RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16692
(1149 letters)
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 201 bits (513), Expect = 6e-57
Identities = 65/291 (22%), Positives = 109/291 (37%), Gaps = 76/291 (26%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ-ACAGYSHC 61
G HS + G+++TWG +G+LG +D + Q PK V+ L VV AC
Sbjct: 167 GGAHSACVTAAGDLYTWGKGRYGRLGH--SDSEDQLKPKLVEALQGHRVVDIACGS---- 220
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQAC 121
G +L L D V++WG +G+LG +P ++ L + VV+
Sbjct: 221 -------GDAQTLCLTDDDTVWSWGDGDYGKLGR--GGSDGCKVPMKIDSLTGLGVVKVE 271
Query: 122 AGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181
G + LT S G +YTWG +
Sbjct: 272 CGSQFSVALTKS--------------------------------------GAVYTWGKGD 293
Query: 182 YGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL-D 240
Y ++G + S+ V +P++V+ L + IA G+ H ++ +Y +G QL D
Sbjct: 294 YHRLG-HGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTED-GEVYTWGDNDEGQLGD 351
Query: 241 SPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIV 291
+ + P+L+ G V ++ G H++
Sbjct: 352 GTTNAIQRPRLVAAL-------------------QGKKVNRVACGSAHTLA 383
Score = 189 bits (483), Expect = 6e-53
Identities = 66/304 (21%), Positives = 113/304 (37%), Gaps = 83/304 (27%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSV--VQACAGYSH 60
G A+ G+++ G G+LG+ +S S P ++ + V + V +G H
Sbjct: 61 GEQTLFAVTADGKLYATGYGAGGRLGIG--GTESVSTPTLLESIQHVFIKKVAVNSGGKH 118
Query: 61 CLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQA 120
CL L+S GEV++WG G+LG ++ P+ ++ L + VV
Sbjct: 119 CLALSSE------------GEVYSWGEAEDGKLGHG--NRSPCDRPRVIESLRGIEVVDV 164
Query: 121 CAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNN 180
AG +H +T++ G+LYTWG
Sbjct: 165 AAGGAHSACVTAA--------------------------------------GDLYTWGKG 186
Query: 181 EYGQMGINNSNTTVTKPQRVESLVNLPIALIACGAN--HSFVLSKSVSRLYAFGIGSAVQ 238
YG++G ++ + KP+ VE+L + IACG+ + L+ ++++G G +
Sbjct: 187 RYGRLG-HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDD-DTVWSWGDGDYGK 244
Query: 239 L-DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSS 297
L K P I GL V K+ G S+ +
Sbjct: 245 LGRGGSDGCKVPMKIDSL-------------------TGLGVVKVECGSQFSVAL---TK 282
Query: 298 DGVL 301
G +
Sbjct: 283 SGAV 286
Score = 135 bits (341), Expect = 3e-34
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G S+AL G V+TWG + +LG S D P++V+GL V+ G HC+
Sbjct: 273 GSQFSVALTKSGAVYTWGKGDYHRLGHGSDD--HVRRPRQVQGLQGKKVIAIATGSLHCV 330
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
T GEV+TWG + GQLG + P+ V L V +
Sbjct: 331 CCTED------------GEVYTWGDNDEGQLGD--GTTNAIQRPRLVAALQGKKVNRVAC 376
Query: 123 GYSHCLVLTSS 133
G +H L ++S
Sbjct: 377 GSAHTLAWSTS 387
Score = 123 bits (311), Expect = 3e-30
Identities = 45/252 (17%), Positives = 78/252 (30%), Gaps = 79/252 (31%)
Query: 51 VVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVK 110
+ L + G ++ WG + GQLG + +P +
Sbjct: 3 HHHHHSSGRENLYFQGS------------GTIYGWGHNHRGQLGG--IEGAKVKVPTPCE 48
Query: 111 GLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNS 170
LA++ VQ G +T+
Sbjct: 49 ALATLRPVQLIGGEQTLFAVTAD------------------------------------- 71
Query: 171 PGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIAL--IACGANHSFVLSKSVSRL 228
G+LY G G++G +V+ P +ES+ ++ I + G H LS +
Sbjct: 72 -GKLYATGYGAGGRLG-IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE-GEV 128
Query: 229 YAFGIGSAVQL-DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGD 287
Y++G +L +S P++I G+ V + +GG
Sbjct: 129 YSWGEAEDGKLGHGNRSPCDRPRVIESLR-------------------GIEVVDVAAGGA 169
Query: 288 HSIVTVTKSSDG 299
HS VT + G
Sbjct: 170 HSAC-VT--AAG 178
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 201 bits (513), Expect = 1e-56
Identities = 63/301 (20%), Positives = 113/301 (37%), Gaps = 79/301 (26%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHC 61
G H LA+ GEV +WG + +GQLGL D + +P++++ + + AG
Sbjct: 128 CGDSHCLAVTMEGEVQSWGRNQNGQLGLG--DTEDSLVPQKIQAFEGIRIKMVAAGA--- 182
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQAC 121
H+ A+ + G+++ WG +G LGL D+ + +P+RV +
Sbjct: 183 ---------EHTAAVTEDGDLYGWGWGRYGNLGL--GDRTDRLVPERVTSTGGEKMSMVA 231
Query: 122 AGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181
G+ H + ++ S G LYT+G ++
Sbjct: 232 CGWRHTISVSYS--------------------------------------GALYTYGWSK 253
Query: 182 YGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL-D 240
YGQ+G + P ++E+L N I+ I+ G H+ L+ +LY +G Q+
Sbjct: 254 YGQLG-HGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD-GKLYGWGWNKFGQVGV 311
Query: 241 SPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDGV 300
+P + P V ++ G H++ VT
Sbjct: 312 GNNLDQCSPVQVRFP-------------------DDQKVVQVSCGWRHTLA-VT--ERNN 349
Query: 301 L 301
+
Sbjct: 350 V 350
Score = 187 bits (478), Expect = 5e-52
Identities = 64/300 (21%), Positives = 104/300 (34%), Gaps = 78/300 (26%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G HS+AL V +WG GQLG D + + P ++ L +V G H +
Sbjct: 24 GASHSVALLSGDIVCSWGRGEDGQLGHG--DAEDRPSPTQLSALDGHQIVSVTCGADHTV 81
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
+ EV++WG G+LG + P +K L + + Q
Sbjct: 82 AYSQ-----------SGMEVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHGIRIKQIAC 128
Query: 123 GYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEY 182
G SHCL +T GE+ +WG N+
Sbjct: 129 GDSHCLAVTME--------------------------------------GEVQSWGRNQN 150
Query: 183 GQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL-DS 241
GQ+G PQ++++ + I ++A GA H+ +++ LY +G G L
Sbjct: 151 GQLG-LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED-GDLYGWGWGRYGNLGLG 208
Query: 242 PKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDGVL 301
++ P+ + GG + + G H+I S G L
Sbjct: 209 DRTDRLVPERVTST-------------------GGEKMSMVACGWRHTISV---SYSGAL 246
Score = 170 bits (434), Expect = 3e-46
Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 60/233 (25%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G H+++++ G ++T+G +GQLG D + IP +++ L++ + Q G+ H +
Sbjct: 233 GWRHTISVSYSGALYTYGWSKYGQLGH--GDLEDHLIPHKLEALSNSFISQISGGWRHTM 290
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
LTS G+++ WG + GQ+G+ + Q P +V+ VVQ
Sbjct: 291 ALTSD------------GKLYGWGWNKFGQVGVG--NNLDQCSPVQVRFPDDQKVVQVSC 336
