (1149)
.+|++++..++|+||+||.|.+||||.+.. ....+.++... ..+|++|+||.+|+++++
T Consensus 251 ~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--------------------~~~v~~ia~G~~ht~alt 310 (423)
T 3mvd_K 251 NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE--------------------LKDIRHIAGGQHHTVILT 310 (423)
T ss_dssp TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC--------------------CCSEEEEEECSSEEEEEE
T ss_pred CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC--------------------CCCeEEEEcccCeEEEEe
Confidence 999999964449999999999999999655 33333333210 124889999999999999
Q ss_pred ecCCC-CCCCcccccccccC
Q psy16692 294 TKSSD-GVLSDDFRVLNPAT 312 (1149)
Q Consensus 294 ~~~~~-~~~~~~~~~~~~~~ 312 (1149)
.++.. .|+.+++++++...
T Consensus 311 ~~G~v~~wG~n~~GqLG~g~ 330 (423)
T 3mvd_K 311 TDLKCSVVGRPEYGRLGLGD 330 (423)
T ss_dssp TTCCEEEEECCGGGTTCSSS
T ss_pred CCCcEEEEECCCCCCCCCCC
Confidence 99887 99999999997654
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=407.64 Aligned_cols=259 Identities=25% Similarity=0.391 Sum_probs=222.0
Q ss_pred CCCCceEEEEeeCCcEEEEeC--CCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEee
Q psy16692 1 MTGLWHSLALNDCGEVFTWGG--DTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALND 78 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~--N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~ 78 (1149)
|||..|++||+++|+||+||. |.+||||.+.........|..|..+.+.+|++|+||. +|+++|++
T Consensus 154 a~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~------------~hs~alt~ 221 (473)
T 3of7_A 154 AATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK------------DHILFLDE 221 (473)
T ss_dssp EECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS------------SEEEEEET
T ss_pred EccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC------------CeEEEEeC
Confidence 699999999999999999998 7899999976544567889999999999999999999 99999999
Q ss_pred CCcEEEEECCCCCCCCCCCCCC--cccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC------
Q psy16692 79 CGEVFTWGGDTHGQLGLESADK--KSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD------ 148 (1149)
Q Consensus 79 ~G~Vy~WG~N~~GQLG~g~~~~--~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~------ 148 (1149)
+|+||+||.|.+||||.+.... .....|..+.. .+|++|+||..|+++|+++|+||+||.|. |+|.+
T Consensus 222 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~ 298 (473)
T 3of7_A 222 EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG 298 (473)
T ss_dssp TSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTT
T ss_pred CCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCC
Confidence 9999999999999999986322 12456776643 57999999999999999999999999998 88864
Q ss_pred ------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCC-------------CcccccEEeccc
Q psy16692 149 ------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSN-------------TTVTKPQRVESL 203 (1149)
Q Consensus 149 ------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~-------------~~~~~P~~V~~l 203 (1149)
...+|++|+||..|+++ |+++|+||+||.|.+||||.+... .....|+.+..+
T Consensus 299 ~~~~~P~~v~~~~~~~i~~ia~G~~hs~~--lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~ 376 (473)
T 3of7_A 299 ALVTKPKRLALPDNVVIRSIAAGEHHSLI--LSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV 376 (473)
T ss_dssp CEEEEEEECCCCTTCCEEEEEECSSEEEE--EETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS
T ss_pred ceeeccccccccCCccEEEEEeCCCeEEE--EeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC
Confidence 12579999999999999 999999999999999999986531 122356776644
Q ss_pred CCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCCCCCC-C-CcccceEecCCCcCCccccccCccccccccCCcceEE
Q psy16692 204 VNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPK-S-VHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKK 281 (1149)
Q Consensus 204 ~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQLG~g~-~-~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~ 281 (1149)
. +|++|+||.+|++|++++ |+||+||.|.+||||++. . +...|++|..+. ....+|..
T Consensus 377 ~--~v~~Ia~G~~hs~al~~~-G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~-----------------~~~~~v~~ 436 (473)
T 3of7_A 377 P--KFKSVAAGSHHSVAVAQN-GIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTA-----------------TQDHNIIL 436 (473)
T ss_dssp C--CEEEEEECSSEEEEEETT-SCEEEEECCTTCTTCCCSCCSCEEEEEECCCTT-----------------TTTEEEEE
T ss_pred C--ceEEEEeCCCeEEEEeCC-CcEEEeeCCCCCCCCCCCCCccccCCeEecccc-----------------cCCCeEEE
Confidence 3 699999999999999998 999999999999999999 5 888899887432 23557999
Q ss_pred EeecCCeEEEEEecC
Q psy16692 282 IYSGGDHSIVTVTKS 296 (1149)
Q Consensus 282 IaaG~~hS~~l~~~~ 296 (1149)
|+||++||+++..+.
T Consensus 437 v~cG~~~s~~~~~~~ 451 (473)
T 3of7_A 437 VGCGGQFSVSGGVKL 451 (473)
T ss_dssp EEECSSEEEEEEEEC
T ss_pred EeeCCCeEEEEEecC
Confidence 999999999998753
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.5e-37 Score=346.22 Aligned_cols=218 Identities=28% Similarity=0.367 Sum_probs=185.9
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
|||..|+++|+ +|+||+||.|.+||||.... ...+|++|+||. +|+++|+ +|
T Consensus 30 a~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~--------------~~~~i~~ia~G~------------~hs~~l~-~G 81 (282)
T 3qhy_B 30 AGGYFHGLALK-GGKVLGWGANLNGQLTMPAA--------------TQSGVDAIAAGN------------YHSLALK-DG 81 (282)
T ss_dssp EECSSEEEEEE-TTEEEEEECCSSSTTSCCGG--------------GGSCCCEEEECS------------SEEEEEE-TT
T ss_pred EeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc--------------CCCCEEEEEeCC------------CEEEEEE-CC
Confidence 68999999998 99999999999999995321 122589999999 9999996 99
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC--CCCCeEEE
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD--PSQGVQSN 156 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~--~~~~V~~I 156 (1149)
+||+||.|.+||||... .+ ..+|++|+||..|+++|+ +|+||+||.|. |+|.+ ...+|++|
T Consensus 82 ~v~~wG~n~~Gqlg~P~----------~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i 146 (282)
T 3qhy_B 82 EVIAWGGNEDGQTTVPA----------EA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTAL 146 (282)
T ss_dssp EEEEEECCTTSTTCCCG----------GG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEE
T ss_pred EEEEeeCCCCCCCCCCc----------cc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEE
Confidence 99999999999998532 22 237999999999999999 99999999998 88876 56789999
Q ss_pred EecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCC
Q psy16692 157 LVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSA 236 (1149)
Q Consensus 157 s~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~ 236 (1149)
+||..|+++ ++ +|+||+||.|.+|||| .|..+ ..+|++|+||.+|++++ ++ |+||+||.|.+
T Consensus 147 ~~G~~~~~~--l~-~G~v~~wG~n~~gqlg---------~p~~~----~~~v~~i~~G~~hs~al-~~-G~v~~wG~n~~ 208 (282)
T 3qhy_B 147 DGGVYTALA--VK-NGGVIAWGDNYFGQTT---------VPAEA----QSGVDDVAGGIFHSLAL-KD-GKVIAWGDNRY 208 (282)
T ss_dssp EECSSEEEE--EE-TTEEEEEECCTTSTTS---------CCGGG----GSSEEEEEECSSEEEEE-ET-TEEEEEECCTT
T ss_pred EcccCEEEE--EE-CCEEEEecCCCCCCCC---------Cceec----CCCeEEEEecCCEEEEE-EC-CeEEEEECCCC
Confidence 999999999 98 8999999999999998 23332 35799999999999999 76 99999999999
Q ss_pred CCCCCCCCCcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecCCC-CCCCcccccccc
Q psy16692 237 VQLDSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD-GVLSDDFRVLNP 310 (1149)
Q Consensus 237 GQLG~g~~~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~-~~~~~~~~~~~~ 310 (1149)
||||.+.. ...+|++|+||.+|+++++ ++.. .|+.+++++++.
T Consensus 209 gqlg~p~~------------------------------~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v 252 (282)
T 3qhy_B 209 KQTTVPTE------------------------------ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSV 252 (282)
T ss_dssp STTCCCGG------------------------------GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGG
T ss_pred CCCCCCcc------------------------------cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccccC
Confidence 99986422 0114789999999999999 7766 888888877644
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.5e-35 Score=331.82 Aligned_cols=203 Identities=27% Similarity=0.410 Sum_probs=173.0
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCC
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCG 80 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G 80 (1149)
|||..|++||+ +|+||+||.|.+||||... .+ ..+|++|+||. +|+++|+ +|
T Consensus 69 a~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~----------~~----~~~v~~ia~G~------------~hs~al~-~G 120 (282)
T 3qhy_B 69 AAGNYHSLALK-DGEVIAWGGNEDGQTTVPA----------EA----RSGVDAIAAGA------------WASYALK-DG 120 (282)
T ss_dssp EECSSEEEEEE-TTEEEEEECCTTSTTCCCG----------GG----SSSEEEEEEET------------TEEEEEE-TT
T ss_pred EeCCCEEEEEE-CCEEEEeeCCCCCCCCCCc----------cc----CCCeEEEECcC------------CEEEEEe-CC
Confidence 69999999996 9999999999999999532 22 13699999999 9999999 99
Q ss_pred cEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC--CCCCC--CCCCeEEE
Q psy16692 81 EVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN--GCGSD--PSQGVQSN 156 (1149)
Q Consensus 81 ~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~~--~~~~V~~I 156 (1149)
+||+||.|.+||||... ....+|++|+||..|+++|+ +|+||+||.|. |+|.+ ...+|++|
T Consensus 121 ~v~~wG~n~~gqlg~~~--------------~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i 185 (282)
T 3qhy_B 121 KVIAWGDDSDGQTTVPA--------------EAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQSGVDDV 185 (282)
T ss_dssp EEEEEECCTTSTTSCCG--------------GGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEE
T ss_pred eEEEecCCCCCcCCCCc--------------cCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCceecCCCeEEE
Confidence 99999999999998542 11246999999999999999 89999999998 88876 45689999
Q ss_pred EecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCC
Q psy16692 157 LVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSA 236 (1149)
Q Consensus 157 s~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~ 236 (1149)
+||..|+++ + ++|+||+||.|.+||||.+. . . ..+|++|+||.+|+++++ + |+||+||.|.+
T Consensus 186 ~~G~~hs~a--l-~~G~v~~wG~n~~gqlg~p~---------~--~--~~~v~~i~~G~~h~~al~-~-g~v~~wG~n~~ 247 (282)
T 3qhy_B 186 AGGIFHSLA--L-KDGKVIAWGDNRYKQTTVPT---------E--A--LSGVSAIASGEWYSLALK-N-GKVIAWGSSRT 247 (282)
T ss_dssp EECSSEEEE--E-ETTEEEEEECCTTSTTCCCG---------G--G--GSSCCEEEECSSCEEEEE-T-TEEEEESTTCC
T ss_pred EecCCEEEE--E-ECCeEEEEECCCCCCCCCCc---------c--c--CCCceEEEcCCCEEEEEE-C-CEEEEecCCCC
Confidence 999999999 8 89999999999999998421 1 1 135899999999999999 7 99999999999
Q ss_pred CCCCCCCCCcccceEecCCCcCCccccccCccccccccCCcceEEEeecCCeEEEEEecCCC
Q psy16692 237 VQLDSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSD 298 (1149)
Q Consensus 237 GQLG~g~~~~~~P~~V~~p~~~~~~~~~~~~~~~~~~~~~~~V~~IaaG~~hS~~l~~~~~~ 298 (1149)
||++... .|+.|+||..|+++++.+...
T Consensus 248 gq~~v~~----------------------------------~v~~iaaG~~h~~al~~~~~~ 275 (282)
T 3qhy_B 248 APSSVQS----------------------------------GVSSIEAGPNAAYALKGGSGS 275 (282)
T ss_dssp CCGGGSS----------------------------------CEEEEEECSSCEEEEEC----
T ss_pred ccccCCC----------------------------------CcEEEEECcCeEEEEecCCCC
Confidence 9986421 278999999999999987654
No 13
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.94 E-value=7.7e-27 Score=268.32 Aligned_cols=160 Identities=30% Similarity=0.537 Sum_probs=138.6
Q ss_pred CCceEEEEEeCCCchhHhHhhhh---------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc--
Q psy16692 651 LSQFYVLQRDRTFELVGITVLLL---------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH-- 719 (1149)
Q Consensus 651 ~~~~l~l~VrR~~~l~~ds~~~l---------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~-- 719 (1149)
.+|+++|+|||+ +|++||++++ +++++++|+ |.||+|.|+||++|
T Consensus 2 ~~~~~~l~V~R~-~i~eds~~~l~~~~~~~~~~lk~~l~V~-----------------------F~gE~G~D~GG~~rEf 57 (358)
T 1c4z_A 2 LNPYLRLKVRRD-HIIDDALVRLEMIAMENPADLKKQLYVE-----------------------FEGEQGVDEGGVSKEF 57 (358)
T ss_dssp -CCSCCEEECSS-SHHHHHHHHHHHHHHSCGGGGGSCCCEE-----------------------ETTCCCCCSSHHHHHH
T ss_pred CCCeEEEEEcCC-cHHHHHHHHHHHHhccCHHHhcCceEEE-----------------------ECCCcCcCCCccHHHH
Confidence 368999999999 9999999986 567888888 77888888888888
Q ss_pred ------------ccceee-cCCCeEEcCCCcccchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhhh
Q psy16692 720 ------------YGITEY-EETRSIWFSEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDL 786 (1149)
Q Consensus 720 ------------yglf~~-~~~~~~~~~~~s~~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~l 786 (1149)
||||.+ ++++.+||||.+.++..+|+|+|+++|+||||++++|++||++|||+|||.+++++||+++
T Consensus 58 f~ll~~el~~p~~glF~~~~~~~~~~~np~s~~~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~ 137 (358)
T 1c4z_A 58 FQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDS 137 (358)
T ss_dssp HHHHHHHHTSGGGCSEEEETTTTEEEECTTCCSCHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHcCCcCCceeecCCCCeEeeCCccccchHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHh
Confidence 888876 4578899999998888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 787 SPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 787 dp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
||++|+||+||++++. |+++.|++||++.+. +.+++.....|.+++..
