Query psy16693
Match_columns 196
No_of_seqs 140 out of 1331
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:36:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.7 6.5E-17 2.2E-21 125.4 8.4 85 12-96 48-147 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 99.7 2E-16 6.7E-21 122.6 9.8 81 12-96 49-151 (154)
3 3h08_A RNH (ribonuclease H); R 99.6 2.9E-16 9.8E-21 120.4 8.3 81 12-96 43-144 (146)
4 3p1g_A Xenotropic murine leuke 99.6 8.8E-16 3E-20 120.9 8.8 85 12-96 62-156 (165)
5 2e4l_A Ribonuclease HI, RNAse 99.6 1.6E-15 5.6E-20 118.1 8.4 81 12-96 45-145 (158)
6 1jl1_A Ribonuclease HI; RNAse 99.6 1.4E-15 4.7E-20 118.2 7.9 82 12-97 43-144 (155)
7 1ril_A Ribonuclease H; hydrola 99.6 3.2E-15 1.1E-19 117.5 7.2 82 12-97 47-149 (166)
8 2lsn_A Reverse transcriptase; 99.5 2.8E-14 9.7E-19 112.3 8.5 68 26-96 74-163 (165)
9 2kq2_A Ribonuclease H-related 99.5 2.3E-15 7.9E-20 116.0 1.8 83 12-97 49-138 (147)
10 1mu2_A HIV-2 RT; HIV-2 reverse 99.4 2.2E-13 7.5E-18 124.9 9.4 80 12-94 472-555 (555)
11 2zd1_A Reverse transcriptase/r 99.4 3.3E-13 1.1E-17 123.8 7.4 79 12-93 475-557 (557)
12 3u3g_D Ribonuclease H, RNAse H 99.3 6E-12 2E-16 94.4 8.5 78 12-96 44-137 (140)
13 3hst_B Protein RV2228C/MT2287; 99.3 1.1E-11 3.8E-16 93.3 9.7 81 12-96 45-133 (141)
14 2ehg_A Ribonuclease HI; RNAse 99.2 1.8E-11 6.3E-16 93.6 8.1 77 12-96 47-134 (149)
15 1zbf_A Ribonuclease H-related 97.0 0.00012 4E-09 55.7 0.4 75 12-88 50-139 (142)
16 4htu_A Ribonuclease H, RNAse H 93.6 0.16 5.6E-06 37.9 6.1 35 12-46 44-83 (134)
17 3iz6_N 40S ribosomal protein S 20.6 75 0.0026 19.7 2.6 26 163-195 2-29 (56)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.68 E-value=6.5e-17 Score=125.36 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=63.4
Q ss_pred HHHHHHHHHHH--HhcCCCEEEEecccHHHHHHHhccc---CCC--------hH--HHHHHHHHHhccCCceEEEEecCC
Q psy16693 12 IYYQVDLTGTA--EKSECQVYLTPDNSLSALQSIQNVS---SSN--------PI--AREIRNLLDKNKHVFSLHFTWVPS 76 (196)
Q Consensus 12 ~~~~~e~~~~~--~~~~~~~i~I~tDs~sal~~l~~~~---~~~--------~~--~~~i~~l~~~~~~~~~v~~~Wvpg 76 (196)
+...+|+.|+. .+....++.|+|||++++++|.+|. ..+ ++ ...++++++...+...|.|.||||
T Consensus 48 Tnn~aEl~A~i~AL~~~~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~g 127 (150)
T 3qio_A 48 TNQKTELQAIYLALQDSGLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPA 127 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccC
Confidence 46789999875 3444689999999999999999862 111 11 122344444334456899999999
Q ss_pred CCCCccchHHhHHHHHHhhc
Q psy16693 77 HVGIAGNEEADRLAKEALSS 96 (196)
Q Consensus 77 H~gi~gNe~aD~~A~~a~~~ 96 (196)
|+|++|||.||+||++|+..