Query: 123 GYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEY 182
G+ H L +T ++ WG
Sbjct: 337 GWRHTLAVTERN--------------------------------------NVFAWGRGTN 358
Query: 183 GQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGS 235
GQ+G + P+ +E+L A G + S ++ +
Sbjct: 359 GQLG-IGESVDRNFPKIIEALSVD----GASGQHIESSNIDP-SSGKSWVSPA 405
Score = 137 bits (348), Expect = 6e-35
Identities = 51/270 (18%), Positives = 89/270 (32%), Gaps = 78/270 (28%)
Query: 33 DKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQ 92
+ + + V+ AG SH + L S V +WG GQ
Sbjct: 2 MAEDMAADEVTAPP--RKVLIISAGASHSVALLSG------------DIVCSWGRGEDGQ 47
Query: 93 LGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQG 152
LG D + + P ++ L +V G H + + SG
Sbjct: 48 LGHG--DAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSG------------------ 87
Query: 153 VQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIA 212
E+Y+WG ++G++G NS + + P +++L + I IA
Sbjct: 88 -------------------MEVYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIA 127
Query: 213 CGANHSFVLSKSVSRLYAFGIGSAVQL-DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLV 271
CG +H ++ + ++G QL PQ I
Sbjct: 128 CGDSHCLAVTME-GEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE--------------- 171
Query: 272 SHSGGLVVKKIYSGGDHSIVTVTKSSDGVL 301
G+ +K + +G +H+ + DG L
Sbjct: 172 ----GIRIKMVAAGAEHTAAV---TEDGDL 194
Score = 70.4 bits (173), Expect = 1e-12
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHC 61
G H+LA+ + VF WG T+GQLG+ + ++ PK ++ L SV A
Sbjct: 336 CGWRHTLAVTERNNVFAWGRGTNGQLGIG--ESVDRNFPKIIEAL---SVDGAS------ 384
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWG 86
G + D +W
Sbjct: 385 -------GQHIESSNIDPSSGKSWV 402
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 182 bits (464), Expect = 4e-50
Identities = 58/294 (19%), Positives = 108/294 (36%), Gaps = 65/294 (22%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G H + L G+++T G GQLG ++ + ++ L V + S
Sbjct: 172 GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231
Query: 63 VLTS--TTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL--ASVSVV 118
V G + + A++ G V+ +G + QLG +S IP+ + ++ S V
Sbjct: 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGT--PGTESCFIPQNLTSFKNSTKSWV 289
Query: 119 QACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWG 178
G H + + S G + Y+ G
Sbjct: 290 GFSGGQHHTVCMDSEG--------------------------------------KAYSLG 311
Query: 179 NNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQ 238
EYG++G+ + P + L ++ +ACGA+ + ++K R++A+G+G+ Q
Sbjct: 312 RAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKD-GRVFAWGMGTNYQ 368
Query: 239 L-DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIV 291
L +P + G + VV + SGG H+++
Sbjct: 369 LGTGQDEDAWSPVEMMGKQL-----------------ENRVVLSVSSGGQHTVL 405
Score = 175 bits (446), Expect = 1e-47
Identities = 62/302 (20%), Positives = 104/302 (34%), Gaps = 67/302 (22%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
+ H + G V T G GQLGL + + P V VVQA AG H +
Sbjct: 16 KVSHRSHSTEPGLVLTLGQGDVGQLGLGE-NVMERKKPALVSIPE--DVVQAEAGGMHTV 72
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
L+ + G+V+++G + G LG +++ + S+ +P +V+ VVQ A
Sbjct: 73 CLSKS------------GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSA 118
Query: 123 GYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGN--N 180
G SH LT G ++ WG+ +
Sbjct: 119 GDSHTAALTDD--------------------------------------GRVFLWGSFRD 140
Query: 181 EYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL- 239
G +G+ P +V+ V + +A G +H +L+ LY G G QL
Sbjct: 141 NNGVIGLLEPMKKSMVPVQVQLDVP--VVKVASGNDHLVMLTAD-GDLYTLGCGEQGQLG 197
Query: 240 DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDG 299
P+ + P + G + + + G + S +G
Sbjct: 198 RVPELFANRGGRQGLERLLVPKCVMLKSRGS---RGHVRFQDAFCGAYFTFAI---SHEG 251
Query: 300 VL 301
+
Sbjct: 252 HV 253
Score = 160 bits (408), Expect = 1e-42
Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 60/225 (26%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL--ASVSVVQACAGYSH 60
G + + A++ G V+ +G + QLG +S IP+ + ++ S V G
Sbjct: 240 GAYFTFAISHEGHVYGFGLSNYHQLGT--PGTESCFIPQNLTSFKNSTKSWVGFSGGQ-- 295
Query: 61 CLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQA 120
H++ ++ G+ ++ G +G+LGL + +SIP + L +V
Sbjct: 296 ----------HHTVCMDSEGKAYSLGRAEYGRLGLGE-GAEEKSIPTLISRLPAV--SSV 342
Query: 121 CAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNN 180
G S +T G ++ WG
Sbjct: 343 ACGASVGYAVTKDG--------------------------------------RVFAWGMG 364
Query: 181 EYGQMGINNSNTTVTKPQRV--ESLVNLPIALIACGANHSFVLSK 223
Q+G + P + + L N + ++ G H+ +L K
Sbjct: 365 TNYQLG-TGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 408
Score = 119 bits (301), Expect = 7e-29
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G H++ ++ G+ ++ G +G+LGL + +SIP + L +V G S
Sbjct: 294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGE-GAEEKSIPTLISRLPAV--SSVACGASVGY 350
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKG--LASVSVVQA 120
+T G VF WG T+ QLG + P + G L + V+
Sbjct: 351 AVTKD------------GRVFAWGMGTNYQLGTG--QDEDAWSPVEMMGKQLENRVVLSV 396
Query: 121 CAGYSHCLVLTSSG 134
+G H ++L
Sbjct: 397 SSGGQHTVLLVKDK 410
Score = 115 bits (290), Expect = 2e-27
Identities = 52/265 (19%), Positives = 83/265 (31%), Gaps = 85/265 (32%)
Query: 42 RVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKK 101
R A SH T G V T G GQLGL +
Sbjct: 1 RRSPPADAIPKSKKVKVSHRSHSTEP------------GLVLTLGQGDVGQLGLGE-NVM 47
Query: 102 SQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDS 161
+ P V VVQA AG H + L+ S
Sbjct: 48 ERKKPALVSIPE--DVVQAEAGGMHTVCLSKS---------------------------- 77
Query: 162 HTTITSLNSPGELYTWGNNEYGQMGINNS-NTTVTKPQRVESLVNLPIALIACGANHSFV 220
G++Y++G N+ G +G + S + P +VE + ++ G +H+
Sbjct: 78 ----------GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEK--VVQVSAGDSHTAA 125
Query: 221 LSKSVSRLYAFGIG--SAVQL--DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGG 276
L+ R++ +G + + P P +
Sbjct: 126 LTDD-GRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV---------------------QLD 163
Query: 277 LVVKKIYSGGDHSIVTVTKSSDGVL 301
+ V K+ SG DH ++ +T +DG L
Sbjct: 164 VPVVKVASGNDHLVM-LT--ADGDL 185
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 183 bits (465), Expect = 9e-50