T Consensus 138 Dp~l~~sL~~l~~~~~-d~~~~l~ltF~~~~~-----------~~~G~~~~~eL~p~G~~ 185 (358)
T 1c4z_A 138 HPVLYQSLKDLLEYEG-NVEDDMMITFQISQT-----------DLFGNPMMYDLKENGDK 185 (358)
T ss_dssp SHHHHHHHHHHHHCCS-CHHHHTCCBSEEEEC-----------CTTTCCEEEESSTTTTT
T ss_pred CHHHHHHHHHHHhcCC-chhhhccceEEEecc-----------ccCCCeeeeecCCCCcc
Confidence 9999999999999965 888889999985431 24555567777766543
No 14
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.92 E-value=1.7e-25 Score=260.05 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=126.7
Q ss_pred CCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc-----
Q psy16692 651 LSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH----- 719 (1149)
Q Consensus 651 ~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~----- 719 (1149)
.++.++|+|||+ +|++||++++ +++++|+|. |.||+|.|+||++|
T Consensus 44 ~~~~~~l~VrR~-~i~eds~~~l~~~~~~~lk~~l~V~-----------------------F~gE~G~D~GG~~rEff~l 99 (405)
T 3h1d_A 44 RKEDMAVHVRRD-HVFEDSYRELHRKSPEEMKNRLYIV-----------------------FEGEEGQDAGGLLREWYMI 99 (405)
T ss_dssp CCCEEEEEECGG-GHHHHHHHHHTTSCTTGGGSEEEEE-----------------------ETTCCSCCCTTHHHHHHHH
T ss_pred CCCceEEEEeCc-hHHHHHHHHHHccCHHHhhcceEEE-----------------------ECCCCCcCCChhHHHHHHH
Confidence 457899999999 9999999999 788999999 77788888888876
Q ss_pred ---------ccceeecC-CC-eEEcCCCcc---cchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhh
Q psy16692 720 ---------YGITEYEE-TR-SIWFSEDTF---EDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKD 785 (1149)
Q Consensus 720 ---------yglf~~~~-~~-~~~~~~~s~---~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ 785 (1149)
||||++.+ ++ ++|+||.+. ++..+|+|+|+++|+||||+.++|++||++|||+|||.+++++||++
T Consensus 100 l~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~ 179 (405)
T 3h1d_A 100 ISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMES 179 (405)
T ss_dssp HHHHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHH
T ss_pred HHHHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHH
Confidence 78887643 34 456899874 34568999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHh
Q psy16692 786 LSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLIL 830 (1149)
Q Consensus 786 ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~ 830 (1149)
+||++|+||+||++++.+|+ .+++||+..+..++...-..|++
T Consensus 180 ~Dp~l~~sL~~ll~~~~~~l--~l~ltF~~~~~~~G~~~~veL~p 222 (405)
T 3h1d_A 180 EDYHFYQGLVYLLENDVSTL--GYDLTFSTEVQEFGVAEVRDLKP 222 (405)
T ss_dssp HCHHHHHHHHHHHHSCGGGS--SSCEEEETTTCCEEECCGGGGSS
T ss_pred hhHHHHHHHhhhhcCChhhh--cceeEEEEEeecCCceeeEeecC
Confidence 99999999999999865443 37899997665555443333333
No 15
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-25 Score=262.96 Aligned_cols=159 Identities=21% Similarity=0.308 Sum_probs=125.8
Q ss_pred CcCCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc---
Q psy16692 649 LVLSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH--- 719 (1149)
Q Consensus 649 ~~~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~--- 719 (1149)
...++.+.|+|||+ +|+|||++++ +++++|+|+ |.||+|.|+||++|
T Consensus 69 ~~~~~~~~l~VrR~-~i~eds~~~l~~~~~~~lk~~l~V~-----------------------F~gE~G~D~GG~~rEff 124 (429)
T 3olm_A 69 RILPGQCHIKVRRK-NIFEDAYQEIMRQTPEDLKKRLMIK-----------------------FDGEEGLDYGGVSREFF 124 (429)
T ss_dssp SCCSSCEEEEEETT-SHHHHHHHHHHHSCHHHHTSCEEEE-----------------------EETTC--------CHHH
T ss_pred cCCCCceEEEEecc-hhHHHHHHHHHhcChHhcCcceEEE-----------------------ECCCCccCCChhHHHHH
Confidence 44567899999999 9999999998 789999999 56666667777666
Q ss_pred -----------ccceeec--CCCeEEcCCCcc---cchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccch
Q psy16692 720 -----------YGITEYE--ETRSIWFSEDTF---EDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDL 783 (1149)
Q Consensus 720 -----------yglf~~~--~~~~~~~~~~s~---~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL 783 (1149)
||||++. ++.++|+||.+. ++.++|+|+|+++|+||||+.++|++||++|||+|||.+++++||
T Consensus 125 ~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~~~~l~Dl 204 (429)
T 3olm_A 125 FLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRKKVVLQDM 204 (429)
T ss_dssp HHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHcCccCCCceeeCCCCeeEeeCCcccCCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCCCCCHHHH
Confidence 6777663 344678999975 445799999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 784 KDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 784 ~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
+++||++|+||+||+++ |+++++++||++.+.. +....+..|.+++..
T Consensus 205 ~~~Dp~l~~sL~~ll~~---d~~~~l~l~F~~~~~~------------~g~~~~veL~p~G~~ 252 (429)
T 3olm_A 205 EGVDAEVYNSLNWMLEN---SIDGVLDLTFSADDER------------FGEVVTVDLKPDGRN 252 (429)
T ss_dssp HHHCHHHHHHHHHHTTS---CCTTTCCCBSEEEEEE------------TTEEEEEESSTTGGG
T ss_pred HHHhHHHHHHHHHHHhC---CHHHhhcCceEEEecc------------CCceeeEeccCCCcc
Confidence 99999999999999986 5667799999955433 344556777766543
No 16
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.91 E-value=4.6e-25 Score=255.48 Aligned_cols=157 Identities=22% Similarity=0.326 Sum_probs=129.8
Q ss_pred CCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc-----
Q psy16692 651 LSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH----- 719 (1149)
Q Consensus 651 ~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~----- 719 (1149)
.+++++|+|||+ +|++||++++ +++++++|. |.||+|.|+||++|
T Consensus 21 ~~~~~~l~V~R~-~i~~ds~~~l~~~~~~~lk~~l~V~-----------------------F~gE~G~D~GG~~rEff~l 76 (380)
T 1zvd_A 21 QAGHCRIEVSRE-EIFEESYRQVMKMRPKDLWKRLMIK-----------------------FRGEEGLDYGGVAREWLYL 76 (380)
T ss_dssp SSCEEEEEECST-THHHHHHHHHHTSCGGGGGSEEEEE-----------------------ETTCCCSCHHHHHHHHHHH
T ss_pred CCCceEEEEccC-CHHHHHHHHHHccCHHHhcCceEEE-----------------------ECCCcCcCCCccHHHHHHH
Confidence 357899999999 9999999998 688999999 66777777777766
Q ss_pred ---------ccceeecCC--CeEEcCCCcc---cchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhh
Q psy16692 720 ---------YGITEYEET--RSIWFSEDTF---EDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKD 785 (1149)
Q Consensus 720 ---------yglf~~~~~--~~~~~~~~s~---~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ 785 (1149)
||||.+.++ .++|+||.+. ++..+|+|+|+++|+||||++++|++||++|||+|||.+++++||++
T Consensus 77 l~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~ 156 (380)
T 1zvd_A 77 LSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMEL 156 (380)
T ss_dssp HHHHHTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCSTTHHH
T ss_pred HHHHHcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCCHHHHHH
Confidence 777776443 3467999975 34568999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 786 LSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 786 ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
+||++|+||+||+++ |+++++++||++.++. ++......|.+++..
T Consensus 157 ~Dp~l~~sL~~ll~~---d~~~~l~ltF~~~~~~------------~g~~~~veL~p~G~~ 202 (380)
T 1zvd_A 157 VDPDLHNSLVWILEN---DITGVLDHTFCVEHNA------------YGEIIQHELKPNGKS 202 (380)
T ss_dssp HCHHHHHHHHHHHHS---CCTTTSCCCSEEEEEE------------TTEEEEEESSTTCCC
T ss_pred hCHHHHHHHHHHHhC---CccccccceeEEeeec------------CCcEeEEecCCCCCC
Confidence 999999999999987 4566799999954432 344556777766543
No 17
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.91 E-value=8.5e-25 Score=252.91 Aligned_cols=158 Identities=17% Similarity=0.244 Sum_probs=131.7
Q ss_pred CCceEEEEEeCCCchhHhHhhhh------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc-----
Q psy16692 651 LSQFYVLQRDRTFELVGITVLLL------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH----- 719 (1149)
Q Consensus 651 ~~~~l~l~VrR~~~l~~ds~~~l------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~----- 719 (1149)
.++.++|+|||+ +|++||++++ +++++++|. |.||+|.|+||++|
T Consensus 20 ~~~~~~l~V~R~-~i~~ds~~~l~~~~~~~l~~~l~V~-----------------------F~gE~G~D~GG~~rEff~l 75 (374)
T 1nd7_A 20 LPSHVKINVSRQ-TLFEDSFQQIMALKPYDLRRRLYVI-----------------------FRGEEGLDYGGLAREWFFL 75 (374)
T ss_dssp CSSEEEEEECTT-THHHHHHHHHHTSCGGGGGSEEEEE-----------------------ETTTCCCCCTHHHHHHHHH
T ss_pred CCCCeEEEECCC-CHHHHHHHHHHhcCHHhccceEEEE-----------------------ECCCCCcCCCccHHHHHHH
Confidence 478999999999 9999999998 688999999 77888888888887
Q ss_pred ---------ccceeec--CCCeEEcCCCccc---chhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccchhh
Q psy16692 720 ---------YGITEYE--ETRSIWFSEDTFE---DQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKD 785 (1149)
Q Consensus 720 ---------yglf~~~--~~~~~~~~~~s~~---~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL~~ 785 (1149)
||||++. ++..+|+||.+.. +..+|+|+|+++|+||||++++|++||++|||+|||.+++++||++
T Consensus 76 l~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~ 155 (374)
T 1nd7_A 76 LSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLES 155 (374)
T ss_dssp HHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHT
T ss_pred HHHHHcCCccccccccCCCCceeccCCcccCCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCCHHHHHH
Confidence 8888764 3345789999753 3468999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 786 LSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 786 ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
+||++|+||+||++++.+|+ .+++||+..+.. ++......|.+++..
T Consensus 156 ~Dp~l~~sL~~l~~~~~~~~--~l~l~F~~~~~~------------~G~~~~veL~p~G~~ 202 (374)
T 1nd7_A 156 IDTEFYNSLIWIRDNNIEEC--GLEMYFSVDMEI------------LGKVTSHDLKLGGSN 202 (374)
T ss_dssp TCHHHHHHHHHHHSSCSCSS--CCCCBSEECCCS------------STTCCCEESSTTGGG
T ss_pred hhHHHHHhhhhhccCChhhh--hcceeEEEeecc------------CCceeeEecCCCCcC
Confidence 99999999999999977665 388999854332 333445566665533
No 18
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.90 E-value=9.2e-24 Score=245.34 Aligned_cols=156 Identities=19% Similarity=0.306 Sum_probs=126.7
Q ss_pred CCceEEEEEeCCCchhHhHhhhh-------ccCCceEEEEehhhHHHHHHhhcCCCCCcCCCCCCccccCCCcccc----
Q psy16692 651 LSQFYVLQRDRTFELVGITVLLL-------VVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINH---- 719 (1149)
Q Consensus 651 ~~~~l~l~VrR~~~l~~ds~~~l-------~l~~~l~v~~~~e~~~~l~~~~~~~~~~~f~~f~ge~~~d~gG~~~---- 719 (1149)
.++.++|+|||+ +|++||++++ .++++++|. |.||+|.|+||++|
T Consensus 39 ~~~~~~l~V~R~-~i~eds~~~l~~~~~~~~lk~~l~V~-----------------------F~gE~G~D~GG~~rEff~ 94 (392)
T 2oni_A 39 IPNRFEMKLHRN-NIFEESYRRIMSVKRPDVLKARLWIE-----------------------FESEKGLDYGGVAREWFF 94 (392)
T ss_dssp SCSEEEEEECGG-GHHHHHHHHHHHCSCGGGGGSEEEEE-----------------------EC-CCSSCHHHHHHHHHH
T ss_pred CCCCEEEEEcCC-chHHHHHHHHHccCcHHhhCccEEEE-----------------------ECCCccccCCccHHHHHH
Confidence 367899999999 9999999999 367889988 66777777777766
Q ss_pred ----------ccceeec--CCCeEEcCCCcc----cchhhHHHHHHHHHHhhhcCceeccCCcHHHHHHHhCCCCCccch
Q psy16692 720 ----------YGITEYE--ETRSIWFSEDTF----EDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDL 783 (1149)
Q Consensus 720 ----------yglf~~~--~~~~~~~~~~s~----~~~~~f~~iG~l~glAly~~~~ld~~F~~~fykkLLg~~~~l~DL 783 (1149)
||||++. ++..+|+||.+. ++..+|+|+|+++|+||||++++|++||++|||+|||.+++++||
T Consensus 95 ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~K~llg~~~~l~Dl 174 (392)
T 2oni_A 95 LLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMMLGKQITLNDM 174 (392)
T ss_dssp HHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCHHHHHHHTTCCCCTHHH
T ss_pred HHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchHHHHHHHhCCCCCHHHH
Confidence 7777653 344678999974 345689999999999999999999999999999999999999999
Q ss_pred hhhCHHHHHHHHHHHhCCCCCchhhhcceehhhhhccCchhhHHHHhhhccEEEEEecCCCcc
Q psy16692 784 KDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPGVV 846 (1149)
Q Consensus 784 ~~ldp~l~~sL~~ll~~~~~dv~~~~~ltF~~wws~l~~~~F~rLV~~~k~~I~~~L~~~~~~ 846 (1149)
+++||++|+||+||++++. ++ ++|||++... .++......|.+++..
T Consensus 175 ~~~Dp~l~~sL~~l~~~d~---~~-l~L~F~v~~~------------~~G~~~~veL~p~G~~ 221 (392)
T 2oni_A 175 ESVDSEYYNSLKWILENDP---TE-LDLMFCIDEE------------NFGQTYQVDLKPNGSE 221 (392)
T ss_dssp HTTCHHHHHHHHHHHHSCC---GG-GCCBSEEEEE------------ETTEEEEEESSTTGGG
T ss_pred HHhCHHHHHHHHHHhcCCh---hH-ceeeEEEeee------------cCCceeEEecCCCCcc
Confidence 9999999999999999854 33 7889984322 3445556777766543
No 19
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.89 E-value=2.8e-23 Score=241.41 Aligned_cols=136 Identities=24% Similarity=0.518 Sum_probs=110.2
Q ss_pred cccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCchHHHHHHHHhcCCcccccCceEE
Q psy16692 939 CNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKV 1018 (1149)
Q Consensus 939 ~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v 1018 (1149)
-+=|. ++|+.|.++|+. .++ +.+. ....+.++|+|||++|+|||++++.+.++.+||++|+|
T Consensus 18 ~~~~~-~~f~~k~~~F~~--~l~---~~~~------------~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V 79 (405)
T 3h1d_A 18 FQGPH-MDFDVKRKYFRQ--ELE---RLDE------------GLRKEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYI 79 (405)
T ss_dssp GCSTT-SCHHHHHHHHHH--HHH---HHTT------------TCCCCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEE
T ss_pred hcCCC-cCHHHHHHHHHH--HHH---hhhc------------CCCCCceEEEEeCchHHHHHHHHHHccCHHHhhcceEE
Confidence 33454 589999999982 111 1111 11235799999999999999999999899999999999
Q ss_pred ecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCceee-cCCchhhhhhhhhhcccccccccc
Q psy16692 1019 NDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIW-FSEDTFEDQNMYFLIGKEYVPCTY 1097 (1149)
Q Consensus 1019 ~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~ 1097 (1149)
+|.||+|+|+||++||||++|++|+|||+||||+++++++..| +||.+
T Consensus 80 ------------~F~gE~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s------------------- 128 (405)
T 3h1d_A 80 ------------VFEGEEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSS------------------- 128 (405)
T ss_dssp ------------EETTCCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC--------------------
T ss_pred ------------EECCCCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCcc-------------------
Confidence 9999999999999999999999999999999999988776544 66622
Q ss_pred ccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc
Q psy16692 1098 ISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV 1142 (1149)
Q Consensus 1098 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~ 1142 (1149)
. ..++++++|+|+|++||+||||+++
T Consensus 129 -----~--------------~~~~~l~~f~flGrliG~Al~~~~~ 154 (405)
T 3h1d_A 129 -----H--------------ANPNHLSYFKFVGRIVAKAVYDNRL 154 (405)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHTCC
T ss_pred -----c--------------cChhHHHHHHHHhHHHHHHHhCCCc
Confidence 1 1246789999999999999999999
No 20
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.87 E-value=1.3e-22 Score=233.35 Aligned_cols=111 Identities=41% Similarity=0.761 Sum_probs=99.3
Q ss_pred CCCceEEEEccCchHHHHHHHHh---cCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCC
Q psy16692 983 LNQYLEVEVSRDNIVEDTIRELA---QYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPK 1059 (1149)
Q Consensus 983 ~~~~l~~~v~R~~i~~d~~~~~~---~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~ 1059 (1149)
.+|+++|+|||++|+|||++++. ..++.+||++|+| +|.||+|+|+|||+||||+++++|+|||+
T Consensus 2 ~~~~~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V------------~F~gE~G~D~GG~~rEff~ll~~el~~p~ 69 (358)
T 1c4z_A 2 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYV------------EFEGEQGVDEGGVSKEFFQLVVEEIFNPD 69 (358)
T ss_dssp -CCSCCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCE------------EETTCCCCCSSHHHHHHHHHHHHHHTSGG
T ss_pred CCCeEEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEE------------EECCCcCcCCCccHHHHHHHHHHHHcCCc
Confidence 36899999999999999999984 4568999999999 99999999999999999999999999999
Q ss_pred CCceEEccCCceeecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhc
Q psy16692 1060 YGMFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYN 1139 (1149)
Q Consensus 1060 ~g~f~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~ 1139 (1149)
||||.++++++.+||||. +.+..++|+|+|+++|+||||
T Consensus 70 ~glF~~~~~~~~~~~np~-----------------------------------------s~~~~~~f~flG~lig~Al~~ 108 (358)
T 1c4z_A 70 IGMFTYDESTKLFWFNPS-----------------------------------------SFETEGQFTLIGIVLGLAIYN 108 (358)
T ss_dssp GCSEEEETTTTEEEECTT-----------------------------------------CCSCHHHHHHHHHHHHHHHHT
T ss_pred CCceeecCCCCeEeeCCc-----------------------------------------cccchHHHHhHHHHHHHHHHC
Confidence 999999999999999993 233457899999999999999
Q ss_pred Ccc-cCCC
Q psy16692 1140 YTV-RFPA 1146 (1149)
Q Consensus 1140 ~~~-~fP~ 1146 (1149)
+++ ++|+
T Consensus 109 ~~~ld~~f 116 (358)
T 1c4z_A 109 NCILDVHF 116 (358)
T ss_dssp TCCCCCCC
T ss_pred CCCcCCcC
Confidence 999 4444
No 21
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.86 E-value=2e-22 Score=234.21 Aligned_cols=139 Identities=23% Similarity=0.394 Sum_probs=112.3
Q ss_pred eeecccCeeeehhhHHHHhhHHHHHHHHHHhhhhhhhhhhhhcCCCCCCCceEEEEccCchHHHHHHHHhcCC-cccccC
Q psy16692 936 DFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYT-TNDFKK 1014 (1149)
Q Consensus 936 ~~~~~~PF~~~~~~K~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~R~~i~~d~~~~~~~~~-~~~l~~ 1014 (1149)
..+-..||.++++.|..+|+..- + ......++++|+|||++|+|||++++...+ ++.+|+
T Consensus 11 ~~~~~~p~~~~f~~k~~~f~~~l--------~-----------~~~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~ 71 (392)
T 2oni_A 11 RENLYFQGSREFKQKYDYFRKKL--------K-----------KPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKA 71 (392)
T ss_dssp ---CCSTTHHHHHHHHHHHHHHC--------C-----------CCSSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGS
T ss_pred hcccCCCccccHHHHHHHHHHHH--------h-----------cccCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCc
Confidence 55667999999999999998210 0 011235789999999999999999999875 456899
Q ss_pred ceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCceEEccCCce-eecCCchhhhhhhhhhcccccc
Q psy16692 1015 PLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRS-IWFSEDTFEDQNMYFLIGKEYV 1093 (1149)
Q Consensus 1015 ~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~ 1093 (1149)
+|+| +|.||+|+|+|||+||||+++++|+|||+||||.+++++++ +|+||.+..
