RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16692
(1149 letters)
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 374
Score = 97.9 bits (243), Expect = 3e-22
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 19/134 (14%)
Query: 961 QMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDNIVEDTIRELAQYTTNDFKKPLKVND 1020
M +F Q+ + L ++++ VSR + ED+ +++ D ++ L V
Sbjct: 1 HMGFRWKLAHFRYLCQS---NALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYV-- 55
Query: 1021 TSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEILDPKYGMFKEYEETRSIWF----SE 1076
FRGEE D GG+ RE+ LL E+L+P Y +F+ + S
Sbjct: 56 ----------IFRGEEGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST 105
Query: 1077 DTFEDQNMYFLIGK 1090
+ + + IG+
Sbjct: 106 INPDHLSYFCFIGR 119
Score = 56.7 bits (136), Expect = 7e-09
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Query: 713 PKNGINHYGITEYEETRSIWFSEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKK 772
P + Y + S + + IG +A+++ I+ F L YK+
Sbjct: 83 PMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKR 142
Query: 773 ILDEPILLQDLKDLSPTLAKSLQDILDYR--EPDLEDVFGITFRNW 816
+L + + ++DL+ + SL I D E LE F +
Sbjct: 143 MLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEIL 188
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 350
Score = 96.7 bits (240), Expect = 5e-22
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 984 NQYLEVEVSRDNIVEDTIRELAQYT---TNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDA 1040
N YL ++V RD+I++D + L D KK L V +F GE+ D
Sbjct: 1 NPYLRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYV------------EFEGEQGVDE 48
Query: 1041 GGVRREFLMLLLKEILDPKYGMFKEYEETRSIWFSEDTFEDQNMYFLIGKEYVPCTY 1097
GGV +EF L+++EI +P GMF E T+ WF+ +FE + + LIG Y
Sbjct: 49 GGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIY 105
Score = 59.8 bits (144), Expect = 6e-10
Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 723 TEYEETRSIWFSEDTFEDQNMCFLIGTLCGLAIYNYTIINMPFPLALYKKILDEPILLQD 782
T E T+ WF+ +FE + LIG + GLAIYN I+++ FP+ +Y+K++ + +D
Sbjct: 72 TYDESTKLFWFNPSSFETEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRD 131
Query: 783 LKDLSPTLAKSLQDILDYREPDLEDVFGITF 813
L D P L +SL+D+L+Y E ++ED ITF
Sbjct: 132 LGDSHPVLYQSLKDLLEY-EGNVEDDMMITF 161
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 89.1 bits (219), Expect = 3e-19
Identities = 48/248 (19%), Positives = 81/248 (32%), Gaps = 45/248 (18%)
Query: 6 HSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLT 65
H + G V T G GQLGL + + P V VVQA AG H + L+
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGE-NVMERKKPALVSIPE--DVVQAEAGGMHTVCLS 63
Query: 66 STTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL------------- 112
+ G+V+++G + G LG +++ + S+ +P +V+
Sbjct: 64 KS------------GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHT 111
Query: 113 -ASVSVVQACAGYSHCLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSP 171
A + S G++ K + + +
Sbjct: 112 AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTA-D 170
Query: 172 GELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLP---------------IALIACGAN 216
G+LYT G E GQ+G ++ + +P CGA
Sbjct: 171 GDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY 230
Query: 217 HSFVLSKS 224
+F +S
Sbjct: 231 FTFAISHE 238
Score = 84.9 bits (208), Expect = 9e-18
Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 90/366 (24%)
Query: 2 TGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPK-------RVKGLASVSVVQA 54
G H++ L+ G+V+++G + G LG +++ + S+ +P V+ A S A
Sbjct: 54 AGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAA 113
Query: 55 CAGYSHCLVLTSTTGLWHSLALND--------------------------------CGEV 82
+ S + L + G++
Sbjct: 114 LTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDL 173
Query: 83 FTWGGDTHGQLGLESADKKSQS--------------IPKRVKGLASVSVVQACAGYSHCL 128
+T G GQLG ++ + K V A G
Sbjct: 174 YTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTF 233
Query: 129 VLTSSGVVTCTHKENGCGS----------------DPSQGVQSNLVQDSHTTITSLNSPG 172
++ G V N + ++S G
Sbjct: 234 AISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEG 293
Query: 173 ELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFG 232
+ Y+ G EYG++G+ + P + L ++ +ACGA+ + ++K R++A+G
Sbjct: 294 KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKD-GRVFAWG 350
Query: 233 IGSAVQL-DSPKSVHKTPQLIHGPWIASPVAMTAGEDSLVSHSGGLVVKKIYSGGDHSIV 291
+G+ QL +P + G + VV + SGG H+++