T Consensus 128 H~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 128 HKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp TSCCHHHHHHHHHHHTTTSC
T ss_pred cCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.67 E-value=2e-16 Score=122.57 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=62.7
Q ss_pred HHHHHHHHHHH------HhcCCCEEEEecccHHHHHHHhccc--------C-CC-------hHHHHHHHHHHhccCCceE
Q psy16693 12 IYYQVDLTGTA------EKSECQVYLTPDNSLSALQSIQNVS--------S-SN-------PIAREIRNLLDKNKHVFSL 69 (196)
Q Consensus 12 ~~~~~e~~~~~------~~~~~~~i~I~tDs~sal~~l~~~~--------~-~~-------~~~~~i~~l~~~~~~~~~v 69 (196)
+.+.||+.|+. ......++.|+|||++++++|.+|. . .+ .++++|.+++. ++.|
T Consensus 49 tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~----~~~v 124 (154)
T 2qkb_A 49 TNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ----GMDI 124 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT----TCEE
T ss_pred chHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc----CCce
Confidence 46789999865 2355689999999999999999841 1 11 23444444433 3479
Q ss_pred EEEecCCCCCCccchHHhHHHHHHhhc
Q psy16693 70 HFTWVPSHVGIAGNEEADRLAKEALSS 96 (196)
Q Consensus 70 ~~~WvpgH~gi~gNe~aD~~A~~a~~~ 96 (196)
.|.|||||+|++|||.||+||++|+..
T Consensus 125 ~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 125 QWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred EEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 999999999999999999999999876
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.65 E-value=2.9e-16 Score=120.43 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHH----hcCCCEEEEecccHHHHHHHhc-cc--------C-C-------ChHHHHHHHHHHhccCCceEE
Q psy16693 12 IYYQVDLTGTAE----KSECQVYLTPDNSLSALQSIQN-VS--------S-S-------NPIAREIRNLLDKNKHVFSLH 70 (196)
Q Consensus 12 ~~~~~e~~~~~~----~~~~~~i~I~tDs~sal~~l~~-~~--------~-~-------~~~~~~i~~l~~~~~~~~~v~ 70 (196)
+...||+.|+.. -....++.|+|||++++++|.. |. . + ..+.+++.+++.. +.|.
T Consensus 43 Tnn~aEl~A~~~AL~~~~~~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~----~~v~ 118 (146)
T 3h08_A 43 TNNRMELMAAIKGLEALKEPARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL----HRVT 118 (146)
T ss_dssp CHHHHHHHHHHHHHHTCSSCCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH----SEEE
T ss_pred cHHHHHHHHHHHHHHhcCccCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh----CceE
Confidence 367899998752 1236799999999999999998 31 0 1 1355566666554 3699
Q ss_pred EEecCCCCCCccchHHhHHHHHHhhc
Q psy16693 71 FTWVPSHVGIAGNEEADRLAKEALSS 96 (196)
Q Consensus 71 ~~WvpgH~gi~gNe~aD~~A~~a~~~ 96 (196)
|.|||||+|++|||.||+||++|+..
T Consensus 119 ~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 119 FHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp EEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred EEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.62 E-value=8.8e-16 Score=120.87 Aligned_cols=85 Identities=24% Similarity=0.179 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHH---hcCCCEEEEecccHHHHHHHhcccCCChH--HHHHHHHHHhccCCceEEEEecCCCCC-----Cc
Q psy16693 12 IYYQVDLTGTAE---KSECQVYLTPDNSLSALQSIQNVSSSNPI--AREIRNLLDKNKHVFSLHFTWVPSHVG-----IA 81 (196)
Q Consensus 12 ~~~~~e~~~~~~---~~~~~~i~I~tDs~sal~~l~~~~~~~~~--~~~i~~l~~~~~~~~~v~~~WvpgH~g-----i~ 81 (196)
+.+.+|+.|+.. .....++.|+|||+++++++-......++ ...+++++.....+..|.|.|||||+| ++
T Consensus 62 Tnn~aEl~Ai~~AL~~~~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~ 141 (165)
T 3p1g_A 62 SAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEAR 141 (165)
T ss_dssp CHHHHHHHHHHHHHHHTBTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHH
T ss_pred cHHHHHHHHHHHHHHHccCceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcch
Confidence 478999998752 23578999999999999999211112222 233566655544566999999999999 99
Q ss_pred cchHHhHHHHHHhhc
Q psy16693 82 GNEEADRLAKEALSS 96 (196)
Q Consensus 82 gNe~aD~~A~~a~~~ 96 (196)
|||.||+||++|+..