Identities = 73/308 (23%), Positives = 110/308 (35%), Gaps = 72/308 (23%)
Query: 2 TGLWHSLALNDCGEVFTWG--GDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS 59
S AL GEV+ WG G LG K Q P +V + ++VQ G
Sbjct: 155 ATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK- 213
Query: 60 HCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGL-ESADKKSQSIPKRVKGLASVSVV 118
H L L++ G VF WG QLG + +++ R GL V
Sbjct: 214 -----------DHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLR--HVK 260
Query: 119 QACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWG 178
+G +HC LT +L +WG
Sbjct: 261 YIASGENHCFALTKD--------------------------------------NKLVSWG 282
Query: 179 NNEYGQMGIN---NSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGS 235
N++GQ G++ VTKP+R+ N+ I IA G +HS +LS+ LY+ G
Sbjct: 283 LNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQD-GDLYSCGRLD 341
Query: 236 AVQL--DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTV 293
++ T + +HG A P+ + K + +G HS+ V
Sbjct: 342 MFEVGIPKDNLPEYTYKDVHGKARAVPL--------PTKLNNVPKFKSVAAGSHHSVA-V 392
Query: 294 TKSSDGVL 301
+G+
Sbjct: 393 A--QNGIA 398
Score = 167 bits (425), Expect = 2e-44
Identities = 64/323 (19%), Positives = 104/323 (32%), Gaps = 104/323 (32%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQ---------------------SIPK 41
G H+LAL++ V++WG + G LG ++++ K Q S P
Sbjct: 75 GGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPA 134
Query: 42 RVKGLASVS------VVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWG--GDTHGQL 93
++ + VVQ A + L S GEV+ WG G L
Sbjct: 135 KIPRESFPPLAEGHKVVQLAATDNMSCALFSN------------GEVYAWGTFRCNEGIL 182
Query: 94 GLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGV 153
G K Q P +V + ++VQ G H L L G
Sbjct: 183 GFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEG------------------- 223
Query: 154 QSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIAC 213
++ WGN + Q+G K + IA
Sbjct: 224 -------------------MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS 264
Query: 214 GANHSFVLSKSVSRLYAFGIGSAVQL-----DSPKSVHKTPQLIHGPWIASPVAMTAGED 268
G NH F L+K ++L ++G+ Q ++ P+ + P
Sbjct: 265 GENHCFALTKD-NKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP------------- 310
Query: 269 SLVSHSGGLVVKKIYSGGDHSIV 291
+V++ I +G HS++
Sbjct: 311 ------DNVVIRSIAAGEHHSLI 327
Score = 109 bits (275), Expect = 3e-25
Identities = 38/298 (12%), Positives = 73/298 (24%), Gaps = 111/298 (37%)
Query: 40 PKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGL-ESA 98
+ ++ A Y H + ++F WG + +LGL A
Sbjct: 3 HHHHHHM--SHIINAQEDYKHMYLSVQP------------LDIFCWGTGSMCELGLGPLA 48
Query: 99 DKKSQSIPKRVKGLAS--VSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSN 156
K P+ L ++ G H L L
Sbjct: 49 KNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEE----------------------- 85
Query: 157 LVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSN------------------------- 191
+++WG N+ G +G + SN
Sbjct: 86 ---------------SNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELE 130
Query: 192 ---TTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL-----DSPK 243
+ + + +A N S L + +YA+G +
Sbjct: 131 STPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSN-GEVYAWGTFRCNEGILGFYQDKI 189
Query: 244 SVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDGVL 301
+ KTP + + ++ G DH + + +G++
Sbjct: 190 KIQKTPWKVPTFS-------------------KYNIVQLAPGKDHILF-LD--EEGMV 225
Score = 107 bits (268), Expect = 2e-24
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 26/161 (16%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADK----------KSQSIPKRVKGLASVSVV 52
G HSL L+ G++++ G ++G+ + K++++P K
Sbjct: 321 GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFK 380
Query: 53 QACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL 112
AG H + + G ++WG +GL + + +P R+K
Sbjct: 381 SVAAGSHHSVAVAQN------------GIAYSWGFGETYAVGLGPFEDDT-EVPTRIKNT 427
Query: 113 AS--VSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQ 151
A+ +++ G + K D +
Sbjct: 428 ATQDHNIILVGCGGQFSVSGGVKLSDEDAEK-RADEMDDLE 467
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 179 bits (457), Expect = 3e-49
Identities = 53/304 (17%), Positives = 90/304 (29%), Gaps = 82/304 (26%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGL---------ESADKKSQSIPKRVKGLASVSVVQ 53
G H + L G+VFT G GQLG K+ P ++ +
Sbjct: 187 GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEA 246
Query: 54 ACAGYSHCLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLA 113
A + S ++ G + QL E K + +K
Sbjct: 247 IWATNYCTFMRES-----------QTQVIWATGLNNFKQLAHE--TKGKEFALTPIKTEL 293
Query: 114 SVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGE 173
+ G H ++LT+ +
Sbjct: 294 K-DIRHIAGGQHHTVILTTDL--------------------------------------K 314
Query: 174 LYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGI 233
G EYG++G+ + V KP V+ L I + CG S+ ++ +LY++G
Sbjct: 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVKKL-TEKIVSVGCGEVCSYAVTID-GKLYSWGS 372
Query: 234 GSAVQL-DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVT 292
G QL P ++ ++ G + GG H+I
Sbjct: 373 GVNNQLGVGDGDDELEPIVVVSK-----------------NTQGKHMLLASGGGQHAIF- 414
Query: 293 VTKS 296
+ K+
Sbjct: 415 LVKA 418
Score = 166 bits (422), Expect = 2e-44
Identities = 53/302 (17%), Positives = 96/302 (31%), Gaps = 72/302 (23%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
L G V G GQLGL D + V G+ V AG H L
Sbjct: 32 HLELPKRRTVLGNVLVCGNGDVGQLGLGE-DILERKRLSPVAGIP--DAVDISAGGMHNL 88
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
VLT + G+++++G + G LG ++++ S+S P + + A
Sbjct: 89 VLTKS------------GDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISA 134
Query: 123 GYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGN--N 180
G SH L G ++ WG+ +
Sbjct: 135 GDSHSACLLED--------------------------------------GRVFAWGSFRD 156
Query: 181 EYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL- 239
+G MG+ K ++ + IA GA+H +L+ + +++ G QL
Sbjct: 157 SHGNMGL---TIDGNKRTPIDLMEGTVCCSIASGADHLVILTTA-GKVFTVGCAEQGQLG 212
Query: 240 DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDG 299
+ + P + + + I++ + + +S
Sbjct: 213 RLSERSISGEGRRGKRDLLRPT--------QLIITRAKPFEAIWATNYCTF--MRESQTQ 262
Query: 300 VL 301
V+
Sbjct: 263 VI 264
