RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16692
(1149 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 96.5 bits (241), Expect = 3e-21
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 51/154 (33%)
Query: 987 LEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRRE 1046
L++ V RD I+ED +R+L++ +++D KK L+V +F GEE DAGGV RE
Sbjct: 1 LKITVRRDRILEDALRQLSKVSSSDLKKVLEV------------EFVGEEGIDAGGVTRE 48
Query: 1047 FLMLLLKEILDPKYGMFKEYEETRS-IWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFK 1105
F L+ KE+ +P YG+F+ + ++ + +F D
Sbjct: 49 FFTLVSKELFNPSYGLFRYTPDDSGLLYPNPSSFAD------------------------ 84
Query: 1106 EYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYN 1139
+ ++ +G L G A+Y
Sbjct: 85 --------------EDHLKLFRFLGRLLGKALYE 104
Score = 82.2 bits (204), Expect = 2e-16
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 720 YGITEYEETRS--IWFSEDTFEDQNMC---FLIGTLCGLAIYNYTIINMPFPLALYKKIL 774
YG+ Y S ++ + +F D++ +G L G A+Y ++++PF A YKK+L
Sbjct: 62 YGLFRYTPDDSGLLYPNPSSFADEDHLKLFRFLGRLLGKALYEGRLLDLPFSRAFYKKLL 121
Query: 775 DEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
+P+ L+DL++L P L KSL+++LD ED +TF
Sbjct: 122 GKPLSLEDLEELDPELYKSLKELLDN--DGDEDDLELTF 158
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1
domain-containing proteins [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 476
Score = 88.0 bits (218), Expect = 7e-18
Identities = 73/269 (27%), Positives = 103/269 (38%), Gaps = 32/269 (11%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLG-LESADKKSQSIPK-----RVKGLASVSVVQACA 56
G HSL L+ G +++WG + G LG D Q+ V +
Sbjct: 112 GGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSS 171
Query: 57 GYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGL----ESADKKSQSIPKRVKGL 112
SH V+ G S+ L G V++WG G+LG S Q P +V
Sbjct: 172 AKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKK 231
Query: 113 ASVSVVQACAGYSHCLVLTSSGVV-TCTHKENGCGSDPS-------QGVQSNLVQDSHTT 164
A +VQ AG H + LT+ G V + G P+ V +
Sbjct: 232 A---IVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKY 288
Query: 165 ITS-------LNSPGELYTWGNNEYGQMGI---NNSNTTVTKPQRVESLVNLPIALIACG 214
+ L+ GE+Y WG N +GQ+G TKP + L + I I+ G
Sbjct: 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAG 348
Query: 215 ANHSFVLSKSVSRLYAFGIGSAVQLDSPK 243
+HS +L K LYAFG G QL +
Sbjct: 349 ESHSLILRKD-GTLYAFGRGDRGQLGIQE 376
Score = 82.6 bits (204), Expect = 4e-16
Identities = 55/238 (23%), Positives = 94/238 (39%), Gaps = 31/238 (13%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHC 61
G H +AL + G+V+ WG + GQLG S+ + V + ++
Sbjct: 238 AGADHLIALTNEGKVYGWGSNQKGQLG----RPTSERLKLVV-LVGDPFAIRN------- 285
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLES--ADKKSQSIPKRVKGLASVSVVQ 119
+ G HSLAL++ GE++ WG + GQLG S + P + L+ V++
Sbjct: 286 -IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICS 344
Query: 120 ACAGYSHCLVLTSSGVV----TCTHKENGCGSDPSQGVQS-----------NLVQDSHTT 164
AG SH L+L G + + G + + V + + +H
Sbjct: 345 ISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHN 404