T Consensus 142 gNe~AD~LA~~aa~~ 156 (165)
T 3p1g_A 142 GNRMADQAAREAAMK 156 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999988
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.60 E-value=1.6e-15 Score=118.14 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHH--h--cCCCEEEEecccHHHHHHHhcc--------cC-C------C-hHHHHHHHHHHhccCCceEEE
Q psy16693 12 IYYQVDLTGTAE--K--SECQVYLTPDNSLSALQSIQNV--------SS-S------N-PIAREIRNLLDKNKHVFSLHF 71 (196)
Q Consensus 12 ~~~~~e~~~~~~--~--~~~~~i~I~tDs~sal~~l~~~--------~~-~------~-~~~~~i~~l~~~~~~~~~v~~ 71 (196)
+...||+.|+.. + ....++.|+|||++++++|..| +. . + .+.+.|.+++. ...|.|
T Consensus 45 tn~~aEl~A~~~AL~~~~~~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~----~~~v~~ 120 (158)
T 2e4l_A 45 TNNRMELLAPIVALEALKEPCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ----LHQIDW 120 (158)
T ss_dssp CHHHHHHHHHHHHHHTCSSCCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT----TSEEEE
T ss_pred ccHHHHHHHHHHHHHHhccCCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc----cCcEEE
Confidence 467899998752 1 2237999999999999999983 21 1 1 23444554443 248999
Q ss_pred EecCCCCCCccchHHhHHHHHHhhc
Q psy16693 72 TWVPSHVGIAGNEEADRLAKEALSS 96 (196)
Q Consensus 72 ~WvpgH~gi~gNe~aD~~A~~a~~~ 96 (196)
.|||||+|++|||.||+||++|+..
T Consensus 121 ~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 121 RWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred EEccCCCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999987
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.60 E-value=1.4e-15 Score=118.15 Aligned_cols=82 Identities=22% Similarity=0.311 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHH--h--cCCCEEEEecccHHHHHHHhcc--------c-CC------C-hHHHHHHHHHHhccCCceEEE
Q psy16693 12 IYYQVDLTGTAE--K--SECQVYLTPDNSLSALQSIQNV--------S-SS------N-PIAREIRNLLDKNKHVFSLHF 71 (196)
Q Consensus 12 ~~~~~e~~~~~~--~--~~~~~i~I~tDs~sal~~l~~~--------~-~~------~-~~~~~i~~l~~~~~~~~~v~~ 71 (196)
+...||+.|+.. + ....++.|+|||++++++|..| + .+ + .+.++|.+++. ...|.|
T Consensus 43 tn~~aEl~A~~~aL~~~~~~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~----~~~v~~ 118 (155)
T 1jl1_A 43 TNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG----QHQIKW 118 (155)
T ss_dssp CHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT----TCEEEE
T ss_pred cHHHHHHHHHHHHHHHhCcCCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc----cCceEE
Confidence 467899998752 1 2247999999999999999973 1 11 1 23344443332 358999
Q ss_pred EecCCCCCCccchHHhHHHHHHhhcC
Q psy16693 72 TWVPSHVGIAGNEEADRLAKEALSSN 97 (196)
Q Consensus 72 ~WvpgH~gi~gNe~aD~~A~~a~~~~ 97 (196)
.|||||+|++|||.||+||++|+..+
T Consensus 119 ~wV~gH~g~~~Ne~AD~LA~~a~~~~ 144 (155)
T 1jl1_A 119 EWVKGHAGHPENERADELARAAAMNP 144 (155)
T ss_dssp EECCSSTTCHHHHHHHHHHHHHHHSC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999874
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.57 E-value=3.2e-15 Score=117.49 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHH--h--cCCCEEEEecccHHHHHHHhc-c--------c-CCC-------hHHHHHHHHHHhccCCceEE
Q psy16693 12 IYYQVDLTGTAE--K--SECQVYLTPDNSLSALQSIQN-V--------S-SSN-------PIAREIRNLLDKNKHVFSLH 70 (196)
Q Consensus 12 ~~~~~e~~~~~~--~--~~~~~i~I~tDs~sal~~l~~-~--------~-~~~-------~~~~~i~~l~~~~~~~~~v~ 70 (196)
+...||+.|+.. + ....+|.|+|||++++++|.+ | | .++ .++++|.+++.. ..|.