Score = 122 bits (308), Expect = 1e-29
Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 18/134 (13%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G H++ L + G +G+LGL P VK L +V G
Sbjct: 302 GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVV-EKPTIVKKLTE-KIVSVGCGEVCSY 359
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLAS--VSVVQA 120
+T G++++WG + QLG+ D + P V + ++ A
Sbjct: 360 AVTID------------GKLYSWGSGVNNQLGVGDGD--DELEPIVVVSKNTQGKHMLLA 405
Query: 121 CAGYSHCLVLTSSG 134
G H + L +
Sbjct: 406 SGGGQHAIFLVKAD 419
Score = 120 bits (302), Expect = 6e-29
Identities = 53/286 (18%), Positives = 87/286 (30%), Gaps = 90/286 (31%)
Query: 20 GGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHSLALNDC 79
G L + +++ P + K + T
Sbjct: 1 GSPRRKALTNNNNAGEAEQQPPKAK------RARIAFHLELPKRRTVL------------ 42
Query: 80 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCT 139
G V G GQLGL D + V G+ V AG H LVLT S
Sbjct: 43 GNVLVCGNGDVGQLGLGE-DILERKRLSPVAGIP--DAVDISAGGMHNLVLTKS------ 93
Query: 140 HKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNS-NTTVTKPQ 198
G++Y++G N+ G +G + S + + +KP
Sbjct: 94 --------------------------------GDIYSFGCNDEGALGRDTSEDGSESKPD 121
Query: 199 RVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQL---DSPKSVHKTPQLIHGP 255
++ I+ G +HS L + R++A+G + +TP +
Sbjct: 122 LIDLPGK--ALCISAGDSHSACLLED-GRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--- 175
Query: 256 WIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDGVL 301
G V I SG DH ++ +T + G +
Sbjct: 176 ------------------MEGTVCCSIASGADHLVI-LT--TAGKV 200
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 128 bits (325), Expect = 4e-33
Identities = 57/249 (22%), Positives = 81/249 (32%), Gaps = 67/249 (26%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHC 61
G +HSLAL D GEV WGG+ GQ + + + V + A
Sbjct: 70 AGNYHSLALKD-GEVIAWGGNEDGQTTVP------------AEARSGVDAI-AA------ 109
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQAC 121
G W S AL D G+V WG D+ GQ V A V
Sbjct: 110 -------GAWASYALKD-GKVIAWGDDSDGQTT--------------VPAEAQSGVTALD 147
Query: 122 AGYSHCLVLTSSGVVTCTHKENGCGSDPSQ-GVQSNLVQ----DSHTTITSLNSPGELYT 176
G L + + GV+ N G QS + H+ L G++
Sbjct: 148 GGVYTALAVKNGGVIAWGD--NYFGQTTVPAEAQSGVDDVAGGIFHSLA--LKD-GKVIA 202
Query: 177 WGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSA 236
WG+N Y Q + + ++ IA G +S L ++ A+G
Sbjct: 203 WGDNRYKQTTVPTEALS-------------GVSAIASGEWYSLALKN--GKVIAWGSSRT 247
Query: 237 VQLDSPKSV 245
V
Sbjct: 248 APSSVQSGV 256
Score = 125 bits (317), Expect = 5e-32
Identities = 65/303 (21%), Positives = 94/303 (31%), Gaps = 82/303 (27%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G +H LAL G+V WG + +GQL + V AG
Sbjct: 32 GYFHGLALKG-GKVLGWGANLNGQLT--------------MPAATQSGVDAIAAGN---- 72
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
+HSLAL D GEV WGG+ GQ V A V A
Sbjct: 73 --------YHSLALKD-GEVIAWGGNEDGQTT--------------VPAEARSGVDAIAA 109
Query: 123 GYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQD-------SHTTITSLNSPGELY 175
G L V+ G SD V + +T + N G +
Sbjct: 110 GAWASYALKDGKVIAW-----GDDSDGQTTVPAEAQSGVTALDGGVYTALAVKN--GGVI 162
Query: 176 TWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGS 235
WG+N +GQ V + + +A G HS L ++ A+G
Sbjct: 163 AWGDNYFGQTT-------------VPAEAQSGVDDVAGGIFHSLALKD--GKVIAWGDNR 207
Query: 236 AVQLDSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVS----HSGGL----VVKKIYSGGD 287
Q P I S +A+ G +++ + V I +G +
Sbjct: 208 YKQTTVPTEALSGVSAIASGEWYS-LALKNG--KVIAWGSSRTAPSSVQSGVSSIEAGPN 264
Query: 288 HSI 290
+
Sbjct: 265 AAY 267
Score = 121 bits (305), Expect = 2e-30
Identities = 42/227 (18%), Positives = 65/227 (28%), Gaps = 67/227 (29%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHC 61
G W S AL D G+V WG D+ GQ V A V G
Sbjct: 109 AGAWASYALKD-GKVIAWGDDSDGQTT--------------VPAEAQSGVTALDGGVYTA 153
Query: 62 LVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQAC 121
L + + G V WG + GQ V A V
Sbjct: 154 LAVKN-------------GGVIAWGDNYFGQTT--------------VPAEAQSGVDDVA 186
Query: 122 AGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQ----DSHTTITSLNSPGELYTW 177
G H L L V+ + P++ + S + + ++ G++ W
Sbjct: 187 GGIFHSLALKDGKVIAWGDNRYKQTTVPTEAL-SGVSAIASGEWYSLALK---NGKVIAW 242
Query: 178 GNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKS 224
G++ + + V+ I G N ++ L
Sbjct: 243 GSSRTAPSSV---QSGVSS--------------IEAGPNAAYALKGG 272
Score = 95.8 bits (239), Expect = 1e-21
Identities = 51/288 (17%), Positives = 75/288 (26%), Gaps = 105/288 (36%)
Query: 14 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHS 73
V WGG+ + + V + G +H
Sbjct: 2 TSVVAWGGNNDWGEA-----------TVPAEAQSGVDAIAG--------------GYFHG 36
Query: 74 LALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSS 133
LAL G+V WG + +GQL + V AG H L L
Sbjct: 37 LALKG-GKVLGWGANLNGQLT--------------MPAATQSGVDAIAAGNYHSLALKD- 80
Query: 134 GVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTT 193
GE+ WG NE GQ
Sbjct: 81 --------------------------------------GEVIAWGGNEDGQTT------- 95
Query: 194 VTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDSPKSVHKTPQLIH 253
V + + IA GA S+ L ++ A+G S Q P +
Sbjct: 96 ------VPAEARSGVDAIAAGAWASYALKD--GKVIAWGDDSDGQTTVPAEAQSGVTALD 147
Query: 254 GPWIASPVAMTAGE----------DSLVSHSGGLVVKKIYSGGDHSIV 291
G + + +A+ G + V V + G HS+
Sbjct: 148 G-GVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLA 194
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 127 bits (322), Expect = 6e-32
Identities = 40/110 (36%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 983 LNQYLEVEVSRDNIVEDTIRELAQYTT---NDFKKPLKVNDTSPIYLAPQVKFRGEEAED 1039
LN YL ++V RD+I++D + L D KK L V +F GE+ D
Sbjct: 2 LNPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYV------------EFEGEQGVD 49
Query: 1040 AGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIG 1089
GGV +EF L+++EI +P GMF E T+ WF+ +FE + + LIG
Sbjct: 50 EGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIG 99
Score = 117 bits (295), Expect = 2e-28
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 720 YGI-TEYEETRSIWFSEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPI 778
G+ T E T+ WF+ +FE + LIG + GLAIYN I+++ FP+ +Y+K++ +
Sbjct: 70 IGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKG 129