Query: 165 ITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLS 222
I + G +Y+WG E+G +G V P + + +I G + F +
Sbjct: 405 IARTDD-GSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVI 461
Score = 71.8 bits (176), Expect = 8e-13
Identities = 67/323 (20%), Positives = 118/323 (36%), Gaps = 52/323 (16%)
Query: 6 HSLALNDCGEVFTWGGDTHGQLGL-ESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVL 64
H+ L V++WG + +LGL K + + S+++ G +H L L
Sbjct: 60 HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119
Query: 65 TSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQS----------IPKRVKGLAS 114
L+ S ND G + G D H + ++ D +P +
Sbjct: 120 DHDGNLY-SWGDNDDGAL---GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSH 175
Query: 115 VSVVQACAGYSHCLVLTSSGVVTCTHKENGCG------SDPSQGV----------QSNLV 158
+ VV+ G+ ++LT+ G V + CG SQ + +V
Sbjct: 176 LRVVKLACGWEISVILTADGRV-YSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIV 234
Query: 159 QDSHTT--ITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLP-IALIACGA 215
Q + + +L + G++Y WG+N+ GQ+G S + V + I +ACG
Sbjct: 235 QLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTS-ERLKLVVLVGDPFAIRNIKYVACGK 293
Query: 216 NHSFVLSKSVSRLYAFGIGSAVQLDSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSG 275
+HS L + +YA+G V+ QL G + +
Sbjct: 294 DHSLALDED-GEIYAWG------------VNIFGQLGAGSDGEIGA--LTTKPNYKQLLS 338
Query: 276 GLVVKKIYSGGDHSIVTVTKSSD 298
G+ + I S G+ + + K
Sbjct: 339 GVTICSI-SAGESHSLILRKDGT 360
Score = 47.1 bits (112), Expect = 4e-05
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 25/167 (14%)
Query: 143 NGCG--------SDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTV 194
NGCG S P + + Q + L +Y+WG+N ++G+ N T V
Sbjct: 31 NGCGINKRARKSSIPIPWIIRKVAQIINKHTHLLVKMASVYSWGSNGMNELGLGNDETKV 90
Query: 195 TKPQRVESLVNLPIALI--ACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKSVHKTPQLI 252
+PQ ++I ACG NHS L LY++G L +HK
Sbjct: 91 DRPQLNPFGRIDKASIIKIACGGNHSLGLDHD-GNLYSWGDNDDGALGR--DIHKDICDQ 147
Query: 253 HGPWIA--------SPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIV 291
+ I +P + G S SH L V K+ G + S++
Sbjct: 148 NNDIIDFDDYELESTPFKV-PGGSSAKSH---LRVVKLACGWEISVI 190
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 83.5 bits (207), Expect = 3e-17
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 722 ITEYEETRSIWFSEDTFE---DQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPI 778
+ +W + + E D+ + +G L G AIYN ++++PFP A +KK+L +PI
Sbjct: 16 FYVTPNSGLLWPNPGSPESSADEELFKFLGALIGKAIYNGILLDLPFPPAFWKKLLGKPI 75
Query: 779 LLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
L+DL+++ P L +SL+ +L+ E+ +TF
Sbjct: 76 TLEDLEEVDPELYRSLKSLLEL--DGDEEELCLTF 108
Score = 38.1 bits (89), Expect = 0.022
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 1087 LIGKEYVPCTYISKYSMFKE-YEETRSIWFSEDTFE---DQNMYFLIGTLCGLAIYNYT- 1141
L+ KE Y +F + +W + + E D+ ++ +G L G AIYN
Sbjct: 2 LLSKELFN----PDYGLFFYVTPNSGLLWPNPGSPESSADEELFKFLGALIGKAIYNGIL 57
Query: 1142 --VRFP 1145
+ FP
Sbjct: 58 LDLPFP 63
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1)
repeat.