Sbjct: 351 MGTNYQLGTGQDEDAWSPVEMMGKQLE-----------------NRVVLSVSSGGQHTVL 393
Query: 292 TVTKSS 297
V
Sbjct: 394 LVKDKE 399
Score = 71.0 bits (172), Expect = 3e-13
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 158 VQDSHTTITSLNSPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANH 217
V+ SH + ++ PG + T G + GQ+G+ + KP V + + G H
Sbjct: 3 VKVSHRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMH 58
Query: 218 SFVLSKSVSRLYAFGIGSAVQL 239
+ LSKS ++Y+FG L
Sbjct: 59 TVCLSKS-GQVYSFGCNDEGAL 79
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 68.2 bits (165), Expect = 5e-13
Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 23/256 (8%)
Query: 3 GLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCL 62
G +H LAL G+V WG + +GQL + +A + + S+
Sbjct: 34 GYFHGLALKG-GKVLGWGANLNGQLTMPAATQSGV---DAIAAGNYHSLALKDGEVIAWG 89
Query: 63 VLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACA 122
+ A + + ++ + S + + S V A
Sbjct: 90 GNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALD 149
Query: 123 GYSH-CLVLTSSGVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNE 181
G + L + + GV+ G + P++ + G++ WG+N
Sbjct: 150 GGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALKDGKVIAWGDNR 209
Query: 182 YGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLYAFGIGSAVQLDS 241
Y Q + E+L ++ IA G +S L ++ A+G
Sbjct: 210 YKQTTVP-----------TEALSG--VSAIASGEWYSLALKN--GKVIAWGSSRTAPSSV 254
Query: 242 P---KSVHKTPQLIHG 254
S+ P +
Sbjct: 255 QSGVSSIEAGPNAAYA 270
Score = 52.5 bits (124), Expect = 1e-07
Identities = 19/112 (16%), Positives = 31/112 (27%), Gaps = 27/112 (24%)
Query: 1 MTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSH 60
+ G G+V WG + + Q V A V +G +
Sbjct: 187 VAGGIFHSLALKDGKVIAWGDNRYKQTT--------------VPTEALSGVSAIASGEWY 232
Query: 61 CLVLTSTTGLWHSLALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGL 112
L L + G+V WG ++S ++ P L
Sbjct: 233 SLALKN-------------GKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYAL 271
Score = 49.0 bits (115), Expect = 1e-06
Identities = 33/172 (19%), Positives = 52/172 (30%), Gaps = 40/172 (23%)
Query: 14 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSTTGLWHS 73
V WGG+ ++P + V GY H L L
Sbjct: 4 TSVVAWGGNNDWG---------EATVPAEAQS----GVDAIAGGYFHGLALKG------- 43
Query: 74 LALNDCGEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSS 133
G+V WG + +GQL + V AG H L L
Sbjct: 44 ------GKVLGWGANLNGQL--------------TMPAATQSGVDAIAAGNYHSLALKDG 83
Query: 134 GVVTCTHKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQM 185
V+ E+G + P++ + + G++ WG++ GQ
Sbjct: 84 EVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQT 135
Score = 37.4 bits (85), Expect = 0.007
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 14/85 (16%)
Query: 170 SPGELYTWGNNEYGQMGINNSNTTVTKPQRVESLVNLPIALIACGANHSFVLSKSVSRLY 229
+ + WG N + V++ IA G H L ++
Sbjct: 2 AATSVVAWGGNNDW----GEATVPAEAQSGVDA--------IAGGYFHGLALKG--GKVL 47
Query: 230 AFGIGSAVQLDSPKSVHKTPQLIHG 254
+G QL P + I
Sbjct: 48 GWGANLNGQLTMPAATQSGVDAIAA 72
Score = 37.0 bits (84), Expect = 0.009
Identities = 17/110 (15%), Positives = 25/110 (22%), Gaps = 52/110 (47%)
Query: 80 GEVFTWGGDTHGQLGLESADKKSQSIPKRVKGLASVSVVQACAGYSHCLVLTSSGVVTCT 139
V WGG+ ++P + V GY H L L
Sbjct: 4 TSVVAWGGNNDWG---------EATVPAEAQS----GVDAIAGGYFHGLALKG------- 43
Query: 140 HKENGCGSDPSQGVQSNLVQDSHTTITSLNSPGELYTWGNNEYGQMGINN 189
G++ WG N GQ+ +
Sbjct: 44 --------------------------------GKVLGWGANLNGQLTMPA 61
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 321
Score = 28.6 bits (64), Expect = 4.6
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 936 DFLCNYPFIFDAKAKTTLLEMDQRIQMEHAMNQTNFYLFLQTFNPHTLNQYLEVEVSRDN 995
P IFDA + TL +++ + E+ ++TNF+L LQ N H +L + ++
Sbjct: 108 HITAEIPQIFDAVFECTLNMINKDFE-EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFK 166
Query: 996 IVEDTIRELAQYTTNDFKKPLKVNDTSPIYLAPQVKFRGEEAEDAGGVRREFLMLLLKEI 1055
+V D+I ++T + V DT L ++ +E A + + +L+ I
Sbjct: 167 LVLDSIIWAFKHTMRN------VADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHI 220
Query: 1056 L 1056
Sbjct: 221 F 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,268,545
Number of extensions: 201850
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 20
Length of query: 1149
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1054
Effective length of database: 1,103,246
Effective search space: 1162821284
Effective search space used: 1162821284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.7 bits)