T Consensus 47 Tnn~aEl~Ai~~AL~~~~~~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~----~~v~ 122 (166)
T 1ril_A 47 TNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP----HRVR 122 (166)
T ss_dssp CHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT----SEEE
T ss_pred cHHHHHHHHHHHHHHHhccCCeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc----CeEE
Confidence 467899998762 1 224589999999999999999 2 2 111 244455544432 4899
Q ss_pred EEecCCCCCCccchHHhHHHHHHhhcC
Q psy16693 71 FTWVPSHVGIAGNEEADRLAKEALSSN 97 (196)
Q Consensus 71 ~~WvpgH~gi~gNe~aD~~A~~a~~~~ 97 (196)
|.|||||+|++|||.||+||++|+...
T Consensus 123 ~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 123 FHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp CCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred EEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999883
No 8
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.52 E-value=2.8e-14 Score=112.26 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCEEEEecccHHHHHHHhccc--------C---CC-----hHHHHHHHHHHhccCCceEEEEecCCCCCC------ccc
Q psy16693 26 ECQVYLTPDNSLSALQSIQNVS--------S---SN-----PIAREIRNLLDKNKHVFSLHFTWVPSHVGI------AGN 83 (196)
Q Consensus 26 ~~~~i~I~tDs~sal~~l~~~~--------~---~~-----~~~~~i~~l~~~~~~~~~v~~~WvpgH~gi------~gN 83 (196)
.+.+|.|+|||+|++++|..|. . .. .+.+++.+++... .+|.|.|||||+|+ +||
T Consensus 74 ~~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~---~~v~~~~VkgH~g~~~~~~~~gN 150 (165)
T 2lsn_A 74 IPGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMK---PDITIQHEKGHQPTNTSIHTEGN 150 (165)
T ss_dssp SSSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHC---TTCEEEECCSSSCSSSCHHHHHH
T ss_pred CCCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCC---CCEEEEEEeCCCCccCCCCChHH
Confidence 4567999999999999998741 1 11 2445555555443 36999999999995 589
Q ss_pred hHHhHHHHHHhhc
Q psy16693 84 EEADRLAKEALSS 96 (196)
Q Consensus 84 e~aD~~A~~a~~~ 96 (196)
|.||+||++|+..
T Consensus 151 e~AD~LA~~gA~~ 163 (165)
T 2lsn_A 151 ALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 9999999999854
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.51 E-value=2.3e-15 Score=116.01 Aligned_cols=83 Identities=13% Similarity=0.061 Sum_probs=63.5
Q ss_pred HHHHHHHHHHH------HhcCCCEEEEecccHHHHHHHhcccCCC-hHHHHHHHHHHhccCCceEEEEecCCCCCCccch
Q psy16693 12 IYYQVDLTGTA------EKSECQVYLTPDNSLSALQSIQNVSSSN-PIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNE 84 (196)
Q Consensus 12 ~~~~~e~~~~~------~~~~~~~i~I~tDs~sal~~l~~~~~~~-~~~~~i~~l~~~~~~~~~v~~~WvpgH~gi~gNe 84 (196)
+.+.||+.|+. .+.+. +|.|+|||+++..-+.+.|..+ +....+.++++.... .|.|.|||||+|++|||
T Consensus 49 tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~--~v~~~wV~gH~g~~~Ne 125 (147)
T 2kq2_A 49 RNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG--IYSFEKVKAHSGNEFND 125 (147)
T ss_dssp CTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST--TCCBCCCCCCCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC--CeeEEEecCcCCCcchH
Confidence 46788888854 23344 8999999998887666655443 444555566655544 79999999999999999
Q ss_pred HHhHHHHHHhhcC
Q psy16693 85 EADRLAKEALSSN 97 (196)
Q Consensus 85 ~aD~~A~~a~~~~ 97 (196)
.||+||++|+...
