BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16693
         (196 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]
          Length = 471

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 30  YLTPDNSLSALQSIQNVSSSNP----IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           ++   +SLSA+ +I  +   +P    +   I+++  + K V    F W PSHVGI GNE 
Sbjct: 79  FVICSDSLSAIMAIHGMDVRHPYVLQVLYAIKSISQQEKIVV---FMWCPSHVGIPGNEM 135

Query: 86  ADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNP 145
           AD LAKEALSS +     +P +D +   K  I + W  EW     NKL  I     PW P
Sbjct: 136 ADTLAKEALSSTNLAELPVPASDLRCLIKKYIRSRWQHEWDEQHSNKLHSIHPTIGPWPP 195

Query: 146 PFSMSRKEQVSITRLRIG 163
                R+E++ + R+RIG
Sbjct: 196 CQREKRREEIVLARIRIG 213


>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1212

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            +SLSAL+++   S   P+  +I N++  N  V S+ F WVPSHVGI GNE+AD+ A  A 
Sbjct: 1002 DSLSALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAA 1061

Query: 95   SSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQ 154
                  +  IP+ D +R  +  +L  W  +W +   NKL  +K     W       R  +
Sbjct: 1062 HKTLTKIR-IPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVKPTLGEWKNCRHQERFIE 1120

Query: 155  VSITRLRIG 163
            V + RLRIG
Sbjct: 1121 VILCRLRIG 1129


>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1210

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 1/129 (0%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            +SLSAL+++   S   P+  +I N++  N  V S+ F WVPSHVGI GNE+AD+ A  A 
Sbjct: 999  DSLSALKALHIKSECEPLVGDILNMVLINSKVISMRFCWVPSHVGIPGNEKADKCASLAA 1058

Query: 95   SSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQ 154
                  +  IP+ D +R  +  +L  W  +W +   NKL  +K     W       R  +
Sbjct: 1059 HKTLTKIR-IPLKDSQRTIRLALLAKWQQQWDSCTSNKLHLVKPTLGEWKNCRHQERFIE 1117

Query: 155  VSITRLRIG 163
            V + RLRIG
Sbjct: 1118 VILCRLRIG 1126


>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]
          Length = 261

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 75/142 (52%), Gaps = 13/142 (9%)

Query: 35  NSLSALQSIQNVSSSNPIAREI----RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLA 90
           +SLS+L ++ N   ++P    I     NL+ K K V    F W PSHVGI GNE ADRLA
Sbjct: 99  DSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVGILGNEVADRLA 155

Query: 91  KEALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFS 148
           K+AL     PV  +P+   D+K   +S + + W  EW    DNKL  I+     W     
Sbjct: 156 KQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDEETDNKLHSIQPVISEWKQGPQ 212

Query: 149 MSRKEQVSITRLRIGPC-ISHG 169
           + R+ ++ + R RIG   ++HG
Sbjct: 213 IDRRGEIVLARARIGHSHLTHG 234


>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]
          Length = 502

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 79/153 (51%), Gaps = 14/153 (9%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREI----RNLLDKNKHVFSLHFTWVPSHVG 79
           K E Q  +  D SLS+L ++ N   ++P    I     NL+ K K V    F W PSHVG
Sbjct: 135 KDEDQFNICSD-SLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVG 190

Query: 80  IAGNEEADRLAKEALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTEWANLADNKLRQIK 137
           I GNE ADRLAK+AL     PV  +P+   D+K   +S + + W  EW    DNKL  I+
Sbjct: 191 ILGNEVADRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDEETDNKLHSIQ 247

Query: 138 EENRPWNPPFSMSRKEQVSITRLRIGPC-ISHG 169
                W     + R+ ++ + R RIG   ++HG
Sbjct: 248 PVISEWKQGPQIDRRGEIVLARARIGHSHLTHG 280


>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]
          Length = 364

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 71  FTWVPSHVGIAGNEEADRLAKEALSSNSPPVNT-IPINDFKRFFKSKILTTWNTEWANLA 129
           F W PSHVGI GNE AD LAK+AL  N   +N  IP  DFK   +S + T W +EW    
Sbjct: 68  FIWCPSHVGIPGNETADTLAKQALGMNI--LNCPIPHTDFKPITRSFVKTQWQSEWDQET 125

Query: 130 DNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIG 163
            NKL  I+ +   W P     R+E++ I R+RIG
Sbjct: 126 GNKLHDIQPDIGSWPPCQREKRREEIVIARVRIG 159


>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
          Length = 1222

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 82/164 (50%), Gaps = 11/164 (6%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK-NKHVFSLHFTWVPSHVG 79
              + SE   ++   +S SALQ++  + +  P+  +   LLD        + F WVPSHVG
Sbjct: 1005 AVKASERSKFIICSDSKSALQALGRMKTDIPLVHKSLKLLDLITADRRDVTFIWVPSHVG 1064

Query: 80   IAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEE 139
            I GNE ADR AK AL +++     IP +D ++   S     W   W     +KLRQI  +
Sbjct: 1065 IEGNEAADREAKRAL-NHAVSGTQIPYSDLRQSIASATYREWQNRWEAETHSKLRQIVAD 1123

Query: 140  NRPWNPPF-SMSRKEQVSITRLRIG-PCISHG------SPPMLE 175
             R W P    ++R+   +++RLRIG   I+H        PP+ E
Sbjct: 1124 VR-WRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCE 1166


>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]
          Length = 397

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREI----RNLLDKNKHVFSLHFTWVPSHVG 79
           K E Q  +  D SLS+L ++ N   ++P    I     NL+ K K V    F W PSHVG
Sbjct: 184 KDEDQFNICSD-SLSSLTALSNCDITHPYLLSILTKQNNLVRKGKKVV---FIWCPSHVG 239

Query: 80  IAGNEEADRLAKEALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTEWANLADNKLRQIK 137
           I GNE ADR AK+AL     PV  +P+   D+K   +S + + W  EW    DNKL  I+
Sbjct: 240 ILGNEVADRQAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDGETDNKLHIIQ 296

Query: 138 EENRPWNPPFSMSRKEQVSITRLRIGPC-ISHG 169
                W     + R+ ++ +   RIG   ++HG
Sbjct: 297 PVISEWKQGPQIDRRGEIVLACARIGHSHLTHG 329


>gi|443713753|gb|ELU06453.1| hypothetical protein CAPTEDRAFT_215116 [Capitella teleta]
          Length = 266

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 7/135 (5%)

Query: 30  YLTPDNSLSALQSIQNVSSSNP----IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           ++   +SLSA+ +I  +   +P    +   I+++  + K V    F W PSHVGI GNE 
Sbjct: 134 FVICSDSLSAIMAIHGMDVHHPYVLQVLYAIKSISQQEKIVV---FMWCPSHVGIPGNEM 190

Query: 86  ADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNP 145
           A  LA++ALSS +     +P +D +   K  I + W  EW    +NKL  I     PW P
Sbjct: 191 AHTLAEKALSSTNLAELPVPASDLRGLIKKYIRSQWQHEWEEQHNNKLHSIHPTIGPWPP 250

Query: 146 PFSMSRKEQVSITRL 160
                R+E++ + R+
Sbjct: 251 CQREKRREEIVLVRI 265


>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]
          Length = 400

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 21/165 (12%)

Query: 41  QSIQNVSSSNPIAREIRNLLDK----NKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSS 96
           Q I N +  +P   +I   L+K    +K    L  TW PSHVG+ GNE AD LAKEALS 
Sbjct: 72  QGIGNFNIKHPYVVKI---LEKCTLLHKKGIDLVMTWCPSHVGVMGNERADLLAKEALSF 128

Query: 97  NSPPVNTIPINDFK----RFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRK 152
            +  +  IP +DFK     F+K K    W  +W++  +NKL  I+     W       R+
Sbjct: 129 TTCTIR-IPSSDFKPITHEFYKEK----WQEQWSSEQENKLYCIQPTLGKWAKSSREIRR 183

Query: 153 EQVSITRLRIGPC-ISHGSPPMLELPATKKPIVSPKKLCLQTHHL 196
           E++ + R RIG   ++HG     E+P    P+  P +  L   H+
Sbjct: 184 EEIVLARARIGHSHLTHGYLLRREMP----PVCIPCQNILSIKHI 224



 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 58  NLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPI--NDFKRFFKS 115
           NL  K K V    F W PS+VGI GNE ADRLAK+AL     PV  +P+   D+K   +S
Sbjct: 260 NLDRKGKLVV---FIWCPSYVGILGNEVADRLAKQALVM---PVTKLPLPHTDYKSPIRS 313

Query: 116 KILTTWNTEWANLADNKLRQIK 137
            + + W  E     DNKL  I+
Sbjct: 314 YVKSLWQNERDEETDNKLHTIQ 335


>gi|443694031|gb|ELT95266.1| hypothetical protein CAPTEDRAFT_227918 [Capitella teleta]
          Length = 574

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 68/129 (52%), Gaps = 17/129 (13%)

Query: 71  FTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFK----RFFKSKILTTWNTEWA 126
             W PSHVG+ GNE AD LAKEALS  +  +  IP +DFK     FFK K    W  +W+
Sbjct: 1   MAWCPSHVGVMGNERADLLAKEALSFTTCTIR-IPSSDFKPITHEFFKEK----WQEQWS 55

Query: 127 NLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPC-ISHGS------PPMLELPAT 179
           +  +NKL  I+     W       R+E++ + R RIG   ++HG       PP+  +P  
Sbjct: 56  SEQENKLYSIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLVRREMPPVC-IPCQ 114

Query: 180 KKPIVSPKK 188
           KK  +SP +
Sbjct: 115 KKRDLSPSE 123


>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]
          Length = 619

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 10/139 (7%)

Query: 30  YLTPDNSLSALQSIQNV----SSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           ++   +S S++ +I ++    S    I ++  NL  ++K +    F W PSHVGI GNE 
Sbjct: 54  FVICTDSFSSILAISSIDLIHSYVQSILQKCTNLAGRDKRII---FIWCPSHVGIPGNET 110

Query: 86  ADRLAKEALSSNSPPVNT-IPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWN 144
           AD LA++A   N   +N  IP  DFK   +S + T W +E      NKL  I+ +   W 
Sbjct: 111 ADTLAQQASGMN--ILNCPIPHTDFKPITRSFVETQWQSESDQETGNKLHDIEPDIGSWP 168

Query: 145 PPFSMSRKEQVSITRLRIG 163
           P     R++++ I RLRIG
Sbjct: 169 PCQREKRRDEIVIARLRIG 187


>gi|443710566|gb|ELU04776.1| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta]
          Length = 377

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 12/136 (8%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREI--RNLLDKNKHVFSLHF 71
           YQV        ++ Q +L   +SLS+LQ+I N +  +P   +I  +  L   K ++ L  
Sbjct: 230 YQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIY-LVM 288

Query: 72  TWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFK----RFFKSKILTTWNTEWAN 127
            W PSHVG+ GNE AD LAKEALS  +  +  IP +DFK     FFK K    W  +W++
Sbjct: 289 AWCPSHVGVMGNERADLLAKEALSFTTCTIR-IPSSDFKPITHEFFKEK----WQEQWSS 343

Query: 128 LADNKLRQIKEENRPW 143
             +NKL  I+     W
Sbjct: 344 EQENKLYCIQPTLGKW 359


>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1199

 Score = 71.6 bits (174), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 9/134 (6%)

Query: 35   NSLSALQSIQNVSS-SNPIAREIRNLL----DKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
            +SLS +++++ +    NP+   + +LL       +HV      WVP H  I GN  AD+L
Sbjct: 1024 DSLSVVKALKTLKKHRNPVLVSLYSLLCTIYTSKQHVV---VCWVPGHREIQGNVMADQL 1080

Query: 90   AKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSM 149
            A  A  S++     IP  D K + K KI   W + W     NKL  IK +   W PP S 
Sbjct: 1081 AVSAHDSSANTSIAIPALDLKPYLKRKIRAYWQSTWDRQTHNKLHVIKPQLGHW-PPISK 1139

Query: 150  SRKEQVSITRLRIG 163
            SR  +V++TRLR G
Sbjct: 1140 SRYTEVTLTRLRTG 1153


>gi|6635955|gb|AAF20019.1|AF134900_2 pol-like protein [Aedes aegypti]
          Length = 1208

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 91/186 (48%), Gaps = 19/186 (10%)

Query: 4    IPDTCD----EHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            +PD C     E     +  T  A K  C +     +S S L +I + S+ +P  + ++  
Sbjct: 980  LPDQCSVFSAEAAAILLASTTPAPKPICVI----SDSASVLATINSSSTRHPWIQAVQ-- 1033

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILT 119
              KN    ++ F WVP H GI GN EAD LA +   S        P  D K + KS+I +
Sbjct: 1034 --KNSPSQTV-FLWVPGHCGIRGNVEADHLASKG-RSGRLFTRLTPGMDLKNWTKSQIRS 1089

Query: 120  TWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCISHGSPPML-ELPA 178
            +W  EW NL D  +R+IK E + W    + +R++Q  ++RLR G   +H +  M  E P 
Sbjct: 1090 SWALEWVNLRDKFIRKIKGETKRWID--TNNRRDQQVLSRLRTGH--THATHNMGNERPF 1145

Query: 179  TKKPIV 184
             KK IV
Sbjct: 1146 RKKCIV 1151


>gi|443724607|gb|ELU12531.1| hypothetical protein CAPTEDRAFT_208903 [Capitella teleta]
          Length = 397

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 76/153 (49%), Gaps = 14/153 (9%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREI----RNLLDKNKHVFSLHFTWVPSHVG 79
           K E Q  +  D SLS+L ++ N   ++P    I     NL+ K K V    F W PSHVG
Sbjct: 184 KDEDQFNICSD-SLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVG 239

Query: 80  IAGNEEADRLAKEALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTEWANLADNKLRQIK 137
           I GNE ADRLAK+AL     PV  +P+   D+K   +S + +    EW    DNKL  I+
Sbjct: 240 ILGNEVADRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLRQNEWDEETDNKLHTIQ 296

Query: 138 EENRPWNPPFSMSRKEQVSITRLRIGPC-ISHG 169
                W     + R+ ++ +    IG   ++HG
Sbjct: 297 PVISEWKQGPQIDRRGEIVLACACIGHSHLTHG 329


>gi|443700898|gb|ELT99633.1| hypothetical protein CAPTEDRAFT_212630, partial [Capitella teleta]
          Length = 300

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 12/130 (9%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREI--RNLLDKNKHVFSLHF 71
           YQV        ++ Q +L   +SLS+LQ+I N +  +P   +I  +  L   K ++ L  
Sbjct: 161 YQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILQKCTLLHKKGIY-LVM 219

Query: 72  TWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFK----RFFKSKILTTWNTEWAN 127
            W PSHVG+ GNE AD LAKEALS  +  +  +P +DFK     F+K K    W  +W++
Sbjct: 220 AWCPSHVGVMGNERADLLAKEALSFTTCTIR-VPSSDFKPITHEFYKEK----WQEQWSS 274

Query: 128 LADNKLRQIK 137
             +NKL  I+
Sbjct: 275 EQENKLYCIQ 284


>gi|443730003|gb|ELU15698.1| hypothetical protein CAPTEDRAFT_201116 [Capitella teleta]
          Length = 243

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 13/151 (8%)

Query: 31  LTPDNSLSALQSIQNVSSSNPIAREI----RNLLDKNKHVFSLHFTWVPSHVGIAGNEEA 86
           L    ++ +L ++ N   ++P    I     NL+ K K V    F W PSHVGI GNE A
Sbjct: 100 LPSSRTIRSLTALSNCDITHPYLLSILTKQNNLVRKGKLVV---FIWCPSHVGILGNEVA 156

Query: 87  DRLAKEALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWN 144
           DRLAK+AL     PV  +P+   D+K   +S + + W  EW    DNKL  I+     W 
Sbjct: 157 DRLAKQALVM---PVTKLPLPHTDYKSPIRSYVKSLWQNEWDEETDNKLHSIQPVISEWK 213

Query: 145 PPFSMSRKEQVSITRLRIGPCISHGSPPMLE 175
               + R+  ++ T + +   I  G P + E
Sbjct: 214 QGPQIDRRAVLTATEV-VQSRILRGIPSITE 243


>gi|328697366|ref|XP_003240318.1| PREDICTED: hypothetical protein LOC100575042 [Acyrthosiphon pisum]
          Length = 891

 Score = 69.7 bits (169), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 7/129 (5%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHF 71
           I+  V L  T E ++    L   +SLS L + +N S  N I   I+  L ++K   ++ F
Sbjct: 192 IFEGVKLANTLETNDI---LLISDSLSTLLAFKNTSPRNEITSNIQACLVQSKK--NIVF 246

Query: 72  TWVPSHVGIAGNEEADRLAKEALSSN-SPPVNTIPINDFKRFFKSKILTTWNTEWANLA- 129
            WVPSH GI GNE+AD+ A++A  +  +P +N I   D K     KIL++W   W ++  
Sbjct: 247 MWVPSHTGIIGNEKADKHAEQATQTILNPTINNISSIDIKNSINQKILSSWQNYWNSITL 306

Query: 130 DNKLRQIKE 138
            NKL+ IK+
Sbjct: 307 SNKLKNIKK 315


>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1035

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 35  NSLSALQSIQNVSS-SNPIAREIRNLL----DKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           +SLS +++++ +    NP+   + +LL       +HV      WVP H  I GN  AD+L
Sbjct: 858 DSLSVVKALKTLKKHKNPVLASLYSLLCTVYALKQHVV---VCWVPGHREIQGNVLADQL 914

Query: 90  AKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSM 149
           A  A  + +     IP  D K   K K+   W + W     NKL  IK +   W PP S 
Sbjct: 915 AASAHENAAHTFLAIPALDLKPLLKRKLRAYWQSIWDTQTQNKLHAIKPQLGEW-PPASK 973

Query: 150 SRKEQVSITRLRIG 163
           SR+ ++++TRLR G
Sbjct: 974 SRRTEITLTRLRTG 987


>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 1397

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 35   NSLSALQSIQ-NVSSSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKE 92
            +SLS + ++     S NP+  ++  N+ +      S+   WVP H GI GNE  D+ A+E
Sbjct: 1171 DSLSVVTALSCGKCSKNPVFNKLLNNMHEAYNQNLSIVLCWVPGHAGITGNEMVDKNARE 1230

Query: 93   ALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRK 152
            A S ++  ++++P  D     +  + + W  EW    DNKL  +K       P   ++R 
Sbjct: 1231 AASRHTIDISSVPGVDLNPVVRRGLRSHWQVEWDKQVDNKLHLVKPHLSKVLPQ-KLNRF 1289

Query: 153  EQVSITRLRIG 163
             +V++ RLRIG
Sbjct: 1290 TEVTLARLRIG 1300


>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]
          Length = 233

 Score = 66.2 bits (160), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 67  FSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWA 126
           F L   W PSH+G+ GNE AD LAKEALS  +  V  IP  DF     S     W   W+
Sbjct: 79  FDLVILWCPSHIGVVGNERADLLAKEALSFTACDVR-IPAFDFNSVAYSFYRDKWQALWS 137

Query: 127 NLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPC-ISHGSPPMLELP 177
              +NKL  ++   +         R++++ + R RIG   ++HG     ELP
Sbjct: 138 LEQNNKLHSVQPIIKKLTNSSREDRRKEIVLARARIGHTHLTHGYLLRRELP 189


>gi|442759667|gb|JAA71992.1| Putative outcast ele5 orf1 -h 1e-40 -j 4 [Ixodes ricinus]
          Length = 116

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 50  NPIAREIRN-LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPIND 108
           NP+  EIRN L   +K    +   WVPS VGI GNE+ADR+A  A       ++ IP  D
Sbjct: 6   NPLVLEIRNRLFSASKRKKEITLCWVPSRVGIPGNEDADRVASSA-KDRQVDLHKIPYTD 64

Query: 109 FKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRL 160
           +K   K      W  EW    +NKL  +K   + W       R  +V + RL
Sbjct: 65  YKHALKKSTKCRWQEEWNREMNNKLHAVKPLIQEWESARHRERFYEVVLCRL 116


>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial
           [Acyrthosiphon pisum]
          Length = 164

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 10/118 (8%)

Query: 67  FSLHFTWVPSHVGIAGNEEADRLAKEALSS-NSPPVNTIPINDFKRFFKSKILTTWNTEW 125
             + + W P H GI GNE+AD  A +A SS ++P +N     D K+  K  +   W  +W
Sbjct: 3   MDICYMWAPGHCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLIQW 62

Query: 126 ANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPC-ISH------GSPPMLEL 176
            N    KL QIK   + W  P  ++RKE+  + RLRIG   I+H        PP+ E+
Sbjct: 63  IN-QHTKLNQIKNNIQTWKNP-GLNRKEETILNRLRIGHTFITHRHLMEKNDPPICEM 118


>gi|443720278|gb|ELU10076.1| hypothetical protein CAPTEDRAFT_219461 [Capitella teleta]
          Length = 498

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 37  LSALQSIQNVSSSNPIAREIRN----LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKE 92
           LS++ +I ++   +P  + I      L  ++K +    F W PSHVGI GNE AD +AK+
Sbjct: 145 LSSILAISSIDLIHPYVQSILQKCTCLAGRDKRII---FIWCPSHVGIPGNETADTVAKQ 201

Query: 93  ALSSNSPPVNT-IPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNP 145
           AL  N   +N  IP  DFK    S + T W +EW     NKL  I+ +   W P
Sbjct: 202 ALGMNI--LNCHIPHTDFKPITCSFVKTQWQSEWDQETGNKLHDIQPDIGSWPP 253


>gi|443691275|gb|ELT93184.1| hypothetical protein CAPTEDRAFT_223991 [Capitella teleta]
          Length = 391

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 71  FTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTEWANL 128
           F W PS+VGI G+E ADRL K+AL     PV  +P+  +DFK    S + + W +EW + 
Sbjct: 277 FLWCPSYVGILGDEVADRLTKQALVM---PVTDLPLSHSDFKYPICSIVKSFWQSEWDDE 333

Query: 129 ADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIG 163
            +NKL  ++      N      R+E++ +T  RIG
Sbjct: 334 TENKLHSVQPVISERNKGIRKDRREEIVLTSARIG 368


>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1199

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 73   WVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK 132
            WVP H  I GN  AD LA      ++     IP  D K   K K+   W + W     NK
Sbjct: 1064 WVPGHREIQGNVMADHLAASTHDCSANTSIAIPALDLKPLLKRKLRAYWQSTWDQQTHNK 1123

Query: 133  LRQIKEENRPWNPPFSMSRKEQVSITRLRIG 163
            L  IK +   W PP S SR  +V++TRLR G
Sbjct: 1124 LHVIKPQLGHW-PPISKSRYTEVTLTRLRTG 1153


>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1199

 Score = 63.5 bits (153), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 73   WVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK 132
            WVP H  I GN  AD LA      ++     IP  D K   K K+   W + W     NK
Sbjct: 1064 WVPGHREIQGNVMADHLAASTHDCSANTSIAIPALDLKPLLKRKLRAYWQSTWDQQTHNK 1123

Query: 133  LRQIKEENRPWNPPFSMSRKEQVSITRLRIG 163
            L  IK +   W PP S SR  +V++TRLR G
Sbjct: 1124 LHVIKPQLGHW-PPISKSRYTEVTLTRLRTG 1153


>gi|12597214|dbj|BAB21511.1| TRAS3 [Bombyx mori]
          Length = 1682

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 13/123 (10%)

Query: 14   YQVDL------TGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKN---K 64
            YQ +L      T    KS+ + +    +S+SALQ+I N  S +P+A E R  +  +    
Sbjct: 1437 YQAELLALCVATTEVRKSKSKSFGVYSDSMSALQTITNYDSPHPLAVEARQNIKASLLQG 1496

Query: 65   HVFSLHFTWVPSHVGIAGNEEADRLAKEAL--SSNSPPVNTIPINDFKRFFKSKILTTWN 122
               +LH  W+ +H G+ GNE AD LAKEA   S   P  +  PI+  KR  +   L  WN
Sbjct: 1497 KAVTLH--WIKAHAGLKGNERADGLAKEAAENSRKRPDYDRCPISFVKRSLRMTTLEEWN 1554

Query: 123  TEW 125
              +
Sbjct: 1555 RRY 1557


>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
          Length = 1227

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 7/131 (5%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            +SLS+L +I+N + ++P  +E+R++L  + H   +   WVPSH GI GNE AD+ A+E  
Sbjct: 1026 DSLSSLSAIRNWNHNDPTTQEVRHIL--SSHPKKITLLWVPSHQGIHGNELADKAAQEM- 1082

Query: 95   SSNSPPVNTIPIN--DFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRK 152
               +P +   P N  D K   K  +     +EWA L  ++ + I      + PP ++ ++
Sbjct: 1083 -RLTPSILFTPFNSKDLKSRIKLYLKEKKLSEWA-LFMHRYQSINPNCIMFKPPTNVHKR 1140

Query: 153  EQVSITRLRIG 163
            E  +  RLRIG
Sbjct: 1141 ECATFIRLRIG 1151


>gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
          Length = 1162

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDK----NKHVFSLHFTWVPSHVGIAGNEEADRLA 90
            +S +AL ++ N  S +P+A +IR +L +    NK V      W+ +H G+ GNE AD+LA
Sbjct: 953  DSKAALLTVINHGSLHPLAVDIRKMLKQCALQNKTV---ALYWIKAHAGLEGNERADQLA 1009

Query: 91   KEA--LSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
            KEA  LS  SP  +  P++  KR  +S  L  WN  + +
Sbjct: 1010 KEAALLSKKSPNYDLCPVSYVKRIIRSGSLDEWNRRYRD 1048


>gi|328697220|ref|XP_001949504.2| PREDICTED: hypothetical protein LOC100162931 [Acyrthosiphon pisum]
          Length = 1915

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNL------LDKNKHVFSLHFTWVPSHVGIAGNEEADR 88
            +SLSAL S+QN+ S + I R+I+N        DKN     + ++WVP H  I GNE AD 
Sbjct: 1017 DSLSALTSLQNLYSPSDIVRKIQNTHYIPKQQDKN-----ITYSWVPGHCNIDGNELADS 1071

Query: 89   LAKEALSS-NSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRP 142
             AK A SS NS  +     ND KR  +   L     EW  ++  KL +IK    P
Sbjct: 1072 AAKLAHSSPNSLSLPIFSFNDIKRVIEKDTLLHCQKEWNEMS-TKLNEIKRSTLP 1125


>gi|2736044|gb|AAB94039.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
          Length = 488

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 11  HIYYQVDLTGTAEKS-----ECQ---VYLTPDNSLSALQSIQNVSSSNPIAREI-RNLLD 61
           H +YQ +     + +     ECQ   V +  D S SAL+++      +P  R+I R +  
Sbjct: 281 HTHYQAEAVAILKATMWFAEECQGNKVAIISD-SQSALKALYRTQEVSPTIRDIKRTITT 339

Query: 62  KNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTW 121
             +    +   W   H G AGNE ADR AKEA+ S    V   P++  K   K + L  W
Sbjct: 340 IKRQGRQIDLYWTKGHAGQAGNEMADRAAKEAVISGQRYVMPRPVSWVKALIKKETLREW 399

Query: 122 NTEWAN 127
            T WA 
Sbjct: 400 ATRWAG 405


>gi|443691945|gb|ELT93673.1| hypothetical protein CAPTEDRAFT_224783 [Capitella teleta]
          Length = 354

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 12/95 (12%)

Query: 36  SLSALQSIQNVSSSNPIAREI----RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           SLS+L ++ N   ++P    I     NL+ K K V    F W PSH+GI GNE ADRLAK
Sbjct: 33  SLSSLTALSNCDITHPYLLSILSKQNNLVRKGKLVV---FVWCPSHLGILGNEVADRLAK 89

Query: 92  EALSSNSPPVNTIPI--NDFKRFFKSKILTTWNTE 124
           +AL     PV  +P+   D+K   +S + + W  +
Sbjct: 90  QALVM---PVTKLPLPQTDYKSPIRSYVKSLWQND 121


>gi|326475951|gb|EGD99960.1| hypothetical protein TESG_08624 [Trichophyton tonsurans CBS 112818]
          Length = 1605

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 35   NSLSALQSIQNV--SSSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S S LQ++ N    S   I R I ++  D   H  S+   W+PSH    GN+ ADRLAK
Sbjct: 1370 DSKSGLQTLTNQRNGSGQHIVRAIAKSARDLKAHGVSIRLQWIPSHCNNPGNDTADRLAK 1429

Query: 92   EALSSN-SPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LRQIKEE---NRPWNPP 146
            EA+ +  S P   + ++  K F + ++L  W++EW + +    LR+I      N   +  
Sbjct: 1430 EAVGTQPSHPFQNL-LSREKAFIRDRVLAEWDSEWKSSSKGAHLRRIDASLPGNHTRHLY 1488

Query: 147  FSMSRKEQVSITRLRIG 163
             ++ R     +T+LR G
Sbjct: 1489 GALPRGRAYLLTQLRTG 1505


>gi|443690773|gb|ELT92824.1| hypothetical protein CAPTEDRAFT_204342 [Capitella teleta]
          Length = 294

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 71  FTWVPSHVGIAGNEEADRLAKEALSSNSPPVNT-IPINDFKRFFKSKILTTWNTEWANLA 129
           F W PSHVGI  NE    LAK+AL  N   +N  IP   FK   +S + T   +EW    
Sbjct: 195 FIWCPSHVGIPENET---LAKQALGMNI--LNCPIPHTAFKPIARSFVKTQRQSEWDQET 249

Query: 130 DNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIG 163
            N+L  I+ +   W P     R+E++ I RLRIG
Sbjct: 250 GNELHDIQPDIGSWPPCQREKRREEIVIARLRIG 283


>gi|427791927|gb|JAA61415.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1045

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 15/146 (10%)

Query: 22  AEKSECQVYLTPDNSLSALQSIQNVS----SSNPIAREIRNLLDKNKHVFSLHFTWVPSH 77
           AE+   Q      +S SALQ++ N      + + +A + + L        S+ F W+PSH
Sbjct: 825 AEEIPVQPVAVLSDSKSALQTLANPRRAGLTGSLLAAKYQALAASGA---SVSFHWLPSH 881

Query: 78  VGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIK 137
           VGIAGNEEAD LAK A    +P    +   D+ +    ++L T + + + +A+ +  ++ 
Sbjct: 882 VGIAGNEEADTLAKAAHQPGTPYTRAVAARDYTQARLKRLLLTVHPD-SRVANGRGPKLL 940

Query: 138 EENRPWNPPFSMSRKEQVSITRLRIG 163
                  P   +SR+++ ++ RLR G
Sbjct: 941 -------PETGLSRRDRAALLRLRTG 959


>gi|443734745|gb|ELU18611.1| hypothetical protein CAPTEDRAFT_216906 [Capitella teleta]
          Length = 252

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREI--RNLLDKNKHVFSLHF 71
           YQV        ++ Q +L   +SLS+LQ+I N +  +P   +I  +  L   K ++ L  
Sbjct: 161 YQVLTLLECSANDQQQFLIATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIY-LVM 219

Query: 72  TWVPSHVGIAGNEEADRLAKEALS 95
            W PSHVG+ GNE AD LAKEALS
Sbjct: 220 AWCPSHVGVMGNERADLLAKEALS 243


>gi|358376861|dbj|GAA93349.1| transposon I factor [Aspergillus kawachii IFO 4308]
          Length = 362

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 21/145 (14%)