T Consensus 72 ~l~V------------~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~------------- 126 (392)
T 2oni_A 72 RLWI------------EFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGL------------- 126 (392)
T ss_dssp EEEE------------EEC-CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHH-------------
T ss_pred cEEE------------EECCCccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCcccc-------------
Confidence 9999 99999999999999999999999999999999999876554 457774311
Q ss_pred ccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc
Q psy16692 1094 PCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV 1142 (1149)
Q Consensus 1094 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~ 1142 (1149)
...+++++|+|+|+++|+||||+++
T Consensus 127 ------------------------~~~~~l~~f~flG~lig~Al~~~~~ 151 (392)
T 2oni_A 127 ------------------------CNEDHLSYFTFIGRVAGLAVFHGKL 151 (392)
T ss_dssp ------------------------HCTTHHHHHHHHHHHHHHHHHHTCC
T ss_pred ------------------------ccHHHHHHHHhcchhhhhhhcCCcc
Confidence 1246788999999999999999998
No 22
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.8e-22 Score=236.83 Aligned_cols=114 Identities=33% Similarity=0.505 Sum_probs=91.8
Q ss_pred CCCceEEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCc
Q psy16692 983 LNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGM 1062 (1149)
Q Consensus 983 ~~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~ 1062 (1149)
..+.+.|+|||++|+|||++++.+.++.+||++|+| +|.||+|+|+|||+||||+++++|+|||+|||
T Consensus 71 ~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V------------~F~gE~G~D~GG~~rEff~ll~~elf~p~~gL 138 (429)
T 3olm_A 71 LPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMI------------KFDGEEGLDYGGVSREFFFLLSHEMFNPFYCL 138 (429)
T ss_dssp CSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEE------------EEETTC--------CHHHHHHHHHHTCGGGSS
T ss_pred CCCceEEEEecchhHHHHHHHHHhcChHhcCcceEE------------EECCCCccCCChhHHHHHHHHHHHHcCccCCC
Confidence 346899999999999999999999889999999999 99999999999999999999999999999999
Q ss_pred eEEccCCce-eecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCc
Q psy16692 1063 FKEYEETRS-IWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYT 1141 (1149)
Q Consensus 1063 f~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~ 1141 (1149)
|.++++++. +|+||.+ . ..++++++|+|+|++||+||||++
T Consensus 139 F~~~~~~~~~~~~np~s------------------------~--------------~~~~~l~~f~flG~lig~Al~~~~ 180 (429)
T 3olm_A 139 FEYSAYDNYTIQINPNS------------------------G--------------INPEHLNYFKFIGRVVGLGVFHRR 180 (429)
T ss_dssp EEESSSSSCCEEECGGG------------------------G--------------GSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred ceeeCCCCeeEeeCCcc------------------------c--------------CCHHHHHHHHHHHHHHHHHHhcCC
Confidence 999876553 4566632 1 124688999999999999999999
Q ss_pred c-cCCC
Q psy16692 1142 V-RFPA 1146 (1149)
Q Consensus 1142 ~-~fP~ 1146 (1149)
+ +.|+
T Consensus 181 ~ld~~f 186 (429)
T 3olm_A 181 FLDAFF 186 (429)
T ss_dssp CCCCCB
T ss_pred ccCCCc
Confidence 9 4444
No 23
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.86 E-value=3.8e-22 Score=230.81 Aligned_cols=113 Identities=26% Similarity=0.474 Sum_probs=99.3
Q ss_pred CCceEEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCce
Q psy16692 984 NQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMF 1063 (1149)
Q Consensus 984 ~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f 1063 (1149)
.++++|+|||++|++||++++.+.++.+||++|+| +|.||+|+|+|||+||||+++++|+|+|+||||
T Consensus 21 ~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V------------~F~gE~G~D~GG~~rEff~ll~~el~~p~~~lF 88 (374)
T 1nd7_A 21 PSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYV------------IFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLF 88 (374)
T ss_dssp SSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEE------------EETTTCCCCCTHHHHHHHHHHHHHHTCGGGSSE
T ss_pred CCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEE------------EECCCCCcCCCccHHHHHHHHHHHHcCCccccc
Confidence 47899999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEccCCce-eecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc
Q psy16692 1064 KEYEETRS-IWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV 1142 (1149)
Q Consensus 1064 ~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~ 1142 (1149)
.+++++++ +|+||. +. ..++++++|+|+|+++|+||||+++
T Consensus 89 ~~~~~~~~~~~~~p~------------------------s~--------------~~~~~l~~f~flG~lig~al~~~~~ 130 (374)
T 1nd7_A 89 EYAGKNNYCLQINPA------------------------ST--------------INPDHLSYFCFIGRFIAMALFHGKF 130 (374)
T ss_dssp EESSSSSCCEEECGG------------------------GG--------------GSTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccCCCCceeccCCc------------------------cc--------------CCHHHHHHHHHHHHHHHHHHhcCCe
Confidence 99876654 456663 21 1245789999999999999999998
Q ss_pred -cCCC
Q psy16692 1143 -RFPA 1146 (1149)
Q Consensus 1143 -~fP~ 1146 (1149)
++|+
T Consensus 131 ld~~f 135 (374)
T 1nd7_A 131 IDTGF 135 (374)
T ss_dssp CCCCC
T ss_pred eCCcC
Confidence 4444
No 24
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=227.22 Aligned_cols=113 Identities=32% Similarity=0.526 Sum_probs=99.1
Q ss_pred CCceEEEEccCchHHHHHHHHhcCCcccccCceEEecCCCcccCCcccccCccccCCCchHHHHHHHHHHHhcCCCCCce
Q psy16692 984 NQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMF 1063 (1149)
Q Consensus 984 ~~~l~~~v~R~~i~~d~~~~~~~~~~~~l~~~l~v~~~~~~~~~~~~~f~~E~g~d~GG~~~Eff~ll~~e~~~p~~g~f 1063 (1149)
.++++|+|||++|++||++++.+.++.+||++|+| +|.||+|+|+|||+||||+++++|+|+|+||||
T Consensus 22 ~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V------------~F~gE~G~D~GG~~rEff~ll~~el~~p~~gLF 89 (380)
T 1zvd_A 22 AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMI------------KFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLF 89 (380)
T ss_dssp SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEE------------EETTCCCSCHHHHHHHHHHHHHHHHTSGGGSSE
T ss_pred CCceEEEEccCCHHHHHHHHHHccCHHHhcCceEE------------EECCCcCcCCCccHHHHHHHHHHHHcCCcCCCe
Confidence 46899999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEccCCcee-ecCCchhhhhhhhhhccccccccccccccccchhhhhhcccccccCCccccchhhhhhHHHHHHHhcCcc
Q psy16692 1064 KEYEETRSI-WFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV 1142 (1149)
Q Consensus 1064 ~~~~~~~~~-~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~g~aiy~~~~ 1142 (1149)
.+++++++. |+||.+ . ..++++++|+|+|+++|+||||+++
T Consensus 90 ~~~~~~~~~~~~np~s------------------------~--------------~~~~~l~~f~flG~l~g~al~~~~~ 131 (380)
T 1zvd_A 90 QYSRDDIYTLQINPDS------------------------A--------------VNPEHLSYFHFVGRIMGMAVFHGHY 131 (380)
T ss_dssp EEETTEEEEEEECTTG------------------------G--------------GSTTHHHHHHHHHHHHHHHHHTTCC
T ss_pred eccCCCCeeeccCchh------------------------h--------------cChHHHHHHHHhHHHHHHHHhCCce
Confidence 998765543 466632 1 1246789999999999999999998
Q ss_pred -cCCC
Q psy16692 1143 -RFPA 1146 (1149)
Q Consensus 1143 -~fP~ 1146 (1149)
+.|+
T Consensus 132 ld~~f 136 (380)
T 1zvd_A 132 IDGGF 136 (380)
T ss_dssp CCCCC
T ss_pred eCCcC
Confidence 4444
No 25
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.73 E-value=0.09 Score=56.20 Aligned_cols=108 Identities=22% Similarity=0.378 Sum_probs=78.4
Q ss_pred CcEEE-EEeCCCeeEE-----Eec-------CceEEE----ecCCC------------CCCCC-----CCCCeEEEEecC
Q psy16692 115 VSVVQ-ACAGYSHCLV-----LTS-------SGVVTC----THKEN------------GCGSD-----PSQGVQSNLVQD 160 (1149)
Q Consensus 115 ~~I~~-Ia~G~~hs~a-----LT~-------~G~Vy~----wG~n~------------qlG~~-----~~~~V~~Is~G~ 160 (1149)
.+|.+ +.-|.+|.+. |+. ..+|+. ||.|. ..+.+ ....+..|+.-.
T Consensus 239 ~~V~D~~rIg~n~iv~~~~~~iv~t~~~Ta~~~kv~V~~In~ggniTltdV~~t~~v~nh~tg~~~~ansn~i~~VsG~y 318 (400)
T 4gbf_A 239 NHVIDSMSIGCTHIIMHSIDPLVAPEDYTSESSKVHVMEIIRNGNDTSFMVISPLWFDGRGNDVTANVNSNPIGGVSGLY 318 (400)
T ss_dssp TCEEEEEEECSSEEEEEEECTTSCGGGCCTTTEEEEEEEEEEETTEEEEEEECCCCBCTTSCBCHHHHHTSCCCCCBCSS
T ss_pred ceeeeeEEecccEEEEecccceeccCCCcceeeEEEEEEEecCCceEEEEeeceeEEecCCCCeEEEecCCccccccccc
Confidence 35777 9999999986 321 234554 66654 11111 336778888888
Q ss_pred CeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCCCCCC
Q psy16692 161 SHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL 239 (1149)
Q Consensus 161 ~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~~GQL 239 (1149)
.|.++ +--+|+++.||++++||+-.... ..+..++.+|.+.|+-+..- ..+--||......|
T Consensus 319 ~H~vv--i~gd~el~sFG~~sNGQ~~ip~t--------------agPfla~~AG~~fTVTVn~~-nyv~FWGDSPDNSL 380 (400)
T 4gbf_A 319 THYTV--MYGDGQIAFFGNNDNGQCDVDDH--------------AGPYIQLAAGHNFTVTVNTL-NQVMFWGDSPDNSL 380 (400)
T ss_dssp SEEEC---CTTTCCCEEECCTTSTTCCCGG--------------GCCEEEEEECSSEEEEEETT-CCEEEEECCTTSTT
T ss_pred cceEE--EecCceeEEeccCCCCceecCCC--------------cchHHhHhccCCeEEEEece-eeEEEecCCCCcce
Confidence 99998 88899999999999999863221 12578999999999998887 89999998766555
No 26
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=89.86 E-value=0.81 Score=49.03 Aligned_cols=63 Identities=22% Similarity=0.407 Sum_probs=51.7
Q ss_pred CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEE
Q psy16692 4 LWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVF 83 (1149)
Q Consensus 4 ~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy 83 (1149)
..|.+++-.+|+++++|+|++||+-.... . .+..++++|. ++++-+..-..|-
T Consensus 318 y~H~vvi~gd~el~sFG~~sNGQ~~ip~t--------------a-gPfla~~AG~------------~fTVTVn~~nyv~ 370 (400)
T 4gbf_A 318 YTHYTVMYGDGQIAFFGNNDNGQCDVDDH--------------A-GPYIQLAAGH------------NFTVTVNTLNQVM 370 (400)
T ss_dssp SSEEEC-CTTTCCCEEECCTTSTTCCCGG--------------G-CCEEEEEECS------------SEEEEEETTCCEE
T ss_pred ccceEEEecCceeEEeccCCCCceecCCC--------------c-chHHhHhccC------------CeEEEEeceeeEE
Confidence 46888999999999999999999865442 1 2588999999 9999999999999
Q ss_pred EEECCCCCCC
Q psy16692 84 TWGGDTHGQL 93 (1149)
Q Consensus 84 ~WG~N~~GQL 93 (1149)
.||.....-|
T Consensus 371 FWGDSPDNSL 380 (400)
T 4gbf_A 371 FWGDSPDNSL 380 (400)
T ss_dssp EEECCTTSTT
T ss_pred EecCCCCcce
Confidence 9999654444
No 27
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.37 E-value=23 Score=43.70 Aligned_cols=147 Identities=9% Similarity=0.001 Sum_probs=70.7
Q ss_pred cEEEEEee-CCcEEEEECCCCCCCCCCCCCC--cccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCCCCCC
Q psy16692 71 WHSLALND-CGEVFTWGGDTHGQLGLESADK--KSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGS 147 (1149)
Q Consensus 71 ~HslaLt~-~G~Vy~WG~N~~GQLG~g~~~~--~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~qlG~ 147 (1149)
.|+++... +|++|.+|-.....--..+... ......+.+..+. ..-..|+++...+|.+|..|.....+.