T Consensus 126 ~AD~LA~~a~~~~ 138 (147)
T 2kq2_A 126 YVDMKAKSALGIR 138 (147)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999873
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.44 E-value=2.2e-13 Score=124.89 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=65.4
Q ss_pred HHHHHHHHHHH--HhcCCCEEEEecccHHHHHHHhccc--CCChHHHHHHHHHHhccCCceEEEEecCCCCCCccchHHh
Q psy16693 12 IYYQVDLTGTA--EKSECQVYLTPDNSLSALQSIQNVS--SSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEAD 87 (196)
Q Consensus 12 ~~~~~e~~~~~--~~~~~~~i~I~tDs~sal~~l~~~~--~~~~~~~~i~~l~~~~~~~~~v~~~WvpgH~gi~gNe~aD 87 (196)
+.+.||+.|+. .+....++.|+|||+++++++.+|. ...++..++.+++.. +..|.|.|||||+|++|||.||
T Consensus 472 TNn~aEl~A~i~aL~~~~~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~~~---~~~v~~~wV~~H~g~~~Ne~AD 548 (555)
T 1mu2_A 472 TNQQAELEAFAMALTDSGPKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEMIK---KEAIYVAWVPAHKGIGGNQEVD 548 (555)
T ss_dssp CHHHHHHHHHHHHHHTSCSEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHHHH---CSEEEEEECCSSSCCTTHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEehHHHHHHHhcccccccHHHHHHHHHHhcc---CCcEEEEEEECCCCChhHHHHH
Confidence 46789999875 3457789999999999999999975 344666766655544 2479999999999999999999
Q ss_pred HHHHHHh
Q psy16693 88 RLAKEAL 94 (196)
Q Consensus 88 ~~A~~a~ 94 (196)
+||++|+
T Consensus 549 ~LA~~a~ 555 (555)
T 1mu2_A 549 HLVSQGI 555 (555)
T ss_dssp HHHHTTC
T ss_pred HHHHhhC
Confidence 9999884
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.39 E-value=3.3e-13 Score=123.76 Aligned_cols=79 Identities=25% Similarity=0.332 Sum_probs=61.4
Q ss_pred HHHHHHHHHHH--HhcCCCEEEEecccHHHHHHHhcccCC--ChHHHHHHHHHHhccCCceEEEEecCCCCCCccchHHh
Q psy16693 12 IYYQVDLTGTA--EKSECQVYLTPDNSLSALQSIQNVSSS--NPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEAD 87 (196)
Q Consensus 12 ~~~~~e~~~~~--~~~~~~~i~I~tDs~sal~~l~~~~~~--~~~~~~i~~l~~~~~~~~~v~~~WvpgH~gi~gNe~aD 87 (196)
+.+.||+.|+. .+.-..++.|+|||+++++++.+|... .++..++.+.+... ..|.|.|||||+|++|||.||
T Consensus 475 TNn~aEl~Ai~~aL~~~~~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l~~~---~~v~~~wV~~H~g~~~Ne~AD 551 (557)
T 2zd1_A 475 TNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKK---EKVYLAWVPAHKGIGGNEQVD 551 (557)
T ss_dssp CHHHHHHHHHHHHHHHSCSEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHHHHC---SEEEEEECCSSSCCTTCCGGG
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHHhcC---CCEEEEEcCCCCCChhHHHHH
Confidence 46789999875 333378999999999999999998653 46666665544432 379999999999999999999
Q ss_pred HHHHHH
Q psy16693 88 RLAKEA 93 (196)
Q Consensus 88 ~~A~~a 93 (196)
+||++|
T Consensus 552 ~LA~~a 557 (557)
T 2zd1_A 552 KLVSAG 557 (557)
T ss_dssp GCC---
T ss_pred HHHhcC
Confidence 999986
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.31 E-value=6e-12 Score=94.37 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHHHHH------HhcCCC----EEEEecccHHHHHHHhcccC-CCh-H---HHHHHHH-HHhccCCceEEEEecC
Q psy16693 12 IYYQVDLTGTA------EKSECQ----VYLTPDNSLSALQSIQNVSS-SNP-I---AREIRNL-LDKNKHVFSLHFTWVP 75 (196)