Query: 35  NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S+SAL +IQ   N S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 130 DSMSALLAIQKPGNKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAK 189

Query: 92  EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
           EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 190 EA----AIPGRTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 245

Query: 141 RPWNPPFSMSRKEQVSITRLRIGPC 165
           R +    S+ R     +T++R G C
Sbjct: 246 RLYG---SLPRNRAYLLTQIRSGHC 267


>gi|443699889|gb|ELT99143.1| hypothetical protein CAPTEDRAFT_215477 [Capitella teleta]
          Length = 347

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 14/123 (11%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHV----F 67
           IY  + L   A   E Q+ +  D SLS+LQ++ N + ++P   +I   L+K   +    F
Sbjct: 175 IYEVLTLLECAASYE-QILIVTD-SLSSLQALGNFNITHPYVFKI---LEKYTILYNRGF 229

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFK----RFFKSKILTTWNT 123
            L   W PSHVG+ GN  AD LAK+ALS  +  V  IP +DFK     F++ K     + 
Sbjct: 230 DLVMLWCPSHVGVVGNARADLLAKKALSFTACNVR-IPASDFKSVAYSFYRDKRAGALDR 288

Query: 124 EWA 126
            W+
Sbjct: 289 VWS 291


>gi|255940992|ref|XP_002561265.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585888|emb|CAP93621.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1249

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 63/145 (43%), Gaps = 21/145 (14%)

Query: 35   NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
             S+SALQ+IQ   N S    I   +   ++   H  ++   W+P H    GN+ ADRLAK
Sbjct: 1007 GSMSALQAIQTPGNKSGQRIIHAILEAAINTKTHGVTIRLQWIPGHCAAPGNDSADRLAK 1066

Query: 92   EALSSNSPPVNTIP----INDFKRFFKSKILTTWNTEWANLAD-NKLRQI------KEEN 140
            EA    + P  T P    ++  K F +  I   W  EW    +   LR I      K   
Sbjct: 1067 EA----AIPGKTHPFCPLLSREKAFVRKNIYVQWEKEWKESREGGNLRTIDNALPAKYTR 1122

Query: 141  RPWNPPFSMSRKEQVSITRLRIGPC 165
            R + P   + R     +T+LR G C
Sbjct: 1123 RLYGP---LPRNRAYLLTQLRTGHC 1144


>gi|443727119|gb|ELU14007.1| hypothetical protein CAPTEDRAFT_217934 [Capitella teleta]
          Length = 664

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK----NKHVFSL 69
           YQV        ++ Q +L   +SLS+LQ+I N +  +P   +I   L+K    +K    L
Sbjct: 261 YQVLTLLECSTNDQQQFLIATDSLSSLQAIGNFNIKHPYVFKI---LEKCTLLHKKGIDL 317

Query: 70  HFTWVPSHVGIAGNEEADRLAKEALS 95
              W PSHVG+ GNE AD LAKEALS
Sbjct: 318 VMAWCPSHVGVMGNERADLLAKEALS 343


>gi|119196745|ref|XP_001248976.1| hypothetical protein CIMG_02747 [Coccidioides immitis RS]
          Length = 2000

 Score = 55.8 bits (133), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 18/126 (14%)

Query: 16   VDLTGT-AEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHV-FSLHF 71
            +DL  T A   +C ++   DN  +A+Q+I+N   SS   I  E    LD  ++  + + F
Sbjct: 1635 LDLHATGATPRKCAIFT--DNQ-AAIQAIRNPKHSSGQYILLEAIQALDMLRNFGWEVQF 1691

Query: 72   TWVPSHVGIAGNEEADRLAKEALSSNSPPVNT--IPINDFKRFFKSKILTT--------W 121
             W+P+HVG+ GNEEADR+AKEA   + P +N   +P  D  R   +   +T        W
Sbjct: 1692 RWIPAHVGVPGNEEADRMAKEATGVD-PGINIERLPETDPLRILTATTKSTIRQRMKHEW 1750

Query: 122  NTEWAN 127
             T W N
Sbjct: 1751 ETSWEN 1756


>gi|443706301|gb|ELU02423.1| hypothetical protein CAPTEDRAFT_206267 [Capitella teleta]
          Length = 357

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 7/86 (8%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK----NKHVFSL 69
           YQV        ++ Q +L   NSLS+LQ++ N +  +P   +I   L+K    +K    L
Sbjct: 261 YQVLTLLECLANDQQQFLIATNSLSSLQALGNFNIKHPYVFKI---LEKCTLLHKKGIDL 317

Query: 70  HFTWVPSHVGIAGNEEADRLAKEALS 95
             +W PSHVG+ GNE AD LAKEALS
Sbjct: 318 VISWCPSHVGVMGNERADLLAKEALS 343


>gi|443686560|gb|ELT89792.1| hypothetical protein CAPTEDRAFT_191632 [Capitella teleta]
          Length = 257

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 7/86 (8%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK----NKHVFSL 69
           YQV        ++ Q +L   NSLS+LQ++ N +  +P   +I   L+K    +K    L
Sbjct: 161 YQVLTLLECLANDQQQFLIATNSLSSLQALGNFNIKHPYVFKI---LEKCTLLHKKGIDL 217

Query: 70  HFTWVPSHVGIAGNEEADRLAKEALS 95
             +W PSHVG+ GNE AD LAKEALS
Sbjct: 218 VISWCPSHVGVMGNERADLLAKEALS 243


>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1913

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 13/119 (10%)

Query: 16   VDLTGTAEKSECQVYLTPDNSLSALQSIQNV--SSSNPIAREIRNLLDKNKHV-FSLHFT 72
            +  TGTA   +C ++   DN  +A+Q+++N   SS   I  E   +LD+ + + + + F 
Sbjct: 1666 IHATGTA-PGKCAIFT--DNQ-AAVQAVRNPKHSSGQYILVEAIQVLDRLRDLGWEVQFH 1721

Query: 73   WVPSHVGIAGNEEADRLAKEA----LSSNSPPVNTIP--INDFKRFFKSKILTTWNTEW 125
            W+P+HVG+ GNEEADRLAK A    L++  P  + I   +   K   +  +   W T W
Sbjct: 1722 WIPAHVGVPGNEEADRLAKRAADPTLNTEQPEPDLIRTLLASTKSTIRQAMKGEWETSW 1780


>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1753

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 9/117 (7%)

Query: 16   VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHV-FSLHFTWV 74
            +  TGTA   +C ++     ++ A+++ +N SS   I  E   +LD+ + + + + F W+
Sbjct: 1506 IHATGTA-PGKCAIFTDNQAAVQAVRNPKN-SSGQYILVEAIQVLDRLRDLGWEVQFHWI 1563

Query: 75   PSHVGIAGNEEADRLAKE----ALSSNSPPVNTIP--INDFKRFFKSKILTTWNTEW 125
            P+HVG+ GNEEADRLAK     AL++  P  + I   +   K   +  +   W T W
Sbjct: 1564 PAHVGVPGNEEADRLAKRAADPALNTEQPEPDLIRTLLATTKSTIRQAMKGEWETSW 1620


>gi|358376848|dbj|GAA93341.1| transposon I factor, partial [Aspergillus kawachii IFO 4308]
          Length = 595

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 21/145 (14%)

Query: 35  NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S+SAL +IQ   N S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 363 DSMSALLAIQKPGNKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAK 422

Query: 92  EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLAD-NKLRQI------KEEN 140
           EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 423 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 478

Query: 141 RPWNPPFSMSRKEQVSITRLRIGPC 165
           R +    S+ R     +T++R G C
Sbjct: 479 RLYG---SLPRNRAYLLTQIRSGHC 500


>gi|358376777|dbj|GAA93294.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 255

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVPSHVGIAGNEEADRLA 90
           +S+SALQ+I+N S++    R IR +L     + +    +   WVP H    GN+E DRLA
Sbjct: 132 DSMSALQAIRN-SANKSGQRIIRAILQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLA 190

Query: 91  KEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQI 136
           KEA+           ++    F + ++L  W  EWA       RQI
Sbjct: 191 KEAVGPRKMHPFKPLLSRENGFIRKRVLNEWKEEWAKSTKGGHRQI 236


>gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila melanogaster]
          Length = 1219

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 22/146 (15%)

Query: 30   YLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
            ++   +SLSA+ SIQN ++++     IR+L+   +H   +   W+P H GI GNE AD+ 
Sbjct: 1006 FIICSDSLSAVDSIQNTNNNSFYPSRIRSLI--TQHAPKIKIMWIPGHSGIKGNELADQA 1063

Query: 90   AKEALSSNSPPVNTIPIN--DFKRFFKSKILTT----------WNTEWANLADNKLRQIK 137
            AK A  S+ P + T  IN  D K+  K+ + T           W         +    +K
Sbjct: 1064 AKSA--SSMPLILTPNINTTDIKKHLKADLATKQKEHIINCSPWYQSINTNTSHPCDYLK 1121

Query: 138  EENRPWNPPFSMSRKEQVSITRLRIG 163
            + +  W      +R +Q+ I RLR+G
Sbjct: 1122 QSHPNW------TRLDQIKIIRLRLG 1141


>gi|427791585|gb|JAA61244.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1099

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 38  SALQSIQNVSSSNPIARE-IRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSS 96
           SA+Q +   + +N   R+ + +L D  K   ++ F W+PSHVG++GNE AD LA EALS 
Sbjct: 900 SAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEALSR 959

Query: 97  NSPPVNTIPINDF--KRFFKSKILTTWNT 123
              P    P N    K+  +S   + WN+
Sbjct: 960 Q--PTIRAPTNQQLPKQTIQSHFRSLWNS 986


>gi|427780027|gb|JAA55465.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 859

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 38  SALQSIQNVSSSNPIARE-IRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSS 96
           SA+Q +   + +N   R+ + +L D  K   ++ F W+PSHVG++GNE AD LA EALS 
Sbjct: 657 SAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEALSR 716

Query: 97  NSPPVNTIPINDF--KRFFKSKILTTWNT 123
              P    P N    K+  +S   + WN+
Sbjct: 717 Q--PTIRAPTNQQLPKQTIQSHFRSLWNS 743


>gi|443734398|gb|ELU18400.1| hypothetical protein CAPTEDRAFT_213104 [Capitella teleta]
          Length = 330

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 4/66 (6%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLD--KNKHVFSLHFTWVPSHVGIAGNEEADRLAKE 92
           +SLS L+++QN SSS  I+ +I+  L+   N +V  + F W+PSH GI GNE AD LAK 
Sbjct: 216 DSLSVLEAMQNTSSSTVIS-DIQVALNVAANSNV-DVSFLWIPSHCGIQGNEAADALAKA 273

Query: 93  ALSSNS 98
           +LSS S
Sbjct: 274 SLSSQS 279


>gi|950316|gb|AAA74495.1| unknown protein [Drosophila teissieri]
          Length = 1234

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 22/141 (15%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            +SLSA+ SI+N ++++     IR+L+ +      +   W+P H GI GNE AD+ AK  L
Sbjct: 1009 DSLSAIDSIKNPNNNSFYPNRIRSLITQ--LAPKIKIMWIPGHSGIIGNELADQAAK--L 1064

Query: 95   SSNSPPVNTIPIN--DFKRFFKSKILT-------TWNTEWANLADNKLRQ---IKEENRP 142
            +SN P + T  IN  D KR  K+++ T         N  + +L  N       +K+ ++ 
Sbjct: 1065 ASNMPLIVTPNINNTDIKRHLKAELATKQKENIINCNQWYQSLNTNNTHTCDYLKQTHQN 1124

Query: 143  WNPPFSMSRKEQVSITRLRIG 163
            W      +R +Q+ I RLR+G
Sbjct: 1125 W------TRLDQIKIIRLRLG 1139


>gi|154278122|ref|XP_001539883.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413468|gb|EDN08851.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 765

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 20  GTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVP 75
           GT    +   Y    +S +AL++I N SS     + ++N+L   K + S    L   WVP
Sbjct: 517 GTPTPHQRHTYTILSDSRTALRAIAN-SSKQVGGQIVQNILHTTKELRSIGVDLCLQWVP 575

Query: 76  SHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LR 134
            H GI GNE AD+LAK++++ N       P +  +   ++     W  EW++ A    LR
Sbjct: 576 GHSGIKGNEMADQLAKQSINPNPTRGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLR 635

Query: 135 QI 136
           +I
Sbjct: 636 KI 637


>gi|154274438|ref|XP_001538070.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414510|gb|EDN09872.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 398

 Score = 53.5 bits (127), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    +L   W P H+
Sbjct: 160 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NLGLKWAPGHM 214

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 215 GIGGNEEADRLAKRAVSSTAAPAYGL 240


>gi|427781947|gb|JAA56425.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 455

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 29  VYLTPDNSLSALQSIQNVSSSNPIAREIRNLL-DKNKHVFSLHFTWVPSHVGIAGNEEAD 87
           V+     +L  L S     S   +  EIR +L +  +    + F W+PSH GI+GN+ AD
Sbjct: 227 VFCDSKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLAD 286

Query: 88  RLAKEALSSNSPPVNTIPIN--DFKRFF----KSKILTTWNTEWANLADNKLRQIKEENR 141
             A+EA    S  + +IP++  D  R+     ++  L  W T  +   D +L  +    R
Sbjct: 287 EAAREAHGETS--LVSIPLSRIDAARYLSKLAQNMTLQMWRT--SQFTDQRLYSLDPSLR 342

Query: 142 PWNPPFSMSRKEQVSITRLRIGPCISHGSPPMLEL 176
               P  +SR+E   + RLR+G   ++     +E+
Sbjct: 343 LRLLP-GLSREEDTVLCRLRLGVAFTNAYSFKIEM 376


>gi|83776064|dbj|BAE66183.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1301

 Score = 53.1 bits (126), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 12   IYYQVDLT-GTAEKSECQVYLTPD------NSLSALQSIQNV--SSSNPIAREIRNLLDK 62
            IYY + L    A+K++     T        +S+SALQ+I N    S   I + I     +
Sbjct: 1023 IYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGE 1082

Query: 63   NK-HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTW 121
             K     L   WVP H G  GNE ADRLAKEA+           ++  K + + +I   W
Sbjct: 1083 LKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGYIRDRISKEW 1142

Query: 122  NTEW-ANLADNKLRQIKE---ENRPWNPPFSMSRKEQVSITRLRIG 163
              EW  +     LR+I      +R      S+ R     +T+LR G
Sbjct: 1143 EQEWRTSKKGGHLRKIDRTLPSSRTRRLYGSLPRNRAYLLTQLRTG 1188


>gi|427780533|gb|JAA55718.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 380

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 12/155 (7%)

Query: 29  VYLTPDNSLSALQSIQNVSSSNPIAREIRNLL-DKNKHVFSLHFTWVPSHVGIAGNEEAD 87
           V+     +L  L S     S   +  EIR +L +  +    + F W+PSH GI+GN+ AD
Sbjct: 227 VFCDSKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLAD 286

Query: 88  RLAKEALSSNSPPVNTIPIN--DFKRFF----KSKILTTWNTEWANLADNKLRQIKEENR 141
             A+EA    S  + +IP++  D  R+     ++  L  W T  +   D +L  +    R
Sbjct: 287 EAAREAHGETS--LVSIPLSRIDAARYLSKLAQNMTLQMWRT--SQFTDQRLYSLDPSLR 342

Query: 142 PWNPPFSMSRKEQVSITRLRIGPCISHGSPPMLEL 176
               P  +SR+E   + RLR+G   ++     +E+
Sbjct: 343 LRLLP-GLSREEDTVLCRLRLGVAFTNAYSFKIEM 376


>gi|443723447|gb|ELU11866.1| hypothetical protein CAPTEDRAFT_187673 [Capitella teleta]
          Length = 225

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 30  YLTPDNSLSALQSIQNVSSSNP----IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           ++   ++LSA+ +I  +   +P    +   I+++  + K V    F W P HVGI GNE 
Sbjct: 134 FVICSDALSAIMAIHGMDVRHPYVLKVLYAIKSIYQQEKIVV---FMWCPPHVGIPGNEM 190

Query: 86  ADRLAKEALSSNSPPVNTIPINDFKRFFKSKI 117
           AD LAKEALSS +    T+  +D +   K  I
Sbjct: 191 ADTLAKEALSSTNLAELTVRASDLRCLIKKYI 222


>gi|317159440|ref|XP_001827316.2| reverse transcriptase [Aspergillus oryzae RIB40]
          Length = 1607

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 12   IYYQVDLT-GTAEKSECQVYLTPD------NSLSALQSIQNV--SSSNPIAREIRNLLDK 62
            IYY + L    A+K++     T        +S+SALQ+I N    S   I + I     +
Sbjct: 1329 IYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGE 1388

Query: 63   NK-HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTW 121
             K     L   WVP H G  GNE ADRLAKEA+           ++  K + + +I   W
Sbjct: 1389 LKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGYIRDRISKEW 1448

Query: 122  NTEW-ANLADNKLRQIKE---ENRPWNPPFSMSRKEQVSITRLRIG 163
              EW  +     LR+I      +R      S+ R     +T+LR G
Sbjct: 1449 EQEWRTSKKGGHLRKIDRTLPSSRTRRLYGSLPRNRAYLLTQLRTG 1494


>gi|317156031|ref|XP_003190671.1| reverse transcriptase [Aspergillus oryzae RIB40]
          Length = 1607

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 71/166 (42%), Gaps = 14/166 (8%)

Query: 12   IYYQVDLT-GTAEKSECQVYLTPD------NSLSALQSIQNV--SSSNPIAREIRNLLDK 62
            IYY + L    A+K++     T        +S+SALQ+I N    S   I + I     +
Sbjct: 1329 IYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGE 1388

Query: 63   NK-HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTW 121
             K     L   WVP H G  GNE ADRLAKEA+           ++  K + + +I   W
Sbjct: 1389 LKARGIPLRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSREKGYIRDRISKEW 1448

Query: 122  NTEW-ANLADNKLRQIKE---ENRPWNPPFSMSRKEQVSITRLRIG 163
              EW  +     LR+I      +R      S+ R     +T+LR G
Sbjct: 1449 EQEWRTSKKGGHLRKIDRTLPSSRTRRLYGSLPRNRAYLLTQLRTG 1494


>gi|427791527|gb|JAA61215.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1298

 Score = 52.8 bits (125), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 12/142 (8%)

Query: 29   VYLTPDNSLSALQSIQNVSSSNPIAREIRNLL-DKNKHVFSLHFTWVPSHVGIAGNEEAD 87
            V+     +L  L S     S   +  EIR +L +  +    + F W+PSH GI+GN+ AD
Sbjct: 1025 VFCDSKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLAD 1084

Query: 88   RLAKEALSSNSPPVNTIPIN--DFKRFF----KSKILTTWNTEWANLADNKLRQIKEENR 141
              A+EA    S  + +IP++  D  R+     ++  L  W T  +   D +L  +    R
Sbjct: 1085 EAAREAHGETS--LVSIPLSRIDAARYLSKLAQNMTLQMWRT--SQFTDQRLYSLDPSLR 1140

Query: 142  PWNPPFSMSRKEQVSITRLRIG 163
                P  +SR+E   + RLR+G
Sbjct: 1141 LRLLP-GLSREEDTVLCRLRLG 1161


>gi|154284203|ref|XP_001542897.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411077|gb|EDN06465.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1672

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 20   GTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVP 75
            GT    +   Y    +S +AL++I N +S     + I+N+L   K + S    L   WVP
Sbjct: 1424 GTPPPHQRHTYTILSDSRTALRAIAN-ASKQVGGQIIQNILHTTKELRSIGVDLCLQWVP 1482

Query: 76   SHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LR 134
             H GI GNE AD+LAK++++ N       P +  +   ++     W  EW++ A    LR
Sbjct: 1483 GHSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLR 1542

Query: 135  QI 136
            +I
Sbjct: 1543 KI 1544


>gi|358376801|dbj|GAA93312.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 316

 Score = 52.8 bits (125), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 14/111 (12%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVPSHVGIAGNEEADRLA 90
           +S+SALQ+I+N ++ +   R IR +L     + +    +   WVP H    GN+E DRLA
Sbjct: 101 DSMSALQAIRNPANKSG-QRIIRAILQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLA 159

Query: 91  KEALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWA-NLADNKLRQI 136
           KEA+     P    P          F + ++L  W  EWA +     LRQI
Sbjct: 160 KEAVG----PRKMHPFKPLLSRENGFIRKRVLNEWKEEWAKSTKGGHLRQI 206


>gi|427779393|gb|JAA55148.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 424

 Score = 52.4 bits (124), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 12/142 (8%)

Query: 29  VYLTPDNSLSALQSIQNVSSSNPIAREIRNLL-DKNKHVFSLHFTWVPSHVGIAGNEEAD 87
           V+     +L  L S     S   +  EIR +L +  +    + F W+PSH GI+GN+ AD
Sbjct: 227 VFCDSKAALQCLSSALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLAD 286

Query: 88  RLAKEALSSNSPPVNTIPIN--DFKRFF----KSKILTTWNTEWANLADNKLRQIKEENR 141
             A+EA    S  + +IP++  D  R+     ++  L  W T  +   D +L  +    R
Sbjct: 287 EAAREAHGETS--LVSIPLSRIDAARYLSKLAQNMTLQMWRT--SQFTDQRLYSLDPSLR 342

Query: 142 PWNPPFSMSRKEQVSITRLRIG 163
               P  +SR+E   + RLR+G
Sbjct: 343 LRLLP-GLSREEDTVLCRLRLG 363


>gi|357615610|gb|EHJ69750.1| putative pol-like protein [Danaus plexippus]
          Length = 168

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKIL 118
           L D + H   +   WVPSH GI GNE AD+  +     N       P  DF   F   + 
Sbjct: 2   LYDMHIHGKVVQLQWVPSHNGIIGNELADQATRGRADENHSNSLKTPYTDFHHTFTMALK 61

Query: 119 TTWNTEWANLADNKLRQIKEENR-----PW-NPPFSMSRKEQVSITRLRIGPC 165
           + +   W  ++  K        R     PW N     +RK  V+I RLR G C
Sbjct: 62  SLYKEYWKTVSKEKGTWYANIQRAPPAQPWYNKLKQYNRKFIVTINRLRFGHC 114


>gi|242814149|ref|XP_002486313.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218714652|gb|EED14075.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1193

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 12   IYYQVDLT---------GTAEKSECQVYLTPDNSLSALQSIQNV--SSSNPIAREIRNLL 60
            IYY + L           TA + E    L+  +S+SALQ+I N    S   I + +R   
Sbjct: 931  IYYAISLVLKIALENWDTTASQQEPATILS--DSMSALQAISNARNKSGQRIIQAVRQSA 988

Query: 61   DKNK-HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILT 119
             + K     L   WVP H G  GNE ADRLAKEA+  +        ++  K F  ++I  
Sbjct: 989  RELKARGIPLRLQWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSREKGFIHNRIQE 1048

Query: 120  TWNTEWANLADNK-LRQIKE---ENRPWNPPFSMSRKEQVSITRLRIG 163
             W   W    +   LR+I       R      S+ R     +T+LR G
Sbjct: 1049 EWERGWKTSKNGGHLRRIDRNLPAVRTRRMYGSLPRNRAYLLTQLRTG 1096


>gi|154276412|ref|XP_001539051.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414124|gb|EDN09489.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 377

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 20  GTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVP 75
           GT    +   Y    +S +AL++I N +S     + I+N+L   K + S    L   WVP
Sbjct: 129 GTPPPHQRHTYTILSDSRTALRAIAN-ASKQVGGQIIQNILHTTKELRSIGVDLCLQWVP 187

Query: 76  SHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADN-KLR 134
            H GI GNE AD+LAK++++ N       P +  +   ++     W  EW++ A    LR
Sbjct: 188 GHSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLR 247

Query: 135 QI 136
           +I
Sbjct: 248 KI 249


>gi|312376130|gb|EFR23313.1| hypothetical protein AND_13122 [Anopheles darlingi]
          Length = 361

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 12/135 (8%)

Query: 10  EHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSS--NPIAREIRNLLDKNKHVF 67
           E +  +V +   A++   +  L  D+  + +   +N  S   N +A EI  +       F
Sbjct: 215 ETLAIKVAMQHIADRGIRRAVLLTDSQAACMFLRRNRESRVRNAVADEILRM----ARTF 270

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPV---NTIPINDFKRFF---KSKILTTW 121
            +   W+P HV ++GN  AD LA+ ALS         N I I+D  R+F   +S ++  W
Sbjct: 271 QVTIQWIPGHVEVSGNRIADELARTALSEGGADAVLNNDIFIHDAIRYFEERRSALINKW 330

Query: 122 NTEWANLADNKLRQI 136
             E+  L    L+Q+
Sbjct: 331 YQEYVRLKGKSLQQL 345


>gi|154269728|ref|XP_001535793.1| hypothetical protein HCAG_09281 [Ajellomyces capsulatus NAm1]
 gi|150410047|gb|EDN05435.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 360

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 119 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 173

Query: 79  GIAGNEEADRLAKEALSSNSPP---VNTIPINDFKRFFKSKILTTWNTEWANLADNKL 133
           GI GNEEADRLAK A+SS + P   +   PI    R    ++      +W + A  KL
Sbjct: 174 GIEGNEEADRLAKRAVSSTAAPAYGLEATPIVSGVRTVAKQLSQEARRKWWSGACGKL 231


>gi|154283217|ref|XP_001542404.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410584|gb|EDN05972.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 375

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 137 TEDGSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 191

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK+A+SS + P   +
Sbjct: 192 GIEGNEEADRLAKQAVSSTAAPAYGL 217


>gi|154277070|ref|XP_001539380.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414453|gb|EDN09818.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 321

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 144 TGDSSNSQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NIGLKWAPEHM 198

Query: 79  GIAGNEEADRLAKEALSSNSPPV 101
            I GNEEADRLAK+A+SS + PV
Sbjct: 199 KIEGNEEADRLAKQAVSSTAAPV 221


>gi|353244976|emb|CCA76093.1| hypothetical protein PIIN_10093 [Piriformospora indica DSM 11827]
          Length = 1335

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 15/146 (10%)

Query: 29   VYLTPDNSLSALQSI---QNVSSSNPIAREI---RNLLDKNKHVFSLHFTWVPSHVGIAG 82
            +++  DNS SA++SI   +  SS +   R I   R+ L+ N    S+   WVP H GI G
Sbjct: 1102 IFIFADNS-SAVRSIPIARPFSSQDASQRFIEAARSFLEGNPRA-SIMIQWVPGHTGIPG 1159

Query: 83   NEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRP 142
            NE AD +AK A S  +PP     ++++ R  ++K+   W  +W +  D + R    +  P
Sbjct: 1160 NERADEIAKAACSL-APPNPRTTLSNYLRTARNKLSEDWTNQWTS-TDRRSRYAIADRLP 1217

Query: 143  ----WNPPF-SMSRKEQVSITRLRIG 163
                 + PF  + R     +T++R G
Sbjct: 1218 PSTLGSYPFRQLDRATLGLVTQIRTG 1243


>gi|317031412|ref|XP_003188771.1| reverse transcriptase [Aspergillus niger CBS 513.88]
          Length = 1653

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35   NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 1419 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAK 1478

Query: 92   EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
            EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 1479 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 1534

Query: 141  RPWNPPFSMSRKEQVSITRLRIGPC 165
            R +    ++ R     +T++R G C
Sbjct: 1535 RLYG---ALPRNRAYLLTQIRSGHC 1556


>gi|134077855|emb|CAK40096.1| unnamed protein product [Aspergillus niger]
          Length = 1244

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35   NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 1010 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAK 1069

Query: 92   EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
            EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 1070 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 1125

Query: 141  RPWNPPFSMSRKEQVSITRLRIGPC 165
            R +    ++ R     +T++R G C
Sbjct: 1126 RLYG---ALPRNRAYLLTQIRSGHC 1147


>gi|154274221|ref|XP_001537962.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415570|gb|EDN10923.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1671

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 29   VYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVPSHVGIAGNE 84
             Y    +S +AL++I N SS     + ++N+L   K + S    L   WVP H GI GNE
Sbjct: 1432 TYTILSDSRAALRAIAN-SSKQVGGQIVQNILHTTKQLKSIGVDLCLQWVPGHSGIKGNE 1490

Query: 85   EADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LRQI 136
             AD+LAK++++ N       P +  +   ++     W  EW++ A    LR+I
Sbjct: 1491 MADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHLRKI 1543


>gi|317031356|ref|XP_001393251.2| reverse transcriptase [Aspergillus niger CBS 513.88]
          Length = 1677

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35   NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 1456 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAK 1515

Query: 92   EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
            EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 1516 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 1571

Query: 141  RPWNPPFSMSRKEQVSITRLRIGPC 165
            R +    ++ R     +T++R G C
Sbjct: 1572 RLYG---ALPRNRAYLLTQIRSGHC 1593


>gi|134077756|emb|CAK45797.1| unnamed protein product [Aspergillus niger]
          Length = 1536

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35   NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 1302 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAK 1361

Query: 92   EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
            EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 1362 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 1417

Query: 141  RPWNPPFSMSRKEQVSITRLRIGPC 165
            R +    ++ R     +T++R G C
Sbjct: 1418 RLYG---ALPRNRAYLLTQIRSGHC 1439


>gi|307189101|gb|EFN73572.1| hypothetical protein EAG_08495 [Camponotus floridanus]
          Length = 246

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 72  TWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADN 131
            WVPSHVGI GNE AD LA EA           P  D     K K  +  + E   LA +
Sbjct: 99  VWVPSHVGILGNETADLLAGEAARQEESVDYLPPHTDLYSLVKEKYFS--DIEKYLLAQS 156

Query: 132 KLRQIKE-------ENRPWNPPFSMSRKEQVSITRLR 161
           ++R  +          +PW     +SR E  +I R+R
Sbjct: 157 EIRGAQYFSLYPPFARKPWFAGLDLSRAEITTICRIR 193


>gi|242826135|ref|XP_002488580.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218712398|gb|EED11824.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1154

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 69/166 (41%), Gaps = 18/166 (10%)

Query: 12   IYYQVDLT---------GTAEKSECQVYLTPDNSLSALQSIQNV--SSSNPIAREIRNLL 60
            IYY + L           TA + E    L+  +S+SALQ+I N    S   I + +R   
Sbjct: 892  IYYAISLVLKIALENWDTTASQQEPATILS--DSMSALQAISNARNKSGQRIIQAVRQSA 949

Query: 61   DKNK-HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILT 119
             + K     L   WVP H    GNE ADRLAKEA+  +        ++  K F +++I  
Sbjct: 950  RELKARGIPLRLQWVPGHYSDLGNEAADRLAKEAVGLDKEHPFQHLLSREKGFIRNRIQE 1009

Query: 120  TWNTEWANLADNKLRQIKEEN----RPWNPPFSMSRKEQVSITRLR 161
             W   W    +       + N    R W    S+ R     +T+LR
Sbjct: 1010 EWERGWKTSKNGGHLWRIDRNLPAVRTWRMYGSLPRNRAYLLTQLR 1055


>gi|154273212|ref|XP_001537458.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415970|gb|EDN11314.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 265

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 27  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 81

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 82  GIEGNEEADRLAKRAVSSTAAPAYGL 107


>gi|317031342|ref|XP_003188764.1| reverse transcriptase [Aspergillus niger CBS 513.88]
          Length = 1016

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35  NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 782 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAK 841

Query: 92  EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
           EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 842 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 897