Query: 779 LLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
+DL D P L +SL+D+L+Y E ++ED ITF
Sbjct: 130 TFRDLGDSHPVLYQSLKDLLEY-EGNVEDDMMITF 163
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative
splicing, chromosomal rearrangement, cytoplasm,
differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Length = 405
Score = 123 bits (311), Expect = 3e-30
Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 57/195 (29%)
Query: 945 FDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIREL 1004
+ + ++ D + + F L+ + + + V V RD++ ED+ REL
Sbjct: 14 LEVLFQGPHMDFDVKRKY--------FRQELERLDEGLRKEDMAVHVRRDHVFEDSYREL 65
Query: 1005 AQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFK 1064
+ + + K L + F GEE +DAGG+ RE+ M++ +E+ +P Y +F+
Sbjct: 66 HRKSPEEMKNRLYI------------VFEGEEGQDAGGLLREWYMIISREMFNPMYALFR 113
Query: 1065 EYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQN 1124
R + I+ S +
Sbjct: 114 TSPGDRVTY-----------------------TINPSSHANP--------------NHLS 136
Query: 1125 MYFLIGTLCGLAIYN 1139
+ +G + A+Y+
Sbjct: 137 YFKFVGRIVAKAVYD 151
Score = 83.4 bits (207), Expect = 7e-17
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 720 YGI-TEYEETRSIWF----SEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKIL 774
Y + R + S + +G + A+Y+ ++ F + YK IL
Sbjct: 109 YALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHIL 168
Query: 775 DEPILLQDLKDLSPTLAKSLQDILDYREPDLEDV-FGITF 813
+ + D++ + L +L+ D+ + + +TF
Sbjct: 169 GKSVRYTDMESEDYHFYQGLVYLLEN---DVSTLGYDLTF 205
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 115 bits (291), Expect = 8e-28
Identities = 38/178 (21%), Positives = 65/178 (36%), Gaps = 54/178 (30%)
Query: 972 YLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVK 1031
L + + +EVSR+ I E++ R++ + D K L + K
Sbjct: 10 ILRQELSQQQPQAGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMI------------K 57
Query: 1032 FRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEE-TRSIWFSEDTFEDQNMYFLIGK 1090
FRGEE D GGV RE+L LL E+L+P YG+F+ + ++ +
Sbjct: 58 FRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQIN--------------- 102
Query: 1091 EYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYT---VRFP 1145
S E + + +G + G+A+++ F
Sbjct: 103 -----------------------PDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFT 137
Score = 95.0 bits (237), Expect = 8e-21
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 720 YGITEY--EETRSIWF---SEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKIL 774
YG+ +Y ++ ++ S E + +G + G+A+++ I+ F L YK++L
Sbjct: 86 YGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLL 145
Query: 775 DEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
+ I L D++ + P L SL IL+ D+ V TF
Sbjct: 146 GKSITLDDMELVDPDLHNSLVWILEN---DITGVLDHTF 181
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL- conjugation
pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C
3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 111 bits (280), Expect = 3e-26
Identities = 39/181 (21%), Positives = 63/181 (34%), Gaps = 58/181 (32%)
Query: 971 FYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDF-KKPLKVNDTSPIYLAPQ 1029
F L+ P + E+++ R+NI E++ R + D K L +
Sbjct: 29 FRKKLK--KPADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWI----------- 75
Query: 1030 VKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEE-TRSIWFSEDTFEDQNMYFLI 1088
+F E+ D GGV RE+ LL KE+ +P YG+F+ ++ +
Sbjct: 76 -EFESEKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQIN------------- 121
Query: 1089 GKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYF-LIGTLCGLAIYNYT---VRF 1144
S ED YF IG + GLA+++ F
Sbjct: 122 -------------------------PNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFF 156
Query: 1145 P 1145
Sbjct: 157 I 157
Score = 91.9 bits (229), Expect = 9e-20
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 720 YGITEY--EETRSIWF---SEDTFEDQNMCF-LIGTLCGLAIYNYTIINMPFPLALYKKI 773
YG+ EY + ++ S ED F IG + GLA+++ +++ F YK +
Sbjct: 105 YGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIRPFYKMM 164
Query: 774 LDEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
L + I L D++ + SL+ IL+ +L+ +F I
Sbjct: 165 LGKQITLNDMESVDSEYYNSLKWILENDPTELDLMFCIDE 204
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A
{Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 109 bits (276), Expect = 7e-26
Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 55/188 (29%)
Query: 961 QMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVND 1020
M +F Q + L ++++ VSR + ED+ +++ D ++ L V
Sbjct: 1 HMGFRWKLAHFRYLCQ---SNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYV-- 55
Query: 1021 TSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFE 1080
FRGEE D GG+ RE+ LL E+L+P Y +F+ +
Sbjct: 56 ----------IFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCL------- 98
Query: 1081 DQNMYFLIGKEYVPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNY 1140
I+ S + + + IG +A+++
Sbjct: 99 ----------------QINPASTINP--------------DHLSYFCFIGRFIAMALFHG 128
Query: 1141 T---VRFP 1145
F
Sbjct: 129 KFIDTGFS 136
Score = 85.0 bits (211), Expect = 1e-17
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Query: 720 YGITEY--EETRSIWF---SEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKIL 774
Y + EY + + S + + IG +A+++ I+ F L YK++L
Sbjct: 85 YCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRML 144
Query: 775 DEPILLQDLKDLSPTLAKSLQDILDYREPDLEDV-FGITF 813
+ + ++DL+ + SL I D ++E+ + F
Sbjct: 145 SKKLTIKDLESIDTEFYNSLIWIRDN---NIEECGLEMYF 181
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 105 bits (265), Expect = 4e-24
Identities = 41/176 (23%), Positives = 59/176 (33%), Gaps = 54/176 (30%)
Query: 974 FLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFR 1033
F L ++V R NI ED +E+ + T D KK L + KF
Sbjct: 62 FRSQPALRILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMI------------KFD 109
Query: 1034 GEEAEDAGGVRREFLMLLLKEILDPKYGMFKEY-EETRSIWFSEDTFEDQNMYFLIGKEY 1092
GEE D GGV REF LL E+ +P Y +F+ + +I +
Sbjct: 110 GEEGLDYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQIN----------------- 152
Query: 1093 VPCTYISKYSMFKEYEETRSIWFSEDTFEDQNMYFLIGTLCGLAIYNYT---VRFP 1145
S E N + IG + GL +++ F
Sbjct: 153 ---------------------PNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFV 187