Q Consensus 12 ~~~~~e~~~~~------~~~~~~----~i~I~tDs~sal~~l~~~~~-~~~-~---~~~i~~l-~~~~~~~~~v~~~Wvp 75 (196)
+.+.||+.|+. .+.+.. ++.|+|||+++++.+.+++. .++ + ..+|.++ +..+. .|.|.|||
T Consensus 44 tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~---~v~~~~V~ 120 (140)
T 3u3g_D 44 TNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVP---NLVFVHIP 120 (140)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCT---TCEEEECC
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCC---cEEEEEcC
Confidence 46789998865 233444 99999999999999999774 342 3 3455555 55433 69999999
Q ss_pred CCCCCccchHHhHHHHHHhhc
Q psy16693 76 SHVGIAGNEEADRLAKEALSS 96 (196)
Q Consensus 76 gH~gi~gNe~aD~~A~~a~~~ 96 (196)
+ ++||.||+||++|+..
T Consensus 121 ~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 121 R----EKNARADELVNEAIDK 137 (140)
T ss_dssp G----GGGHHHHHHHHHHHHH
T ss_pred c----hhhHHHHHHHHHHHHh
Confidence 6 9999999999999864
No 13
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.30 E-value=1.1e-11 Score=93.34 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=60.6
Q ss_pred HHHHHHHHHHH------HhcCCCEEEEecccHHHHHHHhccc-CCCh-HHHHHHHHHHhccCCceEEEEecCCCCCCccc
Q psy16693 12 IYYQVDLTGTA------EKSECQVYLTPDNSLSALQSIQNVS-SSNP-IAREIRNLLDKNKHVFSLHFTWVPSHVGIAGN 83 (196)
Q Consensus 12 ~~~~~e~~~~~------~~~~~~~i~I~tDs~sal~~l~~~~-~~~~-~~~~i~~l~~~~~~~~~v~~~WvpgH~gi~gN 83 (196)
+.+.||+.|+. .+.+..++.|+|||+++++.+.+.| ..++ +...+.++.....+...|.|.|||+ ++|
T Consensus 45 tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N 120 (141)
T 3hst_B 45 TNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARN 120 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGC
T ss_pred chHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----ccc
Confidence 35788888864 3456789999999999999999865 3444 3333333333333335899999997 999
Q ss_pred hHHhHHHHHHhhc
Q psy16693 84 EEADRLAKEALSS 96 (196)
Q Consensus 84 e~aD~~A~~a~~~ 96 (196)
|.||+||++|+..
T Consensus 121 ~~AD~LA~~a~~~ 133 (141)
T 3hst_B 121 TYADRLANDAMDA 133 (141)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999976
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.24 E-value=1.8e-11 Score=93.58 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=61.1
Q ss_pred HHHHHHHHHHH------HhcCCCEEEEecccHHHHHHHhcccCC-C----hHHHHHHHHHHhccCCceEEEEecCCCCCC
Q psy16693 12 IYYQVDLTGTA------EKSECQVYLTPDNSLSALQSIQNVSSS-N----PIAREIRNLLDKNKHVFSLHFTWVPSHVGI 80 (196)
Q Consensus 12 ~~~~~e~~~~~------~~~~~~~i~I~tDs~sal~~l~~~~~~-~----~~~~~i~~l~~~~~~~~~v~~~WvpgH~gi 80 (196)
+...||+.|+. ...+..++.|+|||+++++.+.++|.. + ++.+++.+++..+ +|.|.||||
T Consensus 47 tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~----~v~~~~V~~---- 118 (149)
T 2ehg_A 47 TNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL----NATLIWVPR---- 118 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH----TCEEEECCG----
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC----CEEEEEcCC----
Confidence 36788988864 345667899999999999999998643 2 3455566666654 499999999
Q ss_pred ccchHHhHHHHHHhhc
Q psy16693 81 AGNEEADRLAKEALSS 96 (196)
Q Consensus 81 ~gNe~aD~~A~~a~~~ 96 (196)
++|+.||+||++|+..