T Consensus 442 ~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p-------~~R~~h~~~~~~~~~iyv~GG~~~~~~ 514 (695)
T 2zwa_A 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLS-------HTRFRHSACSLPDGNVLILGGVTEGPA 514 (695)
T ss_dssp SCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCS-------BCCBSCEEEECTTSCEEEECCBCSSCS
T ss_pred ceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCC-------CCcccceEEEEcCCEEEEECCCCCCCC
Confidence 78888776 8999999863321100111000 0011122222221 133567777756899999987652221
Q ss_pred -----CCCCCeEEEEe-------cCCeeEEEEeCCC-CcEEEEecCCCCCcccCCCCCcccccEEecccCCCC------E
Q psy16692 148 -----DPSQGVQSNLV-------QDSHTTITSLNSP-GELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLP------I 208 (1149)
Q Consensus 148 -----~~~~~V~~Is~-------G~~hs~a~~Lt~~-G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~------V 208 (1149)
........+.. -..|+++ ++..+ |++|.+|-.... |. ..... ..+-.+.... +
T Consensus 515 v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~-v~~~~~~~iyv~GG~~~~--~~-~~~~~----v~~yd~~~~~w~~~~~W 586 (695)
T 2zwa_A 515 MLLYNVTEEIFKDVTPKDEFFQNSLVSAGL-EFDPVSKQGIILGGGFMD--QT-TVSDK----AIIFKYDAENATEPITV 586 (695)
T ss_dssp EEEEETTTTEEEECCCSSGGGGSCCBSCEE-EEETTTTEEEEECCBCTT--SS-CBCCE----EEEEEECTTCSSCCEEE
T ss_pred EEEEECCCCceEEccCCCCCCCcccceeEE-EEeCCCCEEEEECCcCCC--CC-eeeCc----EEEEEccCCccccceEE
Confidence 02223333332 1235533 24444 899999832111 10 00010 1111111112 3
Q ss_pred EEEEe-----cCCeEEEEEecCCcEEEEec
Q psy16692 209 ALIAC-----GANHSFVLSKSVSRLYAFGI 233 (1149)
Q Consensus 209 ~~Ia~-----G~~hs~alt~~~G~Vy~wG~ 233 (1149)
..+.. -..|++++..+ |++|.+|-
T Consensus 587 ~~~~~~p~~~R~~~~~~~~~~-~~iyv~GG 615 (695)
T 2zwa_A 587 IKKLQHPLFQRYGSQIKYITP-RKLLIVGG 615 (695)
T ss_dssp EEEEECGGGCCBSCEEEEEET-TEEEEECC
T ss_pred EEcCCCCCCCcccceEEEeCC-CEEEEECC
Confidence 44433 24688888775 79999984
No 28
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.79 E-value=17 Score=44.87 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=15.4
Q ss_pred CceEEEEee-CCcEEEEeCCC
Q psy16692 4 LWHSLALND-CGEVFTWGGDT 23 (1149)
Q Consensus 4 ~~HslaLt~-dG~VysWG~N~ 23 (1149)
..|++++.. +|++|.+|...
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~ 461 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRK 461 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBS
T ss_pred cceEEEEEccCCEEEEEcCCC
Confidence 358887776 89999999643
No 29
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=76.28 E-value=1e+02 Score=34.35 Aligned_cols=215 Identities=10% Similarity=-0.041 Sum_probs=110.2
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
...+.++.|+.|++|..-...--..+.... -.+....++.-.+.+|+.+.+...+ ......+.+|.+|.+
T Consensus 52 t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~---G~~i~~~l~l~~~e~i~~~~~~~~~-------~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 52 THDLILFFTTQGRVYRAKAYDLPEASRTAR---GQHVANLLAFQPEERIAQVIQIRGY-------TDAPYLVLATRNGLV 121 (327)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCSSSC---CEEHHHHTTCCTTCCEEEEEEESST-------TSSSEEEEEETTSEE
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCccCC---CEEHHHccCCCCCCEEEEEEEeccC-------CCCCEEEEEcCCCEE
Confidence 345677899999999987544333222111 1111122333357788887665410 012577889999988
Q ss_pred EEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEE--EEeCCCeeEEEecCceEEEecCC--C--CCCC---------
Q psy16692 83 FTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ--ACAGYSHCLVLTSSGVVTCTHKE--N--GCGS--------- 147 (1149)
Q Consensus 83 y~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~--Ia~G~~hs~aLT~~G~Vy~wG~n--~--qlG~--------- 147 (1149)
.-.-...+-.... .....+..-.+..++. ++.+.++.+++|++|.++.+-.. . ..|.
T Consensus 122 Kr~~l~~~~~~~r--------~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 122 KKSKLTDFDSNRS--------GGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 193 (327)
T ss_dssp EEEEGGGGCCCCS--------SCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred EEeEHHHhhcccc--------CceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence 8776443321100 0011111112333433 34467778889999999987666 4 2222
Q ss_pred -CCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEE--EecCCeEEEEEec
Q psy16692 148 -DPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALI--ACGANHSFVLSKS 224 (1149)
Q Consensus 148 -~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~I--a~G~~hs~alt~~ 224 (1149)
..++.|+.+..-.....++.+|++|.+.-.-...+-..+.+...... .++..- +..++.+ ..+.++.++++++
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~---~~l~~~-~d~lv~~~~~~~~~~i~l~T~~ 269 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT---VMYDRR-RGRLVGALIVDDDSELYAVTSG 269 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES---SCCCTT-TCSEEEEEEECTTCEEEEEEGG
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE---EEecCC-CCeEEEEEEeCCCccEEEEcCC
Confidence 15566777666543322223788887665533332211111111100 011110 1233333 3355677778877
Q ss_pred CCcEEEEecCCCCCCC
Q psy16692 225 VSRLYAFGIGSAVQLD 240 (1149)
Q Consensus 225 ~G~Vy~wG~N~~GQLG 240 (1149)
|++.-+-..+--..|
T Consensus 270 -G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 270 -GGVIRTAARQVRKAG 284 (327)
T ss_dssp -GCEEEEEGGGSCBCC
T ss_pred -CeEEEEehhhccccC
Confidence 888887654443333
No 30
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=67.13 E-value=1.5e+02 Score=32.53 Aligned_cols=207 Identities=11% Similarity=0.042 Sum_probs=108.0
Q ss_pred eEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEE--EeCCCcccccccccCccEEEEEeeCCcEE
Q psy16692 6 HSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQA--CAGYSHCLVLTSTTGLWHSLALNDCGEVF 83 (1149)
Q Consensus 6 HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqV--acG~~hs~~Lt~S~G~~HslaLt~~G~Vy 83 (1149)
..+.+|.+|-+-.--...+.....+... ...+..-.+..++.+ +.+. .+.+++|+.|++|
T Consensus 10 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g------~~~~~lke~D~l~~~~~~~~~------------~~ll~~T~~G~~~ 71 (312)
T 1suu_A 10 IVVMLTKKGFLKRLSQNEYKLQGTGGKG------LSSFDLNDGDEIVIALCVNTH------------DYLFMISNEGKLY 71 (312)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCC------EECCCCCTTCCEEEEEEEETT------------CEEEEEETTSEEE
T ss_pred EEEEEeCCCEEEEeEHHHhhccccCCCC------ceecccCCCCEEEEEEEECCC------------CEEEEEECCCeEE
Confidence 4567899998876654444322221100 011111133344443 3344 7899999999999
Q ss_pred EEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeC-----CCeeEEEecCceEEEecCCC---C--CC-----CC
Q psy16692 84 TWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAG-----YSHCLVLTSSGVVTCTHKEN---G--CG-----SD 148 (1149)
Q Consensus 84 ~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G-----~~hs~aLT~~G~Vy~wG~n~---q--lG-----~~ 148 (1149)
..-....-..|... .-.+....++.-.+..|+.+... ..+-+++|++|.++-.--.. + .| ..
T Consensus 72 ~~~~~~ip~~~r~~---~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 72 LINAYEIKDSSRAS---KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp EEEGGGSCC----------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred EEEHHHCCCCCccC---CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 98654322222111 00111122333356677777664 34578888999998764332 1 11 12
Q ss_pred CCCCeEEEEec--CCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEe--cCCeEEEEEec
Q psy16692 149 PSQGVQSNLVQ--DSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIAC--GANHSFVLSKS 224 (1149)
Q Consensus 149 ~~~~V~~Is~G--~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~--G~~hs~alt~~ 224 (1149)
.+..++.+... ..+.++ +|++|.+.-+-....-..|.+...... +.-..+..|+.+.. ...+.+++++.
T Consensus 149 ~~d~lv~~~~~~~~~~i~l--~T~~G~~~r~~~~ev~~~gR~~~Gv~~-----i~L~~~d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 149 DKDFVTSAEIVFKDEKVIC--LSKKGSAFIFNSRDVRLTNRGTQGVCG-----MKLKEGDLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp TTCCEEEEEEECTTCEEEE--EETTSEEEEEEGGGSCBCCTTBCCEEC-----CCCCTTCCEEEEEECTTCSEEEEEETT
T ss_pred CCCEEEEEEEeCCCCEEEE--EeCCCcEEEEEHHHccccCCCCCCeEe-----EEeCCCCEEEEEEEECCCCeEEEEECC
Confidence 45566666554 344555 999999999987665444432221111 11112445555543 34455556665
Q ss_pred CCcEEEEecCCCCCCCC
Q psy16692 225 VSRLYAFGIGSAVQLDS 241 (1149)
Q Consensus 225 ~G~Vy~wG~N~~GQLG~ 241 (1149)
|.....-..++-..+.
T Consensus 222 -G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 222 -GYGKRLNMSKISELKR 237 (312)
T ss_dssp -SEEEEEEGGGSCBCCT
T ss_pred -CceEEEEHHHhcccCC
Confidence 7776666655544333
No 31
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=66.05 E-value=1.7e+02 Score=32.68 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=62.0
Q ss_pred CcEEEEEeCCCeeEEEecCceEEEecCCC-CCC---CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCC
Q psy16692 115 VSVVQACAGYSHCLVLTSSGVVTCTHKEN-GCG---SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNS 190 (1149)
Q Consensus 115 ~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-qlG---~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~ 190 (1149)
..|..++....+.+.-+.+|.+..|-... +.- .+....+..++......+. -..+|.|..|-.... +.
T Consensus 280 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~~~dg~i~vwd~~~~-~~----- 351 (445)
T 2ovr_B 280 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS--GNADSTVKIWDIKTG-QC----- 351 (445)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEE--EETTSCEEEEETTTC-CE-----
T ss_pred CceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEE--EeCCCeEEEEECCCC-cE-----
Confidence 45777777666666666889999997654 110 1133455666666665555 677889999865331 10
Q ss_pred CCcccccEEecc--cCCCCEEEEEecCCeEEEEEecCCcEEEEecC
Q psy16692 191 NTTVTKPQRVES--LVNLPIALIACGANHSFVLSKSVSRLYAFGIG 234 (1149)
Q Consensus 191 ~~~~~~P~~V~~--l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N 234 (1149)
...+.. .....|..++..+..-++-..+ |.|..|-..
T Consensus 352 ------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-g~v~iwd~~ 390 (445)
T 2ovr_B 352 ------LQTLQGPNKHQSAVTCLQFNKNFVITSSDD-GTVKLWDLK 390 (445)
T ss_dssp ------EEEECSTTSCSSCEEEEEECSSEEEEEETT-SEEEEEETT
T ss_pred ------EEEEccCCCCCCCEEEEEECCCEEEEEeCC-CeEEEEECC
Confidence 111111 1223577777765554444445 999999764
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=65.72 E-value=1.3e+02 Score=31.14 Aligned_cols=133 Identities=11% Similarity=-0.018 Sum_probs=70.9
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEe---CCCeeEEEecCceEEEecCCC---C
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA---GYSHCLVLTSSGVVTCTHKEN---G 144 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~---G~~hs~aLT~~G~Vy~wG~n~---q 144 (1149)
...+.-+.+|.|..|- .+ .+..........|..++. .....++-+.+|.+..|-... .
T Consensus 115 ~~l~~~~~d~~i~~~d---~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 178 (313)
T 3odt_A 115 GVVISGSWDKTAKVWK---EG-------------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT 178 (313)
T ss_dssp TEEEEEETTSEEEEEE---TT-------------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEE
T ss_pred CEEEEEeCCCCEEEEc---CC-------------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEE
Confidence 5666667788888884 11 011111112334555544 445555556789999997443 1
Q ss_pred CCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEec
Q psy16692 145 CGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKS 224 (1149)
Q Consensus 145 lG~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~ 224 (1149)
........+..++...... ++.-..+|.|+.|-......+ ..+.. ....|..++...+..++....
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~------------~~~~~-~~~~i~~~~~~~~~~l~~~~~ 244 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL------------RTYEG-HESFVYCIKLLPNGDIVSCGE 244 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE------------EEEEC-CSSCEEEEEECTTSCEEEEET
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh------------hhhhc-CCceEEEEEEecCCCEEEEec
Confidence 1111344566665544433 323677889999865431110 11111 223577776655434554444
Q ss_pred CCcEEEEec
Q psy16692 225 VSRLYAFGI 233 (1149)
Q Consensus 225 ~G~Vy~wG~ 233 (1149)
+|.|+.|-.
T Consensus 245 dg~v~iwd~ 253 (313)
T 3odt_A 245 DRTVRIWSK 253 (313)
T ss_dssp TSEEEEECT
T ss_pred CCEEEEEEC
Confidence 589999965
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=64.89 E-value=1.4e+02 Score=31.22 Aligned_cols=193 Identities=8% Similarity=0.014 Sum_probs=92.4
Q ss_pred CceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEE
Q psy16692 4 LWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVF 83 (1149)
Q Consensus 4 ~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy 83 (1149)
.-.+++++.+|+.+..+....+.+..... ....+..... ....|..++... ...+.+.-. +|.|.
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-h~~~v~~~~~~~----------~~~~l~~~~-dg~i~ 75 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIP---RHARQINTLN-HGEVVCAVTISN----------PTRHVYTGG-KGCVK 75 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCC---SEEEEEEEEC-CSSCCCEEEECS----------SSSEEEEEC-BSEEE
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccC---Cccccceecc-CCCceEEEEEec----------CCcEEEEcC-CCeEE
Confidence 34678999999999988755543332221 1111111111 122344444333 113333333 88899
Q ss_pred EEECCCCCCCCCCCCCCcccccceEecc-CCCCcEEEEEeCCCee--EEEecCceEEEecCCCCCC------CCCCCCeE
Q psy16692 84 TWGGDTHGQLGLESADKKSQSIPKRVKG-LASVSVVQACAGYSHC--LVLTSSGVVTCTHKENGCG------SDPSQGVQ 154 (1149)
Q Consensus 84 ~WG~N~~GQLG~g~~~~~~~~~P~~V~~-l~~~~I~~Ia~G~~hs--~aLT~~G~Vy~wG~n~qlG------~~~~~~V~ 154 (1149)
.|-....+... . ...+.. -....|..++...+.. ++-+.+|.++.|-...... ......+.
T Consensus 76 iw~~~~~~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 76 VWDISHPGNKS---------P-VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145 (337)
T ss_dssp EEETTSTTCCS---------C-SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred EEECCCCCcee---------e-eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE
Confidence 88665422110 0 011111 1233566666654433 3334679999986554110 01334455
Q ss_pred EEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCC-eEEEEEecCCcEEEEec
Q psy16692 155 SNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGAN-HSFVLSKSVSRLYAFGI 233 (1149)
Q Consensus 155 ~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~-hs~alt~~~G~Vy~wG~ 233 (1149)
.++...+...++.-+.+|.|+.|-..... ....+.. ....|..++...+ ..++....+|.|+.|-.
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~ 212 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQT------------LVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTE------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEEC
Confidence 55554433333235567778887543210 0111111 1235666655432 34444444488988875
Q ss_pred C
Q psy16692 234 G 234 (1149)
Q Consensus 234 N 234 (1149)
.