Length = 50
Score = 69.5 bits (171), Expect = 6e-15
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 172 GELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVL 221
G +YTWG NEYGQ+G V PQ VE L + + +ACGA+H+ L
Sbjct: 2 GRVYTWGRNEYGQLG-LGDEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 64.9 bits (159), Expect = 2e-13
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 14 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVL 64
G V+TWG + +GQLGL D++ +P+ V+GL+ V VVQ G SH + L
Sbjct: 2 GRVYTWGRNEYGQLGLG--DEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
Score = 64.9 bits (159), Expect = 2e-13
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 80 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVL 130
G V+TWG + +GQLGL D++ +P+ V+GL+ V VVQ G SH + L
Sbjct: 2 GRVYTWGRNEYGQLGLG--DEEDVLVPQLVEGLSGVRVVQVACGASHTVAL 50
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 65.3 bits (160), Expect = 4e-11
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 739 EDQNMCF-LIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDI 797
E+ F IG + G A+Y+ ++++ F YKK+L +P+ L DL+ L P L KSL+ +
Sbjct: 62 EEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWL 121
Query: 798 -LDYREPDLED 807
L+ + D
Sbjct: 122 LLNNDTSEELD 132
Score = 63.0 bits (154), Expect = 2e-10
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1030 VKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFS----EDTFEDQNMY 1085
++F GEE D GGV REF LL KE+ +P YG+F+ ++ + E + +
Sbjct: 9 IEFEGEEGLDGGGVTREFFFLLSKELFNPDYGLFRYSPNDYLLYPNPRSGFANEEHLSYF 68
Query: 1086 FLIGK 1090
IG+
Sbjct: 69 RFIGR 73
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 65.2 bits (159), Expect = 2e-10
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 942 PFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTI 1001
D++ + + I+ + + L + YL ++V RD + ED+
Sbjct: 471 LTKNDSRLGSFISLNKLDIRRIKEDKRRKLFYSL-KQKAKIFDPYLHIKVRRDRVFEDSY 529
Query: 1002 RELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYG 1061
RE+ + +D KK L++ +F GEE DAGG+ RE+L LL KE+ +P YG
Sbjct: 530 REIMDESGDDLKKTLEI------------EFVGEEGIDAGGLTREWLFLLSKEMFNPDYG 577
Query: 1062 MFKEYEETRSIW----FSEDTFEDQNMYFLIGK 1090
+F+ E S E + + +G+
Sbjct: 578 LFEYITEDLYTLPINPLSSINPEHLSYFKFLGR 610
Score = 63.2 bits (154), Expect = 6e-10
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 745 FLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDILDYREPD 804
+G + G AIY+ I+++ F A YKK+L +P+ L DL+ L P L +SL +L+
Sbjct: 606 KFLGRVIGKAIYDSRILDVQFSKAFYKKLLGKPVSLVDLESLDPELYRSLVWLLNNDID- 664
Query: 805 LEDVFGITFRN 815
E + +TF
Sbjct: 665 -ETILDLTFTV 674
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1)
repeat.
Length = 30
Score = 38.6 bits (91), Expect = 4e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQ 26
G +H+LAL G V+ WG +++GQ
Sbjct: 6 AGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 38.6 bits (91), Expect = 4e-04
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 68 TGLWHSLALNDCGEVFTWGGDTHGQ 92
G +H+LAL G V+ WG +++GQ
Sbjct: 6 AGDYHTLALTSDGTVYCWGDNSYGQ 30
Score = 34.0 bits (79), Expect = 0.015
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 160 DSHTTITSLNSPGELYTWGNNEYGQ 184
D HT L S G +Y WG+N YGQ
Sbjct: 8 DYHTLA--LTSDGTVYCWGDNSYGQ 30
>gnl|CDD|238862 cd01824, Phospholipase_B_like, Phospholipase-B_like. This subgroup
of the SGNH-family of lipolytic enzymes may have both
esterase and phospholipase-A/lysophospholipase activity.
It's members may be involved in the conversion of
phosphatidylcholine to fatty acids and
glycerophosphocholine, perhaps in the context of dietary
lipid uptake. Members may be membrane proteins. The
tertiary fold of the SGNH-hydrolases is substantially
different from that of the alpha/beta hydrolase family
and unique among all known hydrolases; Its active site
closely resembles two of the three components of typical
Ser-His-Asp(Glu) triad from other serine hydrolases.