Query: 141 RPWNPPFSMSRKEQVSITRLRIGPC 165
           R +    ++ R     +T++R G C
Sbjct: 898 RLYG---ALPRNRAYLLTQIRSGHC 919


>gi|134077781|emb|CAK45821.1| unnamed protein product [Aspergillus niger]
          Length = 1644

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35   NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 1410 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDAADRLAK 1469

Query: 92   EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLADNK-LRQI------KEEN 140
            EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 1470 EA----AIPGKTHPFSPLLSRERAYIRQGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 1525

Query: 141  RPWNPPFSMSRKEQVSITRLRIGPC 165
            R +    ++ R     +T++R G C
Sbjct: 1526 RLYG---ALPRNRAYLLTQIRSGHC 1547


>gi|154284844|ref|XP_001543217.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150406858|gb|EDN02399.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1758

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 3/59 (5%)

Query: 38   SALQSIQN--VSSSNPIAREIRNLLDK-NKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
            +AL+++QN   SS   I R I + L++ N     + F W+P+H GI GNE AD+LAKEA
Sbjct: 1514 AALKALQNPRRSSGQSILRRIMDTLERVNSQGLQVEFYWIPAHQGIEGNELADKLAKEA 1572


>gi|328696858|ref|XP_003240151.1| PREDICTED: hypothetical protein LOC100568880 [Acyrthosiphon pisum]
          Length = 206

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 76  SHVGIAGNEEADRLAKEALSSNSPPVNT--IPINDFKRFFKSKILTTWNTEWANLADNKL 133
           SH  I GNE+ D L KEA +S +  ++       D  R   + I   W+ +W    + KL
Sbjct: 40  SHSNIEGNEKVDCLPKEAANSTNLEISEKYCTYEDTLRCINTAIEEKWSLKWRR-KETKL 98

Query: 134 RQIKEENRPWNPPFSMSRKEQVSITRLRIG 163
            +IK     W    +++RKE+V +TRLRIG
Sbjct: 99  SEIKRTTDRWKNKSNLNRKEEVILTRLRIG 128


>gi|154269790|ref|XP_001535810.1| hypothetical protein HCAG_09260 [Ajellomyces capsulatus NAm1]
 gi|150409831|gb|EDN05270.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 279

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 44  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 98

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 99  GIEGNEEADRLAKRAVSSTAAPAYGL 124


>gi|154277392|ref|XP_001539537.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413122|gb|EDN08505.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 375

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 137 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 191

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 192 GIEGNEEADRLAKRAVSSTAAPAYGL 217


>gi|154270239|ref|XP_001535976.1| hypothetical protein HCAG_09089 [Ajellomyces capsulatus NAm1]
 gi|150410083|gb|EDN05471.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 832

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 20  GTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVP 75
           GT    +   Y    +S +AL++I N SS     + ++N+L   K + S    L   WVP
Sbjct: 584 GTPPPHQHHTYTILSDSHTALRAIAN-SSKQVGGQIVQNILRTTKQLKSIGIDLCLQWVP 642

Query: 76  SHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LR 134
            H GI GNE AD+LAK++++ N       P +  +   ++     W  EW++ A    LR
Sbjct: 643 GHSGIRGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTHEWRDEWSSTAKGTHLR 702

Query: 135 QI 136
           +I
Sbjct: 703 KI 704


>gi|154269949|ref|XP_001535860.1| hypothetical protein HCAG_09207 [Ajellomyces capsulatus NAm1]
 gi|150414478|gb|EDN09841.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 406

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 168 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 222

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 223 GIEGNEEADRLAKRAVSSTAAPAYGL 248


>gi|154271390|ref|XP_001536548.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409218|gb|EDN04668.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 543

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 305 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 359

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 360 GIEGNEEADRLAKRAVSSTAAPAYGL 385


>gi|154287246|ref|XP_001544418.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408059|gb|EDN03600.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 362

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 124 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 178

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 179 GIEGNEEADRLAKRAVSSTAAPAYGL 204


>gi|154275176|ref|XP_001538439.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150414879|gb|EDN10241.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 433

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 195 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 249

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 250 GIEGNEEADRLAKRAVSSTAAPAYGL 275


>gi|427792791|gb|JAA61847.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 650

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 39  ALQSIQNV----SSSNPIAREIRNLL---DKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           ALQ I N     ++ +P+  EI  +L    ++ H  +L   W+PSH GIAGNE+AD  AK
Sbjct: 428 ALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQ--WIPSHCGIAGNEQADAEAK 485

Query: 92  EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIK-EENRPWNPPFSMS 150
            A ++           D        I T+    W +    + R  + +  R +  P  + 
Sbjct: 486 MAHTTGEVVSIHFSRYDINALLSKAIKTSMTRLWNDPDYRQERLYRLDSGRAFRLPCRLR 545

Query: 151 RKEQVSITRLRIG 163
           R ++  + RLR+G
Sbjct: 546 RDQETLLHRLRLG 558


>gi|134080425|emb|CAK41174.1| unnamed protein product [Aspergillus niger]
          Length = 1288

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 35   NSLSALQSIQNV--SSSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S+SALQ I+N    S   I + I ++  +       L   WVP H G  GNE ADRLAK
Sbjct: 1040 DSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAK 1099

Query: 92   EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEW-ANLADNKLRQIKE---ENRPWNPPF 147
              +           ++  KR+ +  I   W+ EW A+     LR+I      NR      
Sbjct: 1100 ATVGGEKRHPFRHLLSREKRYIRRNISDEWHQEWRASRNGGHLRRIDRALPANRTRRLYG 1159

Query: 148  SMSRKEQVSITRLRIG 163
            S+ R     +T+LR G
Sbjct: 1160 SLPRNRAYLLTQLRTG 1175


>gi|154283279|ref|XP_001542435.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410615|gb|EDN06003.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 351

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 106 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 160

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 161 GIEGNEEADRLAKRAVSSTAAPAYGL 186


>gi|242826474|ref|XP_002488649.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218712467|gb|EED11893.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1747

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 68   SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
            S+   WVP H  I GNE AD  AK+  +S SPP +       KR  K++ L+   + W  
Sbjct: 1563 SVRIRWVPGHAKIPGNEAADLAAKKGAASTSPPPHNFSYASLKRHAKAQYLSAAQSHWQK 1622

Query: 128  LADNKLRQIKEENRPWNPP-FSMSRKEQVSITRLRIG 163
            +A    + ++    P  P    ++R +   I   R G
Sbjct: 1623 VAPQTYQDLEITTSPKRPKELQLNRLDLSHIIAARTG 1659


>gi|154287174|ref|XP_001544382.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408023|gb|EDN03564.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 433

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 195 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 249

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 250 GIEGNEEADRLAKRAVSSTAAPAYGL 275


>gi|154282433|ref|XP_001542012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410192|gb|EDN05580.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1357

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I++   +SSN        LL ++    ++   W P H+
Sbjct: 1119 TEDSSNPQIWLCLDNT-SVIWGIRDSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1173

Query: 79   GIAGNEEADRLAKEALSSNSPPV 101
            GI GNEEADRLAK A+SS + P 
Sbjct: 1174 GIEGNEEADRLAKRAVSSTAAPA 1196


>gi|317033408|ref|XP_001395701.2| reverse transcriptase [Aspergillus niger CBS 513.88]
          Length = 1618

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 71/168 (42%), Gaps = 18/168 (10%)

Query: 12   IYYQVDLT---------GTAEKSECQVYLTPDNSLSALQSIQNV--SSSNPIAREI-RNL 59
            IYY + L            A  +E    L+  +S+SALQ I+N    S   I + I ++ 
Sbjct: 1340 IYYAIGLVFQLAQKNQRSRATDAEPATILS--DSMSALQVIKNSWNKSGQRIIQAIHQSA 1397

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILT 119
             +       L   WVP H G  GNE ADRLAK  +           ++  KR+ +  I  
Sbjct: 1398 GELRARGIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSREKRYIRRNISD 1457

Query: 120  TWNTEW-ANLADNKLRQIKE---ENRPWNPPFSMSRKEQVSITRLRIG 163
             W+ EW A+     LR+I      NR      S+ R     +T+LR G
Sbjct: 1458 EWHQEWRASRNGGHLRRIDRALPANRTRRLYGSLPRNRAYLLTQLRTG 1505


>gi|154273178|ref|XP_001537441.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415953|gb|EDN11297.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 529

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 291 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 345

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS + P   +
Sbjct: 346 GIEGNEEADRLAKRAVSSTAAPAYGL 371


>gi|358376045|dbj|GAA92616.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 861

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 21/145 (14%)

Query: 35  NSLSALQSIQNVSSSNP---IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S SAL +IQ   S +    I   ++   +   H  ++   WVP H  I GN+ ADRLAK
Sbjct: 629 DSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAK 688

Query: 92  EALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEWANLAD-NKLRQI------KEEN 140
           EA    + P  T P +      + + +  ILT W  EW    D   LR+I      K   
Sbjct: 689 EA----AIPGKTHPFSPLLSRERAYIRHGILTQWEKEWKESRDGGHLRKIDNTLPAKYTR 744

Query: 141 RPWNPPFSMSRKEQVSITRLRIGPC 165
           R +    ++ R     +T++R G C
Sbjct: 745 RLYG---ALPRNRAYLLTQIRSGHC 766


>gi|154272642|ref|XP_001537173.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415685|gb|EDN11029.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 360

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 122 TEDSSNPQIWLCLDNT-SVIWGIRGGAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 176

Query: 79  GIAGNEEADRLAKEALSSNSPPV 101
           GI GNEEADRLAK A+SS + P 
Sbjct: 177 GIEGNEEADRLAKRAVSSTAAPA 199


>gi|154270264|ref|XP_001535988.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410059|gb|EDN05447.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 254

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 19  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 73

Query: 79  GIAGNEEADRLAKEALSSNSPPV 101
           GI GNEEADRLAK A+SS + P 
Sbjct: 74  GIEGNEEADRLAKRAVSSTAAPA 96


>gi|358376822|dbj|GAA93326.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 815

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 35  NSLSALQSIQNV--SSSNPIAREIRNLLDKNK-HVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S+SALQ I+N    S   I + I +   + K     L   WVP H G  GNE ADRLAK
Sbjct: 588 DSMSALQVIKNSWNKSGQCIIQAIHHSAGELKARGIPLRLQWVPGHCGDPGNEAADRLAK 647

Query: 92  EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LRQIKE---ENRPWNPPF 147
           +A+  +        ++  K + + KI   W  EW    +   LR+I      +R      
Sbjct: 648 DAVGIDKKHPFKHLLSREKGYIRRKIYQEWEQEWRTSKNGGHLRRIDRGLPSSRSRRLYG 707

Query: 148 SMSRKEQVSITRLRIG 163
           S+ R     +T+LR G
Sbjct: 708 SLPRNRAYLLTQLRTG 723


>gi|427782325|gb|JAA56614.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 1173

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 39   ALQSIQNV----SSSNPIAREIRNLL---DKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            ALQ I N     ++ +P+  EI  +L    ++ H  +L   W+PSH GIAGNE+AD  AK
Sbjct: 951  ALQLIGNYMKQGTAYSPLVYEIMIMLTEASQSGHTITLQ--WIPSHCGIAGNEQADAEAK 1008

Query: 92   EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIK-EENRPWNPPFSMS 150
             A ++           D        I T+    W +    + R  + +  R +  P  + 
Sbjct: 1009 MAHTTGEVVSIHFSRYDINALLSKAIKTSMTRLWNDPDYRQERLYRLDSGRAFRLPCRLR 1068

Query: 151  RKEQVSITRLRIG 163
            R ++  + RLR+G
Sbjct: 1069 RDQETLLHRLRLG 1081


>gi|154270408|ref|XP_001536059.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409986|gb|EDN05374.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1597

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    +L   W P H+
Sbjct: 1411 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NLGLKWAPGHM 1465

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1466 GIEGNEEADRLAKRAVSSTAAP 1487


>gi|427783069|gb|JAA56986.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 481

 Score = 50.4 bits (119), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 18/103 (17%)

Query: 34  DNSLSALQSIQNVSSSNP---IAREIRNLL----DKNKHVFSLHFTWVPSHVGIAGNEEA 86
            +S +ALQS+ +     P   +  E+R LL    +K  HV    F W+PSH G+ GNE A
Sbjct: 255 SDSKAALQSLLSALRHGPYEQLVFEVRYLLHTSIEKGHHV---KFQWLPSHCGVIGNEHA 311

Query: 87  DRLAKEALSSNSPPVNTIPINDFK-----RFFKSKI-LTTWNT 123
           D  A+ AL  ++  + TIP++        R    KI  +TWNT
Sbjct: 312 DNAARSALQGDT--LETIPLSRTDAARQLRVVAQKITFSTWNT 352


>gi|393226248|gb|EJD34041.1| hypothetical protein AURDEDRAFT_76517 [Auricularia delicata
           TFB-10046 SS5]
          Length = 185

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 60/148 (40%), Gaps = 32/148 (21%)

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPIND---------FK 110
           L K +  F L   WVP H G+ GNE AD  AK+A +  + P+ T  IN            
Sbjct: 39  LHKRRPGFRLRLFWVPGHEGVDGNELADLHAKKAAAREASPLATCTINGEPLPISAAALC 98

Query: 111 RFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPF-----SMSRKEQVSITRL----- 160
              K   L  W   WA+ +   LR  K ++ P +         + R + V +T+L     
Sbjct: 99  ATCKQDSLRQWQCRWAD-SPRGLRYAKFDSAPPSAKVPRMYHRLCRAQAVVLTQLCTGHV 157

Query: 161 -------RIGP-----CISHGSPPMLEL 176
                  RIG      C+  G P ++EL
Sbjct: 158 ALNQYLHRIGALDSLMCVRCGEPELVEL 185


>gi|154272339|ref|XP_001537022.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409009|gb|EDN04465.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 510

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
           I+  ++L   +++    ++     +L ALQ+ +  SS   I R I + LD+ +     + 
Sbjct: 242 IHMGLNLILASDRRRAAIFTDNQAALKALQNPRR-SSGQSILRRIIDALDRVRAQGLQVE 300

Query: 71  FTWVPSHVGIAGNEEADRLAKEA 93
           F W+P+H GI GNE AD LAKEA
Sbjct: 301 FYWIPAHQGIEGNELADNLAKEA 323


>gi|154270402|ref|XP_001536056.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409983|gb|EDN05371.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1585

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    +L   W P H+
Sbjct: 1311 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NLGLKWAPGHM 1365

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1366 GIEGNEEADRLAKRAVSSTAAP 1387


>gi|154284199|ref|XP_001542895.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411075|gb|EDN06463.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1776

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12   IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
            I+  ++L   +++    ++     +L ALQ+ +  SS   I R I + LD+ +     + 
Sbjct: 1508 IHMGLNLILASDRRRAAIFTDNQAALKALQNPRR-SSGQSILRRIIDALDRVRAQGLQVE 1566

Query: 71   FTWVPSHVGIAGNEEADRLAKEA 93
            F W+P+H GI GNE AD LAKEA
Sbjct: 1567 FYWIPAHQGIEGNELADNLAKEA 1589


>gi|154284596|ref|XP_001543093.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150406734|gb|EDN02275.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 808

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL   +H  SL   W P H+
Sbjct: 567 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELL--RQHNVSL--KWAPGHM 621

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 622 GIEGNEEADRLAKRAVSSTAAP 643


>gi|255940952|ref|XP_002561245.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585868|emb|CAP93597.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1513

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDKNKHV----FSLHFTWVPSHVGIAGNEEADRLA 90
            +S SALQ+IQNV + +   R +  +L     V      L   W+P H    GN+ ADRLA
Sbjct: 1281 DSKSALQAIQNVKNKSG-QRIVHAILQAATEVQGENIKLRLQWMPGHCENRGNDTADRLA 1339

Query: 91   KEALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEW 125
            KEA    + P  T P          F +SKI   W  EW
Sbjct: 1340 KEA----AQPGKTHPFRPLLSRENAFVRSKIYAQWGQEW 1374


>gi|255931687|ref|XP_002557400.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582019|emb|CAP80183.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 334

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 21/145 (14%)

Query: 35  NSLSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S+SALQ+IQ   N S    I   ++  ++   H  ++   W+P H    GN+ ADRLAK
Sbjct: 92  DSMSALQAIQTPGNKSGQRIIHAILQAAINSKTHGVTIRLQWIPGHCAAPGNDSADRLAK 151

Query: 92  EALSSNSPPVNTIP----INDFKRFFKSKILTTW-NTEWANLADNKLRQI------KEEN 140
           EA    + P  T P    ++  K F +  I   W      +     LR I      K   
Sbjct: 152 EA----AIPGKTHPFCPLLSREKAFVRKNIYDQWEKEXKESKEGGNLRTIDNALPAKYTR 207

Query: 141 RPWNPPFSMSRKEQVSITRLRIGPC 165
           R + P   ++R     +T+LR G C
Sbjct: 208 RLYGP---LTRNRAHLLTQLRTGHC 229


>gi|154272341|ref|XP_001537023.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409010|gb|EDN04466.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1765

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12   IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
            I+  ++L   +++    ++     +L ALQ+ +  SS   I R I + LD+ +     + 
Sbjct: 1497 IHMGLNLILASDRRRAAIFTDNQAALKALQNPRR-SSGQSILRRIIDALDRVRAQGLQVE 1555

Query: 71   FTWVPSHVGIAGNEEADRLAKEA 93
            F W+P+H GI GNE AD LAKEA
Sbjct: 1556 FYWIPAHQGIEGNELADNLAKEA 1578


>gi|154280491|ref|XP_001541058.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411237|gb|EDN06625.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1765

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12   IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
            I+  ++L   +++    ++     +L ALQ+ +  SS   I R I + LD+ +     + 
Sbjct: 1497 IHMGLNLILASDRRRAAIFTDNQAALKALQNPRR-SSGQSILRRIIDALDRVRSQGLQVE 1555

Query: 71   FTWVPSHVGIAGNEEADRLAKEA 93
            F W+P+H GI GNE AD LAKEA
Sbjct: 1556 FYWIPAHQGIEGNELADNLAKEA 1578


>gi|154274349|ref|XP_001538026.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415634|gb|EDN10987.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1838

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 12   IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
            I   ++L  T+++    ++     +L ALQ+ +  SS   I R I + L++ +     + 
Sbjct: 1573 ILMGLNLILTSDRRRAAIFTDNQAALRALQNPRR-SSGQSILRRIIDALERVRSQGLQVE 1631

Query: 71   FTWVPSHVGIAGNEEADRLAKEA 93
            F W+P+H GI GNE AD+LAKEA
Sbjct: 1632 FYWIPAHQGIEGNELADKLAKEA 1654


>gi|154273424|ref|XP_001537564.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150416076|gb|EDN11420.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1153

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 915 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 969

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 970 GIEGNEEADRLAKRAVSSTAAP 991


>gi|154287968|ref|XP_001544779.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408420|gb|EDN03961.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 787

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 549 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 603

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 604 GIEGNEEADRLAKRAVSSTAAP 625


>gi|154283453|ref|XP_001542522.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410702|gb|EDN06090.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1683

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12   IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
            I+  ++L   +++    ++     +L ALQ+ +  SS   I R I + LD+ +     + 
Sbjct: 1483 IHMGLNLILASDRRRAAIFTDNQAALKALQNPRR-SSGQSILRRIIDALDRVRSQGLQVE 1541

Query: 71   FTWVPSHVGIAGNEEADRLAKEA 93
            F W+P+H GI GNE AD LAKEA
Sbjct: 1542 FYWIPAHQGIEGNELADNLAKEA 1564


>gi|427781821|gb|JAA56362.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 1134

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 65   HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDF--KRFFKSKILTTWN 122
            H+ +L   WVP H GI  NE AD LAK +L+   P +  +P+  F     F++  L+   
Sbjct: 937  HLRNLRLIWVPGHRGIVLNEVADTLAKASLA--GPVLALLPVTAFVAAARFRTYALSVLT 994

Query: 123  TEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLR 161
               A+++D +  Q      PW+  +  +R  +V +TRLR
Sbjct: 995  PSLASISDFQHLQF-----PWSRKWCGTRATEVVMTRLR 1028


>gi|154270331|ref|XP_001536021.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410035|gb|EDN05423.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 590

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 461 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 515

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 516 GIEGNEEADRLAKRAVSSTAAP 537


>gi|154271472|ref|XP_001536589.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409259|gb|EDN04709.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1184

 Score = 50.1 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 946  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1000

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1001 GIEGNEEADRLAKRAVSSTAAP 1022


>gi|154282135|ref|XP_001541880.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412059|gb|EDN07447.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 844

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 606 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 660

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 661 GIEGNEEADRLAKRAVSSTAAP 682


>gi|154281239|ref|XP_001541432.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411611|gb|EDN06999.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1183

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 945  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 999

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1000 GIEGNEEADRLAKRAVSSTAAP 1021


>gi|154269689|ref|XP_001535782.1| hypothetical protein HCAG_09292 [Ajellomyces capsulatus NAm1]
 gi|150410077|gb|EDN05465.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 279

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 194 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 248

Query: 79  GIAGNEEADRLAKEALSSNSPPV 101
           GI GNEEADRLAK A+SS + P 
Sbjct: 249 GIEGNEEADRLAKRAVSSTAAPA 271


>gi|154287834|ref|XP_001544712.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408353|gb|EDN03894.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1110

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 872 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 926

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 927 GIEGNEEADRLAKRAVSSTAAP 948


>gi|170040414|ref|XP_001847995.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167863953|gb|EDS27336.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 362

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 7/111 (6%)

Query: 40  LQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSP 99
           L+  +N    N +A +I     +N+        W+P HV + GNE AD LA++ALS+   
Sbjct: 247 LKKSRNSRMRNSVANDILEKAKRNRTTIQ----WIPGHVQVDGNETADGLARQALSAEFV 302

Query: 100 PVNTIPINDFKRFFKSKI---LTTWNTEWANLADNKLRQIKEENRPWNPPF 147
             N I ++D   +F+ +    + +W  ++       L+Q+ E +     P+
Sbjct: 303 MENDIFVHDAISYFEERQASKINSWYQDYVRQKGKTLKQLIESDSEEEDPY 353


>gi|427798873|gb|JAA64888.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1158

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)

Query: 65   HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDF--KRFFKSKILTTWN 122
            H+ +L   WVP H GI  NE AD LAK +L+   P +  +P+  F     F++  L+   
Sbjct: 1017 HLRNLRLIWVPGHRGIVLNEVADTLAKASLA--GPVLALLPVTAFVAAARFRTYALSVLT 1074

Query: 123  TEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLR 161
               A+++D +  Q      PW+  +  +R  +V +TRLR
Sbjct: 1075 PSLASISDFQHLQF-----PWSRKWCGTRATEVVMTRLR 1108


>gi|353246588|emb|CCA76851.1| hypothetical protein PIIN_10836 [Piriformospora indica DSM 11827]
          Length = 431

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 46/199 (23%)

Query: 10  EHIYYQVDLTGTAEKSEC---------QVYLTPDNSLSALQSIQNVSS--SNPIAREIRN 58
           EH  ++ +L G A   +           + ++ DN  +A+Q ++NVS+     I R+I  
Sbjct: 140 EHTVHEGELVGIALGVQLAKMERIVIPHIKISLDNQ-AAIQGMENVSAKAGQHIIRKIHR 198

Query: 59  LLDK----NKHVFSL----------------HFTWVPSHVGIAGNEEADRLAKEALSSNS 98
            +DK     KH   L                  TWVP H GI GN+ AD  AK+A++  S
Sbjct: 199 AIDKLRNDQKHRRELVEASDNETRINRSTQITLTWVPGHEGIEGNKAADEEAKKAITDGS 258

Query: 99  PPVNTIP----------INDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFS 148
               T+P          I+  ++  K     + + +W + A     +  +E  P N    
Sbjct: 259 STAATLPPWMKDTLLQNISALRQELKLAARKSAHNKWKSSARYDRTRPIDETMPSNKYLQ 318

Query: 149 MS----RKEQVSITRLRIG 163
           ++    R E V++ +LR G
Sbjct: 319 ITDELMRAEAVALIQLRTG 337


>gi|358376676|dbj|GAA93209.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 378

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 7/136 (5%)

Query: 35  NSLSALQSIQNV--SSSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S+SALQ I+N    S   I + I ++  +       L   WVP H G  GNE ADRLAK
Sbjct: 130 DSMSALQVIKNSWNKSGQRIIQAIHQSAGELRARGIPLQLQWVPGHCGNPGNEAADRLAK 189

Query: 92  EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEW-ANLADNKLRQIKE---ENRPWNPPF 147
             +           ++  KR+ +  I   W+ EW A+     LR I      NR      
Sbjct: 190 ATVGVKKRHPFRHLLSREKRYIRKNISDEWHQEWRASRNGGHLRCIDRALPANRTRRLYG 249

Query: 148 SMSRKEQVSITRLRIG 163
           S+ R +   +T+LR G
Sbjct: 250 SLPRNQAYLLTQLRTG 265


>gi|154270335|ref|XP_001536023.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150410037|gb|EDN05425.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 914

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 31/164 (18%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 676 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 730

Query: 79  GIAGNEEADRLAKEALSSNSPP---VNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQ 135
           GI GNEEADRLAK A+SS + P   +   PI    R    ++      +W + A  KL  
Sbjct: 731 GIEGNEEADRLAKRAVSSTAAPAYGLEATPIVSGVRTVAKQLSQEARRKWWSGACGKLSD 790

Query: 136 IKEENRPWNPPFSMSRKEQVSITRLRIGPCISH--GSPPMLELP 177
                  W   +S SR            P + +   +PP L +P
Sbjct: 791 -------WYRGWSFSR------------PTVEYQVKAPPELTMP 815


>gi|154276786|ref|XP_001539238.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414311|gb|EDN09676.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 935

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 697 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 751

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 752 GIEGNEEADRLAKRAVSSTAAP 773


>gi|154276844|ref|XP_001539267.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414340|gb|EDN09705.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 919

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 681 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 735

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 736 GIEGNEEADRLAKRAVSSTAAP 757


>gi|154274369|ref|XP_001538036.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415644|gb|EDN10997.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1174

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 936  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 990

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 991  GIEGNEEADRLAKRAVSSTAAP 1012


>gi|154271959|ref|XP_001536832.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408819|gb|EDN04275.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1338

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1100 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1154

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1155 GIEGNEEADRLAKRAVSSTAAP 1176


>gi|154281205|ref|XP_001541415.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411594|gb|EDN06982.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 624

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 379 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 433

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 434 GIEGNEEADRLAKRAVSSTAAP 455


>gi|358376084|dbj|GAA92654.1| transposon I factor [Aspergillus kawachii IFO 4308]
          Length = 231

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 37  LSALQSIQ---NVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKE- 92
           +SAL +IQ   + S    I   ++   +   H  ++   WVP H  I GN+ ADRLAKE 
Sbjct: 1   MSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKEA 60

Query: 93  ALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LRQI 136
           A+   + P + + ++  + + +  ILT W  EW    D+  LR+I
Sbjct: 61  AIFGKTHPFSPL-LSRERAYIRQGILTQWEQEWKESRDSGHLRKI 104


>gi|270002674|gb|EEZ99121.1| hypothetical protein TcasGA2_TC005227 [Tribolium castaneum]
          Length = 321

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)

Query: 42  SIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPV 101
           +I +V+      ++ +N+    K V   H  WVP+H GI  NE AD++AK+      P  
Sbjct: 130 AINDVTRDKNHIKKFKNIQTAEKAV---HLIWVPAHYGIEENEHADQIAKQVPEDQEPER 186

Query: 102 NTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLR 161
                 D ++  ++K    +   W N +  KLR+     + W    ++ R E+V+I RLR
Sbjct: 187 LYPVYTDVQQTIRTKHANLFQQHW-NQSTAKLREAYPNIKKWASS-NLKRGEEVTINRLR 244

Query: 162 I 162
           +
Sbjct: 245 L 245


>gi|154282145|ref|XP_001541885.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412064|gb|EDN07452.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1278

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1032 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1086

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1087 GIEGNEEADRLAKRAVSSTAAP 1108


>gi|154280733|ref|XP_001541179.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411358|gb|EDN06746.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 650

 Score = 49.7 bits (117), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 412 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 466

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 467 GIEGNEEADRLAKRAVSSTAAP 488


>gi|154279334|ref|XP_001540480.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412423|gb|EDN07810.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 666

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 428 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 482

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 483 GIEGNEEADRLAKRAVSSTAAP 504


>gi|326480183|gb|EGE04193.1| hypothetical protein TEQG_03224 [Trichophyton equinum CBS 127.97]
          Length = 210

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 53 AREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALS 95
          A  IR L +  +  + + F W+P+HVG+ GNEEAD+LAKEA S
Sbjct: 6  AEAIRELDELRRLGWEVQFRWIPAHVGVPGNEEADQLAKEAAS 48


>gi|154287920|ref|XP_001544755.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150408396|gb|EDN03937.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 787

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  ++    +SSN        LL ++    ++   W P H+
Sbjct: 549 TEDSSNPQIWLCLDNT-SVIWGVRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 603

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 604 GIEGNEEADRLAKRAVSSTAAP 625


>gi|154275794|ref|XP_001538742.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150413815|gb|EDN09180.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1621

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1383 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1437

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1438 GIEGNEEADRLAKRAVSSTAAP 1459


>gi|154283763|ref|XP_001542677.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410857|gb|EDN06245.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 709

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 464 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 518

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 519 GIEGNEEADRLAKRAVSSTAAP 540


>gi|357621647|gb|EHJ73416.1| putative pol-like protein [Danaus plexippus]
          Length = 1133

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 35   NSLSALQSIQN---VSSSN-PIAREIRNLLDKNKHV-FSLHFTWVPSHVGIAGNEEADRL 89
            +S S LQ+I     +S  N P   +I+++L + +     +   W+PSH GI GNE  D  
Sbjct: 927  DSKSCLQAIARNPFISKHNYPYILKIKDILFRCQSSNIQVRLAWIPSHSGIHGNETVDYY 986

Query: 90   AKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEEN-----RPWN 144
            AK+A ++       +  ND     K +  ++W   W   + +K +   +       RPW 
Sbjct: 987  AKDATNTGCMDHFGVYPNDLIPIAKQRFFSSWTQYWLKTSRSKGKYYADVQSLIPFRPWF 1046

Query: 145  PPF-SMSRKEQVSITRLRIG 163
              F ++ ++    I RLR+G
Sbjct: 1047 CNFKNLHKRVSSIICRLRLG 1066


>gi|154277654|ref|XP_001539665.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150413250|gb|EDN08633.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1489

 Score = 49.3 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1244 TEDGSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1298

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK+A+SS + P
Sbjct: 1299 GIEGNEEADRLAKQAVSSTAAP 1320


>gi|154271392|ref|XP_001536549.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409219|gb|EDN04669.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1276

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1002 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1056

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1057 GIEGNEEADRLAKRAVSSTAAP 1078


>gi|154277650|ref|XP_001539663.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413248|gb|EDN08631.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1411

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1173 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1227

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1228 GIEGNEEADRLAKRAVSSTAAP 1249


>gi|169626528|ref|XP_001806663.1| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
 gi|160706113|gb|EAT76061.2| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
          Length = 602

 Score = 49.3 bits (116), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 52  IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL-----SSNSPPVNTIP- 105
           IAR+++ L DK + V      W+P+HVGI GNE AD  AKEA          PP    P 
Sbjct: 393 IARQVQRLQDKGRPV---TVRWIPAHVGIPGNEAADIAAKEATGWRADGRRQPPAEAPPK 449