T Consensus 213 ~ 213 (337)
T 1gxr_A 213 R 213 (337)
T ss_dssp T
T ss_pred C
Confidence 3
No 34
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=62.84 E-value=1.1e+02 Score=37.19 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=36.3
Q ss_pred CeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEE----ecCCeEEEEEecCCcEEEEecCCC
Q psy16692 161 SHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIA----CGANHSFVLSKSVSRLYAFGIGSA 236 (1149)
Q Consensus 161 ~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia----~G~~hs~alt~~~G~Vy~wG~N~~ 236 (1149)
.|+++ +..+|+||++|-...++. .+.. .....+.... +....+..+. .-..|+.++...+|+||..|-+.+
T Consensus 458 ~~~~~--~l~~g~i~v~GG~~~~~~-~~~~-~~~~~v~~yd-p~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~ 532 (656)
T 1k3i_A 458 FHTSV--VLPDGSTFITGGQRRGIP-FEDS-TPVFTPEIYV-PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 532 (656)
T ss_dssp SCEEE--ECTTSCEEEECCBSBCCT-TCCC-SBCCCCEEEE-GGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred cCCeE--ECCCCCEEEECCcccCcC-cCCC-CcccceEEEc-CCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCC
Confidence 35555 556899999985443321 1111 1111111111 1112233222 224687765533399999998766
Q ss_pred CC
Q psy16692 237 VQ 238 (1149)
Q Consensus 237 GQ 238 (1149)
|.
T Consensus 533 ~~ 534 (656)
T 1k3i_A 533 GD 534 (656)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 35
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=61.86 E-value=2e+02 Score=32.06 Aligned_cols=136 Identities=9% Similarity=0.041 Sum_probs=75.7
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC-CCC---
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN-GCG--- 146 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-qlG--- 146 (1149)
...+.-+.+|.|..|-...... ..+.....-....|..++......+.-+.+|.+..|-... +.-
T Consensus 224 ~~l~s~s~dg~i~vwd~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 292 (435)
T 1p22_A 224 GMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 292 (435)
T ss_dssp TEEEEEETTSCEEEEECSSSSC-----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEeeCCCcEEEEeCCCCCC-----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEE
Confidence 4555556677777774432110 1111111122346777777666666677889999997654 110
Q ss_pred CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCC
Q psy16692 147 SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVS 226 (1149)
Q Consensus 147 ~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G 226 (1149)
.+....|..++......+. -..+|.|..|-... |+. ...+.. ....|..++..+.. ++....+|
T Consensus 293 ~~~~~~v~~~~~~~~~l~~--g~~dg~i~iwd~~~-~~~-----------~~~~~~-h~~~v~~~~~~~~~-l~sg~~dg 356 (435)
T 1p22_A 293 NGHKRGIACLQYRDRLVVS--GSSDNTIRLWDIEC-GAC-----------LRVLEG-HEELVRCIRFDNKR-IVSGAYDG 356 (435)
T ss_dssp ECCSSCEEEEEEETTEEEE--EETTSCEEEEETTT-CCE-----------EEEECC-CSSCEEEEECCSSE-EEEEETTS
T ss_pred cCCCCcEEEEEeCCCEEEE--EeCCCeEEEEECCC-CCE-----------EEEEeC-CcCcEEEEEecCCE-EEEEeCCC
Confidence 1134556667666655555 67889999986543 111 011111 22357777774444 44444449
Q ss_pred cEEEEec
Q psy16692 227 RLYAFGI 233 (1149)
Q Consensus 227 ~Vy~wG~ 233 (1149)
.|..|-.
T Consensus 357 ~i~vwd~ 363 (435)
T 1p22_A 357 KIKVWDL 363 (435)
T ss_dssp CEEEEEH
T ss_pred cEEEEEC
Confidence 9999975
No 36
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=61.77 E-value=2e+02 Score=32.05 Aligned_cols=143 Identities=10% Similarity=0.049 Sum_probs=85.0
Q ss_pred cEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEE
Q psy16692 50 SVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLV 129 (1149)
Q Consensus 50 ~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~a 129 (1149)
.|..++..+ ...+.-+.+|.|..|-..+ |++ ...+.. ....|..++......+.
T Consensus 175 ~v~~l~~~~------------~~l~sg~~dg~i~vwd~~~-~~~------------~~~~~~-h~~~v~~l~~~~~~l~s 228 (435)
T 1p22_A 175 SVLCLQYDE------------RVIITGSSDSTVRVWDVNT-GEM------------LNTLIH-HCEAVLHLRFNNGMMVT 228 (435)
T ss_dssp CEEEEECCS------------SEEEEEETTSCEEEEESSS-CCE------------EEEECC-CCSCEEEEECCTTEEEE
T ss_pred cEEEEEECC------------CEEEEEcCCCeEEEEECCC-CcE------------EEEEcC-CCCcEEEEEEcCCEEEE
Confidence 466676644 5666667889999996543 110 111111 23457777777776666
Q ss_pred EecCceEEEecCCC-CCC------CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecc
Q psy16692 130 LTSSGVVTCTHKEN-GCG------SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVES 202 (1149)
Q Consensus 130 LT~~G~Vy~wG~n~-qlG------~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~ 202 (1149)
-+.+|.|..|-... +.- .+....|..++......+. -+.+|.|..|-.... +. ...+..
T Consensus 229 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s--~~~dg~i~vwd~~~~-~~-----------~~~~~~ 294 (435)
T 1p22_A 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS--ASGDRTIKVWNTSTC-EF-----------VRTLNG 294 (435)
T ss_dssp EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE--EETTSEEEEEETTTC-CE-----------EEEEEC
T ss_pred eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEE--EeCCCeEEEEECCcC-cE-----------EEEEcC
Confidence 67889999996654 111 1244567777776665555 678899999965431 10 111111
Q ss_pred cCCCCEEEEEecCCeEEEEEecCCcEEEEecC
Q psy16692 203 LVNLPIALIACGANHSFVLSKSVSRLYAFGIG 234 (1149)
Q Consensus 203 l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N 234 (1149)
....|..++..+...++-..+ |.|..|-..
T Consensus 295 -~~~~v~~~~~~~~~l~~g~~d-g~i~iwd~~ 324 (435)
T 1p22_A 295 -HKRGIACLQYRDRLVVSGSSD-NTIRLWDIE 324 (435)
T ss_dssp -CSSCEEEEEEETTEEEEEETT-SCEEEEETT
T ss_pred -CCCcEEEEEeCCCEEEEEeCC-CeEEEEECC
Confidence 123566776665555545555 899999764
No 37
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.16 E-value=2.1e+02 Score=31.59 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=78.2
Q ss_pred ceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEE
Q psy16692 5 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFT 84 (1149)
Q Consensus 5 ~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~ 84 (1149)
.+.++...+|.|+.|-.... + ....+.......|..++... ...+.++-+.+|.|..
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~-~------------~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSG-S------------VSALAETDESTYVASVKWSH----------DGSFLSVGLGNGLVDI 160 (401)
T ss_dssp TSEEEEEETTEEEEEETTTC-C------------EEEEEECCTTCCEEEEEECT----------TSSEEEEEETTSCEEE
T ss_pred CCEEEEECCCeEEEeeCCCC-c------------EeEeeecCCCCCEEEEEECC----------CCCEEEEECCCCeEEE
Confidence 45677888999999975331 1 11112211233466665543 1145555567899999
Q ss_pred EECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC-CC----CCCCCCCeEEEEec
Q psy16692 85 WGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN-GC----GSDPSQGVQSNLVQ 159 (1149)
Q Consensus 85 WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-ql----G~~~~~~V~~Is~G 159 (1149)
|-..... ....+. .....|..++......+.-+.+|.|..|--.. .. -......|..++..
T Consensus 161 wd~~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 161 YDVESQT-------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EETTTCC-------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EECcCCe-------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 9653311 111122 12346777777666555566889999997653 10 01134456666665
Q ss_pred CCeeEEEEeCCCCcEEEEecCC
Q psy16692 160 DSHTTITSLNSPGELYTWGNNE 181 (1149)
Q Consensus 160 ~~hs~a~~Lt~~G~VyswG~n~ 181 (1149)
.+...++.-+.+|.|..|-...
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~ 248 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARS 248 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCEEEEEeCCCeEEEccCCC
Confidence 4433333356778888886543
No 38
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=59.63 E-value=2.2e+02 Score=31.76 Aligned_cols=135 Identities=7% Similarity=0.003 Sum_probs=76.9
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC-CCC---
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN-GCG--- 146 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-qlG--- 146 (1149)
...+.-..+|.|..|-..+. + ....+.. ....|..++......+.-+.+|.+..|-... +.-
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~-~------------~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETG-E------------CIHTLYG-HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp TEEEEEETTSCEEEEETTTT-E------------EEEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCcC-c------------EEEEECC-CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 56666677899999954321 1 0111111 2335777777677766667889999997654 110
Q ss_pred CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCC
Q psy16692 147 SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVS 226 (1149)
Q Consensus 147 ~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G 226 (1149)
.+....|..++..+...+. -+.+|.|..|-...... ...+. .....|..+...+.+.++-..+ |
T Consensus 236 ~~~~~~v~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~------------~~~~~-~~~~~v~~~~~~~~~l~~~~~d-~ 299 (445)
T 2ovr_B 236 MGHVAAVRCVQYDGRRVVS--GAYDFMVKVWDPETETC------------LHTLQ-GHTNRVYSLQFDGIHVVSGSLD-T 299 (445)
T ss_dssp ECCSSCEEEEEECSSCEEE--EETTSCEEEEEGGGTEE------------EEEEC-CCSSCEEEEEECSSEEEEEETT-S
T ss_pred cCCcccEEEEEECCCEEEE--EcCCCEEEEEECCCCcE------------eEEec-CCCCceEEEEECCCEEEEEeCC-C
Confidence 1234556666665555444 67788888886432100 01111 1123577777755454444444 8
Q ss_pred cEEEEecCC
Q psy16692 227 RLYAFGIGS 235 (1149)
Q Consensus 227 ~Vy~wG~N~ 235 (1149)
.|..|-...
T Consensus 300 ~i~i~d~~~ 308 (445)
T 2ovr_B 300 SIRVWDVET 308 (445)
T ss_dssp CEEEEETTT
T ss_pred eEEEEECCC
Confidence 999987643
No 39
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=56.83 E-value=1.6e+02 Score=35.50 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=31.9
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecC
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHK 141 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~ 141 (1149)
.+++++..+|+||.+|-...+.+-.= +.....-..+..+.. .-..|+++...+|++|..|.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~y---d~~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLY---DSSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEE---EGGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCCceEEe---cCcCCceeECCCCCc-------cccccceEEecCCeEEEEeC
Confidence 44567778899999996432211000 000111122222211 22457777666888888877
No 40
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=53.03 E-value=2.3e+02 Score=29.93 Aligned_cols=186 Identities=8% Similarity=-0.027 Sum_probs=0.0
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEe---CCCcccccccccCccEEEEEeeC
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA---GYSHCLVLTSTTGLWHSLALNDC 79 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVac---G~~hs~~Lt~S~G~~HslaLt~~ 79 (1149)
+....+.-..+|.|..| +.........+....+ .|..++. .+ ...+.-+.+
T Consensus 84 ~~~~l~~~~~dg~i~v~-------------d~~~~~~~~~~~~~~~-~i~~~~~~~~~~------------~~l~s~~~d 137 (366)
T 3k26_A 84 SHPLLAVAGSRGIIRII-------------NPITMQCIKHYVGHGN-AINELKFHPRDP------------NLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEETTCEEEEE-------------CTTTCCEEEEEESCCS-CEEEEEECSSCT------------TEEEEEETT
T ss_pred CCCEEEEecCCCEEEEE-------------EchhceEeeeecCCCC-cEEEEEECCCCC------------CEEEEEeCC
Q ss_pred CcEEEEECCCCCCCCCCCCCCcccccceEec---cCCCCcEEEEEeCCCeeEEEe--cCceEEEecCCC----CCCCC--
Q psy16692 80 GEVFTWGGDTHGQLGLESADKKSQSIPKRVK---GLASVSVVQACAGYSHCLVLT--SSGVVTCTHKEN----GCGSD-- 148 (1149)
Q Consensus 80 G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~---~l~~~~I~~Ia~G~~hs~aLT--~~G~Vy~wG~n~----qlG~~-- 148 (1149)
|.|..| ......+...- .-....|..++...+...+++ .+|.+..|-... +.-..
T Consensus 138 g~i~iw--------------d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 203 (366)
T 3k26_A 138 HALRLW--------------NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY 203 (366)
T ss_dssp SCEEEE--------------ETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH
T ss_pred CeEEEE--------------EeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE
Q ss_pred --------------------------CCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecc
Q psy16692 149 --------------------------PSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVES 202 (1149)
Q Consensus 149 --------------------------~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~ 202 (1149)
....|..++......+. -+.+|.|..|-.....+.......... ....+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~ 280 (366)
T 3k26_A 204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILS--KSCENAIVCWKPGKMEDDIDKIKPSES-NVTILGR 280 (366)
T ss_dssp TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEE--ECSSSEEEEEEESSTTCCGGGCCTTCC-CEEEEEE
T ss_pred EecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEE--EecCCEEEEEeCCCccccccccccCCc-chheecc
Q ss_pred cCC--CCEEEEEecCC---eEEEEEecCCcEEEE
Q psy16692 203 LVN--LPIALIACGAN---HSFVLSKSVSRLYAF 231 (1149)
Q Consensus 203 l~~--~~V~~Ia~G~~---hs~alt~~~G~Vy~w 231 (1149)
+.+ ..|..++...+ ..++....+|.|+.|
T Consensus 281 ~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vw 314 (366)
T 3k26_A 281 FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVW 314 (366)
T ss_dssp EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEE
T ss_pred ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEE
No 41
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=49.69 E-value=2.8e+02 Score=29.93 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=51.7
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCC-eeEEEecCceEEEecCCC-C-CC-
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS-HCLVLTSSGVVTCTHKEN-G-CG- 146 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~-hs~aLT~~G~Vy~wG~n~-q-lG- 146 (1149)
...+.-..+|.|+.|-.... + ....+.. ....|..++...+ ..++.+.+|.++.|-... + ..
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~-~------------~~~~~~~-~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 325 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNG-N------------SQNCFYG-HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLAL 325 (425)
T ss_dssp TEEEEEETTSCEEEECSSSB-S------------CSEEECC-CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCC-c------------cceEecC-CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEe
Confidence 44555566888988854321 0 0111111 2235666665443 444445789999997654 1 10
Q ss_pred -CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecC
Q psy16692 147 -SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNN 180 (1149)
Q Consensus 147 -~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n 180 (1149)
......|..++...+...++.-+.+|.|..|-..
T Consensus 326 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 326 SIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EECTTCCEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred cccCCccEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 1134456666665444344336677888888653
No 42
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=48.55 E-value=3.2e+02 Score=30.29 Aligned_cols=152 Identities=9% Similarity=0.057 Sum_probs=83.4
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCC-----CeeEEEecCceEEEecCCC--
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGY-----SHCLVLTSSGVVTCTHKEN-- 143 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~-----~hs~aLT~~G~Vy~wG~n~-- 143 (1149)
.+.+++|..|++|..-...--..+... .-.+....++.-.+.+|+.+.+.. ...+.+|.+|.+.-.-...
T Consensus 54 d~ll~fT~~Gr~y~~~~~~lp~~~r~~---~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~ 130 (327)
T 3uc1_A 54 DLILFFTTQGRVYRAKAYDLPEASRTA---RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFD 130 (327)
T ss_dssp SEEEEEETTSEEEEEEGGGSCBCCSSS---CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGC
T ss_pred CEEEEEeCCCeEEEEEHHHCcCCCccC---CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhh
Confidence 778889999999988654333222111 111111223333567888887764 3567788999887653222
Q ss_pred ---CCC-----CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecC--CCCCcccCCCCCcccccEEecccCCCCEEEEEe
Q psy16692 144 ---GCG-----SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNN--EYGQMGINNSNTTVTKPQRVESLVNLPIALIAC 213 (1149)
Q Consensus 144 ---qlG-----~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n--~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~ 213 (1149)
.-| ......++.+.....|.-++++|++|++|.+-.. .--.+|.+..... .+.-..+..|+.+..