Score = 94.3 bits (235), Expect = 2e-20
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 720 YGITEY--EETRSIWF---SEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKIL 774
Y + EY + +I S E N IG + GL +++ ++ F ALYK +L
Sbjct: 136 YCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMML 195
Query: 775 DEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
+ ++LQD++ + + SL +L+ ++ V +TF
Sbjct: 196 RKKVVLQDMEGVDAEVYNSLNWMLEN---SIDGVLDLTF 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.4 bits (164), Expect = 3e-11
Identities = 106/622 (17%), Positives = 198/622 (31%), Gaps = 213/622 (34%)
Query: 23 THGQL-------------GLESADKKSQSIPKRVKGLAS----VSVVQACA---GYSHCL 62
+HG L + ++ ++ +P+ +G A+ + + GY L
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 63 VLTSTTGLWHS---LALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQ 119
V S G + L L + + G D H ++
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-------------------------ALAA 106
Query: 120 ACAGYSHCLVLTSSGVVTCTHKENGCGSDP-SQGVQSNL---VQDSHTTITSLNSPGELY 175
+ ++ + ++ P + S L V + + + ++
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI------- 159
Query: 176 TWGNNEYGQMGINNSNTTVTKPQRVESLVNL-----PI--ALIACGANHSFVLSKSV--- 225
+G GQ G N++ E L +L + LI A L ++
Sbjct: 160 -FG----GQ-G--NTDDYF------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 226 SRLYAFGIGSAVQLDSPKSVHKTPQLIHGPWIASP-VAMTAGEDSLVSHSGGLVVKKI-- 282
+++ G+ L++P + L+ P I+ P + + L + +V K+
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVI----QLAHY---VVTAKLLG 257
Query: 283 YSGGD--HSIVTVTKSSDGVLS----------DDFRVLNPATQILDVNFERLKECEREVE 330
++ G+ + T S G+++ + F + + V F C
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYP 315
Query: 331 QLKSDETLDQDLLLYLETVFLSPGCM----NGSFLQVE------NDEHFSCNSKKFSFIK 380
++ +D L E V P M N + QV+ N H + ++
Sbjct: 316 NTSLPPSILEDSLENNEGV---PSPMLSISNLTQEQVQDYVNKTN-SHLPAGKQ----VE 367
Query: 381 LSLINWFMKLHFSIFGQGFGCVCPTVLGDCVPKSWLYLETVFLSPGCMNGSFLQVENDEH 440
+SL+N + + G P P+S LY G L +
Sbjct: 368 ISLVN--GAKNLVVSG-------P-------PQS-LY------------GLNLTLRK--- 395
Query: 441 FSCNSKNP-GVDMQLCQDCYDTIARI---ERESVRSLVSN--LAILAS-HAHLVKS---- 489
+K P G+D Q +RI ER+ SN L + + H+HL+
Sbjct: 396 ----AKAPSGLD----Q------SRIPFSERKLK---FSNRFLPVASPFHSHLLVPASDL 438
Query: 490 ----LW--NTPPDAEALRMFLTLPLYHEF--MNPRQHE----------ILHMPF----AG 527
L N +A+ +++ P+Y F + R I+ +P
Sbjct: 439 INKDLVKNNVSFNAKDIQI----PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 528 ALPAFWIVVFGSLIGICGLGHL 549
A I+ FG G GLG L
Sbjct: 495 QFKATHILDFGPG-GASGLGVL 515
Score = 63.5 bits (154), Expect = 3e-10
Identities = 109/656 (16%), Positives = 178/656 (27%), Gaps = 301/656 (45%)
Query: 469 SVRSLVSNLAILASHAHLVKSLWNTPPD----AEALRMFLTLPLYHEFMNPRQHEILHMP 524
S R L L SH L P A L+ +F ++IL P
Sbjct: 5 STRPLT-----L-SHGSLEHV-LLVPTASFFIASQLQ--------EQF-----NKILPEP 44
Query: 525 ---FAGAL-PAFWIVVFGSLIGICG--LGHLDFYRE----------LLLSISNFCDRLFL 568
FA P + + G LG++ E L L ++ F + +L
Sbjct: 45 TEGFAADDEPT-------TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYL 96
Query: 569 VGNSVLLVLCVLMFYPLSHIHRFRTPGPIVLMHGTLPLVIYCDQYFFPCPSCYTLALMEP 628
GN IH LA
Sbjct: 97 EGND---------------IH--------------------------------ALAAKLL 109
Query: 629 RSTLTGTLKRASVIVCGLTGLVLSQFYVLQRDRTFELVGITVLLLVVPYPLRMLATSLAS 688
+ T +K +I Y+ R ++ P + S
Sbjct: 110 QENDTTLVKTKELIKN----------YITAR-------------IMAKRPFDKKSNSA-- 144
Query: 689 LILFTAMRNSSVDVFPDFPIVAAYPKNG---INHYGITEYEETRSIWFSEDTFEDQNMCF 745
LF A+ + + F G + Y +EE R ++
Sbjct: 145 --LFRAVGEGNAQLVAIF--------GGQGNTDDY----FEELRDLY------------- 177
Query: 746 LIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKDLSPTLAKSLQDILDYREPDL 805
Y +L+ DL S A++L +++ D
Sbjct: 178 --------QTY--------------------HVLVGDLIKFS---AETLSELIR-TTLDA 205
Query: 806 EDVF--GITFRNWYLLM------SDDYFERLILIFKQC-LIYLLQ-------------QP 843
E VF G+ W L DY L+ I C LI ++Q P
Sbjct: 206 EKVFTQGLNILEW--LENPSNTPDKDY---LLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 844 G-VVDSTNG------DI-------------TFNRKLSFCLQVL-------QK---LNSLN 873
G + G + +F + + VL + SL
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 874 NETLTSSISAG-GRTVSNIRTPAPHGGRKVAYTAFYMPDLATVCDI-------RIDYF-- 923
L S+ G P+P M L+ + ++ ++
Sbjct: 321 PSILEDSLENNEG-------VPSP------------M--LS-ISNLTQEQVQDYVNKTNS 358
Query: 924 -----RWIS-GRPNGSTRDF-LCNYP--------FIFDAKAKTTLLEMDQ-RIQMEHAMN 967
+ + NG+ ++ + P + AKA + L DQ RI +
Sbjct: 359 HLPAGKQVEISLVNGA-KNLVVSGPPQSLYGLNLTLRKAKAPSGL---DQSRI--PFSER 412
Query: 968 QTNFYL-FLQTFNP-HTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDT 1021
+ F FL +P H+ L + D I +D ++ + D + P V DT
Sbjct: 413 KLKFSNRFLPVASPFHS--HLLVP--ASDLINKDLVKNNVSFNAKDIQIP--VYDT 462
Score = 36.6 bits (84), Expect = 0.066
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 43/147 (29%)
Query: 209 ALIACGANHSFVLS-KSVSRLYAFGIGSAVQLDSPKSVHKTPQLIHGPWIASPVAMTAGE 267
AL A A+ V+S +S+ + F G +Q+ P+ S M A
Sbjct: 1769 AL-ASLAD---VMSIESLVEV-VFYRGMTMQVAVPR----------DELGRSNYGMIAIN 1813
Query: 268 DSLVSHSGGL-----VVKKIY--SGGDHSIV-------TVTKSSDGVLSDDFRVLNPATQ 313
V+ S VV+++ +G IV V + D R L+ T
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY------VAAGDLRALDTVTN 1867
Query: 314 ILD------VNFERLKECEREVEQLKS 334
+L+ ++ L++ +E+++
Sbjct: 1868 VLNFIKLQKIDIIELQKSLS-LEEVEG 1893
Score = 30.4 bits (68), Expect = 4.9
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 68/200 (34%)
Query: 910 PDLATVCDIRIDYFRWISGRPNGSTRDFLCNYP-FIFDAKAKTTLLEMDQRIQMEHAMNQ 968
P T+ +F G+ R+ NY IF+ D +++ E +
Sbjct: 1669 PVNLTI------HFGGEKGK---RIRE---NYSAMIFETIV-------DGKLKTEKIFKE 1709
Query: 969 TNFYLFLQTFN-PH-TLN--QY-----LEVEVSRDNIVEDTIRE--------------LA 1005
N + TF L+ Q+ +E + ED ++ L
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---AFED-LKSKGLIPADATFAGHSLG 1765
Query: 1006 QYT----TNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYG 1061
+Y D + + + + V +RG + A V R+ E+ YG
Sbjct: 1766 EYAALASLADV---MSIESL--VEV---VFYRGMTMQVA--VPRD-------ELGRSNYG 1808
Query: 1062 MFKEYEETRSIWFSEDTFED 1081
M + FS++ +
Sbjct: 1809 MIAINPGRVAASFSQEALQY 1828
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 1e-07
Identities = 102/693 (14%), Positives = 198/693 (28%), Gaps = 251/693 (36%)