Query: 106 ----INDFKRFFKSKILTTWNTEW 125
                +  +R+ K++   TW   W
Sbjct: 450 LFPLKSTLRRWCKTQAERTWADSW 473


>gi|154281309|ref|XP_001541467.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411646|gb|EDN07034.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1683

 Score = 49.3 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21   TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
            T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 1445 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 1499

Query: 79   GIAGNEEADRLAKEALSSNSPP 100
            GI GNEEADRLAK A+SS + P
Sbjct: 1500 GIEGNEEADRLAKRAVSSTAAP 1521


>gi|154274337|ref|XP_001538020.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415628|gb|EDN10981.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1128

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 890 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 944

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A SS + P
Sbjct: 945 GIEGNEEADRLAKRAASSTAAP 966


>gi|242801861|ref|XP_002483856.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218717201|gb|EED16622.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 242

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AK+  +S S P +       KR+ K++ LT   T W +
Sbjct: 71  SIQIRWVPGHAKIPENEAADLAAKQGAASTSSPPHKSSYASLKRYAKARALTAAQTLWQS 130

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + +     P +P        ++ + RL +G  I+
Sbjct: 131 VAPQTYQDLGITTSPKHP-------GELQLNRLDLGHIIA 163


>gi|154272902|ref|XP_001537303.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150415815|gb|EDN11159.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 970

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSI--QNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I     +SSN        LL ++    ++   W P H+
Sbjct: 732 TEDSSNPQIWLCLDNT-SVIWGILGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 786

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 787 GIEGNEEADRLAKRAVSSTAAP 808


>gi|358376686|dbj|GAA93218.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 640

 Score = 48.9 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 69  LHFTWVPSHVGIAGNEEADRLAKEAL-SSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           L   WVP H G  GNE ADRLAKE + + N  P   + ++  K F ++KI   W  EW  
Sbjct: 429 LRLQWVPGHCGDPGNETADRLAKETVGAENKHPFQHL-LSREKAFIRNKIKKEWEQEWKT 487

Query: 128 LAD-NKLRQIKEENRPWNPPFSMSRKEQVSITRLR 161
             +   LR++ +       P S +R+   S+ R R
Sbjct: 488 SKNGGHLRRVDQA-----LPASRTRRLYGSLPRNR 517


>gi|241567430|ref|XP_002402293.1| conserved hypothetical protein [Ixodes scapularis]
 gi|215501983|gb|EEC11477.1| conserved hypothetical protein [Ixodes scapularis]
          Length = 345

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNL-LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
           +S +AL+ +     + P+AR + +L L      + + F WVPSH GI GNEEAD+LA   
Sbjct: 133 DSRTALRHLLRTDDAPPLARSVVSLTLRLRDRGWEIAFQWVPSHCGIPGNEEADKLA--G 190

Query: 94  LSSNSPPVNTIPINDFKRFFKSKILT 119
           L  ++P     P +   RF  +++L 
Sbjct: 191 LVHDNP---DFPASTASRFNDARLLV 213


>gi|154271895|ref|XP_001536800.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408787|gb|EDN04243.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 433

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        +L ++    ++   W P H+
Sbjct: 195 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHEVLRQH----NVGLKWAPGHM 249

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEADRLAK A+SS   P   +
Sbjct: 250 GIEGNEEADRLAKRAVSSTVAPAYGL 275


>gi|154270037|ref|XP_001535890.1| hypothetical protein HCAG_09166 [Ajellomyces capsulatus NAm1]
 gi|150413780|gb|EDN09159.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 331

 Score = 48.5 bits (114), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
           I   ++L  T+++    ++     +L ALQ+ +  SS   I R I + L++ +     + 
Sbjct: 63  ILMGLNLILTSDRRRAAIFTDNQAALRALQNPRR-SSGQSILRRIIDALERVRSQGLQVE 121

Query: 71  FTWVPSHVGIAGNEEADRLAKEA 93
           F W+P+H GI GNE AD+LA EA
Sbjct: 122 FYWIPAHQGIEGNELADKLAMEA 144


>gi|154277178|ref|XP_001539430.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150413015|gb|EDN08398.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 699

 Score = 48.5 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 7/82 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 461 TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 515

Query: 79  GIAGNEEADRLAKEALSSNSPP 100
           GI GNEEADRLAK A+SS + P
Sbjct: 516 GIEGNEEADRLAKRAVSSTAAP 537


>gi|358376063|dbj|GAA92634.1| hypothetical protein AKAW_10748 [Aspergillus kawachii IFO 4308]
          Length = 399

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 30/57 (52%)

Query: 69  LHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEW 125
           L   WVP H G  GNE ADRLAKEA+ +         ++  K F ++ I + W  EW
Sbjct: 188 LRLQWVPGHCGNPGNETADRLAKEAVGAEKKHPFQHLLSREKAFIRNTIKSEWEQEW 244


>gi|154271075|ref|XP_001536391.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409614|gb|EDN05058.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1139

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK-HVFSLH 70
           I   ++L  T+++    ++     +L ALQ+ +  SS   I R I + L++ +     + 
Sbjct: 871 ILMGLNLILTSDRRRAAIFTDNQAALRALQNPRR-SSGQSILRRIIDALERVRSQGLQVE 929

Query: 71  FTWVPSHVGIAGNEEADRLAKEA 93
           F W+P+H GI GNE AD+LA EA
Sbjct: 930 FYWIPAHQGIEGNELADKLAMEA 952


>gi|427779363|gb|JAA55133.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 417

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 12/81 (14%)

Query: 34  DNSLSALQSIQNVSSSNP---IAREIRNLL----DKNKHVFSLHFTWVPSHVGIAGNEEA 86
            +S +ALQS+ +     P   +  E+R+LL    +K  HV    F W+PSH G+ GNE A
Sbjct: 255 SDSKAALQSLLSALRHGPYEQLVFEVRHLLHTSIEKGHHV---KFQWLPSHCGVIGNEHA 311

Query: 87  DRLAKEALSSNSPPVNTIPIN 107
           D  A+ AL  +   + TIP++
Sbjct: 312 DSAARSALQGDR--LETIPLS 330


>gi|242825825|ref|XP_002488518.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712336|gb|EED11762.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 427

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 35  NSLSALQSIQN---VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S SA+Q+I+N    S    I    ++  + +     LH  W+P H    GN+ ADRLAK
Sbjct: 182 DSKSAIQAIKNPRNTSGQRVIEAINQSAYELDSRGIPLHLQWIPGHCDNLGNDAADRLAK 241

Query: 92  EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEW 125
            A+          P++  K   + +IL  W  EW
Sbjct: 242 AAVGPTKTHPFCRPVSREKAAIQRQILKEWEDEW 275


>gi|154277140|ref|XP_001539411.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150412996|gb|EDN08379.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1128

 Score = 47.8 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 28  QVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+GI GNEE
Sbjct: 897 QIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHMGIEGNEE 951

Query: 86  ADRLAKEALSSNSPP 100
           ADRLAK A+SS + P
Sbjct: 952 ADRLAKRAVSSTAAP 966


>gi|242827513|ref|XP_002488845.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
 gi|218712006|gb|EED11435.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1139

 Score = 47.8 bits (112), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 4/106 (3%)

Query: 35  NSLSALQSIQNVS--SSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S SALQ+I+N S  S   + + I ++  + +    SL   W+P H    GN+ AD LAK
Sbjct: 894 DSKSALQAIRNPSNKSGQRVIQAINQSAYELDSRGISLRLQWIPGHCDDPGNDAADHLAK 953

Query: 92  EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEW-ANLADNKLRQI 136
            A+  +       P++  K   + +IL  W  EW A+     LR+I
Sbjct: 954 TAVGLDKTHPFCRPVSREKAAIRKQILKEWEDEWKASRKGAHLRRI 999


>gi|154273475|ref|XP_001537589.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415197|gb|EDN10550.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 307

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 7/86 (8%)

Query: 21  TAEKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHV 78
           T + S  Q++L  DN+ S +  I+    +SSN        LL ++    ++   W P H+
Sbjct: 62  TEDSSNPQIWLCLDNT-SVIWGIRGSAAASSNWAYNRCHELLRQH----NVGLKWAPGHM 116

Query: 79  GIAGNEEADRLAKEALSSNSPPVNTI 104
           GI GNEEAD LAK A+SS + P   +
Sbjct: 117 GIEGNEEADPLAKRAVSSTAAPAYGL 142


>gi|55275147|gb|AAV49370.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSIPDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K +    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IQKER----VYLAWVPAHKGIGGNEQVDKLVSSGI 714


>gi|427783055|gb|JAA56979.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 485

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 11/80 (13%)

Query: 35  NSLSALQSIQNVSSSNP---IAREIRNLL----DKNKHVFSLHFTWVPSHVGIAGNEEAD 87
           +S +ALQS+ +     P   +  EIR LL    +K  HV    F W+PSH G+ GNE AD
Sbjct: 256 DSKAALQSMLSALRRGPYEQLVFEIRGLLHASHEKGHHVT---FQWLPSHCGVIGNEHAD 312

Query: 88  RLAKEALSSNSPPVNTIPIN 107
             A+ AL   +   +TIP++
Sbjct: 313 NAARAALEDTTQE-DTIPLS 331


>gi|261336121|dbj|BAI44754.1| pol-like protein [Alternaria alternata]
          Length = 1186

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%)

Query: 20   GTAEKSECQVYLTPDNSLSALQSIQNVSSS---NPIAREIRNLLDKNKHVFSLHFTWVPS 76
            G  E+ +  VY      + ++   +  S +     IA++++ L +K     S+   W+P+
Sbjct: 1044 GDGERKDIAVYTDNQAVIWSIAKAEGRSGAYILAGIAQQVQELQNKG---LSVTVRWIPA 1100

Query: 77   HVGIAGNEEADRLAKEALSSN---------SPPVNTIPI-NDFKRFFKSKILTTWNTEW 125
            HVGI GNE AD+ AKEA              PP    P+    +R+ K++    W + W
Sbjct: 1101 HVGIEGNEAADQAAKEATGWREDGRRQQPAEPPPQLYPLRTTLRRWCKTQAERQWISAW 1159


>gi|22596263|gb|AAN03052.1|AF457055_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y +DL      SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +W
Sbjct: 635 YAIDLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIGKDK----VYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 691 VPAHKGIGGNEQVDKLVSSGI 711


>gi|328714487|ref|XP_003245372.1| PREDICTED: hypothetical protein LOC100572687 [Acyrthosiphon pisum]
          Length = 366

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%)

Query: 67  FSLHFTWVPSHVGIAGNEEADRLAKEALSS-NSPPVNTIPINDFKRFFKSKILTTWNTEW 125
           +S+ + W+ SH  I GNE +D  A++A++S ++  +N + + D K   K+ I   W   W
Sbjct: 269 YSIIWIWILSHNQITGNERSDEKARQAITSPDAIRLNCLTLFDAKLTAKT-ITNLWLQTW 327

Query: 126 ANLADNKLRQIKEENRPWNPPFSMSRKEQVSITR 159
                +KL +IK   R W  P  +SRK + +I R
Sbjct: 328 KQ-GTSKLNEIKNTIRTWPSPPEVSRKMETAINR 360


>gi|242825709|ref|XP_002488494.1| hypothetical protein TSTA_109170 [Talaromyces stipitatus ATCC
           10500]
 gi|218712312|gb|EED11738.1| hypothetical protein TSTA_109170 [Talaromyces stipitatus ATCC
           10500]
          Length = 230

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 32/61 (52%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE ++S SPP +TI     +R  K++      T W N
Sbjct: 114 SIQVRWVPGHAKIPENETADLAAKEGVASTSPPPHTISYASLERNAKAQSFAAAQTLWQN 173

Query: 128 L 128
           +
Sbjct: 174 V 174


>gi|391379772|gb|AFM44394.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLPDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|353245589|emb|CCA76508.1| hypothetical protein PIIN_10501 [Piriformospora indica DSM 11827]
          Length = 348

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 35/185 (18%)

Query: 10  EHIYYQVDLTG---------TAEKSECQVYLTPDNSLSALQSIQNVSSSNPIARE--IRN 58
           EH  ++ +L G         T + +  +V ++ DN  +    IQ+++ + P A +  + N
Sbjct: 78  EHTVHEGELVGIALGIHLARTMQGNRAKVNISLDNQAA----IQSITRARPNAGQHVVEN 133

Query: 59  LLDKNKHVFS------LHFTWVPSHVGIAGNEEADRLAKEALSSNSP------------- 99
           +L + +   S      + FTWVP H GI GNE AD  AK+A++  +              
Sbjct: 134 ILSEIEDELSDYRRLRMEFTWVPGHEGIQGNEAADEEAKKAITEGASRPSEHPRWLREPL 193

Query: 100 PVNTIPI-NDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSIT 158
           P N   +  + KR  K      WN        +K+ +     R       +SR++   + 
Sbjct: 194 PSNLSAVKQECKRLAKEGARERWNNSKRFDRMSKIDETMPSGRYLKLTDKLSRRDAALLI 253

Query: 159 RLRIG 163
           +LR G
Sbjct: 254 QLRTG 258


>gi|339507246|gb|AEJ81035.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++  PDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 562 VVSFPDTTNQKTELQAIRLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K+K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 622 INKDK----VYLAWVPAHKGIGGNEQVDKLVSNGI 652


>gi|222428296|gb|ACM49967.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 IVSIPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQIDKLVSAGI 711


>gi|242822065|ref|XP_002487807.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712728|gb|EED12153.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 128

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 37/75 (49%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S SP  +       KR+ K++ L+T  T W +
Sbjct: 45  SIQIRWVPGHAEIPKNEAADLAAKEGAASISPSPHKSSYASLKRYAKTQSLSTAQTRWQS 104

Query: 128 LADNKLRQIKEENRP 142
           +A    + ++    P
Sbjct: 105 VAPQTYQDLEITTSP 119


>gi|327458371|gb|AEA76625.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSIPDTTNQKTELQAILLALQDSGIEVNIITDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSXGI 556


>gi|451170523|gb|AGF32924.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+I + S S  +++ I  
Sbjct: 621 VISLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAIPDKSESELVSQIIEQ 679

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|376407117|gb|AFB39194.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSSGI 710


>gi|353227190|emb|CCA77710.1| hypothetical protein PIIN_10861, partial [Piriformospora indica DSM
           11827]
          Length = 530

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 46/199 (23%)

Query: 10  EHIYYQVDLTGTAEKSEC---------QVYLTPDNSLSALQSIQNVSSS------NPIAR 54
           EH+ ++ +L G A   +          ++ ++ DN  +A+Q ++NVS+       + I R
Sbjct: 320 EHMVHKGELVGIALGVQLAKMERIIIPRIKISLDNQ-AAIQGMENVSAKAGQHIIHKIHR 378

Query: 55  EIRNLLDKNKHVFSL----------------HFTWVPSHVGIAGNEEADRLAKEALSSNS 98
            I  L +  K    L                  TWVP H GI GNE AD+ AK+A++  S
Sbjct: 379 AIDELRNNQKRRQELVEASDDETRINRSTQITLTWVPGHEGIEGNEAADKEAKKAITDGS 438

Query: 99  PPVNTIP----------INDFKRFFKSKILTTWNTEWANLAD-NKLRQIKE---ENRPWN 144
               T+P          I+  ++  K     + + +W + A  ++ R I +    N+   
Sbjct: 439 STAATLPPWTKDTLPQNISALRQELKLAARKSAHDKWKSSAQYDRTRPIDKTMPSNKYLQ 498

Query: 145 PPFSMSRKEQVSITRLRIG 163
               ++R E  ++ +LR G
Sbjct: 499 ITDELTRAEAAALIQLRTG 517


>gi|242768198|ref|XP_002341520.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218724716|gb|EED24133.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 200

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 14/100 (14%)

Query: 35  NSLSALQSIQNVSSSN-----PIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           +S +A+Q+I     +       IA +   L ++   V S+H  W+P+H GI GNE ADR 
Sbjct: 19  DSQAAIQAIDGTQKTGQQILGSIAEKWDELRNQGVQV-SIH--WIPTHQGIEGNERADRA 75

Query: 90  AKEALSSNSPPVNTI----PINDFKRFFKSKILTTWNTEW 125
           AKEA  +    +  I    P++  KR  K+     W  EW
Sbjct: 76  AKEA--TGWRLIRNIGLQQPLSALKRDLKTLAYKQWEQEW 113


>gi|339507379|gb|AEJ81101.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q++ + S S  +++ I  L
Sbjct: 562 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQALPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 622 INKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 652


>gi|255940918|ref|XP_002561228.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585851|emb|CAP93579.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 696

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 19/136 (13%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHV----FSLHFTWVPSHVGIAGNEEADRLA 90
           +S SALQ+I+N  + +   R I  +L     V     +L   W+P H    GN+ ADRLA
Sbjct: 464 DSKSALQAIENPGNKSG-QRIIHAILQAAAEVQAKGIALRLQWIPGHCDDPGNDAADRLA 522

Query: 91  KEALSSNSPPVNTIPINDF----KRFFKSKILTTWNTEW-ANLADNKLRQIKEENRPWNP 145
           K+A S    P  T P        +   + KI   W  EW A+     LR+I         
Sbjct: 523 KDAAS----PGKTHPFRPLLTRKRALIRDKIRAQWEREWNASTNGGHLRKIDR-----TL 573

Query: 146 PFSMSRKEQVSITRLR 161
           P S +RK   ++ R R
Sbjct: 574 PASYTRKLYGNLPRGR 589


>gi|327458373|gb|AEA76626.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSIPDTTNQKTELQAILLALQDSGIEVNIITDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 556


>gi|427798001|gb|JAA64452.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1259

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 35   NSLSALQSIQNVSSSNP-------IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEAD 87
            +S +ALQS+ +     P       IA E  +L +K      L F W+PSH GI GNE AD
Sbjct: 1037 DSKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHE---LAFQWLPSHCGIIGNERAD 1093

Query: 88   RLAKEALSSNS----PPVNTIPINDFKRFFKSKILTTWN 122
            R A+ A + N+    P   T      +   + +  + WN
Sbjct: 1094 RAARSAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1132


>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1121

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 35   NSLSALQSIQNVS-SSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKE 92
            +SLS ++++     + NP+  ++ + L +  ++   +   WVP H GI GNE AD  A  
Sbjct: 1020 DSLSVVRALHTGKPNKNPVLCDVEKQLTNAYRNTSEITVCWVPGHAGIDGNERADACAAV 1079

Query: 93   ALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKL 133
            A   ++  VN++P  D K      +   W  EW    +NKL
Sbjct: 1080 AAQKSNLDVNSVPYQDLKALVHRNLRERWQKEWDLETNNKL 1120


>gi|154287184|ref|XP_001544387.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150408028|gb|EDN03569.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 281

 Score = 46.6 bits (109), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 46  VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTI 104
            +SSN        LL ++    ++   W P H+GI GNEEADRLAK A+SS + P   +
Sbjct: 23  AASSNWAYNRCHELLRQH----NVGLKWAPGHMGIEGNEEADRLAKRAVSSTAAPAYGL 77


>gi|319444194|gb|ADV58205.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEK-SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +  SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|391865317|gb|EIT74602.1| reverse transcriptase [Aspergillus oryzae 3.042]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 15/128 (11%)

Query: 9   DEHIYYQVDLTGT--------AEKSECQVYLTPDNSLSALQSIQNVS--SSNPIAREIRN 58
           +E   Y  +LTG          EK+   +++   +S +A+Q++QN    S   I  +I  
Sbjct: 172 EESTVYAGELTGIRMALHKLRKEKTPATIFV---DSQAAIQAVQNPRRPSGQYILDQIYY 228

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPI--NDFKRFFKSK 116
           ++ +      +   W+P+H+G+ GNE AD  A+E        +          +R  K +
Sbjct: 229 IIRRYNMQNRVQIRWIPAHIGVPGNEAADEAAREGTQRTGEAICLAAAVKRQIRRSIKDR 288

Query: 117 ILTTWNTE 124
            +  W TE
Sbjct: 289 WIREWKTE 296


>gi|154272780|ref|XP_001537242.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415754|gb|EDN11098.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 306

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 46  VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTI 104
            +SSN        LL ++    ++   W P H+GI GNEEADRLAK A+SS + P   +
Sbjct: 94  AASSNWAYNRCHELLRQH----NVGLKWAPGHMGIEGNEEADRLAKRAVSSTAAPAYGL 148


>gi|299745166|ref|XP_001831512.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
 gi|298406463|gb|EAU90359.2| hypothetical protein CC1G_09041 [Coprinopsis cinerea okayama7#130]
          Length = 289

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 69  LHFTWVPSHVGIAGNEEADRLAKEA--LSSNSPPVNTIPINDFKRFFKSKILTTWNTEWA 126
           +H TW PSH GI GNE  DRLAK+A  L+ N+P   TI   +  R  K      W  EW+
Sbjct: 64  IHLTWCPSHHGIPGNERVDRLAKQATNLAHNAP--ITISRTNAIRRAKLAAQKEWTQEWS 121


>gi|427798837|gb|JAA64870.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 35   NSLSALQSIQNVSSSNP-------IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEAD 87
            +S +ALQS+ +     P       IA E  +L +K      L F W+PSH GI GNE AD
Sbjct: 998  DSKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHE---LAFQWLPSHCGIIGNERAD 1054

Query: 88   RLAKEALSSNS----PPVNTIPINDFKRFFKSKILTTWN 122
            R A+ A + N+    P   T      +   + +  + WN
Sbjct: 1055 RAARSAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1093


>gi|154285824|ref|XP_001543707.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150407348|gb|EDN02889.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 226

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 46  VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTI 104
            +SSN        LL ++    ++   W P H+GI GNEEADRLAK A+SS + P   +
Sbjct: 14  AASSNWAYNRCHELLRQH----NVGLKWAPGHMGIEGNEEADRLAKRAVSSTAAPAYGL 68


>gi|242797976|ref|XP_002483073.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
           10500]
 gi|218716418|gb|EED15839.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
           10500]
          Length = 701

 Score = 46.6 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 27/134 (20%)

Query: 44  QNVSSSNPIAREIRNLLDKNKHVFS---------------LHFTWVPSHVGIAGNEEADR 88
           QNV  +  +A      LD+N+H+                 L   WVP H G  GNE ADR
Sbjct: 210 QNVLGAAAVA------LDQNQHIIQHRKQSARELKARGIPLRLQWVPGHCGDPGNEAADR 263

Query: 89  LAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLAD-NKLRQIKEENRPWNPPF 147
           LAKEA+  +        ++  K F +++I   W   W    +   LR+I       N P 
Sbjct: 264 LAKEAVGLDKEHPFQHLLSREKGFIRNRIQEEWERGWKTSKNGGHLRRIDR-----NLPA 318

Query: 148 SMSRKEQVSITRLR 161
             +R+   S+ R R
Sbjct: 319 VRTRRMYGSLPRNR 332


>gi|427784665|gb|JAA57784.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 15/139 (10%)

Query: 35  NSLSALQSIQNV---SSSNPIAREIRNLLDKNKHVFSLH---FTWVPSHVGIAGNEEADR 88
           +S SALQ++Q          +  EIR+  D ++ + + H   F W+PSH GIAGN+ AD 
Sbjct: 230 DSRSALQTLQFALRHGLHEQLVYEIRH--DYHQALENGHDVTFQWLPSHCGIAGNDRADE 287

Query: 89  LAKEA----LSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWN 144
            A+ A    L    P   T      +   +   L  WNT+    +++++  I   N    
Sbjct: 288 AARSAHEKDLQVPIPLSRTDAARQLQSLARRLTLLQWNTQ--GFSNSRVYSIY-PNLQLR 344

Query: 145 PPFSMSRKEQVSITRLRIG 163
            P  +SR+++  + R+ +G
Sbjct: 345 LPSGLSRRDETLLCRMWLG 363


>gi|256011460|gb|ACU55586.1| pol protein [Human immunodeficiency virus 1]
          Length = 1012

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 630 VVSIPDTTNQKTELQAILLALQDSGIEVNIITDSQYALGIIQAQPDKSESELVSQIIEQL 689

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 690 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 720


>gi|261336140|dbj|BAI44772.1| pol-like protein [Alternaria alternata]
          Length = 1295

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 52   IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA----------LSSNSPPV 101
            IAR++R L D  + V      W+P+HVGI GNE  D+ AKEA          L +++PP 
Sbjct: 1076 IARQVRELQDNGRTVT---VRWIPAHVGIPGNEAVDKAAKEATGWRENGRRSLPADAPPQ 1132

Query: 102  NTIPINDFKRFFKSKILTTWNTEW 125
                 +  KR+   +    W  +W
Sbjct: 1133 LFTIRSTVKRWCSIQAERAWIAKW 1156


>gi|259482037|tpe|CBF76131.1| TPA: hypothetical protein ANIA_10625 [Aspergillus nidulans FGSC A4]
          Length = 486

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 38  SALQSIQNVSSSNP--IAREIRNLLDKNKHV-FSLHFTWVPSHVGIAGNEEADRLAKEA 93
           + LQ+++N  S +   I   I   L+K +    ++HF W+P+H G+ GNE+ADR AKEA
Sbjct: 252 ATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVEGNEQADRRAKEA 310


>gi|67537820|ref|XP_662684.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
 gi|40740985|gb|EAA60175.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
          Length = 804

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 38  SALQSIQNVSSSNP--IAREIRNLLDKNKHV-FSLHFTWVPSHVGIAGNEEADRLAKEA 93
           + LQ+++N  S +   I   I   L+K +    ++HF W+P+H G+ GNE+ADR AKEA
Sbjct: 252 ATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVEGNEQADRRAKEA 310


>gi|427798201|gb|JAA64552.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1128

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 35   NSLSALQSIQNVSSSNP-------IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEAD 87
            +S +ALQS+ +     P       IA E  +L +K      L F W+PSH GI GNE AD
Sbjct: 998  DSKAALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHE---LAFQWLPSHCGIIGNERAD 1054

Query: 88   RLAKEALSSNS----PPVNTIPINDFKRFFKSKILTTWN 122
            R A+ A + N+    P   T      +   + +  + WN
Sbjct: 1055 RAARSAHTENNEILIPLSRTDAARKLRMLARQRTTSQWN 1093


>gi|427778015|gb|JAA54459.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 12/80 (15%)

Query: 35  NSLSALQSIQNVSSSNP---IAREIRNLL----DKNKHVFSLHFTWVPSHVGIAGNEEAD 87
           +S +ALQS+ +     P   +  EIR L+    +K  HV    F W+PSH G+ GNE AD
Sbjct: 254 DSKAALQSVLSALRRGPYEQLVFEIRYLIHTSHEKGHHVT---FQWLPSHCGVIGNEHAD 310

Query: 88  RLAKEALSSNSPPVNTIPIN 107
             A+ AL       +TIP++
Sbjct: 311 NAARAALEGTQE--DTIPLS 328


>gi|376406742|gb|AFB38857.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +     ++L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQDALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|238508578|ref|XP_002385478.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
 gi|220688370|gb|EED44723.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
          Length = 1312

 Score = 46.2 bits (108), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 15/129 (11%)

Query: 7    TCDEHIYYQVDLTGT--------AEKSECQVYLTPDNSLSALQSIQNVS--SSNPIAREI 56
            T +E   Y  +LTG          E     V++   +S +A+Q++QN    S   I  +I
Sbjct: 1044 TEEESTVYAGELTGIRMALHRLRKETRPATVFV---DSEAAIQAVQNPRRPSGQYILDQI 1100

Query: 57   RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSK 116
              ++ +      +   W+P+H+G+ GNE AD  A+E        +        KR  + +
Sbjct: 1101 YYIVRRYNMQGRVQIRWIPAHIGVPGNEAADEAAREGTQKAGEAICLAAAA--KRQIRRR 1158

Query: 117  ILTTWNTEW 125
            I   W  EW
Sbjct: 1159 IKDRWTREW 1167


>gi|254691745|gb|ACT79336.1| pol protein [Simian immunodeficiency virus]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           + VDL      S+  +      ++  LQ + + S S  +   I+ L+ KN    +++  W
Sbjct: 33  WAVDLALKDSGSQVNIVTDSQYAMGVLQGMPDQSDSPLVEEIIQKLMQKN----AVYLAW 88

Query: 74  VPSHVGIAGNEEADRL 89
           VP+H GI GNEE D+L
Sbjct: 89  VPAHKGIGGNEEVDKL 104


>gi|159031797|dbj|BAF91870.1| polyprotein [Human immunodeficiency virus 1]
          Length = 515

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 429 VISLPDTTNQKTELQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 488

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLA 90
           + K K    ++  WVP+H GI GNE+ D+L 
Sbjct: 489 IKKEK----VYLAWVPAHKGIGGNEQVDKLV 515


>gi|307176190|gb|EFN65847.1| hypothetical protein EAG_02388 [Camponotus floridanus]
          Length = 220

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 69  LHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANL 128
           ++  W+PSH G  GNE AD LAK+  S  +     +P  D    FK       N EW + 
Sbjct: 75  IYLIWIPSHKGFIGNEIADILAKQGASERADDSIHVPFQDLTSVFK-------NEEWNDT 127

Query: 129 ADNKLRQIKEENRPW-NPPFSMSRKE 153
            D  L Q + + + + +  +  SRK+
Sbjct: 128 QDRILTQARVKGQHYFSNYYKRSRKK 153


>gi|256011496|gb|ACU55604.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALEDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|256011140|gb|ACU55426.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    + + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSIPDTTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSXGI 711


>gi|242825218|ref|XP_002488395.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218712213|gb|EED11639.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 669

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP HV I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 486 SIQIRWVPGHVKIPENEAADLAAKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 545

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 546 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIA 578


>gi|55275197|gb|AAV49415.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L   A  SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQASGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEKVDKLVSAGI 711


>gi|49574392|gb|AAT66865.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 2   LGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLL 60
           + + DT ++    Q + L      SE  +   P  +L  +Q+  + S S  + + I  L+
Sbjct: 467 VSLTDTTNQKTELQAIHLASQDSGSEVNIVTDPQYALGIIQAQPDKSESELVNQIIEQLI 526

Query: 61  DKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 527 KKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|388891220|gb|AFK80514.1| pol protein, partial [Simian immunodeficiency virus]
          Length = 998

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           + VDL      S+  +       +  LQ + + S S  +   I+ L+ KN    +++  W
Sbjct: 630 WAVDLALKDSGSQVNIVTDSQYVMGVLQGMPDQSDSPIVEEIIQKLMQKN----AVYLAW 685

Query: 74  VPSHVGIAGNEEADRLA 90
           VP+H GI GNEE D+L 
Sbjct: 686 VPAHKGIGGNEEVDKLV 702


>gi|322782100|gb|EFZ10335.1| hypothetical protein SINV_09428 [Solenopsis invicta]
          Length = 225

 Score = 46.2 bits (108), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 24/39 (61%)

Query: 71  FTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDF 109
             W+P+HVGIAGNE+AD  AKEA  S   P   IP  D 
Sbjct: 8   LVWIPAHVGIAGNEKADETAKEASRSGLKPRFKIPHTDL 46


>gi|154273753|ref|XP_001537728.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150415336|gb|EDN10689.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 292

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 73  WVPSHVGIAGNEEADRLAKEALSSNSPPVNTI 104
           W P H+GI GNEEADRLAK A+SS + P   +
Sbjct: 75  WAPGHMGIEGNEEADRLAKRAVSSTAAPAYGL 106


>gi|154285828|ref|XP_001543709.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150407350|gb|EDN02891.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 288

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 23/32 (71%)