T Consensus 131 ~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~-----~i~L~~~d~Vv~~~~ 205 (327)
T 3uc1_A 131 SNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQ-----GMRFNIDDRLLSLNV 205 (327)
T ss_dssp CCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEE-----SSCCCTTCCEEEEEE
T ss_pred ccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCee-----eecCCCCCEEEEEEE
Confidence 112 1245566666555444444459999999999877 4433442221111 122223556777665
Q ss_pred cC--CeEEEEEecCCcEEEE
Q psy16692 214 GA--NHSFVLSKSVSRLYAF 231 (1149)
Q Consensus 214 G~--~hs~alt~~~G~Vy~w 231 (1149)
-. .+.+.+|+. |.+--.
T Consensus 206 ~~~~~~ll~~T~~-G~~Krt 224 (327)
T 3uc1_A 206 VREGTYLLVATSG-GYAKRT 224 (327)
T ss_dssp CCTTCEEEEEETT-SEEEEE
T ss_pred ECCCCEEEEEeCC-CcEEEE
Confidence 43 234445554 654433
No 43
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=46.82 E-value=2.8e+02 Score=29.16 Aligned_cols=188 Identities=12% Similarity=0.076 Sum_probs=90.8
Q ss_pred CcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCCCCC
Q psy16692 14 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQL 93 (1149)
Q Consensus 14 G~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~GQL 93 (1149)
|.+.+|+.+..+.+|....+......+..+..-....|..++..... .+....+.-+.+|.|..|-....++
T Consensus 5 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~g~~l~~~~~dg~i~iw~~~~~~~- 76 (368)
T 3mmy_A 5 GTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPT-------LPGNFLIAGSWANDVRCWEVQDSGQ- 76 (368)
T ss_dssp CCSSCCCBCCEECC----CCSSCTTCCEECSSCCSSCEEEEEECCTT-------SSSEEEEEEETTSEEEEEEECTTSC-
T ss_pred cceeeeccCCCcEEEEeccCCCCCcceeEeccCCCCceEEEEEcCCC-------CCceEEEEECCCCcEEEEEcCCCCc-
Confidence 33444555555555543332222222322222233467777766510 0013444556689999996543221
Q ss_pred CCCCCCCcccccceEeccCCCCcEEEEEeCCC--eeEEEecCceEEEecCCC-CC-C-CCCCCCeEEEEe--cCCeeEEE
Q psy16692 94 GLESADKKSQSIPKRVKGLASVSVVQACAGYS--HCLVLTSSGVVTCTHKEN-GC-G-SDPSQGVQSNLV--QDSHTTIT 166 (1149)
Q Consensus 94 G~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~--hs~aLT~~G~Vy~wG~n~-ql-G-~~~~~~V~~Is~--G~~hs~a~ 166 (1149)
.....+.. ....|..++...+ ..+.-+.+|.|..|.... +. . ......|..++. ..+...++
T Consensus 77 ----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 77 ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp ----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEE
T ss_pred ----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEE
Confidence 11122221 2335677766543 334445789999997655 10 0 113455666665 44433332
Q ss_pred EeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecCCcEEEEecCC
Q psy16692 167 SLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGS 235 (1149)
Q Consensus 167 ~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~G~Vy~wG~N~ 235 (1149)
.-..+|.|+.|-....-.+ ..+.. ...+..+..-....++.+.+ |.+..|-...
T Consensus 146 ~~~~dg~i~vwd~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 199 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPM------------MVLQL--PERCYCADVIYPMAVVATAE-RGLIVYQLEN 199 (368)
T ss_dssp EEETTSEEEEECSSCSSCS------------EEEEC--SSCEEEEEEETTEEEEEEGG-GCEEEEECSS
T ss_pred EccCCCcEEEEECCCCcEE------------EEEec--CCCceEEEecCCeeEEEeCC-CcEEEEEecc
Confidence 3566788888854321100 11111 12355555555555666666 8888887643
No 44
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=43.82 E-value=73 Score=36.49 Aligned_cols=178 Identities=9% Similarity=0.114 Sum_probs=90.9
Q ss_pred ceEEEEeeCCcEEEEeCCCCCCCCCCCCC------CcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEee
Q psy16692 5 WHSLALNDCGEVFTWGGDTHGQLGLESAD------KKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALND 78 (1149)
Q Consensus 5 ~HslaLt~dG~VysWG~N~~GQLG~g~~~------~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~ 78 (1149)
...+++++.+.++.-|.++.-.++....- ......|.....+.+ |.+|++ . ...+++..
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d------------~~~L~v~~ 104 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-H------------GDQVLVST 104 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-E------------TTEEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-C------------CCEEEEEc
Confidence 35678888888777776654333211100 000134533333454 889988 6 55666668
Q ss_pred CCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC-CCCCCCCCCeEEEE
Q psy16692 79 CGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN-GCGSDPSQGVQSNL 157 (1149)
Q Consensus 79 ~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-qlG~~~~~~V~~Is 157 (1149)
+|.|..|=-.+..+. ..+... ...+.++.+-....++++.+|.++.|--.. ++ .++.
T Consensus 105 ~~~l~v~dv~sl~~~-------------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~--------~~~~ 162 (388)
T 1xip_A 105 RNALYSLDLEELSEF-------------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALDLRTKST--------KQLA 162 (388)
T ss_dssp SSEEEEEESSSTTCE-------------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--------EEEE
T ss_pred CCcEEEEEchhhhcc-------------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEEccCCcc--------cccc
Confidence 899999965443221 011111 124566666666677778999999995543 11 1221
Q ss_pred ecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCC----CcccccEEecc--cCCCCEEEEEecCCeEEEEE
Q psy16692 158 VQDSHTTITSLNSPGELYTWGNNEYGQMGINNSN----TTVTKPQRVES--LVNLPIALIACGANHSFVLS 222 (1149)
Q Consensus 158 ~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~----~~~~~P~~V~~--l~~~~V~~Ia~G~~hs~alt 222 (1149)
. .-.+++ .+.+|.+.+.++|.--|+-..... .....|..+.+ ..+.+|..|.-=.++.++++
T Consensus 163 ~-~Vs~v~--WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 163 Q-NVTSFD--VTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp E-SEEEEE--ECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred C-CceEEE--EcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 1 112333 666666655555544444211111 01112222221 12355777766666666554
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=43.14 E-value=3.9e+02 Score=29.72 Aligned_cols=134 Identities=10% Similarity=0.089 Sum_probs=73.3
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCC--eeEEEecCceEEEecCCC----C
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS--HCLVLTSSGVVTCTHKEN----G 144 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~--hs~aLT~~G~Vy~wG~n~----q 144 (1149)
...+.-+.+|.|..|-..+... ...+.. ....|..++...+ ..+.-+.+|.|..|-... +
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKC-------------LYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 346 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEE-------------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE-------------EEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 6667777889999996532100 111111 2234666665543 334445789999997654 1
Q ss_pred CCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEec
Q psy16692 145 CGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKS 224 (1149)
Q Consensus 145 lG~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~ 224 (1149)
.-.+....|..++....+.+. -..||.|..|-.....+. ..........+..+...+. .++...+
T Consensus 347 ~~~~h~~~v~~~~~~~~~l~s--~s~dg~v~vwd~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~l~~~~d 411 (464)
T 3v7d_B 347 TLQGHTALVGLLRLSDKFLVS--AAADGSIRGWDANDYSRK------------FSYHHTNLSAITTFYVSDN-ILVSGSE 411 (464)
T ss_dssp EECCCSSCEEEEEECSSEEEE--EETTSEEEEEETTTCCEE------------EEEECTTCCCEEEEEECSS-EEEEEET
T ss_pred EEeCCCCcEEEEEEcCCEEEE--EeCCCcEEEEECCCCcee------------eeecCCCCccEEEEEeCCC-EEEEecC
Confidence 111244567777777666555 788999999976542111 1111111223444444443 3333445
Q ss_pred CCcEEEEecC
Q psy16692 225 VSRLYAFGIG 234 (1149)
Q Consensus 225 ~G~Vy~wG~N 234 (1149)
|.|..|-..
T Consensus 412 -g~i~iwd~~ 420 (464)
T 3v7d_B 412 -NQFNIYNLR 420 (464)
T ss_dssp -TEEEEEETT
T ss_pred -CeEEEEECC
Confidence 888888753
No 46
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=42.75 E-value=1e+02 Score=33.04 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=12.6
Q ss_pred CCeeEEEecCceEEEecCC
Q psy16692 124 YSHCLVLTSSGVVTCTHKE 142 (1149)
Q Consensus 124 ~~hs~aLT~~G~Vy~wG~n 142 (1149)
..|+++. .+|++|..|..
T Consensus 140 ~~~~~~~-~~~~iyv~GG~ 157 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGGK 157 (315)
T ss_dssp BSCEEEE-ETTEEEEECCB
T ss_pred cceeEEE-ECCEEEEEeCC
Confidence 4565555 57889998875
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.99 E-value=3.9e+02 Score=29.21 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=76.4
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCC--eeEEEecCceEEEecCCC-C---
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS--HCLVLTSSGVVTCTHKEN-G--- 144 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~--hs~aLT~~G~Vy~wG~n~-q--- 144 (1149)
.+.++...+|.|+.|-..+ |+ ............|..++-..+ +.++-+.+|.|..|-... +
T Consensus 104 ~~l~~~~~d~~v~lw~~~~-~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 170 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADS-GS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR 170 (401)
T ss_dssp TSEEEEEETTEEEEEETTT-CC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCEEEEECCCeEEEeeCCC-Cc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE
Confidence 5677888999999997643 11 111122213445677766433 333444789999997554 1
Q ss_pred CCCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCC-eEEEEEe
Q psy16692 145 CGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGAN-HSFVLSK 223 (1149)
Q Consensus 145 lG~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~-hs~alt~ 223 (1149)
.-.+....|..++......+. -..+|.|+.|-....++. ...... ....|..++.-.+ ..++...
T Consensus 171 ~~~~~~~~v~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 171 TMAGHQARVGCLSWNRHVLSS--GSRSGAIHHHDVRIANHQ-----------IGTLQG-HSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EECCCSSCEEEEEEETTEEEE--EETTSEEEEEETTSSSCE-----------EEEEEC-CSSCEEEEEECTTSSEEEEEE
T ss_pred EecCCCCceEEEEECCCEEEE--EcCCCCEEEEecccCcce-----------eeEEcC-CCCCeeEEEEcCCCCEEEEEe
Confidence 111245567777775554444 778899999976432211 111111 1234666655432 3344444
Q ss_pred cCCcEEEEecCC
Q psy16692 224 SVSRLYAFGIGS 235 (1149)
Q Consensus 224 ~~G~Vy~wG~N~ 235 (1149)
.+|.|..|-...
T Consensus 237 ~d~~v~iwd~~~ 248 (401)
T 4aez_A 237 NDNVVQIWDARS 248 (401)
T ss_dssp TTSCEEEEETTC
T ss_pred CCCeEEEccCCC
Confidence 448999997643
No 48
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=40.85 E-value=5.5e+02 Score=30.87 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=51.6
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEe----CCCeeEEEecCceEEEecCCC-CC
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA----GYSHCLVLTSSGVVTCTHKEN-GC 145 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~----G~~hs~aLT~~G~Vy~wG~n~-ql 145 (1149)
...+.-+.+|.|..|-...... ...+.......|..++. .....++-+.+|.|..|-... +.
T Consensus 154 ~~l~~~~~dg~v~vwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 154 STFASGCLDRTVKVWSLGQSTP-------------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp EEEEEEETTSEEEEEETTCSSC-------------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcc-------------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 4455566789999996532110 11111111123333433 233344445779999996544 10
Q ss_pred ---CCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCC
Q psy16692 146 ---GSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181 (1149)
Q Consensus 146 ---G~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~ 181 (1149)
-.+....|..++.......++.-+.+|.|..|-...
T Consensus 221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 011344566666665554443466788899986543
No 49
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=36.30 E-value=2.3e+02 Score=29.80 Aligned_cols=108 Identities=11% Similarity=0.079 Sum_probs=60.1
Q ss_pred CCCcEEEEEeCCC----eeEEE-ecCceEEEecCCC-CCC-----CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCC
Q psy16692 113 ASVSVVQACAGYS----HCLVL-TSSGVVTCTHKEN-GCG-----SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181 (1149)
Q Consensus 113 ~~~~I~~Ia~G~~----hs~aL-T~~G~Vy~wG~n~-qlG-----~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~ 181 (1149)
....|..++...+ ..++. +.+|.|..|-... ..- ......|..++...+...++.-+.+|.|..|-...
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 117 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS 117 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence 3456888888765 33333 3679999996543 110 01345566666654433333356778888886543
Q ss_pred CCCcccCCCCCcccccEEecccCCCCEEEEEe---cCCeEEEEEecCCcEEEEecC
Q psy16692 182 YGQMGINNSNTTVTKPQRVESLVNLPIALIAC---GANHSFVLSKSVSRLYAFGIG 234 (1149)
Q Consensus 182 ~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~---G~~hs~alt~~~G~Vy~wG~N 234 (1149)
. + +..... ....|..++. .....++....+|.|+.|-..
T Consensus 118 ~-~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 159 (368)
T 3mmy_A 118 N-Q------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159 (368)
T ss_dssp T-E------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS
T ss_pred C-C------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC
Confidence 1 1 111111 2235777764 334455555545899999753
No 50
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=35.51 E-value=3.8e+02 Score=27.42 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=70.8
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCC-eeEEEecCceEEEecCCC-CCC--
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS-HCLVLTSSGVVTCTHKEN-GCG-- 146 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~-hs~aLT~~G~Vy~wG~n~-qlG-- 146 (1149)
...+.-+.+|.|..|-.. .....+.......|..++.... ..++-+.+|.++.|-... +.-
T Consensus 156 ~~l~~~~~d~~i~i~d~~---------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 156 NKFLTASADKTIKLWQND---------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp TEEEEEETTSCEEEEETT---------------EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CEEEEEECCCCEEEEecC---------------ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhh
Confidence 566666778999999411 0111122223334555555332 234445789999997654 100
Q ss_pred -CCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecC
Q psy16692 147 -SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSV 225 (1149)
Q Consensus 147 -~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~ 225 (1149)
......|..++...+..++ ....+|.|+.|-.... .+...-......|..++.-.+..++....+
T Consensus 221 ~~~~~~~i~~~~~~~~~~l~-~~~~dg~v~iwd~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 221 YEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENG-------------SLKQVITLPAISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp EECCSSCEEEEEECTTSCEE-EEETTSEEEEECTTTC-------------CEEEEEECSSSCEEEEEECTTSCEEEEETT
T ss_pred hhcCCceEEEEEEecCCCEE-EEecCCEEEEEECCCC-------------ceeEEEeccCceEEEEEEccCCCEEEEeCC
Confidence 0134456666655443222 3567788888854321 111111112335777776554435545555
Q ss_pred CcEEEEecC
Q psy16692 226 SRLYAFGIG 234 (1149)
Q Consensus 226 G~Vy~wG~N 234 (1149)
|.|+.|-..