Query: 287 DHSIVTVTKSSDGVLS----DDFRVLNPATQILDVNFERLKECEREVEQLKSDETLDQD- 341
+ V +LS D + A F L + E+ Q +E L +
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 342 --LLLYLETVFLSPGCMNGSFLQVENDEHFSCNSKKFSFIK---------LSLINWFMKL 390
L+ ++T P M +++ + D ++ N F K L L ++L
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLEL 147
Query: 391 ----HFSIFGQGFGCVCPTVLGDCVPKSWLYLETVFLSPGCMNGSFLQVENDEHF----- 441
+ I G G G K+W+ L+ C++ + + F
Sbjct: 148 RPAKNVLIDGVL-GS------G----KTWVALDV------CLSYKVQCKMDFKIFWLNLK 190
Query: 442 SCNSKNPGVDMQ--LC----------QDCYDTIARIERESVRSLVSNLAILASHAHLVKS 489
+CNS ++M L D I ++ S+++ + L L S +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRL--LKSKPY-ENC 246
Query: 490 L------WNTPPDAEALRMF-------LT------------LPLYHEFMNPRQH------ 518
L +A+A F LT H ++
Sbjct: 247 LLVLLNVQ----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 519 ------EILHMPFAGALPA-------FWIVVFGSLIGICGLGHLDFYRELLLSISNFCDR 565
+ L LP + + I GL D ++ + CD+
Sbjct: 303 VKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHV------NCDK 354
Query: 566 LFLVGNSVLLVLCVLMFYPLSHIHRFRTPGPIVLMHGTLPLVIYCDQYFFPCPSCYTLAL 625
L + ++ + + P + F L + FP
Sbjct: 355 L-----TTIIESSLNVLEPAEYRKMFDR------------LSV------FP--------- 382
Query: 626 ME----PRSTLT---GTLKRASV--IVCGLTGLVLSQFYVLQRDRTFELVGITVLLLVVP 676
P L+ + ++ V +V L L +++ + I + L
Sbjct: 383 -PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----VEKQPKESTISIPSIYLE-- 434
Query: 677 YPLRMLATSLASLILFTAMRNSSVDVFPDFPIVAAYPKNGINHYGITEYEETRSIWFS-- 734
L++ + A+ S VD + I + + + + +Y ++S
Sbjct: 435 --LKVKLENEY------ALHRSIVD---HYNIPKTFDSDDLIPPYLDQY------FYSHI 477
Query: 735 ---------EDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQDLKD 785
+ M FL + F L +KI +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFL---------------DFRF---LEQKIRHDSTAWNASGS 519
Query: 786 LSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFKQCLIYLLQQPG- 844
+ T LQ + Y+ Y+ +D +ERL+ ++ L +
Sbjct: 520 ILNT----LQQLKFYKP--------------YICDNDPKYERLV----NAILDFLPKIEE 557
Query: 845 -VVDSTNGDITFNRKLSFCLQVLQKLNSLNNET 876
++ S D+ L++ +L E
Sbjct: 558 NLICSKYTDL---------LRI-----ALMAED 576
Score = 54.1 bits (129), Expect = 3e-07
Identities = 109/676 (16%), Positives = 198/676 (29%), Gaps = 219/676 (32%)
Query: 457 DCYDTIARIERESVRSLVSNLAILASHAHLVKSLWNTPPDAEALRMFLTL-----PLYHE 511
DC D ++ +S++S H++ S + LR+F TL + +
Sbjct: 34 DCKDV-----QDMPKSILSK----EEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 512 FMNPRQHEILHMPFAGALPAFWIVVFGSLIGICGLGHLDFYRELLLSISNFC---DRLFL 568
F+ E+L + + +++ S I R+ + + DRL+
Sbjct: 82 FVE----EVLRINYK------FLM---SPIK-------TEQRQPSMMTRMYIEQRDRLY- 120
Query: 569 VGNSVLLVLCVLMFYPLS-----HIHRFRT------PGPIVLMHG-------TLPLVIYC 610
N + F + + R P VL+ G + L +
Sbjct: 121 --NDNQV------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 611 D---QYFFPCP-------SCYTLALMEPRSTLTGTLKRASVIVCGLTGLVLSQFYVLQRD 660
Q +C + P + L K I T + R
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNS-----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 661 RTFELVGITVLLLVVPYPLRML-------------ATSLASLILFTAMRNSSVDVFPDFP 707
+ + + LL PY L A +L+ IL T R V DF
Sbjct: 228 HSIQA-ELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKILLTT-RFKQV---TDFL 281
Query: 708 IVAAYPKNGINHY--GITEYEETRSI---WFSEDTFEDQNMCFLIGTLCGLAIYNYTIIN 762
A ++H+ +T +E +S+ + + L + N
Sbjct: 282 SAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQD------LPREVLT--------TN 326
Query: 763 MPFPLALYKKIL-DEPILLQDLKDL-SPTLAKSLQDILDYREPDLEDVFGITFRNWYLLM 820
P L++ + + D + K + L ++ L+ EP +R
Sbjct: 327 -PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-------YR------ 372
Query: 821 SDDYFERLILIFKQCLIYLLQQPGVVDSTNGDIT--------FNRKLSFCLQVLQKLN-- 870
F+RL +F P S + I F+ S + V+ KL+
Sbjct: 373 --KMFDRLS-VF----------P---PSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 871 SL---NNETLTSSISAG----GRTVSNIRTPAPHGGRKV--AYTAFYMPDLATVCDIRID 921
SL + T SI + + N A H R + Y D + +D
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENE--YALH--RSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 922 -YFRW----------ISGRPNGSTRDFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTN 970
YF R FL ++ F+ + K + + + + + Q
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFL-EQKIRHDSTAWNASGSILNTLQQLK 528
Query: 971 FYLFLQTFNPHTLNQYL-EVEVSRDNIVEDTIRELAQYTTNDFKKPLK-------VNDTS 1022
FY Y+ + + + +V + L + N + +
Sbjct: 529 FY-----------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 1023 PIYLAPQVKFRGEEAE 1038
I+ EEA
Sbjct: 578 AIF---------EEAH 584
Score = 41.4 bits (96), Expect = 0.002
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 19/118 (16%)
Query: 981 HTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVNDTS----PIYLAPQVKFRGEE 1036
H + +++ E + +++ + F D I ++
Sbjct: 1 HHHHHHMDFETGE---HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 1037 AEDAGGVRREFLMLLLK----------EILDPKYGMFKE--YEETRSIWFSEDTFEDQ 1082
+ G R F LL K E+L Y E R + +Q
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Score = 37.5 bits (86), Expect = 0.030
Identities = 65/553 (11%), Positives = 136/553 (24%), Gaps = 198/553 (35%)
Query: 24 HGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYS---------------HC----LVL 64
G LG + K + + C Y +C VL
Sbjct: 156 DGVLG---SGK-------------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 65 TSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL------ASVSVV 118
L + + N +++ ++ L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 119 QACAGYSHC--LVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYT 176
A C L+ T VT + + + TT SL+ T
Sbjct: 260 NAFNL--SCKILLTTRFKQVT------------------DFLSAATTTHISLDHHSMTLT 299
Query: 177 WGNNEYGQMGINNSNTTVTK-PQRVESLVNLPIALIAC----GANH------------SF 219
+ + + + P+ V + +++IA G +
Sbjct: 300 PDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 220 VLSKSVS--------RLY-AFGIGSAVQLDSPKSVHKTPQLIHGPWIASPVAMTAGEDSL 270
++ S++ +++ + P S H L+ W + +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSV-------FPPSAHIPTILLSLIWFDVIKSDV--MVVV 408
Query: 271 VS-HSGGLVVKKIYSGGDHSIVTVTKSSDGVLSDDFRVLNPATQILDVNFERLKECERE- 328
H LV K+ + + I + E + E E
Sbjct: 409 NKLHKYSLVEKQ--------------------PKESTI-----SIPSIYLELKVKLENEY 443
Query: 329 ------VEQLKSDETLDQDLLLYLETVFLSPGCMNG---SFL-----QVENDEHFSCNSK 374