Query: 73  WVPSHVGIAGNEEADRLAKEALSSNSPPVNTI 104
           W P H+GI GNEEADRLAK A+SS + P   +
Sbjct: 92  WAPGHMGIEGNEEADRLAKRAVSSTAAPAYGL 123


>gi|242810776|ref|XP_002485651.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218716276|gb|EED15698.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 592

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 409 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPDPHKSSYASLKRYAKTQSLSAAQSQWEK 468

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIG----PCISHG 169
           +A    + ++    P        R  ++ + RL +G     C  HG
Sbjct: 469 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIAACTDHG 507


>gi|158935175|emb|CAM90426.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 45.8 bits (107), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +QS  ++S S+ + + I  L+ K K    ++ +WVP+H GI
Sbjct: 41  QDSEVEVNIVTDSQYALGIIQSQPDISESDIVNQIIEQLVKKEK----IYLSWVPAHKGI 96

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 97  GGNEQIDKLVSAGI 110


>gi|358376556|dbj|GAA93101.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
          Length = 922

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFS----LHFTWVPSHVGIAGNEEADRLA 90
           +S+SALQ+I+N S+ +   R IR +L     + +    +   WVP H    GN+EADRLA
Sbjct: 707 DSMSALQAIRNPSNRSG-QRTIRAILQAASEMKARGIPIRLQWVPGHCNDPGNDEADRLA 765

Query: 91  KEALS 95
           KEA+ 
Sbjct: 766 KEAVG 770


>gi|260533675|gb|ACX45080.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S +  +++ I  L+DK+K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGIIQAQPDKSEAEIVSQIIEKLIDKDK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|256010795|gb|ACU55254.1| pol protein [Human immunodeficiency virus 1]
          Length = 1011

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    + + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 629 VVSLPDTTNQKTELHAIXLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEXVSQIIEQL 688

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 689 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 719


>gi|117940221|gb|ABK58237.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLTDTTNQQTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L  + +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSQGI 710


>gi|427797513|gb|JAA64208.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1216

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 12/97 (12%)

Query: 69   LHFTWVPSHVGIAGNEEADRLAKEALSS----NSPPVNTIPINDFKRFFKSKILTTWNTE 124
            + F WVP H GIA NE AD LA  +L+      +P  + I    FKR    KI      E
Sbjct: 1033 VRFLWVPGHAGIALNETADSLASASLNFPVVLVAPQFSFITAERFKRLLILKI-----NE 1087

Query: 125  WANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLR 161
             + L   + R ++     WN    +SR+ +V++T  R
Sbjct: 1088 TSLLHSEEFRHLQFT---WNTTKCLSRQCEVTLTSFR 1121


>gi|117940230|gb|ABK58245.1| pol protein [Human immunodeficiency virus 1]
          Length = 1009

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 627 VVSLTDTTNQQTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 686

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L  + +
Sbjct: 687 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSQGI 717


>gi|255708321|dbj|BAH96533.1| Pol [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.8 bits (107), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSIPDTTNQKTELQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GN++ D+L    +
Sbjct: 680 IKKEK----IYLAWVPAHKGIGGNDQVDKLVSSGI 710


>gi|255708271|dbj|BAH96488.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGV 711


>gi|427782051|gb|JAA56477.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 455

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)

Query: 47  SSSNPIAREIRNLLDKNKH------VFSLH-----------FTWVPSHVGIAGNEEADRL 89
           S S P  + +R++L +  H      +  LH           F W+P H GI+GN  AD  
Sbjct: 229 SDSKPALQCVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNA 288

Query: 90  AKEALSSNS----PPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNP 145
           A+ +    +    P   T   +  +   +S  L  WNT   ++   +L QI        P
Sbjct: 289 ARTSHEQETTVPIPLSRTDAASQLRHLARSLCLAEWNTP--SIRHTRLHQIN-PTLELRP 345

Query: 146 PFSMSRKEQVSITRLRIG 163
           P  + R+E   + RL +G
Sbjct: 346 PAGLHRREASLLCRLWLG 363


>gi|25166871|gb|AAN73655.1|AF484502_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  I + I  L
Sbjct: 1051 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELINQIIEQL 1110

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            ++K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 1111 INKEK----IYLSWVPAHKGIGGNEQVDKLVSNGI 1141


>gi|37677775|gb|AAQ97453.1| Pol protein [Human immunodeficiency virus 1]
 gi|37681532|gb|AAQ97642.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q++ + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSELEVNIVTDSQYALGIIQALPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSAGI 711


>gi|56609302|gb|AAW03257.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q++ + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQALPDRSESGIVNKIIEKLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|55275177|gb|AAV49397.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSIPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 711


>gi|22596389|gb|AAN03164.1|AF457069_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.4 bits (106), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P+T ++    Y + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPETTNQKTELYAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K++    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IEKDR----VYLSWVPAHKGIGGNEQVDKLVSSGI 711


>gi|427779469|gb|JAA55186.1| Putative tick transposon [Rhipicephalus pulchellus]
 gi|427782053|gb|JAA56478.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 455

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 24/138 (17%)

Query: 47  SSSNPIAREIRNLLDKNKH------VFSLH-----------FTWVPSHVGIAGNEEADRL 89
           S S P  + +R++L +  H      +  LH           F W+P H GI+GN  AD  
Sbjct: 229 SDSKPALQCVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNA 288

Query: 90  AKEALSSNS----PPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNP 145
           A+ +    +    P   T   +  +   +S  L  WNT   ++   +L QI        P
Sbjct: 289 ARTSHEQETTVPIPLSRTDAASQLRHLARSLCLAEWNTP--SIRHTRLHQIN-PTLELRP 345

Query: 146 PFSMSRKEQVSITRLRIG 163
           P  + R+E   + RL +G
Sbjct: 346 PAGLHRREASLLCRLWLG 363


>gi|328834424|gb|AEB52835.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      S+  +      +L  +Q+  + S S  + + I  L++KNK    ++ +W
Sbjct: 636 YAIQLALQDSGSQVNIVTDSQYALGIIQAHPDRSESEMVNQIIEKLIEKNK----VYLSW 691

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 692 VPAHKGIGGNEQVDKLVSSGI 712


>gi|170778879|gb|ACB36839.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q++ + S S  +++ I  L+ K K    ++  WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAVPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|441442755|gb|AGC32298.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 987

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441442740|gb|AGC32288.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442743|gb|AGC32290.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 987

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|158967359|gb|ABW86707.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSSGI 711


>gi|441434060|gb|AGC31711.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441434040|gb|AGC31698.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441442737|gb|AGC32286.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442746|gb|AGC32292.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442749|gb|AGC32294.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442752|gb|AGC32296.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442758|gb|AGC32300.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442761|gb|AGC32302.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442764|gb|AGC32304.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442767|gb|AGC32306.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 987

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441434054|gb|AGC31707.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441434048|gb|AGC31703.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434057|gb|AGC31709.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434063|gb|AGC31713.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434066|gb|AGC31715.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434069|gb|AGC31717.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434075|gb|AGC31721.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434078|gb|AGC31723.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434081|gb|AGC31725.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434084|gb|AGC31727.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441434087|gb|AGC31729.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|395758866|gb|AFN70523.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|376407536|gb|AFB39570.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTANQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|441434045|gb|AGC31701.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441434072|gb|AGC31719.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441434051|gb|AGC31705.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S+ + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSDSDIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|90409437|ref|ZP_01217503.1| hypothetical protein PCNPT3_00010, partial [Psychromonas sp. CNPT3]
 gi|90309457|gb|EAS37676.1| hypothetical protein PCNPT3_00010 [Psychromonas sp. CNPT3]
          Length = 776

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK-NKHVFSLH 70
           I+Y + L   +   +  ++    +++ AL++ + V S +    +I  LL       F + 
Sbjct: 673 IFYALLLIAASPPDQYFIFTDSLSAIEALKTPRAVKSQDFFIVKIIELLGSLFDKAFRIS 732

Query: 71  FTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKR 111
             WVPSH GI GNE+AD LAK  +   +     I   +F R
Sbjct: 733 LIWVPSHCGIPGNEKADSLAKTGVKEGAFYDRPISSQEFLR 773


>gi|38491658|gb|AAR22051.1| pol protein [Human immunodeficiency virus 1]
          Length = 1005

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 648 SEVNIVTDSQYALGIIQAQPDKSESESVSQIIEKLIEKDK----VYLSWVPAHKGIGGNE 703

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 704 QVDKLVSSGI 713


>gi|402534213|dbj|BAM37414.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I NL+ K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESELVXQIIENLIKKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|260533734|gb|ACX45133.1| pol protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  V      +L  +Q+  + S S  +++ I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNVVTDSQYALGIIQAQPDKSESELVSQIIEKLIEKDK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|376408359|gb|AFB40309.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGTIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|255984084|gb|ACU46114.1| pol protein [Human immunodeficiency virus 1]
          Length = 659

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 565 VISLTDTTNQKTELQAIHLALXDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 624

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 625 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSXGI 655


>gi|25166771|gb|AAN73565.1|AF484492_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 1051 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 1110

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 1111 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 1141


>gi|376407007|gb|AFB39095.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSGSELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|22596535|gb|AAN03293.1|AF457086_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVSKIIEELIRKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 702 QVDRLVSSGI 711


>gi|37221380|gb|AAQ89819.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  QV +  D+  +L  +Q+  + S S  +++ I  L+ K+K    ++ TWVP+H GI
Sbjct: 586 QDSGSQVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLTWVPAHKGI 641

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 642 GGNEQVDKLVSAGI 655


>gi|300431883|gb|ADK12785.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|242806002|ref|XP_002484651.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218715276|gb|EED14698.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 475

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 292 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 351

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P  P        ++ + RL +G  I+
Sbjct: 352 VAPQSYQDLEITTSPKRP-------GELQLNRLDLGHVIA 384


>gi|300431863|gb|ADK12767.1| pol protein [Human immunodeficiency virus 1]
 gi|300431873|gb|ADK12776.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|300431903|gb|ADK12803.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|229661960|gb|ACQ84410.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K K    ++ TWVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSDSELVSQIIEQLINKEK----VYLTWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|242814720|ref|XP_002486425.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218714764|gb|EED14187.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 285

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 102 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 161

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 162 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIA 194


>gi|376407623|gb|AFB39648.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEANIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|319444184|gb|ADV58196.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|37221382|gb|AAQ89820.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 45.4 bits (106), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  QV +  D+  +L  +Q+  + S S  +++ I  L+ K+K    ++ TWVP+H GI
Sbjct: 586 QDSGSQVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLTWVPAHKGI 641

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 642 GGNEQVDKLVSAGI 655


>gi|331232154|ref|XP_003328739.1| hypothetical protein PGTG_10040 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 407

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 29  VYLTPDNSLSALQSIQNVSSSNP---IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           VY+  DN    +Q  +N     P   +  EI +LL+  +    L   W P H GI GNE 
Sbjct: 199 VYILTDNK-GVIQRTKNFGVPKPGQYLFFEILHLLEFTQRDIDLFLVWCPGHKGITGNEI 257

Query: 86  ADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEW 125
           AD LA    S N  P   +  N       SK + T++ E+
Sbjct: 258 ADNLAAATTSRNKTPDRRLKGN------LSKAIRTFSAEF 291


>gi|10436122|gb|AAG16802.1| pol protein [Human immunodeficiency virus 1]
 gi|10436132|gb|AAG16811.1| pol protein [Human immunodeficiency virus 1]
 gi|300431893|gb|ADK12794.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|31980417|dbj|BAC77738.1| Pol polyprotein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESGLVSQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|400593497|gb|EJP61442.1| phosphotransferase family protein [Beauveria bassiana ARSEF 2860]
          Length = 1234

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 41/83 (49%)

Query: 1    MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLL 60
            M+ +  T  E + +   + G A   +C ++     +L A+Q+ ++ S    +   ++ L 
Sbjct: 1058 MVAVVATGREGVSFPTPIRGEASPGQCTIFTDYQAALQAIQNPKSPSGQYILTEAVQALN 1117

Query: 61   DKNKHVFSLHFTWVPSHVGIAGN 83
                H ++  F W+P+HVG+ GN
Sbjct: 1118 ALRSHKWNTQFRWIPAHVGVPGN 1140


>gi|57869553|gb|AAW57605.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESGLVSQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|37221378|gb|AAQ89818.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  QV +  D+  +L  +Q+  + S S  +++ I  L+ K+K    ++ TWVP+H GI
Sbjct: 586 QDSGSQVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKDK----VYLTWVPAHKGI 641

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 642 GGNEQVDKLVSAGI 655


>gi|427791993|gb|JAA61448.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
          Length = 1031

 Score = 45.1 bits (105), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 7/61 (11%)

Query: 35   NSLSALQSIQNVS----SSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLA 90
            +S +ALQ++ N      + + +A + R L        S+ F W+PSHVGIAGNEEAD LA
Sbjct: 973  DSRAALQTLANHRRAGLTGSLLASKFRALTASGA---SVSFHWLPSHVGIAGNEEADTLA 1029

Query: 91   K 91
            K
Sbjct: 1030 K 1030


>gi|339507689|gb|AEJ81256.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IP+T ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 562 IISIPETTNQKAELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 622 INKER----VYLSWVPAHKGIGGNEQVDKLVSNGI 652


>gi|319444174|gb|ADV58187.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|3163931|emb|CAA06947.1| pol polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1006

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 714


>gi|2708267|gb|AAB92394.1| putative reverse transcriptase [Drosophila subobscura]
          Length = 675

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 4   IPDTCDEHIYYQVDLTGTAEKSECQVYLTPD--------NSLSALQSIQNVSSSNPIARE 55
           +PD C     +Q ++    E   C   LTP+        +S +A++S+  +++S+     
Sbjct: 425 LPDHCS---VFQAEVIAIKEALSCLQELTPEATYINIYSDSQAAIKSLNAITTSSATVAN 481

Query: 56  IRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
            R  L +  + F +   WVP H  I GN  AD LA+  
Sbjct: 482 CRKSLHEMAYQFVISLIWVPGHQDIEGNCIADELARAG 519


>gi|376406958|gb|AFB39051.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406585|gb|AFB38716.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|327458229|gb|AEA76554.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISIADTTNQKTELQAILLALQDAGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 526 INKEK----VYLSWVPAHKGIGGNEQVDKLVSAGI 556


>gi|376408319|gb|AFB40273.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|441442658|gb|AGC32236.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 984

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VISLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 680 IQKEK----VYLTWVPAHKGIGGNEQVDKLVSNGI 710


>gi|31980407|dbj|BAC77729.1| Pol polyprotein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESGLVSQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|376407546|gb|AFB39579.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407057|gb|AFB39140.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406948|gb|AFB39042.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 619 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 678

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 679 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 709


>gi|37677905|gb|AAQ97570.1| Pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + SE +V +  D+  +L  +Q+  + S S  + + I  
Sbjct: 621 VVSLPDTTNQKTELQA-IRLALQDSELEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQ 679

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 711


>gi|376408427|gb|AFB40370.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|156254421|gb|ABU62700.1| RNase H [Human immunodeficiency virus 1]
          Length = 120

 Score = 45.1 bits (105), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 4   IPDTCDEH-----IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRN 58
           IPDT ++      IY  +  +G    SE  +      +L  +Q+  + S S  +++ I  
Sbjct: 29  IPDTTNQKTELQAIYLALQDSG----SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQ 84

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 85  LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 116


>gi|441442664|gb|AGC32240.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 984

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VISLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 680 IQKEK----VYLTWVPAHKGIGGNEQVDKLVSNGI 710


>gi|376408467|gb|AFB40406.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408369|gb|AFB40318.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407556|gb|AFB39588.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407107|gb|AFB39185.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406938|gb|AFB39033.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406654|gb|AFB38778.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406565|gb|AFB38698.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|326370667|gb|ADZ56445.1| pol protein [Human immunodeficiency virus 1]
          Length = 1018

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 636 VISLPDTTNQKTELQAIQLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 695

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+     ++ TWVP+H GI GNE+ D+L    +
Sbjct: 696 IKKD----XVYLTWVPAHKGIGGNEQVDKLVSAGI 726


>gi|441442647|gb|AGC32229.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 984

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VISLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 680 IQKEK----VYLTWVPAHKGIGGNEQVDKLVSNGI 710


>gi|441442623|gb|AGC32213.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442626|gb|AGC32215.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442629|gb|AGC32217.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442632|gb|AGC32219.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442635|gb|AGC32221.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442638|gb|AGC32223.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442641|gb|AGC32225.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442644|gb|AGC32227.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442650|gb|AGC32231.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442655|gb|AGC32234.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442661|gb|AGC32238.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 984

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VISLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 680 IQKEK----VYLTWVPAHKGIGGNEQVDKLVSNGI 710


>gi|378812675|gb|AFC60598.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++KNK    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKNK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|376408487|gb|AFB40424.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408417|gb|AFB40361.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407613|gb|AFB39639.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407087|gb|AFB39167.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407077|gb|AFB39158.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406810|gb|AFB38918.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|113171663|gb|ABI30934.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 711


>gi|57869655|gb|AAW57696.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEKL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IEKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|37677895|gb|AAQ97561.1| Gag protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + SE +V +  D+  +L  +Q+  + S S  + + I  
Sbjct: 621 VVSLPDTTNQKTELQA-IRLALQDSELEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQ 679

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 711


>gi|376408457|gb|AFB40397.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408447|gb|AFB40388.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408379|gb|AFB40327.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408309|gb|AFB40264.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407047|gb|AFB39131.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406888|gb|AFB38988.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406704|gb|AFB38823.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406684|gb|AFB38805.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406614|gb|AFB38742.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406555|gb|AFB38689.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406495|gb|AFB38635.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406485|gb|AFB38626.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408407|gb|AFB40352.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408349|gb|AFB40300.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407136|gb|AFB39211.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407037|gb|AFB39122.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407027|gb|AFB39113.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406898|gb|AFB38997.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406868|gb|AFB38970.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406858|gb|AFB38961.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406848|gb|AFB38952.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406820|gb|AFB38927.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406761|gb|AFB38874.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406664|gb|AFB38787.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408636|gb|AFB40558.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408389|gb|AFB40336.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407155|gb|AFB39228.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406928|gb|AFB39024.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406722|gb|AFB38839.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406694|gb|AFB38814.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406634|gb|AFB38760.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|376406644|gb|AFB38769.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|376406800|gb|AFB38909.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|376406968|gb|AFB39060.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408477|gb|AFB40415.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406997|gb|AFB39086.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406918|gb|AFB39015.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406790|gb|AFB38900.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406595|gb|AFB38725.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406575|gb|AFB38707.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406535|gb|AFB38671.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|256011598|gb|ACU55655.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IRKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|378812655|gb|AFC60580.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++KNK    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKNK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|376408437|gb|AFB40379.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376408339|gb|AFB40291.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376407165|gb|AFB39237.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406908|gb|AFB39006.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406674|gb|AFB38796.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1176

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406525|gb|AFB38662.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|373842410|gb|AEY77194.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+DK K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIDKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|376408397|gb|AFB40343.1| gag protein [Human immunodeficiency virus 1]
          Length = 1434

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 1052 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 1111

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 1112 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 1142


>gi|376406878|gb|AFB38979.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|376406713|gb|AFB38831.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|114431156|dbj|BAF31406.1| Pol [Human immunodeficiency virus 1]
          Length = 1004

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +W
Sbjct: 636 YAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSW 691

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 692 VPAHKGIGGNEQVDKLVSSGI 712


>gi|87083822|gb|ABD19484.1| pol protein [Simian immunodeficiency virus]
          Length = 1006

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  LQ+  + S S  + + I NL+ K K    ++ TWVP+H GI GNE+
Sbjct: 650 EVNIVTDSQYALGILQAQPDQSDSELVNQIIENLIKKEK----VYLTWVPAHKGIGGNEQ 705

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 706 VDKLVSSGI 714


>gi|339507679|gb|AEJ81251.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 562 VVSLPDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 622 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 652


>gi|255984898|gb|ACU46521.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 66  VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDXSESEJVSQIIEQL 125

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 126 IKKEK----VYLAWVPAHKGIGGNEQXDKLVSXGI 156


>gi|339507324|gb|AEJ81074.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 562 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L  + +
Sbjct: 622 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSKGI 652


>gi|339507653|gb|AEJ81238.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 587 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNE 642

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 643 QVDKLVSSGI 652


>gi|242825949|ref|XP_002488544.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712362|gb|EED11788.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 453

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 270 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPDPHKSSYASLKRYAKTQSLSAAQSQWEK 329

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P  P        ++ + RL +G  I+
Sbjct: 330 VAPQSYQDLEITTSPKRP-------GELQLNRLDLGHVIA 362


>gi|402243584|gb|AFQ41105.1| pol protein, partial [Simian immunodeficiency virus]
          Length = 297

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  L S  + S S P+ +EI NLL + + ++     WVP+H GI
Sbjct: 41  QDSEGEVNIVTDSQYALGILSSCPDQSES-PLVQEIINLLIQKEKIY---LNWVPAHKGI 96

Query: 81  AGNEEADRL 89
            GNEE D+L
Sbjct: 97  GGNEEVDKL 105


>gi|395758837|gb|AFN70497.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VISLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 680 IQKEK----VYLTWVPAHKGIGGNEQVDKLVSNGI 710


>gi|145207175|gb|ABP37936.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 45.1 bits (105), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVTITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 INKER----VYLTWVPAHKGIGGNEQVDKLVSTGI 711


>gi|88853342|emb|CAJ01215.1| gag-pol precursor [Human immunodeficiency virus 1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  ++S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 1076 SEVNIVTDSQYALGIIQAQPDISESEIVNQIIEKLIEKEK----VYLSWVPAHKGIGGNE 1131

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1132 QVDKLVSSGI 1141


>gi|343428557|emb|CBQ72087.1| related to Reverse transcriptase [Sporisorium reilianum SRZ2]
          Length = 2266

 Score = 45.1 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 68   SLHFTWVPSHVGIAGNEEADRLAKEA 93
            S+HF WVP HVG+AGNE ADRLA+  
Sbjct: 2058 SVHFVWVPGHVGVAGNELADRLARRG 2083


>gi|327458305|gb|AEA76592.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      ++  +Q+  + S S  +++ I  L
Sbjct: 466 IISITDTTNQKTELQAINLALQDSGSEVNIVTDSQYAIGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|256011200|gb|ACU55456.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  ++S S  + + I  L+ K K    ++  WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDISESELVNKIIEQLIKKEK----VYLAWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 701 QVDKLVSKGI 710


>gi|25166781|gb|AAN73574.1|AF484493_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1076 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1131

Query: 85   EADRLAKEAL 94
            + DRL    +
Sbjct: 1132 QVDRLVSSGI 1141


>gi|242827382|ref|XP_002488822.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712078|gb|EED11506.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 405

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 270 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPDPHKSSYASLKRYAKTQSLSAAQSQWEK 329

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P  P        ++ + RL +G  I+
Sbjct: 330 VAPQSYQDLEITTSPKRP-------GELQLNRLDLGHVIA 362


>gi|159031773|dbj|BAF91858.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 INKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|4539034|emb|CAB39916.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S+ + + I  L+ K+K    ++ TWVP+H GI GNE
Sbjct: 1076 SEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIQKDK----VYLTWVPAHKGIGGNE 1131

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1132 QVDKLVSSGI 1141


>gi|256011096|gb|ACU55404.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVXQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|71794624|emb|CAI28863.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1430

 Score = 45.1 bits (105), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++KNK    ++ +WVP+H GI GNE
Sbjct: 1073 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKNK----VYLSWVPAHKGIGGNE 1128

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1129 QVDKLVSNGI 1138


>gi|407920660|gb|EKG13846.1| hypothetical protein MPH_08978 [Macrophomina phaseolina MS6]
          Length = 606

 Score = 45.1 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 34/70 (48%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83
           K    V+     +L AL +    S    +   I  L+   +    + F WVPSH G+ GN
Sbjct: 359 KRRIAVFTDNQAALRALVTPSEQSGQYLLRSIIAKLIGLQQQGVLIEFHWVPSHQGVPGN 418

Query: 84  EEADRLAKEA 93
           EEADRLAK A
Sbjct: 419 EEADRLAKAA 428


>gi|242826378|ref|XP_002488629.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218712447|gb|EED11873.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1744

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68   SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
            S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 1561 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPDPHKSSYASLKRYAKTQSLSAAQSQWEK 1620

Query: 128  LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
            +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 1621 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIA 1653


>gi|284192167|gb|ADB82803.1| pol protein [Simian immunodeficiency virus]
          Length = 743

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 47  SSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            S NPI REI  L+   + V+     WVP+H GI GNE+ D+L  + +
Sbjct: 523 QSDNPIVREIIELMIGKEGVY---LGWVPAHKGIGGNEQVDKLVSQGI 567


>gi|376406624|gb|AFB38751.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIATDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|353247791|emb|CCA77176.1| hypothetical protein PIIN_11158 [Piriformospora indica DSM 11827]
          Length = 321

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 48/200 (24%)

Query: 10  EHIYYQVDLTGTAEKSEC---------QVYLTPDNSLSALQSIQNVSSS------NPIAR 54
           EH  ++ +L G A   +          ++ ++ DN  +A+Q ++NVS+       + I R
Sbjct: 30  EHTVHKGELVGIALGVQLAKMERIIIPRIKISLDNQ-AAIQGMENVSAKAGQHIIHKIHR 88

Query: 55  EIRNLLDKNKHVFSL----------------HFTWVPSHVGIAGNEEADRLAKEALSSNS 98
            I  L +  K    L                  TWVP H GI GN+ AD  AK+A++  S
Sbjct: 89  AIDKLRNDQKRRQELVEASDDETRINQSTQITLTWVPGHEGIKGNKAADEEAKKAITDGS 148

Query: 99  PPVNTIP----------INDFKRFFKSKILTTWNTEWANLA-DNKLRQIKEENRPWNPPF 147
               T+P          I+  ++  K     + + +W + A  N+ R I +E  P N   
Sbjct: 149 STAATLPPWTKDTLPQNISALRQELKLAARKSAHDKWKSSAWYNRTRPI-DETMPSNKYL 207

Query: 148 SMS----RKEQVSITRLRIG 163
            ++    R E  ++ +LR G
Sbjct: 208 QITDKLMRAEAAALIQLRTG 227


>gi|36365516|gb|AAQ86723.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|260533754|gb|ACX45151.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +W
Sbjct: 635 YAIYLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 691 VPAHKGIGGNEQVDKLVSSGI 711


>gi|36365552|gb|AAQ86755.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|327458227|gb|AEA76553.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSIADTTNQKTELQAILLALQDAGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 526 INKEK----VYLSWVPAHKGIGGNEQVDKLVSAGI 556


>gi|238635235|gb|ACR52531.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSTGI 711


>gi|55275157|gb|AAV49379.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSIPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGFIQAQPDKSESELVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 714


>gi|36365507|gb|AAQ86715.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|36365498|gb|AAQ86707.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|148745875|emb|CAK49326.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 964

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|256011412|gb|ACU55562.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K+K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKDK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|36365471|gb|AAQ86683.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|238635226|gb|ACR52523.1| pol protein [Human immunodeficiency virus 1]
 gi|238635245|gb|ACR52540.1| pol protein [Human immunodeficiency virus 1]
 gi|238635263|gb|ACR52556.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSTGI 711


>gi|38491648|gb|AAR22042.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVSQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|256010986|gb|ACU55349.1| pol protein [Human immunodeficiency virus 1]
          Length = 929

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 547 VISLTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEJVSQIIEQL 606

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 607 INKER----VYLTWVPAHKGIGGNEQVDKLVSTGI 637


>gi|441442725|gb|AGC32278.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLADTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|441442702|gb|AGC32264.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442704|gb|AGC32265.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442707|gb|AGC32267.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442710|gb|AGC32269.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442720|gb|AGC32275.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442731|gb|AGC32282.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|441442734|gb|AGC32284.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLADTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|391379585|gb|AFM44227.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|358376670|dbj|GAA93204.1| hypothetical protein AKAW_11316 [Aspergillus kawachii IFO 4308]
          Length = 452

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 35  NSLSALQSIQNVS--SSNPIAREIRNLLDKN-KHVFSLHFTWVPSHVGIAGNEEADRLAK 91
           +S+SALQ+I++ S  S   I R I  +  +N      +   WVP H    GN+EADRLAK
Sbjct: 92  DSMSALQAIRSPSNRSGRRIIRAILQVASRNDARGIPVRLQWVPRHCNDPGNDEADRLAK 151

Query: 92  EALS 95
           EA++
Sbjct: 152 EAVA 155


>gi|339507196|gb|AEJ81010.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 562 VISIPDTTNQKTELQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 622 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 652


>gi|170778911|gb|ACB36855.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDXSESELVSKIIEQLIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|441442728|gb|AGC32280.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLADTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|441442717|gb|AGC32273.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 985

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLADTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|376407017|gb|AFB39104.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSYGI 710


>gi|393225485|gb|EJD33472.1| hypothetical protein AURDEDRAFT_39389, partial [Auricularia
          delicata TFB-10046 SS5]
          Length = 126

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 54 REIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
          RE+ +LL + +H F LH  WVP H  IAGNE AD  AK A
Sbjct: 59 REVASLL-RVRHGFKLHIAWVPGHFDIAGNELADTHAKRA 97


>gi|192335060|gb|ACF04047.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 649 SEVNIVTDSQYALGIIQAKPDKSESELVSQIIEELIKKEK----IYLTWVPAHKGIGGNE 704

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 705 QVDKLVSAGI 714


>gi|387119182|gb|AFJ52171.1| pol protein, partial [Simian immunodeficiency virus]
          Length = 1011

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +QS  ++S S+ + + I  L+ K K    ++ +WVP+H GI
Sbjct: 650 QDSEVEVNIVTDSQYALGIIQSQPDISESDIVNQIIEQLVKKEK----IYLSWVPAHKGI 705

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 706 GGNEQIDKLVSAGI 719


>gi|325634798|gb|ADZ32752.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IRKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|256010733|gb|ACU55223.1| pol protein [Human immunodeficiency virus 1]
          Length = 766

 Score = 44.7 bits (104), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +QS  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 613 SEVNIVTDSQYALGIIQSQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 668

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 669 QVDKLVSSGI 678


>gi|156144946|gb|ABU53017.1| pol protein [Simian immunodeficiency virus]
          Length = 1011

 Score = 44.7 bits (104), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +QS  ++S S+ + + I  L+ K K    ++ +WVP+H GI
Sbjct: 650 QDSEVEVNIVTDSQYALGIIQSQPDISESDIVNQIIEQLVKKEK----IYLSWVPAHKGI 705

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 706 GGNEQIDKLVSAGI 719


>gi|25166801|gb|AAN73592.1|AF484495_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 1051 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESGLVSQIIEQL 1110

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 1111 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 1141


>gi|325634790|gb|ADZ32745.1| pol protein [Human immunodeficiency virus 1]
 gi|325634822|gb|ADZ32773.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IRKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|427783061|gb|JAA56982.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 11/134 (8%)

Query: 35  NSLSALQSIQNVSSSNP---IAREIRNLL-DKNKHVFSLHFTWVPSHVGIAGNEEADRLA 90
           +S +ALQS+ +     P   +  EIR+L+   ++    + F W+PSH G+ GNE AD  A
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAA 294

Query: 91  KEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEEN----RPWNPP 146
           + AL  +   V  +  +D     +   +   +     L  ++ +  ++ +    R ++ P
Sbjct: 295 RSALQGDKEEVIPLSRSDAAAMLR---IVAKDISQPTLHTSRSQNYRQHHLNALRRFDIP 351