T Consensus 287 g~i~iw~~~ 295 (313)
T 3odt_A 287 NLVRIFSQE 295 (313)
T ss_dssp SCEEEEESC
T ss_pred CcEEEEeCC
Confidence 899999764
No 51
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.98 E-value=4.8e+02 Score=28.46 Aligned_cols=164 Identities=9% Similarity=-0.025 Sum_probs=88.5
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
+..+.+++|+.|++|..-...--..|.... -......++.-.+.+|+.+.+...+ ....+-+++|++|.+
T Consensus 57 ~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~---G~~i~~~l~l~~~e~i~~~~~~~~~-------~~~~~ll~~T~~G~~ 126 (312)
T 1suu_A 57 THDYLFMISNEGKLYLINAYEIKDSSRASK---GQNISELINLGDQEEILTIKNSKDL-------TDDAYLLLTTASGKI 126 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCC----------CBGGGTSCCCTTCCEEEEEEESCC-------CTTCEEEEEETTSEE
T ss_pred CCCEEEEEECCCeEEEEEHHHCCCCCccCC---CcChhhccCCCCCCEEEEEEEeccC-------CCCCEEEEEeCCCeE
Confidence 456788999999999987554322222111 1111222333356677776554300 012668889999999
Q ss_pred EEEECCCCCCC-CCCCCCCcccccceEeccCCCCcEEEEE--eCCCeeEEEecCceEEEecCCC--CCCC----------
Q psy16692 83 FTWGGDTHGQL-GLESADKKSQSIPKRVKGLASVSVVQAC--AGYSHCLVLTSSGVVTCTHKEN--GCGS---------- 147 (1149)
Q Consensus 83 y~WG~N~~GQL-G~g~~~~~~~~~P~~V~~l~~~~I~~Ia--~G~~hs~aLT~~G~Vy~wG~n~--qlG~---------- 147 (1149)
+..-...+-.. +.|. + .++.-.+..++.+. .+..+.+++|++|...-+-... ..|.
T Consensus 127 kr~~l~~~~~~r~~G~--------~-~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L 197 (312)
T 1suu_A 127 ARFESTDFKAVKSRGV--------I-VIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL 197 (312)
T ss_dssp EEEEGGGGCC----CE--------E-CBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC
T ss_pred EEEEHHHhhccCCCcE--------E-EEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe
Confidence 98876544111 1110 0 01111234455444 3566788889999887664433 2222
Q ss_pred CCCCCeEEEEec--CCeeEEEEeCCCCcEEEEecCCCCCccc
Q psy16692 148 DPSQGVQSNLVQ--DSHTTITSLNSPGELYTWGNNEYGQMGI 187 (1149)
Q Consensus 148 ~~~~~V~~Is~G--~~hs~a~~Lt~~G~VyswG~n~~GQLG~ 187 (1149)
..+..|+.+..- ..+.++ +|++|.....-...+-..+.
T Consensus 198 ~~~d~vv~~~~v~~~~~l~~--vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 198 KEGDLFVKVLSVKENPYLLI--VSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp CTTCCEEEEEECTTCSEEEE--EETTSEEEEEEGGGSCBCCT
T ss_pred CCCCEEEEEEEECCCCeEEE--EECCCceEEEEHHHhcccCC
Confidence 145566665442 233444 88888877776666544443
No 52
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=34.23 E-value=5.1e+02 Score=28.52 Aligned_cols=214 Identities=10% Similarity=0.009 Sum_probs=102.8
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
+..+.++.|+.|++|..-...--..|.... -.+....++.-.+.+|+.+.....+ ....+.+++|++|.+
T Consensus 49 t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~---G~~i~~~i~L~~~e~Iv~~~~~~~~-------~~~~~ll~~T~~G~i 118 (323)
T 1wp5_A 49 TKDVLLLFTNKGNYLYCPVHELPDIRWKDL---GQHIANIIPIDRDEEIIKAIPINDF-------ELNGYFLFVTRNGMV 118 (323)
T ss_dssp TTSEEEEEETTSEEEEEEGGGSCBCCTTSC---CEEGGGTSCCCTTCCEEEEEEESCT-------TSSCEEEEEETTSEE
T ss_pred CCCEEEEEECCCEEEEEEHHHCcCCCCCCC---CcChhhccCCCCCCEEEEEEEeccc-------CCCceEEEEeCCCeE
Confidence 567788999999999997655433332211 1111122332346667776443310 011467888999988
Q ss_pred EEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEE--EEeCCCeeEEEecCceEEEecCCC--CCCC----------C
Q psy16692 83 FTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ--ACAGYSHCLVLTSSGVVTCTHKEN--GCGS----------D 148 (1149)
Q Consensus 83 y~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~--Ia~G~~hs~aLT~~G~Vy~wG~n~--qlG~----------~ 148 (1149)
.-.-...+-....+ ..-..++.-.+..++. ++.+.++.+++|++|.++-+-.+. ..|. .
T Consensus 119 Krt~l~e~~~~~r~-------~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~ 191 (323)
T 1wp5_A 119 KKTELKHYKAQRYS-------KPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK 191 (323)
T ss_dssp EEEEGGGGCCSCCS-------SCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC
T ss_pred EEeEHHHhhhcccc-------CceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC
Confidence 87755433221100 0000111112233333 334677888899999988764433 1221 1
Q ss_pred CCCCeEEEEecC--C-eeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEE--EEecCCeEEEEEe
Q psy16692 149 PSQGVQSNLVQD--S-HTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIAL--IACGANHSFVLSK 223 (1149)
Q Consensus 149 ~~~~V~~Is~G~--~-hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~--Ia~G~~hs~alt~ 223 (1149)
.+..|+.+..-. . ..++ +|+.|...-.-...+-.-+.+..... .+...+. .+..+.. +..+.++.+++++
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~--vt~~G~gKr~~~~e~~~~~Rg~kGv~--~~~~~~~-~~~~l~~~~~v~~~~~i~~it~ 266 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVV--ATQRGAVKKMKLTEFEKATRAKRGVV--ILRELKA-NPHRISGFVVAQDSDTIYLQTE 266 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEE--EETTSEEEEEEGGGSCCCCTTSCCEE--CSCCCSS-SCCCEEEEEEECTTCEEEEEET
T ss_pred CCCEEEEEEEEcCCCcEEEE--EECCCceEEEEHHHccccCCCCCCEE--CeeecCC-CCceEEEEEEeCCCCeEEEEeC
Confidence 455566654322 1 2333 66666543333332211111111111 1111111 1223442 2345666677777
Q ss_pred cCCcEEEEecCCCCCC
Q psy16692 224 SVSRLYAFGIGSAVQL 239 (1149)
Q Consensus 224 ~~G~Vy~wG~N~~GQL 239 (1149)
+ |.+.-+-.++--..
T Consensus 267 ~-g~~ir~~~~~i~~~ 281 (323)
T 1wp5_A 267 K-SFIETIKVGDIRFS 281 (323)
T ss_dssp T-SCEEEEEGGGSCBC
T ss_pred C-CeEEEEEhhhcCcc
Confidence 6 88776665444333
No 53
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=33.22 E-value=4.2e+02 Score=27.31 Aligned_cols=95 Identities=13% Similarity=-0.059 Sum_probs=50.9
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCC--CeeEEEecCceEEEecCCC-CC--
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGY--SHCLVLTSSGVVTCTHKEN-GC-- 145 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~--~hs~aLT~~G~Vy~wG~n~-ql-- 145 (1149)
...+.-+.+|.|+.|-...... ..... ....+..++... ...++-+.+|.++.|-... ..
T Consensus 196 ~~l~~~~~dg~i~~~d~~~~~~-------------~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 196 TKLWTGGLDNTVRSWDLREGRQ-------------LQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp SEEEEEETTSEEEEEETTTTEE-------------EEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred CEEEEEecCCcEEEEECCCCce-------------Eeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 4555566789999996432110 01111 122455555533 2333344678888886654 11
Q ss_pred CCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecC
Q psy16692 146 GSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNN 180 (1149)
Q Consensus 146 G~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n 180 (1149)
-......|..++...+...++....+|.|..|-..
T Consensus 261 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EcCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 01234556777666544444336678888888654
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=28.54 E-value=1e+03 Score=30.46 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=51.8
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCC--CeeEEE--ecCceEEEecCCC-CC
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGY--SHCLVL--TSSGVVTCTHKEN-GC 145 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~--~hs~aL--T~~G~Vy~wG~n~-ql 145 (1149)
...+.-+.+|.|..|-..+ |++ ...+.. ....|..++... +..++. +.+|.|..|-... ++
T Consensus 670 ~~l~s~~~d~~v~vwd~~~-~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSAT-GKL------------VHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp SEEEEEETTSEEEEEETTT-CCE------------EEEEEC-CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CEEEEEeCCCeEEEEECCC-Cce------------EEEEcC-CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 4455556788999996543 111 111111 223466666543 333333 3678899996554 11
Q ss_pred ---CCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecC
Q psy16692 146 ---GSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNN 180 (1149)
Q Consensus 146 ---G~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n 180 (1149)
-.+....|..++...+...++..+.+|.|..|-..
T Consensus 736 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 736 RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGG
T ss_pred hheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCC
Confidence 11234456666665554444346778888888543
No 55
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=27.70 E-value=6.9e+02 Score=28.06 Aligned_cols=120 Identities=12% Similarity=-0.031 Sum_probs=64.5
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
+..+.++.|+.|++|..-...--..|.... -......++.-.+.+|+.+.+...+ ....+-+++|++|.+
T Consensus 56 t~d~ll~fT~~G~~~~~~~~eip~~~r~a~---G~~i~~ll~L~~~e~Iv~~~~~~~~-------~~~~~ll~~T~~G~v 125 (370)
T 3l6v_A 56 THDTLLTFTSSGKVFWLPVHQLPEAGSNAR---GRPIINWIPLESGERVQAVLPVREY-------ADNRYVFMATRNGTV 125 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTSC---CEEGGGSCCCCTTCCEEEEEEESCC-------CTTCEEEEEETTSEE
T ss_pred CCCEEEEEeCCCeEEEEEHHHCcCCCcccC---CcCHhhccCCCCCCEEEEEEEeccC-------CCCcEEEEEeCCCeE
Confidence 456778899999999987554333332211 1111122222356678887654200 011477889999988
Q ss_pred EEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEE--EEeCCCeeEEEecCceEEEec
Q psy16692 83 FTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ--ACAGYSHCLVLTSSGVVTCTH 140 (1149)
Q Consensus 83 y~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~--Ia~G~~hs~aLT~~G~Vy~wG 140 (1149)
.-.-...+-..+... -..++.-.+..++. ++.+.++.+++|++|.+.-+-
T Consensus 126 Krt~l~e~~~~~~~G--------~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 126 KKTPLSEFAFRLARG--------KIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFG 177 (370)
T ss_dssp EEEEGGGGCSCCTTC--------EESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEE
T ss_pred EEeEHHHhhcccCCc--------eEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEE
Confidence 877654442211000 00011111223332 335677888899999987653
No 56
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=27.64 E-value=6.2e+02 Score=27.45 Aligned_cols=144 Identities=11% Similarity=-0.009 Sum_probs=73.9
Q ss_pred eeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEEEECCCC
Q psy16692 11 NDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTH 90 (1149)
Q Consensus 11 t~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~WG~N~~ 90 (1149)
..+|.|+.|-.+..|++.... + .+.. ....|..++.... +....+.-..||.|..|-....
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~--------~-~~~~-h~~~V~~~~~~p~---------~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNV--------P-LVCG-HTAPVLDIAWCPH---------NDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTC--------C-CBCC-CSSCEEEEEECTT---------CTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCEEEEEECccCCCCCCCC--------c-eEec-CCCCEEEEEeCCC---------CCCEEEEEeCCCeEEEEEccCC
Confidence 457888888765554431100 0 0111 1224666655320 1145555567899999976553
Q ss_pred CCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCe---eEEEecCceEEEecCCC-----CCC-CCCCCCeEEEEecCC
Q psy16692 91 GQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSH---CLVLTSSGVVTCTHKEN-----GCG-SDPSQGVQSNLVQDS 161 (1149)
Q Consensus 91 GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~h---s~aLT~~G~Vy~wG~n~-----qlG-~~~~~~V~~Is~G~~ 161 (1149)
+...... .....+.. ....|..++..... .+.-+.+|.|..|.... .+. ......|..++...+
T Consensus 115 ~~~~~~~------~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 187 (402)
T 2aq5_A 115 GLVLPLR------EPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187 (402)
T ss_dssp CCSSCBC------SCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT
T ss_pred CCccccC------CceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC
Confidence 3221100 11112221 23467777766543 23334789999997654 221 123455666666544
Q ss_pred eeEEEEeCCCCcEEEEecC
Q psy16692 162 HTTITSLNSPGELYTWGNN 180 (1149)
Q Consensus 162 hs~a~~Lt~~G~VyswG~n 180 (1149)
...++.-..+|.|..|-..
T Consensus 188 ~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp SSCEEEEETTSEEEEEETT
T ss_pred CCEEEEEecCCcEEEEeCC
Confidence 3333235678888888643
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=27.04 E-value=5.9e+02 Score=27.04 Aligned_cols=150 Identities=8% Similarity=0.020 Sum_probs=72.9
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCC-----eeEEEecCceEEEecCCC-C
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS-----HCLVLTSSGVVTCTHKEN-G 144 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~-----hs~aLT~~G~Vy~wG~n~-q 144 (1149)
...+.-+.+|.|..|-.... + ....+. ....+..++.... ..++-+.+|.++.|.... +
T Consensus 113 ~~l~s~~~d~~i~iwd~~~~-~------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTNTL-Q------------TADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp TCEEEEETTSEEEEEETTTT-E------------EEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred cEEEEEeCCCeEEEeeCCCC-c------------cceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 45555667899999965421 1 001111 1123444444322 233344779999997654 1
Q ss_pred CC---CCCCCCeEEEEecCCee-EEEEeCCCCcEEEEecCCCCCc-ccCCC--CCcccccEEecccCCCCEEEEEecCCe
Q psy16692 145 CG---SDPSQGVQSNLVQDSHT-TITSLNSPGELYTWGNNEYGQM-GINNS--NTTVTKPQRVESLVNLPIALIACGANH 217 (1149)
Q Consensus 145 lG---~~~~~~V~~Is~G~~hs-~a~~Lt~~G~VyswG~n~~GQL-G~g~~--~~~~~~P~~V~~l~~~~V~~Ia~G~~h 217 (1149)
.- ......|..++...... +++.-..+|.|..|-....... -.-.. ......+..........|..++...+.
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 257 (408)
T 4a11_B 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG 257 (408)
T ss_dssp CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence 11 11345677777665543 2333667899999976543211 00000 000000000111122357777665443
Q ss_pred -EEEEEecCCcEEEEecCC
Q psy16692 218 -SFVLSKSVSRLYAFGIGS 235 (1149)
Q Consensus 218 -s~alt~~~G~Vy~wG~N~ 235 (1149)
.++....+|.|..|-...
T Consensus 258 ~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 258 LHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SEEEEEETTSCEEEEETTT
T ss_pred CEEEEecCCCeEEEEECCC
Confidence 344444448999998754
No 58
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=26.75 E-value=5.3e+02 Score=28.26 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=52.8
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccC-CCCcEEEEEeCCCee--EEEecCceEEEecCCC----
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL-ASVSVVQACAGYSHC--LVLTSSGVVTCTHKEN---- 143 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l-~~~~I~~Ia~G~~hs--~aLT~~G~Vy~wG~n~---- 143 (1149)
...+.-+.+|.|..|-.... + ....+... ....|..++...+.. +.-+.+|.|..|-...
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~-~------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTL-E------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp EEEEEEETTSEEEEEETTTC-C------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CEEEEEeCCCeEEEEeCCCC-e------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 55566677899999964331 1 11112211 223577777654433 3334789999997654
Q ss_pred -CCCCCCCCCeEEEEecC----CeeEEEEeCCCCcEEEEecCC
Q psy16692 144 -GCGSDPSQGVQSNLVQD----SHTTITSLNSPGELYTWGNNE 181 (1149)
Q Consensus 144 -qlG~~~~~~V~~Is~G~----~hs~a~~Lt~~G~VyswG~n~ 181 (1149)
.+.......|..++... +...++.-..+|.|..|-...