Length = 288
Score = 32.7 bits (75), Expect = 1.1
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 446 KNPGVDMQ--------------LCQDCYDTIARIERESVRSLVSNLAILASHAHLVKSLW 491
K+P VD + LC C D + V++L L IL + ++
Sbjct: 110 KDPRVDFKNDWKLITIFIGGNDLCSLCEDANPGSPQTFVKNLRKALDIL--RDEVPRAFV 167
Query: 492 N--TPPDAEALRMFLTLPLYHEFM 513
N + +LR PL E +
Sbjct: 168 NLVGLLNVASLRSLTKKPLQCETL 191
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 31.0 bits (70), Expect = 5.2
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 988 EVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIY---LAPQVKFRGEEAEDAGGVR 1044
E++ RD ++E T R Y D + + D + + +V EE + +R
Sbjct: 163 ELDAERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKALR 222
Query: 1045 REFL---MLLLKEILDPKYGMFKEYEETRSIWF 1074
RE M + + L +++E SI+F
Sbjct: 223 REAFDAFMQIEPKQLISDEALYREMRLNYSIYF 255
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 30.6 bits (70), Expect = 5.9
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 38/85 (44%)
Query: 906 AFYMPDLATVC----------------------DIRIDY---FRWISGRPNGSTRDFLCN 940
AF MPD+ T+C D+ DY R+ T DF
Sbjct: 335 AFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRF--------TEDFYEE 386
Query: 941 Y-PFIFD-AKA--KTTLLEM-DQRI 960
+I + K K LLE+ +R
Sbjct: 387 NKDWIVELVKREGKPVLLEILPERK 411
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional.
Length = 526
Score = 30.4 bits (68), Expect = 6.5
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 1103 MFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYTV 1142
+ K++ + R+++ E F+ +Y++ L +AI+ ++
Sbjct: 185 LLKDFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASI 224
>gnl|CDD|219908 pfam08568, Kinetochor_Ybp2, Uncharacterized protein family,
YAP/Alf4/glomulin. This entry contains a number of
protein families with apparently unrelated functions.
These include the YAP binding proteins of yeasts. These
are stress response and redox homeostasis proteins,
induced by hydrogen peroxide or induced in response to
alkylating agent methyl methanesulphonate (MMS). The
family includes Aberrant root formation protein 4 (Alf4)
of Arabidopsis thaliana (Mouse-ear cress), which is
required for the initiation of lateral roots independent
from auxin signalling. It may also function in
maintaining the pericycle in the mitotically competent
state needed for lateral root formation. The family
includes glomulin (FAP68), which is essential for normal
development of the vasculature and may represent a
naturally occurring ligand of the immunophilins FKBP59
and FKBP12.
Length = 625
Score = 30.5 bits (69), Expect = 6.5
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 653 QFYVLQRDRTFELVGITVLLLVVPYPLRMLATSLASLILFTAMRNSSVDVFPDFPIV 709
+FYVL EL+ + + YP R LAT+L++ + A+ N+ + D +
Sbjct: 140 KFYVL-----LELLSSLLKRIKTKYPSRFLATALSA--ILNAVTNNPTETLADDKFI 189
>gnl|CDD|132811 cd07278, PX_RICS_like, The phosphoinositide binding Phox Homology
domain of PX-RICS-like proteins. The PX domain is a
phosphoinositide (PI) binding module present in many
proteins with diverse functions such as cell signaling,
vesicular trafficking, protein sorting, and lipid
modification, among others. Members of this family
include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating
protein), and similar proteins. They contain N-terminal
PX and Src Homology 3 (SH3) domains, a central Rho GAP
domain, and C-terminal extensions. They act as Rho
GTPase-activating proteins. PX-RICS is the main isoform
expressed during neural development. It is involved in
neural functions including axon and dendrite extension,
postnatal remodeling, and fine-tuning of neural circuits
during early brain development. The PX domain of PX-RICS
specifically binds phosphatidylinositol 3-phosphate
(PI3P), PI4P, and PI5P. TCGAP is widely expressed in the
brain where it is involved in regulating the outgrowth
of axons and dendrites and is regulated by the protein
tyrosine kinase Fyn. The PX domain is involved in
targeting of proteins to PI-enriched membranes, and may
also be involved in protein-protein interaction.