Query: 147 FSMSRKEQVSITRL 160
             + R+E   + RL
Sbjct: 352 TGLQRREATLLCRL 365


>gi|325634806|gb|ADZ32759.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IRKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|306478351|gb|ADM89550.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHXGIGGNEQVDKLVSSGI 556


>gi|395455290|gb|AFN61990.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+I + S S  +++ I  
Sbjct: 621 VISLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAIPDKSESELVSQIIEQ 679

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|38491678|gb|AAR22069.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESEAVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|27311168|ref|NP_758887.1| pol protein [Simian immunodeficiency virus SIV-mnd 2]
 gi|26557008|gb|AAM08706.2|AF367411_2 pol protein [Simian immunodeficiency virus SIV-mnd 2]
          Length = 1010

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 47  SSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            S NPI REI  L+    H  +++  WVP+H GI GNE+ D+L    +
Sbjct: 679 QSDNPIVREIIELM---IHKEAVYLAWVPAHKGIGGNEQVDKLVSRGV 723


>gi|325634814|gb|ADZ32766.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IRKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|87137496|gb|ABD27963.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  LQ+  + S S  + + I NL+ K K    ++ TWVP+H GI GNE+
Sbjct: 46  EVNIVTDSQYALGILQAQPDQSDSELVNQIIENLIKKEK----VYLTWVPAHKGIGGNEQ 101

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 102 VDKLVSSGI 110


>gi|36365480|gb|AAQ86691.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|36365534|gb|AAQ86739.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|36365525|gb|AAQ86731.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|410025860|gb|AFV52249.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+DK K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIDKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407740497|gb|AFU33096.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P+T ++    + + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 617 VVSLPETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEEL 676

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 677 IKKDK----VYLSWVPAHKGIGGNEQVDKLVSSGI 707


>gi|395758857|gb|AFN70515.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|451170664|gb|AGF33049.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLADTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|238734222|gb|ACR55453.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++  PDT ++    Q + L      +E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSFPDTTNQKTELQAIHLALQDSGAEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|154270463|ref|XP_001536086.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150409890|gb|EDN05278.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 378

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 36  SLSALQSIQN-VSSSNP--IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKE 92
           +L AL S+   +SSS    + R I +L   N     + F W+P+H GI GNE AD+LAKE
Sbjct: 96  ALGALLSLGTPLSSSGQSILLRIIDSLERANSQGLDVEFYWIPAHHGIEGNELADKLAKE 155

Query: 93  A 93
           A
Sbjct: 156 A 156


>gi|22596575|gb|AAN03329.1|AF457090_2 pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVTITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 ITKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|36365489|gb|AAQ86699.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q  L    +   E  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|88809994|gb|ABD52331.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 559

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +QS  + S S  + + I  L
Sbjct: 465 VVSLTDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQSKPDKSESELVNQIIEQL 524

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 525 INKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 555


>gi|327458365|gb|AEA76622.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEK-SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q  L    +  SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAILLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSKIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K      ++ TWVP+H GI GNE+ D+L    +
Sbjct: 526 INKE----XVYLTWVPAHKGIGGNEKVDKLVSAGI 556


>gi|327458297|gb|AEA76588.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+I + S S  +++ I  L+ K K    ++  WVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSAGI 556


>gi|327458295|gb|AEA76587.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+I + S S  +++ I  L+ K K    ++  WVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSAGI 556


>gi|304347449|gb|ADM25287.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAILLALXDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 556


>gi|49574292|gb|AAT66817.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|74315733|gb|ABA02460.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ TWVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKDK----IYLTWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSNGI 708


>gi|451312324|gb|AGF34630.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+DK K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIDKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|410025850|gb|AFV52240.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+DK K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIDKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|242825272|ref|XP_002488406.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
            ATCC 10500]
 gi|218712224|gb|EED11650.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
            ATCC 10500]
          Length = 1732

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 12/133 (9%)

Query: 35   NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            +S  A +S + +++  P+    R  L   K   S+   WVP H  I  NE AD  AKE  
Sbjct: 1533 SSQEAFESFRTLAAGWPL----RERLPHTKSG-SVQIRWVPGHTKIPENEAADSAAKEGA 1587

Query: 95   SSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQ 154
            +S  P          KR  K++ L+   T W  +A    + ++    P +P        +
Sbjct: 1588 ASTPPSPYKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSPKHP-------GE 1640

Query: 155  VSITRLRIGPCIS 167
            + + RL +G  I+
Sbjct: 1641 LQLNRLDLGHIIA 1653


>gi|37221479|gb|AAQ89868.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  LQ+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 591 EVNIVTDSQYALGILQAKPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 646

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 647 VDKLVSAGI 655


>gi|29367081|gb|AAO22475.1| pol protein [Simian immunodeficiency virus]
          Length = 1011

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 47  SSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            S NPI REI  L+   + ++    +WVP+H GI GNE+ D+L  + +
Sbjct: 680 QSDNPIVREIIELMIGKEEIY---LSWVPAHKGIGGNEQIDKLVSKGI 724


>gi|242787321|ref|XP_002480983.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218721130|gb|EED20549.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 944

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 761 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 820

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 821 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIA 853


>gi|13095363|gb|AAK12244.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 562

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 468 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 527

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 528 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 558


>gi|49574294|gb|AAT66818.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|306416464|gb|ADM87079.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|256011472|gb|ACU55592.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q V L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAVXLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSSGI 711


>gi|37221483|gb|AAQ89870.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  LQ+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 591 EVNIVTDSQYALGILQAKPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 646

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 647 VDKLVSAGI 655


>gi|326370842|gb|ADZ56598.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLTWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|187371945|gb|ACD02840.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 702 QVDRLVSAGI 711


>gi|187371935|gb|ACD02831.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  LQ+  + S S  + + I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGILQAQPDKSESEIVNQIIEQLIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 702 QVDRLVSNGI 711


>gi|13095365|gb|AAK12245.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 562

 Score = 44.3 bits (103), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 468 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 527

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 528 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 558


>gi|49574260|gb|AAT66801.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|74835158|dbj|BAE44464.1| non-LTR retrotransposon CATS [Bombyx mori]
          Length = 809

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 35  NSLSALQSIQNVSSSNPIAREI-RNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
           ++ S L  I +  S +P+A +I +NL    +    +   W+ +H+G+ GNE AD LAKEA
Sbjct: 589 DARSTLDVIASGESLHPLAFKITKNLKTITERNQEIRLFWIKAHIGLEGNERADVLAKEA 648

Query: 94  LSS--NSPPVNTIPINDFKRFFKSKILTTWNTEW 125
             S    P  +  P++  KR  +   +  W+  +
Sbjct: 649 ALSLKCKPHYDRCPVSFAKRTIRQGSVDEWDLRY 682


>gi|312601828|gb|ADQ92472.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|255984958|gb|ACU46551.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 19/94 (20%)

Query: 16  VDLTGTA-EKSECQ-VYLTPDNS-------------LSALQSIQNVSSSNPIAREIRNLL 60
           V LTGT  +K+E Q +YL   +S             L  +Q+  + S S  +++ I  L+
Sbjct: 67  VSLTGTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLI 126

Query: 61  DKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 127 KKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 156


>gi|13095361|gb|AAK12243.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 562

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 468 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 527

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 528 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 558


>gi|344311621|gb|AEN04333.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 562

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  LQ+  + S S  + + I  L+ K +    ++ TWVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGILQAQPDRSESEIVXQIIEELIKKER----VYLTWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|302594694|gb|ADL59535.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 120

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +       L  +Q+  + S S  + R I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 51  SEVNIVTDSQYGLGIIQAQPDRSESEIVNRIIEKLIEKDK----VYLSWVPAHKGIGGNE 106

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 107 QVDKLVSTGI 116


>gi|255708281|dbj|BAH96497.1| Pol [Human immunodeficiency virus 1]
          Length = 1005

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K+K    ++  WVP+H GI GNE
Sbjct: 648 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLINKDK----VYLAWVPAHKGIGGNE 703

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 704 QVDKLVSSGI 713


>gi|328834366|gb|AEB52783.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + R I  L++K +    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDSSESEVVNRIIEKLIEKER----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|159031761|dbj|BAF91852.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|13095417|gb|AAK12264.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|159031757|dbj|BAF91850.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|49574296|gb|AAT66819.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|24754005|gb|AAN64123.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L     +SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSESEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|383859911|ref|XP_003705435.1| PREDICTED: armadillo repeat-containing protein 4-like [Megachile
           rotundata]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 12/140 (8%)

Query: 35  NSLSALQSIQN---VSSSNPIAREIRNLLDKNKHVFS----LHFTWVPSHVGIAGNEEAD 87
           NS S L+++        S  + +EI+  L+  + + S    + F W+PS+ GI  NE AD
Sbjct: 782 NSFSVLEALDGRVFCQRSFSLLKEIKEELNAFETLASPGRRIAFVWIPSYRGILNNERAD 841

Query: 88  RLAKEALSSNSPPVNTIPINDFKRFFKSKI----LTTWNTEWANLADNKLRQIKEENR-P 142
             AK A + +      +P  DF    K  +    ++ W  E A+   +      E NR P
Sbjct: 842 AAAKLASNISGEFNFKVPYTDFSPILKDIMWKNSISRWLGEAASKGSSYFNTYFEPNRKP 901

Query: 143 WNPPFSMSRKEQVSITRLRI 162
           W    ++ R+  V + R R+
Sbjct: 902 WFFNRNLPRRTTVWVNRYRL 921


>gi|159031759|dbj|BAF91851.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|114431076|dbj|BAF31334.1| Pol [Human immunodeficiency virus 1]
 gi|114431086|dbj|BAF31343.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDNS--LSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+   L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI
Sbjct: 642 QDSESEVNIVTDSQYVLGIIQAQPDKSESELVSQIIEKLIGKDK----VYLSWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSSGI 711


>gi|49574262|gb|AAT66802.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHTGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|159031769|dbj|BAF91856.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|74315723|gb|ABA02451.1| pol protein [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    + + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 617 IITIQDTTNQKTELHAIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQL 676

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 677 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSRGI 707


>gi|327458315|gb|AEA76597.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLXDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSXGI 556


>gi|327458303|gb|AEA76591.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           I DT ++    Q ++L      SE  +      +J  +Q+  + S S  +++ I  L+ K
Sbjct: 469 ITDTTNQKTELQAINLALQDSGSEVNIVTDSQYAJGIIQAQPDKSESELVSQIIEQLIKK 528

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 529 EK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|37221358|gb|AAQ89808.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  B S S  +++ I  L
Sbjct: 565 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPBKSESELVSQIIEQL 624

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 625 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 655


>gi|14289994|gb|AAK59181.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +W
Sbjct: 635 YAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEELIQKDK----VYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 691 VPAHKGIGGNEQVDKLVSRGI 711


>gi|25166851|gb|AAN73637.1|AF484500_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 1051 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 1110

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 1111 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 1141


>gi|25166731|gb|AAN73529.1|AF484488_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1432

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 1050 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 1109

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 1110 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 1140


>gi|260533622|gb|ACX45033.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P+T ++    + + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 617 VISLPETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKL 676

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K+K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 677 IEKDK----VYLSWVPAHKGIGGNEQVDKLVSSGI 707


>gi|306478125|gb|ADM89437.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 44.3 bits (103), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+I + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 487 QDSELEVNIVTDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 542

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 543 GGNEQVDKLVSAGI 556


>gi|37496483|emb|CAD48441.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1495

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +QS  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1138 SEVNIVTDSQYALGIIQSQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1193

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1194 QVDKLVSNGI 1203


>gi|341571469|gb|AEK79331.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  ++S S  + + I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDISESEIVNQIIEQLIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|325637104|gb|ADZ34716.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  V      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIRLALQDSGSEVNVVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|158967389|gb|ABW86734.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 702 QVDKLVSKGI 711


>gi|159031775|dbj|BAF91859.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|395455333|gb|AFN62028.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S+S  + + I  L+ K K    ++ +W
Sbjct: 635 YAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSNSEIVNQIIEELIKKEK----IYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 691 VPAHKGIGGNEQVDKLVSAGI 711


>gi|256010813|gb|ACU55263.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ IPDT ++    Q  +    + S  +V +  D+  +L  LQ+  + S S  +   I  
Sbjct: 621 VVSIPDTTNQKTELQA-IXLALQDSGLEVNIVTDSQYALGILQAQPDKSESELVNEIIEQ 679

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 711


>gi|256252240|dbj|BAH97497.1| Pol [Human immunodeficiency virus 1]
          Length = 1008

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 629 LTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQLIKK 688

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L  + +
Sbjct: 689 EK----VYLAWVPAHKGIGGNEQVDKLVSKGI 716


>gi|242763273|ref|XP_002340543.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218723739|gb|EED23156.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 241

 Score = 44.3 bits (103), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           +S  A +S + +++  P+    R  L   K   S+   WVP H  I  NE AD  AKE  
Sbjct: 30  SSQEAFESFRTLAAGWPL----RERLPHTKSG-SVQIRWVPGHTKIPENEAADSAAKEGA 84

Query: 95  SSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQ 154
           +S  P          KR  K++ L+   T W  +A    + ++    P        R  +
Sbjct: 85  ASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSP-------KRPGE 137

Query: 155 VSITRLRIGPCIS 167
           + + RL +G  I+
Sbjct: 138 LQLNRLNLGHIIA 150


>gi|255984240|gb|ACU46192.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 66  VVSLPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEJVSQIIEEL 125

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ DRL    +
Sbjct: 126 IKKEK----VYLAWVPAHKGIGGNEQVDRLVSTGI 156


>gi|256252250|dbj|BAH97506.1| Pol [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 623 LTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQLIKK 682

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L  + +
Sbjct: 683 EK----VYLAWVPAHKGIGGNEQVDKLVSKGI 710


>gi|256011016|gb|ACU55364.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVSDSQYALGIIQAQPDKSESELVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 714


>gi|159031767|dbj|BAF91855.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|339507254|gb|AEJ81039.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 562 VVSIPDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 622 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 652


>gi|338224553|gb|AEI88160.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEAVNQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 702 QVDRLVSAGI 711


>gi|306478103|gb|ADM89426.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 44.3 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+I + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 487 QDSELEVNIVTDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 542

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 543 GGNEQVDKLVSAGI 556


>gi|289469866|gb|ADC96588.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 466 VVSITDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDXSESELVNQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|256010913|gb|ACU55313.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L       E  +      +L  +Q+I + S S  +++ I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAIPDKSESELVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  W P+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWXPAHKGIGGNEQVDKLVSTGI 711


>gi|159031763|dbj|BAF91853.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 44.3 bits (103), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|331245769|ref|XP_003335520.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1463

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 41/83 (49%)

Query: 18   LTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSH 77
            L  T ++S   +++     +S  ++ ++      I  +I + +        + F W P H
Sbjct: 1213 LCSTLDRSNIMIFMDNQGVISRTKNPRSPKPGQWIFEKIDSSISLLPEGLGISFVWCPGH 1272

Query: 78   VGIAGNEEADRLAKEALSSNSPP 100
            V I GNE AD+LA+EAL S S P
Sbjct: 1273 VNIPGNEMADQLAREALESPSAP 1295


>gi|187371917|gb|ACD02815.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 700 QVDRLVSAGI 709


>gi|376407594|gb|AFB39622.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + + K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKREK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|256011278|gb|ACU55495.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+I + S S  +++ I  L+ K K    ++  WVP+H GI GNE+
Sbjct: 647 EVNIVTDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQ 702

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 703 VDKLVSAGI 711


>gi|7452900|emb|CAB86366.1| POL protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 702 QVDKLVSKGI 711


>gi|407740474|gb|AFU33076.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|325637122|gb|ADZ34731.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  V      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNVVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|238734285|gb|ACR55508.1| pol protein [Human immunodeficiency virus 1]
          Length = 1018

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 636 VVSLTDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 695

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 696 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 726


>gi|427783467|gb|JAA57185.1| Putative tick transposon [Rhipicephalus pulchellus]
          Length = 628

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 67  FSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTT 120
            SLH  W+PSHVGIAGNEEAD  AK A  S++P  N + ++D+ R    ++L T
Sbjct: 454 LSLH--WLPSHVGIAGNEEADAAAKAAHHSDTPVTNAVALSDYSRQRLRQLLPT 505


>gi|407740450|gb|AFU33055.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|407740434|gb|AFU33041.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|359373601|gb|AEV42637.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83
           +SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GN
Sbjct: 645 RSEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKEK----VYLSWVPAHKGIGGN 700

Query: 84  EEADRLAKEAL 94
           E+ D+L    +
Sbjct: 701 EQVDKLVSSGI 711


>gi|242825777|ref|XP_002488508.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
           10500]
 gi|218712326|gb|EED11752.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
           10500]
          Length = 466

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 12/125 (9%)

Query: 12  IYYQVDLTGTAEKSECQVYLTPD--------NSLSALQSIQNV--SSSNPIAREIRNLLD 61
           IYY + L       E QV L           +S+SALQ+I N    S   I + ++    
Sbjct: 180 IYYAISLV-LKIAMENQVILVGQQEPATILSDSMSALQAISNTRNKSGQRIIQAVQQAAQ 238

Query: 62  KNK-HVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTT 120
           + K     L   W+P H    GNE A+RLAKEA+S +        ++  K F +++I   
Sbjct: 239 ELKARGIPLCLQWMPGHCDNPGNEAANRLAKEAVSLDKEHPFQHLLSREKGFIRNRIQED 298

Query: 121 WNTEW 125
           W   W
Sbjct: 299 WEQGW 303


>gi|38679133|gb|AAR26388.1| pol protein [Human immunodeficiency virus 1]
          Length = 1009

 Score = 44.3 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V++  D+  +L  +Q+  + S S  + + I  L+ K K    ++ TWVP+H GI
Sbjct: 648 QDSESEVHIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKEK----VYITWVPAHKGI 703

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 704 GGNEQVDKLVSSGI 717


>gi|24753973|gb|AAN64096.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
          Length = 1189

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 29   VYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADR 88
            +Y   D S +A++++ + +S + +    R  +++   V S++  WVP H  IAGNE AD 
Sbjct: 974  IYFCSD-SQAAIKALASANSRSKLVIACRTQIEELNSVNSVNLVWVPGHSSIAGNELADE 1032

Query: 89   LAKEALSSNS-PPVNTIPIN 107
            LA++  S +   P   IPI+
Sbjct: 1033 LARDGASHDFIGPEPAIPIS 1052


>gi|60652074|gb|AAX33144.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSIADTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|407740466|gb|AFU33069.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|407740442|gb|AFU33048.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407740481|gb|AFU33082.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407740489|gb|AFU33089.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|407915534|gb|EKG09113.1| hypothetical protein MPH_13896 [Macrophomina phaseolina MS6]
          Length = 288

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSS----------NSPPVNTIPINDFKRFFKSKI 117
           S+ F WVPSH G+ GNEEAD+LAK A               P V    +   K+     +
Sbjct: 82  SIKFHWVPSHRGVPGNEEADKLAKAAAQERRTLEAERCMTGPHVQPSLVAALKQAINQAV 141

Query: 118 LTTWNTEWAN 127
           +  W   W +
Sbjct: 142 MDEWKQLWKD 151


>gi|224925783|gb|ACN69506.1| pol protein [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ TWVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEK----VYLTWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|407740458|gb|AFU33062.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|328834013|gb|AEB52470.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 22  AEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIA 81
           A +SE  +      +L  +Q+  + S S  + + I  L+ K +    ++ +WVP+H GI 
Sbjct: 640 ASRSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKER----IYLSWVPAHKGIG 695

Query: 82  GNEEADRLAKEAL 94
           GNE+ D+L  + +
Sbjct: 696 GNEQVDKLVSKGI 708


>gi|327458251|gb|AEA76565.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++   +Q + L      +E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTEFQAIYLALQDSGAEVNIVTDSQYALGIIQATPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 INKER----VYLAWVPAHKGIGGNEQVDKLVSTGI 556


>gi|260533664|gb|ACX45070.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGVIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|256011184|gb|ACU55448.1| pol protein [Human immunodeficiency virus 1]
          Length = 1012

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 630 VVSINDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEKL 689

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 690 INKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 720


>gi|90903153|gb|ABE02165.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 13/99 (13%)

Query: 1   MLGIPDTCDEH-----IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIARE 55
           ++ +P+T ++      IY  +  +G    SE  +      +L  +Q+  + S S  + + 
Sbjct: 621 VVSLPETTNQKAELHAIYLALQESG----SEVNIVTDSQYALGIIQAQPDRSESELVNQI 676

Query: 56  IRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           I  L++K+K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 677 IEKLIEKDK----IYLSWVPAHKGIGGNEQIDKLVSNGI 711


>gi|38142451|gb|AAN18271.2| pol protein [Simian immunodeficiency virus]
          Length = 1002

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDNS--LSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE QV +  D+   L  +QS  + S S  + + I  L+ K+K    ++ +WVP+H GI
Sbjct: 641 QDSEQQVNIVTDSQYVLGIIQSQPDHSESELVNQIIEELIKKDK----VYLSWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSSGI 710


>gi|376406475|gb|AFB38617.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S   ++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELFSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|295314109|gb|ADF97366.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 650 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEK----VYLSWVPAHKGIGGNE 705

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 706 QVDRLVSAGI 715


>gi|256011394|gb|ACU55553.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQDSASEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|256252527|dbj|BAH97641.1| Pol [Human immunodeficiency virus 1]
 gi|256252537|dbj|BAH97650.1| Pol [Human immunodeficiency virus 1]
          Length = 999

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ TWVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEK----VYLTWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSSGI 707


>gi|148745863|emb|CAK49320.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 963

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSDSELVNKIIEKLIEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|55275167|gb|AAV49388.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSIPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K +    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IQKER----VYLAWVPAHKGIGGNEQVDKLVSSGI 714


>gi|242827316|ref|XP_002488808.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712064|gb|EED11492.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P          KR  K++ L+   ++W  
Sbjct: 174 SIQIRWVPGHAKIPENEAADLTAKEGAASTPPAPQKSSYASLKRHAKTQSLSAAQSQWQK 233

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 234 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGRIIA 266


>gi|74273373|gb|ABA01365.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 714


>gi|327458235|gb|AEA76557.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +QS  + S S  + + I  L
Sbjct: 466 VVSLTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQSQPDKSESELVNQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 INKEK----IYLAWVPAHKGIGGNEQVDKLVSNGI 556


>gi|55275127|gb|AAV49352.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|37934302|gb|AAO84273.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 578

 Score = 44.3 bits (103), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEIVNQVIEKLIEKDK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|443700141|gb|ELT99252.1| hypothetical protein CAPTEDRAFT_193728 [Capitella teleta]
          Length = 337

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 21/28 (75%)

Query: 71 FTWVPSHVGIAGNEEADRLAKEALSSNS 98
          F W+PSH GI GNE AD LAK +LSS S
Sbjct: 46 FLWIPSHCGIQGNEAADALAKASLSSQS 73


>gi|328834506|gb|AEB52908.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESQLVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|326370705|gb|ADZ56479.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|74273381|gb|ABA01372.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 714


>gi|333102047|gb|AEF14225.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSEAEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSSGI 711


>gi|255708291|dbj|BAH96506.1| Pol [Human immunodeficiency virus 1]
          Length = 1005

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 2   LGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLL 60
           + I DT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L+
Sbjct: 624 ISITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 683

Query: 61  DKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           +K+K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 NKDK----VYLAWVPAHKGIGGNEQVDKLVSSGI 713


>gi|113706907|gb|ABI36566.1| pol protein [Human immunodeficiency virus 1]
          Length = 768

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      +E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVTLTDTTNQKTELQAINLALQDSGAEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ DRL    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDRLVSAGI 711


>gi|55275137|gb|AAV49361.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency virus 1]
          Length = 1010

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 23  EKSECQVYLTPDNSLS-ALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIA 81
           + S+ QV +  D+  +  + S Q   S +PI ++I   L K + V+    TWVP+H GI 
Sbjct: 639 QDSKEQVNIVTDSQYALGIISSQPTQSDSPIVQQIIEELTKKEQVY---LTWVPAHKGIG 695

Query: 82  GNEEADRLA 90
           GNE+ D+L 
Sbjct: 696 GNEKIDKLV 704


>gi|256011608|gb|ACU55660.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|256252547|dbj|BAH97659.1| Pol [Human immunodeficiency virus 1]
          Length = 1009

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLL 60
           ++ + +T ++       L    +  E    +T    +  + S Q   S +PI ++I   L
Sbjct: 617 VIKLEETTNQKAELMAVLIALQDSKEAVNIVTDSQYVLGIISAQPTQSDSPIVQQIIEEL 676

Query: 61  DKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K + V+    TWVP+H GI GNE+ D+L  + +
Sbjct: 677 TKKEQVY---LTWVPAHKGIGGNEKIDKLVSQDI 707


>gi|322712945|gb|EFZ04518.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
          Length = 721

 Score = 43.9 bits (102), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 19/97 (19%)

Query: 4   IPDTCDEHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKN 63
           IPD  D  I   +D    A    C      D+S SA    Q +++++             
Sbjct: 626 IPDASDNPIVVCLDNLAAAT---CLRGTASDSSQSAFLKFQEIAAAHG------------ 670

Query: 64  KHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPP 100
               S+H  W+P H  I GNE+AD LAK   +   PP
Sbjct: 671 ----SIHVRWIPGHTDIPGNEQADSLAKAGCALPEPP 703


>gi|256252557|dbj|BAH97668.1| Pol [Human immunodeficiency virus 1]
          Length = 1009

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLL 60
           ++ + +T ++       L    +  E    +T    +  + S Q   S +PI ++I   L
Sbjct: 617 VIKLEETTNQKAELMAVLIALQDSKEAVNIVTDSQYVLGIISAQPTQSDSPIVQQIIEEL 676

Query: 61  DKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K + V+    TWVP+H GI GNE+ D+L  + +
Sbjct: 677 TKKEQVY---LTWVPAHKGIGGNEKIDKLVSQDI 707


>gi|13095069|gb|AAK12125.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSITDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    +H  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VHLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|74273347|gb|ABA01343.1| pol protein [Human immunodeficiency virus 1]
 gi|74273356|gb|ABA01351.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 714


>gi|306478001|gb|ADM89375.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|306477475|gb|ADM89112.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 547 QVDRLVSTGI 556


>gi|242789181|ref|XP_002481309.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218717897|gb|EED17317.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 258

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P          KR  K++ L+   ++W  
Sbjct: 138 SIQIRWVPGHAKIPENEAADLAAKEGAASTPPAPQKSSYASLKRHAKTQSLSAAQSQWQK 197

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCI 166
           +A    + ++    P  P        ++ + RL +G  I
Sbjct: 198 VAPQSYQDLEITTSPKRP-------RELQLNRLDLGRII 229


>gi|427798823|gb|JAA64863.1| Hypothetical protein, partial [Rhipicephalus pulchellus]
          Length = 97

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 30/65 (46%)

Query: 73  WVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK 132
           WV  H  I GN  AD+LA  A  + +     IP+ D K F K K    W + W     NK
Sbjct: 9   WVLGHHKIQGNVLADQLAASAHENTADTSIPIPVLDLKPFLKRKPRDYWQSSWERHTQNK 68

Query: 133 LRQIK 137
           L  IK
Sbjct: 69  LNVIK 73


>gi|13540173|gb|AAK29340.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++LT     SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VISITDTTNQKTELQAINLTLQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++ +WVP+H GI GNE+  +L    +
Sbjct: 681 INKEK----VYLSWVPAHKGIGGNEQVHKLVSSGI 711


>gi|71794596|emb|CAI28836.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1430

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 14   YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
            Y + L      SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +W
Sbjct: 1062 YAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKAK----VYLSW 1117

Query: 74   VPSHVGIAGNEEADRLAKEALSS 96
            VP+H GI GNE+ D+L    + +
Sbjct: 1118 VPAHKGIGGNEQVDKLVSSGIRT 1140


>gi|376406987|gb|AFB39077.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT  +    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTSQKTELQAINLALQDSGSEVNIVTDSRYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|328834120|gb|AEB52565.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +     ++L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 650 SEVNIVTDSQDALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNE 705

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 706 QIDKLVSSGI 715


>gi|306416338|gb|ADM87016.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIVQAQPDRSESEVVSQIIEELIKKDK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|260533645|gb|ACX45053.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|55735986|gb|AAV59715.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLMDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSSGI 711


>gi|284192169|gb|ADB82804.1| pol protein [Simian immunodeficiency virus]
          Length = 749

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 47  SSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            S NPI REI  L+ + + V+     WVP+H GI GNE  D+L  + +
Sbjct: 521 QSDNPIVREIIELMIQKEGVY---LAWVPAHKGIGGNEHIDKLVSKGI 565


>gi|119507999|dbj|BAF42398.1| Pol [Human immunodeficiency virus 1]
 gi|119508009|dbj|BAF42407.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L++K++    ++ +W
Sbjct: 635 YAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDR----VYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 691 VPAHKGIGGNEQVDKLVSSGI 711


>gi|57869543|gb|AAW57596.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESGLVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|25166679|gb|AAN73483.1|AF484482_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 1076 SEVNIVTDSQYALGIIQAQPDKSESELVSKIIERLIGKDK----VYLSWVPAHKGIGGNE 1131

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1132 QVDKLVSTGI 1141


>gi|327458203|gb|AEA76541.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|306477987|gb|ADM89368.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|306477985|gb|ADM89367.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|159031771|dbj|BAF91857.1| polyprotein [Human immunodeficiency virus 1]
          Length = 539

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 437 VVSMXDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 496

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 497 IXKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 527


>gi|42592274|emb|CAF28998.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 565

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI GNE+
Sbjct: 473 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGNEQ 528

Query: 86  ADRLAKEALS 95
            D+L  + +S
Sbjct: 529 VDKLVSQGIS 538


>gi|306477983|gb|ADM89366.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|306416314|gb|ADM87004.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + DRL    +
Sbjct: 547 QVDRLVSSGI 556


>gi|294992466|gb|ACU55388.2| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  ++S S  + + I  L+ K K     +  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDISESELVNKIIEQLIKKEKX----YLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 702 QVDKLVSKGI 711


>gi|306477989|gb|ADM89369.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|256010787|gb|ACU55250.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S +  + + I  L++K+K    ++ +W
Sbjct: 635 YAIYLALQDSGSEVNIVTDSQYALGIIQAHPDQSEAETVNQIIEKLIEKDK----VYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 691 VPAHKGIGGNEQVDKLVSNGI 711


>gi|222428404|gb|ACM50053.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEEL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 716


>gi|159031787|dbj|BAF91865.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMXDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 495 IXKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 525


>gi|13095071|gb|AAK12126.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSITDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    +H  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VHLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|13891866|gb|AAG50312.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+  + S S  +++ I  
Sbjct: 466 VVSLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQ 524

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 525 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 556


>gi|306477967|gb|ADM89358.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|13891870|gb|AAG50314.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+  + S S  +++ I  
Sbjct: 466 VVSLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQ 524

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 525 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 556


>gi|327458341|gb|AEA76610.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|306477999|gb|ADM89374.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|306477981|gb|ADM89365.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|113171671|gb|ABI30941.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTPNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSTGI 711


>gi|22596243|gb|AAN03034.1|AF457053_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|25166659|gb|AAN73465.1|AF484480_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1    MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
            ++ +PDT ++    + ++L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 1051 VVSLPDTTNQKTELHAINLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 1110

Query: 60   LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 1111 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 1141


>gi|13891902|gb|AAG50330.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+  + S S  +++ I  
Sbjct: 466 VVSLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQ 524

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 525 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 556