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 11112233556664332 232443467788899997643
No 59
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=26.46 E-value=5.7e+02 Score=26.65 Aligned_cols=151 Identities=10% Similarity=-0.033 Sum_probs=0.0
Q ss_pred CCCCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeC-
Q psy16692 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDC- 79 (1149)
Q Consensus 1 AcG~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~- 79 (1149)
+....+.+....+|.|..| +......-..+..-..+.-...+..+ .+.++...+
T Consensus 83 ~~~~~~l~s~~~dg~i~iw-------------d~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~~~ 137 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLW-------------DVSNGQCVATWKSPVPVKRVEFSPCG------------NYFLAILDNV 137 (369)
T ss_dssp CTTSSEEEEEETTTEEEEE-------------ETTTCCEEEEEECSSCEEEEEECTTS------------SEEEEEECCB
T ss_pred cCCCCEEEEEeCCCeEEEE-------------ECCCCcEEEEeecCCCeEEEEEccCC------------CEEEEecCCc
Q ss_pred ----CcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEe--cCceEEEecCCC-----CCCCC
Q psy16692 80 ----GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLT--SSGVVTCTHKEN-----GCGSD 148 (1149)
Q Consensus 80 ----G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT--~~G~Vy~wG~n~-----qlG~~ 148 (1149)
|.|+.|-.+.......-. ..................+..++...+...+++ .+|.|+.|-... ..-..
T Consensus 138 ~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 216 (369)
T 3zwl_B 138 MKNPGSINIYEIERDSATHELT-KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL 216 (369)
T ss_dssp TTBCCEEEEEEEEECTTTCCEE-EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC
T ss_pred cCCCCEEEEEEecCCccceeec-ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec
Q ss_pred CCCCeEEEEecCCeeEEEEeCCCCcEEEE
Q psy16692 149 PSQGVQSNLVQDSHTTITSLNSPGELYTW 177 (1149)
Q Consensus 149 ~~~~V~~Is~G~~hs~a~~Lt~~G~Vysw 177 (1149)
....|..++...+...++..+.+|.|+.|
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~ 245 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLV 245 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEE
No 60
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=26.20 E-value=6.3e+02 Score=27.03 Aligned_cols=198 Identities=12% Similarity=0.015 Sum_probs=103.9
Q ss_pred ceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcEEE
Q psy16692 5 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFT 84 (1149)
Q Consensus 5 ~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~Vy~ 84 (1149)
.+.++.|++|++|.--....-. +. .. -+ .-.+.+|+.+-+ ..+ ...+.+.+|.+|.+.-
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~---~~----~~----~l-l~~~e~i~~v~~-~~~--------~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQ---GS----KV----SL-KSREEKIVGAFI-REK--------FGNRLLLATKKGYVKK 94 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHT---SE----EC----CC-SSTTCCEEEEEE-GGG--------SCSEEEEEETTSEEEE
T ss_pred CEEEEEcCCCeEEEEEhhhCcc---Cc----cc----cc-CCCCCEEEEEEC-CcC--------CCCEEEEEeCCCEEEE
Confidence 4577889999999754222100 00 00 03 224667888766 310 1257888999999988
Q ss_pred EECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEe--CCCeeEEEecCceEEEecCCC--CCC----------CCCC
Q psy16692 85 WGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA--GYSHCLVLTSSGVVTCTHKEN--GCG----------SDPS 150 (1149)
Q Consensus 85 WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~--G~~hs~aLT~~G~Vy~wG~n~--qlG----------~~~~ 150 (1149)
.-..++-|-. .-...++.-.+..++.+.. +.++.+++|++|.+|..-... ..| ...+
T Consensus 95 ~~l~~~~~~~---------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~ 165 (276)
T 3no0_A 95 IPLAEFEYKA---------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN 165 (276)
T ss_dssp EEGGGTTTCS---------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT
T ss_pred EEHHHhhhhc---------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC
Confidence 7655543110 0111122223344555443 455678889999999864333 111 1245
Q ss_pred CCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEE--ecCCeEEEEEecCCcE
Q psy16692 151 QGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIA--CGANHSFVLSKSVSRL 228 (1149)
Q Consensus 151 ~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia--~G~~hs~alt~~~G~V 228 (1149)
+.|+.+........+..+|++|.+.-.-...+-..+.+...... + ..+..+..+. .+.+..++++++ |++
T Consensus 166 d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~-----i--~~~~~lv~~~~~~~~~~i~~~t~~-G~~ 237 (276)
T 3no0_A 166 DETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV-----S--GTKDTLVDLIPIKEEVELLITTKN-GKA 237 (276)
T ss_dssp CCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC-----C--CSSSCEEEEEEESSEEEEEEEETT-SCE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE-----E--cCCCcEEEEEEeCCCCEEEEEcCC-CeE
Confidence 67777655543322323788888777655444333222111111 0 1223344432 244556666666 888
Q ss_pred EE--EecCCCCCCC
Q psy16692 229 YA--FGIGSAVQLD 240 (1149)
Q Consensus 229 y~--wG~N~~GQLG 240 (1149)
.. +-.++--..|
T Consensus 238 ir~~~~~~~i~~~~ 251 (276)
T 3no0_A 238 FYDKINQKDIPLST 251 (276)
T ss_dssp EEEEEEGGGSCBCC
T ss_pred EEeeeCHHHCCCcC
Confidence 88 7665443333
No 61
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=23.99 E-value=3.4e+02 Score=28.60 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=12.9
Q ss_pred ceEEEEeeCCcEEEEeCCC
Q psy16692 5 WHSLALNDCGEVFTWGGDT 23 (1149)
Q Consensus 5 ~HslaLt~dG~VysWG~N~ 23 (1149)
.|++++ -+|+||.+|...
T Consensus 48 ~~~~~~-~~~~lyv~GG~~ 65 (306)
T 3ii7_A 48 DAACVF-WDNVVYILGGSQ 65 (306)
T ss_dssp SCEEEE-ETTEEEEECCBS
T ss_pred eeEEEE-ECCEEEEEeCCC
Confidence 466555 578999999654
No 62
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=23.11 E-value=5.3e+02 Score=27.22 Aligned_cols=17 Identities=6% Similarity=-0.179 Sum_probs=11.7
Q ss_pred CeeEEEecCceEEEecCC
Q psy16692 125 SHCLVLTSSGVVTCTHKE 142 (1149)
Q Consensus 125 ~hs~aLT~~G~Vy~wG~n 142 (1149)
.|+++.. +|.+|..|..
T Consensus 91 ~~~~~~~-~~~lyv~GG~ 107 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGGR 107 (315)
T ss_dssp SCEEEEE-TTEEEEECCE
T ss_pred ceeEEEE-CCEEEEEeCC
Confidence 4555544 7899998873
No 63
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=22.70 E-value=8e+02 Score=27.01 Aligned_cols=133 Identities=8% Similarity=0.029 Sum_probs=69.8
Q ss_pred cEEEEEeeCCcEEEEECCCCCCCCCCCCCCcccccceEeccCCCCcEEEEEeCCCeeEEEecCceEEEecCCC-----CC
Q psy16692 71 WHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKEN-----GC 145 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~I~~Ia~G~~hs~aLT~~G~Vy~wG~n~-----ql 145 (1149)
...+.-+.+|.|..|-..+ |+ ....+.. ....|..++....+.+.-+.+|.|..|-... ..
T Consensus 323 ~~l~sg~~dg~i~vwd~~~-~~------------~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLEN-GE------------LMYTLQG-HTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp TEEEEEETTSCEEEEETTT-TE------------EEEEECC-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEeCCCcEEEEECCC-Cc------------EEEEEeC-CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeee
Confidence 4555566788898885432 11 0111111 2345777887777777777899999997665 11
Q ss_pred CCCCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEecCCeEEEEEecC
Q psy16692 146 GSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSV 225 (1149)
Q Consensus 146 G~~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~G~~hs~alt~~~ 225 (1149)
.......+..++..+.. ++ ...+|.|..|-..+ |++= ..........|..|+.-+...++...++
T Consensus 389 ~~~~~~~~~~~~~~~~~-l~--~~~dg~i~iwd~~~-g~~~-----------~~~~~~~~~~v~~v~~~~~~l~~~~~~~ 453 (464)
T 3v7d_B 389 HHTNLSAITTFYVSDNI-LV--SGSENQFNIYNLRS-GKLV-----------HANILKDADQIWSVNFKGKTLVAAVEKD 453 (464)
T ss_dssp ECTTCCCEEEEEECSSE-EE--EEETTEEEEEETTT-CCEE-----------ESCTTTTCSEEEEEEEETTEEEEEEEET
T ss_pred cCCCCccEEEEEeCCCE-EE--EecCCeEEEEECCC-CcEE-----------ehhhccCCCcEEEEEecCCEEEEEEEeC
Confidence 11122333344443332 22 33477888885433 1111 0001111235677766666666655554
Q ss_pred CcEEEEe
Q psy16692 226 SRLYAFG 232 (1149)
Q Consensus 226 G~Vy~wG 232 (1149)
|.++.|-
T Consensus 454 g~~~i~~ 460 (464)
T 3v7d_B 454 GQSFLEI 460 (464)
T ss_dssp TEEEEEE
T ss_pred CeEEEEE
Confidence 6666553
No 64
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=22.65 E-value=5e+02 Score=27.08 Aligned_cols=18 Identities=11% Similarity=0.071 Sum_probs=12.8
Q ss_pred cEEEEEeeCCcEEEEECCC
Q psy16692 71 WHSLALNDCGEVFTWGGDT 89 (1149)
Q Consensus 71 ~HslaLt~~G~Vy~WG~N~ 89 (1149)
.|+++.. +|++|.+|...
T Consensus 105 ~~~~~~~-~~~lyv~GG~~ 122 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGFD 122 (301)
T ss_dssp SCEEEEE-TTEEEEECCBC
T ss_pred ceeEEEE-CCEEEEEcccC
Confidence 5666554 79999998643
No 65
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=22.00 E-value=7.8e+02 Score=26.65 Aligned_cols=210 Identities=11% Similarity=0.042 Sum_probs=100.5
Q ss_pred CCceEEEEeeCCcEEEEeCCCCCCCCCCCCCCcccccceEecCCCCCcEEEEEeCCCcccccccccCccEEEEEeeCCcE
Q psy16692 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEV 82 (1149)
Q Consensus 3 G~~HslaLt~dG~VysWG~N~~GQLG~g~~~~~~~~~P~~V~~l~~~~IvqVacG~~hs~~Lt~S~G~~HslaLt~~G~V 82 (1149)
+..+.++.|+.|++|..-...--..|.... -.+....+..-.+.+|+.+..-.. -....+.+++|++|.+
T Consensus 52 ~~~~ll~fT~~G~~~~~~~~elp~~~~~a~---G~~i~~~l~l~~~e~i~~~~~~~~-------~~~~~~ll~~T~~G~~ 121 (307)
T 1zi0_A 52 THDHILCFSSRGRVYSMKVYQLPEATRGAR---GRPIVNLLPLEQDERITAILPVTE-------FEEGVKVFMATANGTV 121 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCCCCSSSC---CEEGGGTSCCCTTCCEEEEEEESC-------CCTTCEEEEEETTSEE
T ss_pred CCCEEEEEECCCEEEEEEhhHCcCCCCCCC---CeEhhhccCCCCCCEEEEEEEecc-------CCCCcEEEEEeCCCeE
Confidence 466788999999999997655433332211 111112233234667777644110 0011457788999988
Q ss_pred EEEECCCCCCCCCCCCCCcccccceE-eccCCCCcEEEE--EeCCCeeEEEecCceEEEecCCC--CCC----------C
Q psy16692 83 FTWGGDTHGQLGLESADKKSQSIPKR-VKGLASVSVVQA--CAGYSHCLVLTSSGVVTCTHKEN--GCG----------S 147 (1149)
Q Consensus 83 y~WG~N~~GQLG~g~~~~~~~~~P~~-V~~l~~~~I~~I--a~G~~hs~aLT~~G~Vy~wG~n~--qlG----------~ 147 (1149)
.-.-...+-.... .... ++.-.+..++.+ +.+.++.+++|++|.++-+-... ..| .
T Consensus 122 Krt~l~e~~~~~r---------~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L 192 (307)
T 1zi0_A 122 KKTVLTEFNRLRT---------AGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 192 (307)
T ss_dssp EEEEGGGGTTCCT---------TCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC
T ss_pred EEEEHHHhhcccc---------CCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe
Confidence 8775433211110 0101 111122344433 34667788899999988764333 111 1
Q ss_pred CCCCCeEEEEecCCeeEEEEeCCCCcEEEEecCCCCCcccCCCCCcccccEEecccCCCCEEEEEe--cCCeEEEEEecC
Q psy16692 148 DPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIAC--GANHSFVLSKSV 225 (1149)
Q Consensus 148 ~~~~~V~~Is~G~~hs~a~~Lt~~G~VyswG~n~~GQLG~g~~~~~~~~P~~V~~l~~~~V~~Ia~--G~~hs~alt~~~ 225 (1149)
..++.|+.+..-.....++.+|+.|.+--.-...+-.-+.+...... +. +.. .+..++.+.. +.+..++++++
T Consensus 193 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~--~~-~~~-~~~~lv~~~~v~~~~~l~~~t~~- 267 (307)
T 1zi0_A 193 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS--IK-VTE-RNGLVVGAVQVDDCDQIMMITDA- 267 (307)
T ss_dssp CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES--SC-CCT-TTCSEEEEEEECTTCEEEEEESS-
T ss_pred CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe--eE-ecC-CCCeEEEEEEeCCCceEEEEcCC-
Confidence 24566766644322221222666665444433222211111111101 11 111 1134444333 44556666666
Q ss_pred CcEEEEecCCC
Q psy16692 226 SRLYAFGIGSA 236 (1149)
Q Consensus 226 G~Vy~wG~N~~ 236 (1149)
|.+.-+-.++-
T Consensus 268 g~~ir~~~~~i 278 (307)
T 1zi0_A 268 GTLVRTRVSEI 278 (307)
T ss_dssp CCEEEEEGGGS
T ss_pred CcEEEEecccc
Confidence 88877665443
No 66
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=21.60 E-value=7.5e+02 Score=26.30 Aligned_cols=68 Identities=25% Similarity=0.153 Sum_probs=38.0
Q ss_pred CCcEEEEEeCC--CeeEEEecC---ceEEEecCCC-----CCCCC------------CCCCeEEEEecCCeeEEEEeCCC
Q psy16692 114 SVSVVQACAGY--SHCLVLTSS---GVVTCTHKEN-----GCGSD------------PSQGVQSNLVQDSHTTITSLNSP 171 (1149)
Q Consensus 114 ~~~I~~Ia~G~--~hs~aLT~~---G~Vy~wG~n~-----qlG~~------------~~~~V~~Is~G~~hs~a~~Lt~~ 171 (1149)
...|..++... .+.++-+.+ |.|..|-... .+... ....|..++...+...++.-..+
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 312 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 312 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence 34577776643 333333466 8999997554 11100 24456666665443334336678
Q ss_pred CcEEEEecCC
Q psy16692 172 GELYTWGNNE 181 (1149)
Q Consensus 172 G~VyswG~n~ 181 (1149)
|.|+.|-...
T Consensus 313 g~i~iwd~~~ 322 (397)
T 1sq9_A 313 GKLRFWDVKT 322 (397)
T ss_dssp SEEEEEETTT
T ss_pred CeEEEEEcCC
Confidence 8888886543
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=20.76 E-value=7.9e+02 Score=26.26 Aligned_cols=67 Identities=4% Similarity=-0.140 Sum_probs=36.3
Q ss_pred CcEEEEEeC---CCeeEEEecCceEEEecCCC-CC-C--CCCCCCeEEEEecCCe-eEEEEeCCCCcEEEEecCC
Q psy16692 115 VSVVQACAG---YSHCLVLTSSGVVTCTHKEN-GC-G--SDPSQGVQSNLVQDSH-TTITSLNSPGELYTWGNNE 181 (1149)
Q Consensus 115 ~~I~~Ia~G---~~hs~aLT~~G~Vy~wG~n~-ql-G--~~~~~~V~~Is~G~~h-s~a~~Lt~~G~VyswG~n~ 181 (1149)
..|..++.. ....+.-+.+|.|..|-... +. . ......|..++..... ..++.-..+|.|..|-...
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 356777663 34444445789999997544 10 0 0122344455554433 2332356678888886544
Done!