Length = 114
Score = 28.6 bits (64), Expect = 6.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 303 DDFRVLNPATQ--ILDVNFERLKECEREVEQLKSDETLDQDLLLYLET 348
DDFR+L+ I D F +L E E + + + L Q L YL+
Sbjct: 47 DDFRMLDKHLHQCIYDRKFSQLTELPEECIEKREQQNLHQVLSDYLKR 94
>gnl|CDD|241312 cd13158, PTB_APPL, Adaptor protein containing PH domain, PTB
domain, and Leucine zipper motif (APPL; also called
DCC-interacting protein (DIP)-13alpha)
Phosphotyrosine-binding (PTB) domain. APPL interacts
with oncoprotein serine/threonine kinase AKT2, tumor
suppressor protein DCC (deleted in colorectal cancer),
Rab5, GIPC (GAIP-interacting protein, C terminus), human
follicle-stimulating hormone receptor (FSHR), and the
adiponectin receptors AdipoR1 and AdipoR2. There are two
isoforms of human APPL: APPL1 and APPL2, which share
about 50% sequence identity. APPL has a BAR and a PH
domain near its N terminus, and the two domains are
thought to function as a unit (BAR-PH domain).
C-terminal to this is a PTB domain. Lipid binding assays
show that the BAR, PH, and PTB domains can bind
phospholipids. PTB domains have a common PH-like fold
and are found in various eukaryotic signaling molecules.
This domain was initially shown to binds peptides with a
NPXY motif with differing requirements for
phosphorylation of the tyrosine, although more recent
studies have found that some types of PTB domains can
bind to peptides lack tyrosine residues altogether. In
contrast to SH2 domains, which recognize phosphotyrosine
and adjacent carboxy-terminal residues, PTB-domain
binding specificity is conferred by residues
amino-terminal to the phosphotyrosine. PTB domains are
classified into three groups: phosphotyrosine-dependent
Shc-like, phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains.
Length = 135
Score = 28.8 bits (65), Expect = 7.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 288 HSIVTVTKSSDGVLSDDFRVLNPATQILDVNFE 320
H+I +T+S V SD R+++P TQ+ F
Sbjct: 46 HNIFRMTESHLLVTSDCLRLIDPQTQVTRARFP 78
>gnl|CDD|165374 PHA03092, PHA03092, semaphorin-like protein; Provisional.
Length = 134
Score = 28.8 bits (64), Expect = 8.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 172 GELYTWGNNEYGQMGINNSN--TTVTKPQRVESLVNLPIALIACGANH 217
G +YT+ NN+ + G+ N+N TT K + ++LV CG N+
Sbjct: 42 GAVYTFSNNKLNKTGLANTNYITTSIKVEDKDTLV--------CGTNN 81
>gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel. This
family of ion channels contains 10 or 12 transmembrane
helices. Each protein forms a single pore. It has been
shown that some members of this family form homodimers.
In terms of primary structure, they are unrelated to
known cation channels or other types of anion channels.
Three ClC subfamilies are found in animals. ClC-1 is
involved in setting and restoring the resting membrane
potential of skeletal muscle, while other channels play
important parts in solute concentration mechanisms in
the kidney. These proteins contain two pfam00571
domains.
Length = 345
Score = 29.8 bits (68), Expect = 8.9
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 512 FMNPRQHEILHMPFAGALPAFWIVVFGSLIGICGLGHLDFYRELLLSISNFCDRLFLVGN 571
F N E+ +P L ++ G L G+ G + LLL + RL +
Sbjct: 142 FGNEPLFEVPSLPPLSLLELPLFILLGILCGLLGA----LFVRLLLKVERLFRRLKKLPP 197
Query: 572 SVLLVLCVLM 581
+ L L+
Sbjct: 198 ILRPALGGLL 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 58,065,982
Number of extensions: 5756619
Number of successful extensions: 4746
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4718
Number of HSP's successfully gapped: 49
Length of query: 1149
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1042
Effective length of database: 6,191,724
Effective search space: 6451776408
Effective search space used: 6451776408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (28.7 bits)