>gi|306477977|gb|ADM89363.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|306477973|gb|ADM89361.1| pol protein [Human immunodeficiency virus 1]
 gi|306477975|gb|ADM89362.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|46254787|gb|AAS86325.1| pol protein [Simian immunodeficiency virus]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 31  LTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLA 90
           +T    +  + S Q  SS +PI  +I  LL     V+    TWVP H GI GN E DRL 
Sbjct: 398 VTDSQYVLGIISAQPTSSDHPIVEDIIQLLLGKDQVY---ITWVPGHKGIGGNVEVDRLV 454


>gi|319429318|gb|ADV56934.1| pol protein [Human immunodeficiency virus 1]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 590 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 645

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 646 QVDKLVSNGI 655


>gi|288558533|dbj|BAI68323.1| polyprotein [Human immunodeficiency virus 1]
          Length = 328

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y V L      SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +W
Sbjct: 231 YAVHLALQDSGSEVNIVTDSQYALGIIQAQPDRSDSELVNQIIEELIKKDK----VYLSW 286

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 287 VPAHKGIGGNEQVDKLVSSGI 307


>gi|238734158|gb|ACR55396.1| pol protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDSSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|242825693|ref|XP_002488491.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712309|gb|EED11735.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 360

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           +S  A +S + +++  P+    R  L   K   S+   WVP H  I  NE AD  AKE  
Sbjct: 46  SSQEAFESFRTLAAGWPL----RERLPHTKSG-SVQIRWVPGHTKIPENEAADSAAKEGA 100

Query: 95  SSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQ 154
           +S  P          KR  K++ L+   T W  +A    + ++    P        R  +
Sbjct: 101 ASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSP-------KRPGE 153

Query: 155 VSITRLRIGPCIS 167
           + + RL +G  I+
Sbjct: 154 LQLNRLDLGHIIA 166


>gi|190411392|gb|ACE78459.1| pol protein [Human immunodeficiency virus 1]
 gi|190411402|gb|ACE78468.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S+ +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESDLVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|37682540|gb|AAQ98226.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAHPDKSESELVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 711


>gi|13891906|gb|AAG50332.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+  + S S  +++ I  
Sbjct: 466 VVSLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQ 524

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 525 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 556


>gi|325634605|gb|ADZ32584.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S+ + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSAGV 709


>gi|306477979|gb|ADM89364.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|238635281|gb|ACR52572.1| pol protein [Human immunodeficiency virus 1]
 gi|238635315|gb|ACR52602.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  ++S S  + + I  L+ K K    ++  WVP+H GI
Sbjct: 647 QDSESEVNIVTDSQYALGIIQAQPDISESAIVNQIIEQLIKKEK----VYLAWVPAHKGI 702

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 703 GGNEQIDKLVSSGI 716


>gi|190411412|gb|ACE78477.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S+ +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESDLVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|429249600|gb|AFZ77844.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEAVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|407737179|gb|AFU30331.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +W
Sbjct: 639 YAIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEK----VYLSW 694

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 695 VPAHKGIGGNEQVDKLVSSGI 715


>gi|407737169|gb|AFU30323.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +W
Sbjct: 639 YAIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEK----VYLSW 694

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 695 VPAHKGIGGNEQVDKLVSSGI 715


>gi|256011236|gb|ACU55474.1| pol protein [Human immunodeficiency virus 1]
          Length = 1009

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 627 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 686

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 687 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 717


>gi|94959100|gb|ABF47490.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----IYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|376408329|gb|AFB40282.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  +   S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRGESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|429249638|gb|AFZ77863.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEAVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|885605|gb|AAC55682.1| reverse transcriptase, partial [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSVTDTTNQKTKLQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|410585790|gb|AFV74176.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  LQ+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGILQAQPDRSESEVVNQIIEELIKKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407734869|gb|AFU28390.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407734874|gb|AFU28394.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|376406505|gb|AFB38644.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  +   S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRGESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|242784380|ref|XP_002480375.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
 gi|218720522|gb|EED19941.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
          Length = 728

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 545 SIQIRWVPGHAKIPENEAADLAAKEGAASIPPDPHKSSYASLKRYAKTQSLSAAQSQWEK 604

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 605 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIA 637


>gi|209156856|gb|ACI39911.1| pol protein [Human immunodeficiency virus 1]
          Length = 1009

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K K    ++ +WVP+H GI GNE
Sbjct: 652 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLINKEK----VYLSWVPAHKGIGGNE 707

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 708 QVDKLVSSGI 717


>gi|110809916|gb|ABG91347.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +W
Sbjct: 635 YAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEQLIRKEK----VYLSW 690

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L  + +
Sbjct: 691 VPAHKGIGGNEQVDKLVSKGI 711


>gi|11385870|gb|AAG34999.1| pol protein [Human immunodeficiency virus 1]
          Length = 514

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 420 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDTSESELVNQIIEQL 479

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 480 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 510


>gi|74273452|gb|ABA01435.1| pol protein [Human immunodeficiency virus 1]
 gi|74273461|gb|ABA01443.1| pol protein [Human immunodeficiency virus 1]
 gi|74273471|gb|ABA01452.1| pol protein [Human immunodeficiency virus 1]
 gi|74273481|gb|ABA01461.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|407737184|gb|AFU30335.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +W
Sbjct: 639 YAIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEK----VYLSW 694

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 695 VPAHKGIGGNEQVDKLVSSGI 715


>gi|391379436|gb|AFM44094.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 816

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  LQ+  + S S  +++ I  L
Sbjct: 434 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGILQAQPDKSESELVSQIIEQL 493

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 494 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 524


>gi|325634612|gb|ADZ32590.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S+ + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSAGV 709


>gi|407737164|gb|AFU30319.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +W
Sbjct: 639 YAIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEK----VYLSW 694

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 695 VPAHKGIGGNEQVDKLVSSGI 715


>gi|363584175|gb|AEW27699.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDSSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|255984750|gb|ACU46447.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 66  VVSITDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 125

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 126 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 156


>gi|238635298|gb|ACR52587.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  ++S S  + + I  L+ K K    ++  WVP+H GI
Sbjct: 647 QDSESEVNIVTDSQYALGIIQAQPDISESAIVNQIIEQLIKKEK----VYLAWVPAHKGI 702

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 703 GGNEQIDKLVSSGI 716


>gi|170778935|gb|ACB36867.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K+K    ++  WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQLIQKDK----VYLAWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSTGI 556


>gi|3378123|gb|AAC28446.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIEKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|325634619|gb|ADZ32596.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S+ + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSAGV 709


>gi|38679150|gb|AAR26403.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|49574402|gb|AAT66869.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  LL K K    ++  WVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESEVVSQIIEELLKKEK----VYLAWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L +  +
Sbjct: 548 VDKLVRTGI 556


>gi|29470219|gb|AAO74590.1| pol protein [synthetic construct]
          Length = 727

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|25166921|gb|AAN73700.1|AF484507_1 truncated gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1272

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1072 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 1127

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1128 QVDKLVSSGI 1137


>gi|407738286|gb|AFU31255.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI
Sbjct: 642 QDSESEVNIVTDSQYALGIIQAQPDRSDSEVVNQIIEELIKKDK----VYLSWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSSGI 711


>gi|407734859|gb|AFU28382.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|407915231|gb|EKG08948.1| hypothetical protein MPH_14100 [Macrophomina phaseolina MS6]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)

Query: 35  NSLSALQSIQN--VSSSNPIAREIRNLLDK--NKHVFSLHFTWVPSHVGIAGNEEADRLA 90
           +S SALQS+      S   + ++I   LDK   + V  +   WVP+H G+ GNE A++LA
Sbjct: 131 DSKSALQSLLRPRQRSGQVVLKQILETLDKMQRRKVPVVQLRWVPAHAGVPGNERANKLA 190

Query: 91  ------KEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKL 133
                  +AL  +   + ++ + D KR     I   W  E   + + +L
Sbjct: 191 LQATEPDKALPDSGVRLKSVALADVKR----AISRAWAKELDGIKEGRL 235


>gi|388332050|gb|AFK29871.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q ++L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVTLPDTTNQKTELQAINLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQIDKLVSAGI 711


>gi|325634589|gb|ADZ32570.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S+ + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSAGV 709


>gi|256011582|gb|ACU55647.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSSGI 711


>gi|339507685|gb|AEJ81254.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 587 SEVNIVTDSQYALGIIQAQPDRSDSELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 642

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 643 QVDKLVSSGI 652


>gi|327458237|gb|AEA76558.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +QS  + S S  + + I  L++K K    ++  WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQSQPDKSESELVNQIIEQLINKEK----IYLAWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSNGI 556


>gi|259122672|gb|ACV92638.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESEVVNQIIEKLVEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|14290012|gb|AAK59197.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI
Sbjct: 642 QDSETKVNIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKEK----VYLSWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSSGI 711


>gi|60651888|gb|AAX32977.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEEL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|407734864|gb|AFU28386.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|407734849|gb|AFU28374.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|306477991|gb|ADM89370.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|306477755|gb|ADM89252.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|148745871|emb|CAK49324.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 964

 Score = 43.9 bits (102), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  QV +  D+  +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI
Sbjct: 642 QDSGSQVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEKLIEKDK----IYLSWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSSGI 711


>gi|407734854|gb|AFU28378.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|259122712|gb|ACV92674.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESEVVNQIIEKLVEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|15055097|gb|AAK82844.1| pol protein [Simian immunodeficiency virus]
          Length = 1016

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 48  SSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           S NPI REI N +   + V+     WVP+H GI GNE+ D+L  + +
Sbjct: 681 SDNPIVREIINQMIAKEAVY---LAWVPAHKGIGGNEQIDKLVSKGI 724


>gi|407741778|gb|AFU34146.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGVIQAQPDRSESEVVNQIIEELIKKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|259122662|gb|ACV92629.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESELVNKIIEKLVEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|255984308|gb|ACU46226.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+I + S S  +++ I  L+ K K    ++  WVP+H GI GNE+
Sbjct: 92  EVNIITDSQYALGIIQAIPDKSESELVSQIIEQLIKKEK----VYLXWVPAHKGIGGNEQ 147

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 148 VDKLVSXGI 156


>gi|119195267|ref|XP_001248237.1| hypothetical protein CIMG_02008 [Coccidioides immitis RS]
          Length = 474

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 50  NPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
           N  A E+  +L   +   SLH  WVP+H GI GNE ADRLAKEA
Sbjct: 244 NVYAAELARVLMGLEIAISLH--WVPAHQGIKGNELADRLAKEA 285


>gi|38491500|gb|AAR21910.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|14091520|gb|AAK53779.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|5733955|gb|AAD49792.1|AF107771_5 Pol polyprotein [Human immunodeficiency virus 1]
          Length = 958

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 640 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 695

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 696 QVDKLVSSGI 705


>gi|306477835|gb|ADM89292.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHRGIGGNEQVDKLVSSGI 556


>gi|306416212|gb|ADM86953.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|292658912|gb|ADE34308.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S+ + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESDIVNQIIEKLIEKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|49472950|gb|AAT66292.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKDK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|306477875|gb|ADM89312.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  + + I+ L
Sbjct: 466 VVALTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIKQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IQKEK----IYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|260533764|gb|ACX45160.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDQSESELVNKIIEKLIEKDK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|148745887|emb|CAK49332.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 964

 Score = 43.9 bits (102), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|49574288|gb|AAT66815.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLMKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|407741788|gb|AFU34154.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407741798|gb|AFU34162.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGVIQAQPDRSESEVVNQIIEELIKKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|259122642|gb|ACV92611.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESEVVNQIIEKLVEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|256011340|gb|ACU55526.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  ++S S  + + I  L+ K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDISESELVNQIIEQLIKKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|112497892|gb|ABI20294.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L       E  +      SL  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIHLALQDSGXEVNIVTDSQYSLGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|49574286|gb|AAT66814.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLMKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|395455472|gb|AFN62151.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S+ + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESDIVNQIIEKLIEKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|345809489|gb|AEO17416.1| pol protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 25  SECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAG 82
           SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI G
Sbjct: 644 SESEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGG 699

Query: 83  NEEADRLAKEAL 94
           NE+ D+L    +
Sbjct: 700 NEQVDKLVSTGI 711


>gi|256011712|gb|ACU55712.1| pol protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 622 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 681

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 682 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 712


>gi|256011404|gb|ACU55558.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSIADTTNQKTELQAILLALQDAGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEZL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IXKEK----VYLSWVPAHKGIGGNEQVDKLVSAGI 711


>gi|255984010|gb|ACU46077.1| pol protein [Human immunodeficiency virus 1]
          Length = 659

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K +    ++  WVP+H GI GNE
Sbjct: 590 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKER----VYLAWVPAHKGIGGNE 645

Query: 85  EADRLAKEALS 95
           + D+L    +S
Sbjct: 646 QVDKLVSAGIS 656


>gi|13095104|gb|AAK12137.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSITDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+AD+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQADKLVSAGI 556


>gi|29119267|gb|AAO63188.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|407741793|gb|AFU34158.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGVIQAQPDRSESEVVNQIIEELIKKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407741783|gb|AFU34150.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGVIQAQPDRSESEVVNQIIEELIKKDK----IYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|341571770|gb|AEK79539.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|256011548|gb|ACU55630.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 641 QDSELEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSXGI 710


>gi|222428301|gb|ACM49971.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|114431166|dbj|BAF31415.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 INKER----VYLSWVPAHKGIGGNEQVDKLVSAGI 711


>gi|38491723|gb|AAR22109.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|344311623|gb|AEN04334.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 562

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  LQ+  + S S  + + I  L+ K +    ++ TWVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGILQAQPDRSESEIVNQIIEELIKKER----VYLTWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|256010931|gb|ACU55322.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 618 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEXVSQIIEQL 677

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 678 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 708


>gi|222428276|gb|ACM49951.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ IPDT ++    Q  +    + S  +V +  D+  +L  +Q+  + S S  + + I  
Sbjct: 621 VVSIPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESEVVNQIIEQ 679

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 LITKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|242804449|ref|XP_002484377.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218717722|gb|EED17143.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 833

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P          KR  K++ L+   ++W  
Sbjct: 650 SIQIRWVPGHAKIPENEAADLAAKEGAASTPPAPQKSSYASLKRHAKTQSLSAAQSQWQK 709

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 710 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGRIIA 742


>gi|121645194|gb|ABM63553.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +   I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDTSESEIVNLIIEKLIGKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           +AD+L    +
Sbjct: 702 QADKLVSNGV 711


>gi|119507248|dbj|BAF42488.1| Pol [Human immunodeficiency virus 1]
 gi|119507258|dbj|BAF42497.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83
           KSE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI GN
Sbjct: 645 KSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKEK----VYLSWVPAHKGIGGN 700

Query: 84  EEADRLAKEAL 94
           E+ D+L    +
Sbjct: 701 EQVDKLVSNGI 711


>gi|38491546|gb|AAR21951.1| pol protein [Human immunodeficiency virus 1]
 gi|282598096|gb|ADA83330.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|49574274|gb|AAT66808.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----IYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|71794614|emb|CAI28854.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1434

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 14   YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
            Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +W
Sbjct: 1066 YAIFLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIGKDK----VYLSW 1121

Query: 74   VPSHVGIAGNEEADRLAKEAL 94
            VP+H GI GNE+ D+L    +
Sbjct: 1122 VPAHKGIGGNEQVDKLVSSGI 1142


>gi|407733782|gb|AFU27459.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  I + I  L+ K K    ++ +WVP+H GI
Sbjct: 642 QDSESEVNIVTDSQYALGIIQAQPDRSDSEVINQIIEELIKKEK----VYLSWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSSGI 711


>gi|350432389|gb|AEQ28457.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 650 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 705

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 706 QVDKLVSSGI 715


>gi|363584098|gb|AEW27635.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1005

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I +T ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 623 VVSITNTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 682

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 683 IKKDK----VYLAWVPAHKGIGGNEQVDKLVSAGI 713


>gi|341571586|gb|AEK79410.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSESEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSNGI 711


>gi|256252324|dbj|BAH97362.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|14091546|gb|AAK53792.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.9 bits (102), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|341571479|gb|AEK79338.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S+S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDTSNSELVNQIIEQLINKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|238733942|gb|ACR55205.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + R I  L++K +    ++ +WVP+H GI GNE
Sbjct: 651 SEVNIVTDSQYALGIIQAQPDRSESEIVNRIIEKLIEKER----VYLSWVPAHKGIGGNE 706

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 707 QVDKLVSYGI 716


>gi|195409394|gb|ACF95958.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|119507421|dbj|BAF42634.1| Pol [Human immunodeficiency virus 1]
          Length = 1010

 Score = 43.5 bits (101), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 714


>gi|410585816|gb|AFV74189.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K K     H +WVP+H GI GNE
Sbjct: 648 SEVNIVTDSQYALGIIQAQPDRSESKVVNQIIEELIKKEK---VYHLSWVPAHKGIGGNE 704

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 705 QVDKLVSSGI 714


>gi|238734044|gb|ACR55295.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 711


>gi|22596465|gb|AAN03230.1|AF457079_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|49574290|gb|AAT66816.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQVIERLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|25166811|gb|AAN73601.1|AF484496_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1428

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 12   IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHF 71
            IY  +  +GT    E  +      +L  +Q+  + S S  + + I  L++K+K    ++ 
Sbjct: 1062 IYLALQDSGT----EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYL 1113

Query: 72   TWVPSHVGIAGNEEADRLAKEAL 94
            +WVP+H GI GNE+ D+L    +
Sbjct: 1114 SWVPAHKGIGGNEQVDKLVSSGI 1136


>gi|88174688|gb|ABD39429.1| pol protein [Human immunodeficiency virus 1]
          Length = 1010

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 631 LTDTTNQQTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEVVSKIIEQLIKK 690

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 691 EK----VYLAWVPAHKGIGGNEQVDKLVSSGI 718


>gi|306416234|gb|ADM86964.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|238733933|gb|ACR55197.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + R I  L++K +    ++ +WVP+H GI GNE
Sbjct: 651 SEVNIVTDSQYALGIIQAQPDRSESEIVNRIIEKLIEKER----VYLSWVPAHKGIGGNE 706

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 707 QVDKLVSYGI 716


>gi|222428251|gb|ACM49931.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQARPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEKVDKLVSNGI 711


>gi|213495576|gb|ACJ49044.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSELEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSNGI 711


>gi|148745859|emb|CAK49318.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 964

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|25807936|gb|AAN74523.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|2745748|gb|AAC97532.1| gag-pol polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1076 SEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1131

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1132 QVDKLVSSGI 1141


>gi|83774376|dbj|BAE64500.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1292

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 35   NSLSALQSIQN---VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S+SALQ+I+N    S    I   ++   +       L   W+P H    GN+ AD+LA+
Sbjct: 1055 DSMSALQAIRNPGNKSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKLAR 1114

Query: 92   EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LRQIK------EENRPWN 144
             A+  +        ++  +   + +IL  W  EW        LR+I          R ++
Sbjct: 1115 MAVGLDKMHPFPRLVSQERASIRKQILKEWEHEWKTCKKGSHLRRIDPKLPAIRTRRLYD 1174

Query: 145  PPFSMSRKEQVSITRLRIGPC 165
               S+ R +   +T+LR G C
Sbjct: 1175 ---SLPRNQAYLLTQLRTGHC 1192


>gi|407733026|gb|AFU26831.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|407733021|gb|AFU26827.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|407733008|gb|AFU26816.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|407732984|gb|AFU26795.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407733031|gb|AFU26835.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407733041|gb|AFU26843.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|317156327|ref|XP_001825633.2| reverse transcriptase [Aspergillus oryzae RIB40]
          Length = 1393

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 13/141 (9%)

Query: 35   NSLSALQSIQN---VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAK 91
            +S+SALQ+I+N    S    I   ++   +       L   W+P H    GN+ AD+LA+
Sbjct: 1156 DSMSALQAIRNPGNKSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKLAR 1215

Query: 92   EALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK-LRQIK------EENRPWN 144
             A+  +        ++  +   + +IL  W  EW        LR+I          R ++
Sbjct: 1216 MAVGLDKMHPFPRLVSQERASIRKQILKEWEHEWKTCKKGSHLRRIDPKLPAIRTRRLYD 1275

Query: 145  PPFSMSRKEQVSITRLRIGPC 165
               S+ R +   +T+LR G C
Sbjct: 1276 ---SLPRNQAYLLTQLRTGHC 1293


>gi|256010883|gb|ACU55298.1| pol protein [Human immunodeficiency virus 1]
          Length = 873

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  JQ+  + S S  + + I  L
Sbjct: 622 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIJQAQPDKSESELVNQIIEQL 681

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 682 IXKEK----VYLSWVPAHKGIGGNEQVDKLVSNGI 712


>gi|159031765|dbj|BAF91854.1| polyprotein [Human immunodeficiency virus 1]
          Length = 537

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 435 VVSMTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 494

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +W+P+H GI GNE+ D+L    +
Sbjct: 495 IKKEK----VYLSWIPAHKGIGGNEQVDKLVSNGI 525


>gi|114431146|dbj|BAF31397.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|38491596|gb|AAR21996.1| pol protein [Human immunodeficiency virus 1]
 gi|282597997|gb|ADA83246.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407738464|gb|AFU31407.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE ++      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVKIVTDSQYALGIIQAQPDRSDSEVVNQIIEELINKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|402534183|dbj|BAM37387.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|148745885|emb|CAK49331.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 964

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIITDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|148745879|emb|CAK49328.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 963

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSXGI 710


>gi|114431176|dbj|BAF31424.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 INKER----VYLSWVPAHKGIGGNEQVDKLVSAGI 711


>gi|57901099|gb|AAW57864.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 6   DTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK 64
           DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K K
Sbjct: 627 DTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQLIKKEK 686

Query: 65  HVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
               ++  WVP+H GI GNE+ D+L    +
Sbjct: 687 ----VYLAWVPAHKGIGGNEQVDKLVSSGI 712


>gi|37682771|gb|AAQ98357.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I +L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEDLINKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|25167021|gb|AAN73790.1|AF484517_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1434

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1073 SEVNIVTDSQYALGIIQAQPDKSDSEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1128

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1129 QVDKLVSSGI 1138


>gi|407732992|gb|AFU26802.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|255984050|gb|ACU46097.1| pol protein [Human immunodeficiency virus 1]
          Length = 659

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 590 SEVNIVTDSQYALGIIQAKPDXSESELVNQIIEKLIXKDK----VYLSWVPAHKGIGGNE 645

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 646 QVDKLVSXGI 655


>gi|108860396|dbj|BAE95918.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83
           KSE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI GN
Sbjct: 645 KSEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKEK----VYLSWVPAHKGIGGN 700

Query: 84  EEADRLAKEAL 94
           E+ D+L    +
Sbjct: 701 EQVDKLVSNGI 711


>gi|25167011|gb|AAN73781.1|AF484516_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1433

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23   EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
            + SE +V +  D+  +L  LQ+  + S S  + + I  L+ K K    ++ +WVP+H GI
Sbjct: 1072 QDSELEVNIVTDSQYALGILQAQPDKSESELVNQIIEQLIKKEK----VYLSWVPAHKGI 1127

Query: 81   AGNEEADRLAKEAL 94
             GNE+ D+L    +
Sbjct: 1128 GGNEQVDKLVSNGI 1141


>gi|376406780|gb|AFB38891.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + + K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKEEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|341571598|gb|AEK79419.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 624 ITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKK 683

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 EK----VYLAWVPAHKGIGGNEQVDKLVSSGI 711


>gi|327458391|gb|AEA76635.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 487 QDSELEVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKEK----VYLAWVPAHKGI 542

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 543 GGNEQVDKLVSAGI 556


>gi|302594720|gb|ADL59548.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+I + S S  + + I  L++K K    ++ +WVP+H GI GNE+
Sbjct: 52  EVNIITDSQYALGIIQAIPDKSESEIVNQIIEQLINKEK----VYLSWVPAHKGIGGNEQ 107

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 108 VDKLVSSGI 116


>gi|116518682|gb|ABJ99566.1| pol protein [Human immunodeficiency virus 1]
          Length = 996

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 638 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 693

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 694 QVDKLVSSGI 703


>gi|108860406|dbj|BAE95927.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESQLVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|3132812|gb|AAC29078.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|409181541|gb|AFV26769.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSDSELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407733036|gb|AFU26839.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|407733016|gb|AFU26823.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGVIQAQPDRSESEVVSQIIEELIRKEK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|344311822|gb|AEN04433.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 562

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K +    ++ TWVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKER----VYLTWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSRGI 556


>gi|388332040|gb|AFK29862.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGVIQAQPDRSDSEVVNQIIEELIKKDK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|325636572|gb|ADZ34270.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|255984284|gb|ACU46214.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 66  VVSITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 125

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 126 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSXGI 156


>gi|186940893|dbj|BAG31034.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|10436141|gb|AAG16819.1| pol protein [Human immunodeficiency virus 1]
 gi|300431913|gb|ADK12812.1| pol protein [Human immunodeficiency virus 1]
 gi|300431923|gb|ADK12821.1| pol protein [Human immunodeficiency virus 1]
 gi|300431933|gb|ADK12830.1| pol protein [Human immunodeficiency virus 1]
 gi|300431943|gb|ADK12839.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 IVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|344311824|gb|AEN04434.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 562

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K +    ++ TWVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKER----VYLTWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSRGI 556


>gi|327458267|gb|AEA76573.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|306478185|gb|ADM89467.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKDK----VYLAWVPAHKGIGGNEQVDKLVSTGI 556


>gi|282598105|gb|ADA83338.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|256011614|gb|ACU55663.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           + DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 624 LTDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIQK 683

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 684 EK----VYLTWVPAHKGIGGNEQVDKLVSAGI 711


>gi|226347291|gb|ACO50060.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|87137490|gb|ABD27960.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I NL+ K +    ++ +WVP+H GI
Sbjct: 41  QDSESEVNIVTDSQYALGIIQAQPDKSESEIVNQIIENLIKKER----IYLSWVPAHKGI 96

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 97  GGNEQVDKLVSSGV 110


>gi|38491713|gb|AAR22100.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|49574284|gb|AAT66813.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|256011688|gb|ACU55700.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 625 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEXVSQIIEQL 684

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 685 IQKXK----VYLAWVPAHKGIGGNEQVDKLVSHGI 715


>gi|194399919|gb|ACF60892.1| pol protein [Human immunodeficiency virus 1]
          Length = 1010

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ +PDT ++    Q  +    + S  +V +  D+  +L  +Q+  + S S  +++ I  
Sbjct: 628 VVSLPDTTNQKTELQA-IYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEE 686

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 687 LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 718


>gi|37682471|gb|AAQ98164.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83
           KSE  +      +L  +Q+  + S S  + + I  L++K +    ++ +WVP+H GI GN
Sbjct: 642 KSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKER----VYLSWVPAHKGIGGN 697

Query: 84  EEADRLAKEAL 94
           E+ D+L    +
Sbjct: 698 EQVDKLVSSGI 708


>gi|22596495|gb|AAN03257.1|AF457082_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLSWVPAHKGIGGNEQVDKLVSSGI 711


>gi|49574268|gb|AAT66805.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|402534173|dbj|BAM37378.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSNGI 709


>gi|344311768|gb|AEN04406.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 562

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P T ++    + + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 466 IISLPXTTNQKAELHAIQLALQDSGSEVNIVTDSQYALGIIQAXPDKSESELVNQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++ +WVP+H GI GNE+ D+L  + +
Sbjct: 526 INKER----IYLSWVPAHKGIGGNEQVDKLVSKGI 556


>gi|374349831|gb|AEZ35576.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 945

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 588 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 643

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 644 QVDKLVSSGI 653


>gi|374349762|gb|AEZ35530.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 992

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI
Sbjct: 631 QDSESEVNIVTDSQYALGIIQAQPDRSESEIVNQTIEELIKKEK----VYLSWVPAHKGI 686

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 687 GGNEQVDKLVSSGI 700


>gi|325636597|gb|ADZ34291.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|325636592|gb|ADZ34287.1| pol protein [Human immunodeficiency virus 1]
 gi|325636616|gb|ADZ34307.1| pol protein [Human immunodeficiency virus 1]
 gi|325636628|gb|ADZ34317.1| pol protein [Human immunodeficiency virus 1]
 gi|325636640|gb|ADZ34327.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|325636584|gb|ADZ34280.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|319444223|gb|ADV58231.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 IVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|260533705|gb|ACX45107.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +   I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGIIQAQPDRSESGIVNEIIEKLIEKDK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|256252344|dbj|BAH97380.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|87137486|gb|ABD27958.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I NL+ K +    ++ +WVP+H GI
Sbjct: 41  QDSELEVNIVTDSQYALGIIQAQPDKSESEIVNQIIENLIKKER----VYLSWVPAHKGI 96

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 97  GGNEQVDKLVSSGI 110


>gi|3132802|gb|AAC29069.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|322711772|gb|EFZ03345.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 1090

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 73  WVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNK 132
           W+P H  IAGNE+AD LAK   S  +PP     +   +R  + +    ++  W   A  +
Sbjct: 681 WIPGHTNIAGNEQADALAKAGCSRPAPPDALPTLVHLRRVARKQPREAFDAWWTTAAPER 740

Query: 133 LRQIK 137
            + +K
Sbjct: 741 YKPLK 745


>gi|289469790|gb|ADC96550.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLADTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSKSELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|281331916|emb|CAY83134.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1435

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S+ + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 1078 SEVNIVTDSQYALGIIQAQPDKSESDLVNQIIEQLIQKDK----VYLSWVPAHKGIGGNE 1133

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1134 QVDKLVSSGI 1143


>gi|256011378|gb|ACU55545.1| pol protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 24  KSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83
           +SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI GN
Sbjct: 646 RSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGIGGN 701

Query: 84  EEADRLAKEAL 94
           E+ D+L    +
Sbjct: 702 EQVDKLVSSGV 712


>gi|256252334|dbj|BAH97371.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|229661974|gb|ACQ84422.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           I DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 624 ITDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKK 683

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 EK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|242825380|ref|XP_002488428.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
 gi|218712246|gb|EED11672.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
          Length = 897

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 35  NSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           +S  A +S + +++  P+    R  L   K   S+   WVP H  I  NE AD  AKE  
Sbjct: 686 SSQEAFESFRTLAAGWPL----RERLPHTKSG-SVQIRWVPGHTKIPENEAADSAAKEGA 740

Query: 95  SSNSPPVNTIPINDFKRFFKSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQ 154
           +S  P          KR  K++ L+   T W  +A    + ++    P  P        +
Sbjct: 741 ASTPPSPCKSSYASLKRHAKTQSLSAAQTRWQTIAPQTYQDLEITTSPKRP-------GE 793

Query: 155 VSITRLRIGPCIS 167
           + + RL +G  I+
Sbjct: 794 LQLNRLDLGHIIA 806


>gi|158967349|gb|ABW86698.1| pol protein [Human immunodeficiency virus 1]
          Length = 1009

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 652 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 707

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 708 QVDKLVSSGI 717


>gi|148745899|emb|CAK49338.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 966

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 648 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 703

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 704 QVDKLVSNGI 713


>gi|22596339|gb|AAN03119.1|AF457064_2 pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|49574303|gb|AAT66822.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|49574266|gb|AAT66804.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|88174658|gb|ABD39402.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSELEVNIVTDSQYALGIIQAKPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSNGI 711


>gi|391379702|gb|AFM44332.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K K    ++  WVP+H GI GNE
Sbjct: 650 SEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQLINKEK----VYLAWVPAHKGIGGNE 705