T Consensus 119 ~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 119 EENKEADRLSRVAYEL 134 (149)
T ss_dssp GGCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHh
Confidence 6999999999999977
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=97.01 E-value=0.00012 Score=55.73 Aligned_cols=75 Identities=9% Similarity=0.015 Sum_probs=50.7
Q ss_pred HHHHHHHHHHH------HhcCCCEEEEecccHHHHHHHhcccCC-C--------hHHHHHHHHHHhccCCceEEEEecCC
Q psy16693 12 IYYQVDLTGTA------EKSECQVYLTPDNSLSALQSIQNVSSS-N--------PIAREIRNLLDKNKHVFSLHFTWVPS 76 (196)
Q Consensus 12 ~~~~~e~~~~~------~~~~~~~i~I~tDs~sal~~l~~~~~~-~--------~~~~~i~~l~~~~~~~~~v~~~Wvpg 76 (196)
+-..+|+.|+. .+... ++.|+|||+++++.+.+.+.+ + .+.+.+.++..-+. .+.+....|..
T Consensus 50 TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~-~~~~~~~~~kw 127 (142)
T 1zbf_A 50 TNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLN-THTYETPILKW 127 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHH-HCCCCCCEEEC
T ss_pred CcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHh-hCCCceeEEEe
Confidence 35677877754 23333 899999999999999987621 1 24444444432221 23577777888
Q ss_pred CCCCccchHHhH
Q psy16693 77 HVGIAGNEEADR 88 (196)
Q Consensus 77 H~gi~gNe~aD~ 88 (196)
|++.-||..||-
T Consensus 128 ~~~~~ge~pad~ 139 (142)
T 1zbf_A 128 QTDKWGEIKADY 139 (142)
T ss_dssp CHHHHCSCTTCC
T ss_pred ccCccCcCcccc
Confidence 999999999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=93.55 E-value=0.16 Score=37.92 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH-----hcCCCEEEEecccHHHHHHHhcc
Q psy16693 12 IYYQVDLTGTAE-----KSECQVYLTPDNSLSALQSIQNV 46 (196)
Q Consensus 12 ~~~~~e~~~~~~-----~~~~~~i~I~tDs~sal~~l~~~ 46 (196)
+-..+|+.|+.. .....++.|+|||+++++-|.++
T Consensus 44 TNN~aEl~A~i~aL~~l~~~~~~v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 44 TNNMGEFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCCCEEESCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhCCCCEEEEcchHHHHHHHHcC
Confidence 346677777541 12223489999999999999875
No 17
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=20.56 E-value=75 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=12.8
Q ss_pred CCCcC-CCCcccccCCCCCCCCCCCCcc-CCCCCC
Q psy16693 163 GPCIS-HGSPPMLELPATKKPIVSPKKL-CLQTHH 195 (196)
Q Consensus 163 GH~~l-~~yL~r~~~~~~~~~~~~p~C~-Cg~~~~ 195 (196)
||..+ +.+..++. +. +-.|. ||..|-
T Consensus 2 ~h~~~~~sh~r~~G-~g------~~rC~vcGr~~g 29 (56)
T 3iz6_N 2 GHSNVWNSHPKNYG-AG------SRVCRVCGNSHG 29 (56)
T ss_dssp -------CCCCCCC-CC------CCCCSSCCCSCC
T ss_pred CccccccCCccccC-CC------cceeecCCCCcc
Confidence 55554 45555666 22 66886 998774
Done!