V+ +T D D L P ++ S + +E+ E +
Sbjct: 444 ALHRSIVDHYNIPKTFDSD--------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 375 K---FSFIKLSLINWFMKLHFSIFGQGFGCVCPTVLGDCVPKSWLYLETVFLSPGCMNGS 431
F F++ + + + + + + Y +
Sbjct: 496 VFLDFRFLEQKIRH-----------DSTAWNASGSILNTLQQLKFYKPYIC--------- 535
Query: 432 FLQVENDEHFSCNSKNPGVDMQLCQDCYDTIARIERESVRSLVSNLAILASHAHLVKSLW 491
+ND + +L D + +IE + S + L++
Sbjct: 536 ----DNDPKYE----------RLVNAILDFLPKIEENLICS---------KYTDLLRIAL 572
Query: 492 NTPPDA---EALR 501
+A EA +
Sbjct: 573 MAEDEAIFEEAHK 585
Score = 36.8 bits (84), Expect = 0.052
Identities = 39/231 (16%), Positives = 69/231 (29%), Gaps = 66/231 (28%)
Query: 935 RDFLCNYPFIFDA-KAKTTLLEMDQRIQMEHAMNQTNFYLF--LQTFNPHTLNQYLEVEV 991
+F C + D K+ + E+D I + A++ T LF L + + +++E EV
Sbjct: 31 DNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGT-LRLFWTLLSKQEEMVQKFVE-EV 86
Query: 992 SRDNI--------VEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGV 1043
R N E + + + L ND K+ V
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-NDNQVF-----AKYN---------V 131
Query: 1044 RREFLMLLLKEIL---DPK-----YGMF------------KEYEETRSI-----WFS--- 1075
R L L++ L P G+ Y+ + W +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 1076 ----EDTFED-QNMYFLIGKEYVP-CTYISKYSMFKE--YEETRSIWFSED 1118
E E Q + + I + + S + E R + S+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.028
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 14/42 (33%)
Query: 466 ERESVRSLVSNLAILASHAHLVKSLWNTPPD-AEALRMFLTL 506
E+++++ L ++L + A D A AL + T+
Sbjct: 18 EKQALKKLQASLKLYA-------------DDSAPALAIKATM 46
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.4 bits (81), Expect = 0.062
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 18/55 (32%)
Query: 617 CPSCYTLALMEPRSTLTGTLKRASV--IVCGLTGLVLSQFYVLQRD-----RTFE 664
CP C + ++R S +VC L GLVLS V D RTF
Sbjct: 24 CPEC--------KVYPPKIVERFSEGDVVCALCGLVLSDKLV---DTRSEWRTFS 67
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 33.3 bits (75), Expect = 0.59
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 3/130 (2%)
Query: 717 INHYGITEYEETRSIWFSEDTFEDQNMCFL---IGTLCGLAIYNYTIINMPFPLALYKKI 773
I +++YEE F+ + + M L I + L L +
Sbjct: 273 IAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332
Query: 774 LDEPILLQDLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYLLMSDDYFERLILIFK 833
+ LL+ +L L ++L +L E + ++F I W L ++ Y E
Sbjct: 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSA 392
Query: 834 QCLIYLLQQP 843
L+ Q
Sbjct: 393 SPLLSGSQHF 402
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 32.7 bits (74), Expect = 0.85
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 10/107 (9%)
Query: 475 SNLAILASHAHLVKSLWNTPPDAEALRMFLTLPLYHEFMNPRQHEIL---------HMPF 525
+ +I A A K + PD LR F+ P ++ +
Sbjct: 336 APYSITACTAIDQKWNH-SAPDHTVLRAFVGRPGNDHLVHESDEVLQQAVLQDLEKICGR 394
Query: 526 AGALPAFWIVVFGSLIGICGLGHLDFYRELLLSISNFCDRLFLVGNS 572
I + +GH D + + + ++L G +
Sbjct: 395 TLEPKQVIISRLMDGLPAYTVGHADRIQRVREEVLAQYPGIYLAGLA 441
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 31.1 bits (71), Expect = 2.3
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 10/59 (16%)
Query: 254 GPWIASPVAMTAGEDS--LVSHSGG--LVVKKIYSGGDHSIVTVTKSSDGVLSDDFRVL 308
GPW+ + + + G LVV T DG R++
Sbjct: 247 GPWVDKVRNLNFTRPVSPKMRPTKGIHLVVDAKKLPVPQPTYFDTGKQDG------RMV 299
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 30.7 bits (68), Expect = 3.4
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 942 PFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTI 1001
I + + TL +M + E+ ++ FY L+ N + +LE+ + + D I
Sbjct: 796 ILILQSVFECTL-DMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAI 854
Query: 1002 RELAQYTTNDFKKPLKVNDTSPIYLAPQVK--FRGEEAEDAGGVRREFLMLLLKEIL 1056
++ D V VK R A + + + + E
Sbjct: 855 CWAFKHNNRD------VEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 30.3 bits (68), Expect = 3.7
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 9/108 (8%)
Query: 475 SNLAILASHAHLVKSLWNTPPDAEALRMFLTLPLYHEFMNPRQHEIL---------HMPF 525
S+ AI A K P LR ++ ++ ++I+ M
Sbjct: 338 SDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDLSDNDIINIVLEDLKKVMNI 397
Query: 526 AGALPAFWIVVFGSLIGICGLGHLDFYRELLLSISNFCDRLFLVGNSV 573
G + + + +GH +EL ++++ +++ G S
Sbjct: 398 NGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASF 445
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex;
2.3A {Homo sapiens} SCOP: a.118.1.19
Length = 321
Score = 29.9 bits (67), Expect = 4.4
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 941 YPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDT 1000
P IFDA + TL M + E+ ++TNF+L LQ N H +L + ++ +V D+
Sbjct: 113 IPQIFDAVFECTL-NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDS 171
Query: 1001 IRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEIL 1056
I ++T + V DT L ++ +E A + + +L+ I
Sbjct: 172 IIWAFKHTMRN------VADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIF 221
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 7.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 261 VAMT-AGEDSLVSHSGGLVVKKIYSGGDHSIVTVTKSSDGVL 301
V +T AG+ S+ G V++ + GG +VT ++ S V
Sbjct: 479 VLITGAGKGSI----GAEVLQGLLQGGAKVVVTTSRFSKQVT 516
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase
enzyme family, structural genomics, JOIN for structural
genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Length = 333
Score = 29.3 bits (66), Expect = 7.2
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 19/86 (22%)
Query: 767 LALYKKILDEPILLQ--DLKDLSPTLAKSLQDILDYREPDLEDVFGITFRNWYL-----L 819
+ LY+ +D I L +L+ ++L L + Y
Sbjct: 111 MPLYRAAVDLLIHLHDAQTPELARLDPETLS-----EMTRL-------AFSEYRYAILGD 158
Query: 820 MSDDYFERLILIFKQCLIYLLQQPGV 845
++D +R F Q L L+ V
Sbjct: 159 AAEDNRKRFEHRFAQILSAQLEGDMV 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,309,516
Number of extensions: 1048405
Number of successful extensions: 2597
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2317
Number of HSP's successfully gapped: 73
Length of query: 1149
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1045
Effective length of database: 3,798,009
Effective search space: 3968919405
Effective search space used: 3968919405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.7 bits)