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 706 QVDKLVSNGI 715


>gi|373842404|gb|AEY77191.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSEAEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQIDKLVSSGI 711


>gi|325636541|gb|ADZ34244.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 624 VISLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           + K K    ++  WVP+H GI GNE+ D+L
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKL 709


>gi|302594700|gb|ADL59538.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +QS  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 51  SEVNIVTDSQYALGIIQSQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 106

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 107 QVDKLVSNGI 116


>gi|299758794|emb|CBI68502.1| polyprotein [Human immunodeficiency virus 1]
          Length = 705

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----IYLSWVPAHKGIGGNE 700

Query: 85  EADRL 89
           + D+L
Sbjct: 701 QVDKL 705


>gi|255069232|dbj|BAH89164.1| Pol [Human immunodeficiency virus 1]
 gi|255069242|dbj|BAH89173.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|238733896|gb|ACR55164.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|186940913|dbj|BAG31052.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|186940903|dbj|BAG31043.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|148745877|emb|CAK49327.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 965

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSNGI 712


>gi|148745891|emb|CAK49334.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
           1]
          Length = 964

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|112351439|gb|ABI15232.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K +    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDQSESEIVNKIIEKLIEKER----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 702 QVDKLVSDGI 711


>gi|45361101|gb|AAS59323.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|39777425|gb|AAR31002.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI
Sbjct: 639 QDSESEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIGKDK----VYLSWVPAHKGI 694

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 695 GGNEQVDKLVSSGI 708


>gi|38491703|gb|AAR22091.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|409181581|gb|AFV26805.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|328834479|gb|AEB52884.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1011

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 654 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 709

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 710 QVDKLVSNGI 719


>gi|327458393|gb|AEA76636.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 487 QDSELEVNIVTDSQYALGIIQAQPDKSXSELVSQIIEELIKKEK----VYLAWVPAHKGI 542

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 543 GGNEQVDKLVSAGI 556


>gi|319444213|gb|ADV58222.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 IVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|313574246|dbj|BAJ41070.1| Pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L     +SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIHLALQDSESEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|260533695|gb|ACX45098.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +       L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYGLGIIQAQPDKSDSELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|282598023|gb|ADA83269.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|282597987|gb|ADA83237.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|222428524|gb|ACM50149.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSLTDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|114841772|dbj|BAF32220.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSDSEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|38491586|gb|AAR21987.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSTGI 711


>gi|5059042|gb|AAD38882.1|AF119819_2 pol polyprotein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P+T ++    Q + L      SE  +      ++  +Q+  + S S+ + + I  L
Sbjct: 620 VITLPETTNQKTELQAIYLALQDSGSEVNIVTDSQYAMGIIQAKPDKSESDLVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 680 IQKDK----VYLSWVPAHKGIGGNEQVDKLVSNGI 710


>gi|74099686|gb|AAZ28900.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  +V + PD+  +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI
Sbjct: 639 QDSGSEVNIVPDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK----VYLSWVPAHKGI 694

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 695 GGNEQVDKLVSSGI 708


>gi|371559446|gb|AEX36631.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 995

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K +    ++ +WVP+H GI GNE
Sbjct: 638 SEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKER----VYLSWVPAHKGIGGNE 693

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 694 QVDKLVSQGI 703


>gi|341571675|gb|AEK79473.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|339507160|gb|AEJ80992.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 562 VVSLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GBE+ D+L    +
Sbjct: 622 IKKEK----VYLAWVPAHKGIGGBEQVDKLVSAGI 652


>gi|328834535|gb|AEB52934.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K +    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKER----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L  + +
Sbjct: 702 QVDKLVSQGI 711


>gi|325636522|gb|ADZ34228.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.044,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 624 VISLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           + K K    ++  WVP+H GI GNE+ D+L
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKL 709


>gi|289469864|gb|ADC96587.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|114841782|dbj|BAF32229.1| Pol [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSDSEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|441442621|gb|AGC32212.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 984

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 620 VISLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GN++ D+L    +
Sbjct: 680 IQKEK----VYLTWVPAHKGIGGNKQVDKLVSNGI 710


>gi|407741312|gb|AFU33762.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407737656|gb|AFU30726.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|341571685|gb|AEK79480.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKDK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|242821171|ref|XP_002487626.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712547|gb|EED11972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 372

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD   KE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 189 SIQIRWVPGHAKIPENEAADLTTKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 248

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P        R  ++ + RL +G  I+
Sbjct: 249 VAPQSYQDLEITTSP-------KRPGELQLNRLDLGHVIA 281


>gi|37496491|emb|CAD48448.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1499

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1142 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1197

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1198 QVDKLVSSGI 1207


>gi|32399658|emb|CAD59561.1| gag-pol fusion protein [Human immunodeficiency virus 1]
          Length = 1437

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 6    DTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK 64
            DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K K
Sbjct: 1060 DTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQLIKKEK 1119

Query: 65   HVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
                ++  WVP+H GI GNE+ D+L    +
Sbjct: 1120 ----VYLAWVPAHKGIGGNEQVDKLVSSGI 1145


>gi|49574270|gb|AAT66806.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|407741322|gb|AFU33770.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407737664|gb|AFU30733.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|407737648|gb|AFU30719.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|407737632|gb|AFU30705.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|325636503|gb|ADZ34212.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 624 VISLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           + K K    ++  WVP+H GI GNE+ D+L
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKL 709


>gi|325636498|gb|ADZ34208.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 624 VISLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           + K K    ++  WVP+H GI GNE+ D+L
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKL 709


>gi|325636470|gb|ADZ34185.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 624 VISLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           + K K    ++  WVP+H GI GNE+ D+L
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKL 709


>gi|325636465|gb|ADZ34181.1| pol protein [Human immunodeficiency virus 1]
 gi|325636482|gb|ADZ34195.1| pol protein [Human immunodeficiency virus 1]
 gi|325636553|gb|ADZ34254.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 624 VISLPDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRL 89
           + K K    ++  WVP+H GI GNE+ D+L
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKL 709


>gi|288558549|dbj|BAI68331.1| polyprotein [Human immunodeficiency virus 1]
          Length = 323

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P+T ++    + + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 212 VVSLPETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEEL 271

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 272 IKKEK----VYLSWVPAHKGIGGNEQVDKLVSSGI 302


>gi|158935173|emb|CAM90425.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I NL+ K +    ++ +WVP+H GI
Sbjct: 41  QDSELEVNIVTDSQYALGIIQAQPDKSESELVNQIIENLIKKER----VYLSWVPAHKGI 96

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 97  GGNEQVDKLVSSGI 110


>gi|94959110|gb|ABF47499.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLINKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSTGI 711


>gi|38491687|gb|AAR22077.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 650 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 705

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 706 QVDKLVSNGI 715


>gi|11385868|gb|AAG34998.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 514

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 420 VISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 479

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 480 INKEK----VYLAWVPAHKGIGGNEQVDKLVSAGV 510


>gi|25166649|gb|AAN73456.1|AF484479_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1429

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1072 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1127

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1128 QVDKLVSSGI 1137


>gi|407741317|gb|AFU33766.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407741307|gb|AFU33758.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407741297|gb|AFU33750.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|376407067|gb|AFB39149.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+    S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPVRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|327458293|gb|AEA76586.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSNGI 556


>gi|319444137|gb|ADV58154.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|306478195|gb|ADM89472.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q V L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAVHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 556


>gi|256011334|gb|ACU55523.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 624 LTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESXLVSQIIEQLIKK 683

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 EK----IYLAWVPAHKGIGGNEQVDKLVSSGI 711


>gi|256011304|gb|ACU55508.1| pol protein [Human immunodeficiency virus 1]
          Length = 1011

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 629 VVSLTDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEXVSQIIEQL 688

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 689 INKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 719


>gi|256011136|gb|ACU55424.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  ++  I  L
Sbjct: 620 VVSIADTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSNIIEEL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSNGI 710


>gi|238634107|gb|ACR52015.1| pol protein [Human immunodeficiency virus 1]
          Length = 988

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L       E  +      +L  +Q+  ++S S  + + I  L
Sbjct: 624 VVSLTDTTNQKTELQAINLALQDSGLEVNIVTDSQYALGIIQAQPDISESELVNQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K +    ++  WVP+H GI GNE+AD+L    +
Sbjct: 684 IKKER----VYLAWVPAHKGIGGNEQADKLVSSGI 714


>gi|213495596|gb|ACJ49062.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESEVVSQIIEELIKKEK----IYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|113171655|gb|ABI30927.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|87137488|gb|ABD27959.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I NL+ K +    ++ +WVP+H GI
Sbjct: 41  QDSELEVNIVTDSQYALGIIQAQPDKSESELVNQIIENLIKKER----VYLSWVPAHKGI 96

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 97  GGNEQVDKLVSSGI 110


>gi|57869685|gb|AAW57723.1| pol protein [Human immunodeficiency virus 1]
          Length = 998

 Score = 43.5 bits (101), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 641 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 696

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 697 QVDKLVSSGI 706


>gi|407737624|gb|AFU30698.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|407733126|gb|AFU26912.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|407732177|gb|AFU26122.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  N S S  + + I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPNRSESEVVNQIIEELIRKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|288558531|dbj|BAI68322.1| polyprotein [Human immunodeficiency virus 1]
          Length = 326

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 242 SEVNIVTDSQYALGIIQAQPDSSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 297

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 298 QVDKLVSSGI 307


>gi|224986333|gb|ACN74896.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|49574299|gb|AAT66820.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 492 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 547

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 548 VDKLVSSGI 556


>gi|407741302|gb|AFU33754.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|345809472|gb|AEO17401.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|376407566|gb|AFB39597.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +++  + S S  +++ I  L
Sbjct: 620 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIRAQPDRSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 710


>gi|339507244|gb|AEJ81034.1| pol protein [Human immunodeficiency virus 1]
          Length = 656

 Score = 43.5 bits (101), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ IPD  ++    Q V L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 562 VVSIPDATNQKTELQAVHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 621

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 622 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 652


>gi|319444241|gb|ADV58247.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|306416276|gb|ADM86985.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIVQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|282598033|gb|ADA83278.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  QV +  D+  +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI
Sbjct: 646 QDSGSQVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGI 701

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 702 GGNEQVDKLVSNGI 715


>gi|256010865|gb|ACU55289.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  + +  + S S  +++ I  L
Sbjct: 625 VVTINDTTNQKTELQAIQLALQDSGSEVNIVTDSQYALGIIHAQPDKSESELVSQIIEQL 684

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++ TWVP+H GI GNE+ D+L    +
Sbjct: 685 IKKEK----VYLTWVPAHKGIGGNEQVDKLVSSGI 715


>gi|186940883|dbj|BAG31025.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VISLADTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDNSESEVVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|10436113|gb|AAG16794.1| pol protein [Human immunodeficiency virus 1]
 gi|300431818|gb|ADK12727.1| pol protein [Human immunodeficiency virus 1]
 gi|300431827|gb|ADK12735.1| pol protein [Human immunodeficiency virus 1]
 gi|300431836|gb|ADK12743.1| pol protein [Human immunodeficiency virus 1]
 gi|300431845|gb|ADK12751.1| pol protein [Human immunodeficiency virus 1]
 gi|300431854|gb|ADK12759.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|409181551|gb|AFV26778.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|402534233|dbj|BAM37432.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDKSESEIVNQIIEKLVEKDK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|345809390|gb|AEO17328.1| pol protein [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|327458291|gb|AEA76585.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSNGI 556


>gi|327458265|gb|AEA76572.1| pol protein [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQXTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 556


>gi|300431989|gb|ADK12880.1| pol protein [Human immunodeficiency virus 1]
 gi|300431999|gb|ADK12889.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|158935169|emb|CAM90423.1| pol protein [Simian immunodeficiency virus]
          Length = 296

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I NL+ K +    ++ +WVP+H GI
Sbjct: 41  QDSELEVNIVTDSQYALGIIQAQPDKSESELVNQIIENLIKKER----VYLSWVPAHKGI 96

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 97  GGNEQVDKLVSSGI 110


>gi|148469878|gb|ABQ65869.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|13095191|gb|AAK12174.1| pol polyprotein [Human immunodeficiency virus 1]
          Length = 562

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT D+    Q + L       E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 468 VVSITDTTDQKTELQAIHLALQDPGLEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 527

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 528 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 558


>gi|407737174|gb|AFU30327.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 14  YQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTW 73
           Y + L      SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ +W
Sbjct: 639 YAIQLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEELIKKEK----VYLSW 694

Query: 74  VPSHVGIAGNEEADRLAKEAL 94
           VP+H GI GNE+ D+L    +
Sbjct: 695 VPAHKGIGGNEQIDKLVSSGI 715


>gi|374429714|gb|AEZ51064.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|319444164|gb|ADV58178.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|242821354|ref|XP_002487663.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712584|gb|EED12009.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 282

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 18/98 (18%)

Query: 12  IYYQVDLT---------GTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           IYY + L             ++ E    L+  +S+S LQ++ N  + N + + I   + +
Sbjct: 164 IYYAISLVLKIAMETRQAMTDRQEPATILS--DSMSVLQALSN--ARNKLGQRIIQAVQQ 219

Query: 63  NKHVFS-----LHFTWVPSHVGIAGNEEADRLAKEALS 95
           +          L   WVP H G  GNE ADRLAKEA+ 
Sbjct: 220 SVQELQTQGIPLRLQWVPGHCGDLGNEAADRLAKEAMG 257


>gi|170778863|gb|ACB36831.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAIXLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 556


>gi|451170387|gb|AGF32803.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|407736793|gb|AFU30002.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407736864|gb|AFU30064.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  + + I  L+ K K    ++ +WVP+H GI
Sbjct: 641 QDSEAEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEELIKKEK----VYLSWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSSGI 710


>gi|407733171|gb|AFU26948.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|407733136|gb|AFU26920.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|407733131|gb|AFU26916.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|345809498|gb|AEO17424.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 650 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 705

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 706 QVDKLVSSGI 715


>gi|388331992|gb|AFK29819.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|374349663|gb|AEZ35464.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 978

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 621 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 676

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 677 QVDKLVSAGI 686


>gi|328701619|ref|XP_001944874.2| PREDICTED: hypothetical protein LOC100166471 [Acyrthosiphon pisum]
          Length = 672

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 73  WVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTE---WANLA 129
           W+P+H  I GNE+AD  AKEA ++ + P   I ++ FK   ++ ++++       W    
Sbjct: 2   WIPAHKNIPGNEKADVAAKEAATNINIP--KIDLSSFKDTSRNALISSKKIHQRLWDQEL 59

Query: 130 DNKLRQIKEENRPW-NPPFSMSRKEQVSITRL 160
           +NKL QIK    P  NPP S  R++  S+ +L
Sbjct: 60  NNKLYQIKPFLSPNPNPPSSTRRQQITSLGKL 91


>gi|325635343|gb|ADZ33216.1| pol protein [Human immunodeficiency virus 1]
 gi|325635359|gb|ADZ33230.1| pol protein [Human immunodeficiency virus 1]
 gi|325635391|gb|ADZ33258.1| pol protein [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VISLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 714


>gi|300432009|gb|ADK12898.1| pol protein [Human immunodeficiency virus 1]
 gi|300432018|gb|ADK12906.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|289469806|gb|ADC96558.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VISLTDTTNQKTELQAIHLALKDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 ISKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|281331900|emb|CAY83110.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1428

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)

Query: 26   ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
            E  +      +L  +Q+  + S S+ + + I  L+ KNK    ++ +WVP+H GI GNE+
Sbjct: 1072 EVNIITDSQYALGIIQAQPDKSESDLVNQIIEQLIQKNK----VYLSWVPAHKGIGGNEQ 1127

Query: 86   ADRLAKEAL 94
             D+L    +
Sbjct: 1128 VDKLVSNGI 1136


>gi|255984678|gb|ACU46411.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 160

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++  WVP+H GI GNE
Sbjct: 91  SEVNIVTDSQYALGIIQAQPDXSESELVXQIIEQLIKKDK----VYLAWVPAHKGIGGNE 146

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 147 QVDKLVSSGI 156


>gi|238734230|gb|ACR55460.1| pol protein [Human immunodeficiency virus 1]
          Length = 1007

 Score = 43.5 bits (101), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 13/99 (13%)

Query: 1   MLGIPDTCDEH-----IYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIARE 55
           ++ I DT ++      IY  +  +GT    E  +      +L  +Q+  + S S  +++ 
Sbjct: 625 VVSIADTTNQKTELQAIYLALQDSGT----EVNIVTDSQYALGIIQAQPDKSESELVSQI 680

Query: 56  IRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           I  L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IEELIKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 715


>gi|10436170|gb|AAG16844.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|13517083|dbj|BAB40421.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1430

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1073 SEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1128

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1129 QVDKLVSNGI 1138


>gi|376407185|gb|AFB39255.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|374429822|gb|AEZ51145.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 995

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 638 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 693

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 694 QVDKLVSHGI 703


>gi|306477817|gb|ADM89283.1| pol protein [Human immunodeficiency virus 1]
          Length = 848

 Score = 43.5 bits (101), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDQSESELVSQIIEQL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+AD+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQADKLVSTGI 556


>gi|306416406|gb|ADM87050.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIVQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|170676541|gb|ACB30415.1| pol protein [Human immunodeficiency virus 1]
          Length = 584

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 466 VVSLADTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEEL 525

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 526 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 556


>gi|108860367|dbj|BAE95892.1| Pol [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|90903144|gb|ABE02157.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSNGI 710


>gi|37496499|emb|CAD48455.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
          Length = 1493

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 1136 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDK----VYLSWVPAHKGIGGNE 1191

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1192 QVDKLVSSGI 1201


>gi|407741085|gb|AFU33576.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  I + I  L+ K K    ++ +WVP+H GI
Sbjct: 641 QDSESEVNIVTDSQYALGIIQAQPDKSESEVINQIIEELIRKEK----VYLSWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSSGI 710


>gi|407733141|gb|AFU26924.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|345809445|gb|AEO17377.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|376407175|gb|AFB39246.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|306416286|gb|ADM86990.1| reverse transcriptase [Human immunodeficiency virus 1]
          Length = 560

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|242826635|ref|XP_002488682.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218712500|gb|EED11926.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 258

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 36/78 (46%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P  +       KR+ K++ L+   ++W  
Sbjct: 75  SIQIRWVPGHAKIPENEAADLAAKEGAASIPPAPHKSSYASLKRYAKTQSLSAAQSQWEK 134

Query: 128 LADNKLRQIKEENRPWNP 145
           +A    + ++    P  P
Sbjct: 135 VAPQSYQDLEITTSPKRP 152


>gi|156254403|gb|ABU62691.1| RNase H [Human immunodeficiency virus 1]
          Length = 120

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRN 58
           ++ I DT ++    Q  +    + SE +V +  D+  +L  +Q+  + S S  +++ I  
Sbjct: 26  VISITDTTNQKTELQA-IYLALQDSELEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEE 84

Query: 59  LLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           L+ K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 85  LIKKEK----VYLAWVPAHKGIGGNEQVDKLVSSGI 116


>gi|87245358|gb|ABD34851.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +QS  + S S  + + I  L+ K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQSQPDKSESELVGQIIEQLIKKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QIDKLVSNGI 711


>gi|409181571|gb|AFV26796.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVNKIIEKLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|407740760|gb|AFU33312.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|407740755|gb|AFU33308.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|407740735|gb|AFU33292.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407740745|gb|AFU33300.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407740770|gb|AFU33320.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407740785|gb|AFU33332.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|319444154|gb|ADV58169.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|260533715|gb|ACX45116.1| pol protein [Human immunodeficiency virus 1]
          Length = 1000

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 643 SEVNIVTDSQYALGIIQAQPDRSDSELVNKIIEQLIGKDK----VYLSWVPAHKGIGGNE 698

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 699 QVDKLVSSGI 708


>gi|87245348|gb|ABD34842.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +QS  + S S  + + I  L+ K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQSQPDKSESELVGQIIEQLIKKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QIDKLVSNGI 711


>gi|63014422|gb|AAY25600.1| pol protein [Human immunodeficiency virus 1]
          Length = 1001

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 644 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 699

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 700 QVDKLVSSGI 709


>gi|10436151|gb|AAG16828.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|2570321|gb|AAC97581.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
          Length = 1435

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25   SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
            SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 1078 SEVNIVTDSQYALGIIQAQPDRSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 1133

Query: 85   EADRLAKEAL 94
            + D+L    +
Sbjct: 1134 QVDKLVSSGI 1143


>gi|13569329|gb|AAK31063.1|AF286235_2 pol polyprotein [Human immunodeficiency virus 1]
          Length = 1009

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K K    ++ TWVP+H GI GNE
Sbjct: 648 SEINIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGIGGNE 703

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 704 QVDKLVSSGI 713


>gi|10436103|gb|AAG16785.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|10436160|gb|AAG16836.1| pol protein [Human immunodeficiency virus 1]
 gi|300431953|gb|ADK12848.1| pol protein [Human immunodeficiency virus 1]
 gi|300431962|gb|ADK12856.1| pol protein [Human immunodeficiency virus 1]
 gi|300431971|gb|ADK12864.1| pol protein [Human immunodeficiency virus 1]
 gi|300431980|gb|ADK12872.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|407740780|gb|AFU33328.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|407740750|gb|AFU33304.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|407740740|gb|AFU33296.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|376407976|gb|AFB39965.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|376407293|gb|AFB39352.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|328834415|gb|AEB52827.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI
Sbjct: 642 QDSESEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIQKEK----VYLAWVPAHKGI 697

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 698 GGNEQVDKLVSTGV 711


>gi|326370686|gb|ADZ56462.1| pol protein [Human immunodeficiency virus 1]
          Length = 1010

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K+K    ++ +WVP+H GI GNE
Sbjct: 653 SEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKDK----VYLSWVPAHKGIGGNE 708

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 709 QVDKLVSSGI 718


>gi|319444232|gb|ADV58239.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|319444203|gb|ADV58213.1| pol protein [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 624 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 683

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 714


>gi|319444146|gb|ADV58162.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQVDLTGTAEKS-ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q  L    +   E  +      +L  +Q+  + S S  +++ I  L
Sbjct: 621 VVSITDTTNQKTELQAILLALQDSGLEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|158967329|gb|ABW86680.1| pol protein [Human immunodeficiency virus 1]
          Length = 1005

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q ++L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 619 VVSITDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL 678

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K +    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 679 IKKER----VYLSWVPAHKGIGGNEQVDKLVSSGI 709


>gi|86277588|gb|ABC88310.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +PDT ++    Q + L       E  +      +L  +QS  + S S  + + I  L
Sbjct: 621 VVSLPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQSQPDKSESELVNQIIEQL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 IKKEK----IYLAWVPAHKGIGGNEQIDKLVSSGI 711


>gi|407741090|gb|AFU33580.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407741095|gb|AFU33584.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407741100|gb|AFU33588.1| pol protein, partial [Human immunodeficiency virus 1]
 gi|407741105|gb|AFU33592.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  I + I  L+ K K    ++ +WVP+H GI
Sbjct: 641 QDSESEVNIVTDSQYALGIIQAQPDKSESEVINQIIEELIRKEK----VYLSWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSSGI 710


>gi|407740765|gb|AFU33316.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDRSESEVVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSAGI 707


>gi|407736558|gb|AFU29808.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 946

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|376407986|gb|AFB39974.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|376407947|gb|AFB39939.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|376407303|gb|AFB39361.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|373842412|gb|AEY77195.1| pol protein, partial [Human immunodeficiency virus]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEAVNQIIEELIKKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSAGI 711


>gi|325636033|gb|ADZ33811.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 4   IPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDK 62
           + DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K
Sbjct: 624 LTDTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKK 683

Query: 63  NKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
            K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 684 EK----VYLAWVPAHKGIGGNEQVDKLVSTGI 711


>gi|228483814|gb|ACQ42721.1| pol protein [Human immunodeficiency virus 1]
          Length = 714

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 620 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 679

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K +    ++  WVP+H GI GNE+ D+L    +
Sbjct: 680 INKER----IYLAWVPAHKGIGGNEQVDKLVSAGI 710


>gi|288899146|gb|ADC67105.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L++K K    ++  WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESELVSQIIEQLINKEK----VYLAWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSNGI 711


>gi|255983960|gb|ACU46052.1| pol protein [Human immunodeficiency virus 1]
          Length = 659

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++  WVP+H GI GNE
Sbjct: 590 SEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLAWVPAHKGIGGNE 645

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 646 QVDKLVSSGI 655


>gi|238733875|gb|ACR55146.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ I DT ++    Q + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 621 VVSITDTTNQKTELQAIYLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL 680

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           ++K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 681 INKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 711


>gi|38491605|gb|AAR22004.1| pol protein [Human immunodeficiency virus 1]
          Length = 997

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHI-YYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ +P+T ++    + + L      SE  +      +L  +Q+  + S S  + + I  L
Sbjct: 615 VVSLPETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEKL 674

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K+K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 675 IGKDK----VYLSWVPAHKGIGGNEQVDKLVSSGI 705


>gi|37221354|gb|AAQ89806.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 565 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 624

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 625 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 655


>gi|5738567|emb|CAB53043.1| POL protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 647 SEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLSWVPAHKGIGGNE 702

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 703 QVDKLVSSGI 712


>gi|61102684|gb|AAX37810.1| pol protein [Human immunodeficiency virus 1]
          Length = 427

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 70  SEVNIVTDSQYALGIIQAQPDRSESGLVTQIIEKLIGKDK----VYLSWVPAHKGIGGNE 125

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 126 QVDKLVSSGI 135


>gi|407741115|gb|AFU33600.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  I + I  L+ K K    ++ +WVP+H GI
Sbjct: 641 QDSESEVNIVTDSQYALGIIQAQPDKSESEVINQIIEELIRKEK----VYLSWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSSGI 710


>gi|395455399|gb|AFN62087.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 999

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 642 SEVNIVTDSQYALGIIQAQPDKSESEIVSQIIEQLIKKEK----VYLSWVPAHKGIGGNE 697

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 698 QVDKLVSNGI 707


>gi|376407274|gb|AFB39335.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|376407254|gb|AFB39317.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|376407215|gb|AFB39282.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|328834433|gb|AEB52843.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1006

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDNS--LSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + S  QV +  D+   L  LQ+  + S S  + + I  L+ K K    ++ TWVP+H GI
Sbjct: 645 QDSGSQVNIVTDSQYVLGILQAQPDKSESELVNQIIEQLIKKEK----VYLTWVPAHKGI 700

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 701 GGNEQVDKLVSAGI 714


>gi|238734331|gb|ACR55548.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L+ K+K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGVIQAQPDRSESELVNQIIEKLIGKDK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|242824235|ref|XP_002488218.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218713139|gb|EED12564.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 267

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 7/100 (7%)

Query: 68  SLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFFKSKILTTWNTEWAN 127
           S+   WVP H  I  NE AD  AKE  +S  P          KR+ K++ L+   ++W  
Sbjct: 122 SIQIRWVPGHTIIPENEAADLAAKEGAASIPPSSYKSSYASLKRYAKTQSLSAAQSQWEK 181

Query: 128 LADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCIS 167
           +A    + ++    P  P        ++ + RL +G  I+
Sbjct: 182 VAPQSYQDLEITTSPKRPG-------ELQLNRLDLGRIIA 214


>gi|38491791|gb|AAR22169.1| pol protein [Human immunodeficiency virus 1]
          Length = 1004

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 6   DTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNK 64
           DT ++    Q ++L      SE  +      +L  +Q+  + S S  +++ I  L+ K K
Sbjct: 627 DTTNQKTELQAINLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEELIKKEK 686

Query: 65  HVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
               ++  WVP+H GI GNE+ D+L    +
Sbjct: 687 ----VYLAWVPAHKGIGGNEQVDKLVSSGI 712


>gi|38491870|gb|AAR22240.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      SL  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYSLGIIQAQPDRSDSELVNQIIEKLIEKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QIDKLVSSGI 711


>gi|37221356|gb|AAQ89807.1| pol protein [Human immunodeficiency virus 1]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 565 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 624

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 625 IKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGI 655


>gi|407741110|gb|AFU33596.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 23  EKSECQVYLTPDN--SLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80
           + SE +V +  D+  +L  +Q+  + S S  I + I  L+ K K    ++ +WVP+H GI
Sbjct: 641 QDSESEVNIVTDSQYALGIIQAQPDKSESEVINQIIEELIRKEK----VYLSWVPAHKGI 696

Query: 81  AGNEEADRLAKEAL 94
            GNE+ D+L    +
Sbjct: 697 GGNEQVDKLVSSGI 710


>gi|376407205|gb|AFB39273.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


>gi|312601913|gb|ADQ92513.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 26  ECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEE 85
           E  +      +L  +Q+  + S S  +++ I  L+ K K    ++ TWVP+H GI GNE+
Sbjct: 647 EVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEK----VYLTWVPAHKGIGGNEQ 702

Query: 86  ADRLAKEAL 94
            D+L    +
Sbjct: 703 VDKLVSSGI 711


>gi|256011652|gb|ACU55682.1| pol protein [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 2   LGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLL 60
           + +PDT ++    Q + L       E  +      +L  +Q+  + S S  + + I  L+
Sbjct: 622 ISLPDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLI 681

Query: 61  DKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           +K K    ++ +WVP+H GI GNE+ D+L    +
Sbjct: 682 NKEK----VYLSWVPAHKGIGGNEQVDKLVSAGI 711


>gi|407741491|gb|AFU33908.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1002

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 645 SEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKKK----VYLSWVPAHKGIGGNE 700

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 701 QVDKLVSSGI 710


>gi|407736574|gb|AFU29822.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1003

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  +++ I  L+ K K    ++ +WVP+H GI GNE
Sbjct: 646 SEVNIVTDSQYALGIIQAQPDRSESEIVSQIIEELIKKEK----VYLSWVPAHKGIGGNE 701

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 702 QVDKLVSSGI 711


>gi|407734272|gb|AFU27879.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 998

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q+  + S S  + + I  L++K K    ++ +WVP+H GI GNE
Sbjct: 641 SEVNIVTDSQYALGIIQAQPDRSESEVVNQIIEKLIEKEK----VYLSWVPAHKGIGGNE 696

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 697 QVDKLVSSGI 706


>gi|344311794|gb|AEN04419.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 562

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 25  SECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84
           SE  +      +L  +Q++ + S S  + + I  L+ K +    ++ +WVP+H GI GNE
Sbjct: 491 SEVNIVTDSQYALGIIQALPDKSESELVNQIIEQLIKKER----VYLSWVPAHKGIGGNE 546

Query: 85  EADRLAKEAL 94
           + D+L    +
Sbjct: 547 QVDKLVSSGI 556


>gi|376407957|gb|AFB39948.1| pol protein, partial [Human immunodeficiency virus 1]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 1   MLGIPDTCDEHIYYQ-VDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNL 59
           ++ + DT ++    Q + L      SE  +      +L  +Q+  + S S  +++ I  L
Sbjct: 626 VVSLTDTTNQKTELQAIHLALQDSGSEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQL 685

Query: 60  LDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           + K K    ++  WVP+H GI GNE+ D+L    +
Sbjct: 686 IKKEK----IYLAWVPAHKGIGGNEQVDKLVSAGI 716


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.131    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,182,576,784
Number of Sequences: 23463169
Number of extensions: 121258838
Number of successful extensions: 319219
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 9577
Number of HSP's that attempted gapping in prelim test: 318439
Number of HSP's gapped (non-prelim): 10269
length of query: 196
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 61
effective length of database: 9,191,667,552
effective search space: 560691720672
effective search space used: 560691720672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 73 (32.7 bits)