RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16693
         (196 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 62  KNKHVFSLHFTWVPSHVGIAGNEEADRLAKEAL 94
           +     +++  WVP+H GI GN+E D L  + +
Sbjct: 94  EMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 126


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 44.9 bits (105), Expect = 6e-07
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 51  PIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSS 96
              R++   L        + F +V  H G   NE  DR A+    S
Sbjct: 98  VKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQS 143


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 54  REIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEA 93
            ++   LD       + + WV  H G   NE AD LA+ A
Sbjct: 99  VDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAA 138


>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 113

 Score = 29.5 bits (66), Expect = 0.097
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 6/61 (9%)

Query: 5  PDTCDEHIYYQVDLTGTAEKSECQ------VYLTPDNSLSALQSIQNVSSSNPIAREIRN 58
               E I   V++T   +   C       + LT     +AL+S+ NVS  + I +  R 
Sbjct: 7  STALRELIEELVNITQNQKAPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIEKTQRM 66

Query: 59 L 59
          L
Sbjct: 67 L 67


>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
           antarctica), form b [TaxId: 34362]}
          Length = 317

 Score = 29.7 bits (66), Expect = 0.21
 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 62  KNKHVFSL-HFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPIN 107
           KN    ++    +V  H G   ++ +  + + AL S +    +    
Sbjct: 208 KNVQAQAVCGPLFVIDHAGSLTSQFSYVVGRSALRSTTGQARSADYG 254


>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 1
           [TaxId: 11676]}
          Length = 110

 Score = 27.6 bits (61), Expect = 0.42
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 23  EKSECQVYLTPDNSLSALQSIQN--VSSSNPIAREIRNLLDKNKHVFSLHFTWVPSH 77
           + S  +V +  D S  AL  IQ     S + +  +I   L K + V+     WVP+H
Sbjct: 58  QDSGLEVNIVTD-SQYALGIIQAQPDQSESELVNQIIEQLIKKEKVY---LAWVPAH 110


>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
           orientalis [TaxId: 31958]}
          Length = 394

 Score = 27.8 bits (60), Expect = 1.00
 Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 1/115 (0%)

Query: 54  REIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDFKRFF 113
             +R ++  +   FS    W P            R     L    PP +T         F
Sbjct: 45  AVVRQVM-GDHQQFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYDPPEHTRLRRKLTPGF 103

Query: 114 KSKILTTWNTEWANLADNKLRQIKEENRPWNPPFSMSRKEQVSITRLRIGPCISH 168
             + +         + +++L +++    P +    ++ K   ++    +G     
Sbjct: 104 TLRKMQRMAPYIEQIVNDRLDEMERAGSPADLIAFVADKVPGAVLCELVGVPRDD 158


>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
          [TaxId: 562]}
          Length = 295

 Score = 27.6 bits (60), Expect = 1.1
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 8/51 (15%)

Query: 47 SSSNPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSN 97
          S+ N   RE   LL +      +  TW            A R  +EA    
Sbjct: 11 STDNLPLREAIMLLREEGMTIHVRVTWEKGD--------AARYVEEARKFG 53


>d1lsha2 f.7.1.1 (A:17-284) Lipovitellin-phosvitin complex;
           beta-sheet shell regions {Lamprey (Ichthyomyzon
           unicuspis) [TaxId: 30308]}
          Length = 268

 Score = 24.6 bits (53), Expect = 7.7
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 6   DTCDEHIYYQVDLTGTAEKSECQVYLTPDNSLSALQSIQNVSSSNPIAREIRNLLDKNKH 65
           + CD  +Y      GTA    C      + +L +           P    I++   +   
Sbjct: 164 NNCDHKVYKT---MGTAYAERCPTCQKMNKNLRSTAVYNYAIFDEPSGYIIKSAHSEEIQ 220

Query: 66  VFSLH 70
             S+ 
Sbjct: 221 QLSVF 225


>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 136

 Score = 24.1 bits (52), Expect = 9.8
 Identities = 11/62 (17%), Positives = 15/62 (24%)

Query: 50  NPIAREIRNLLDKNKHVFSLHFTWVPSHVGIAGNEEADRLAKEALSSNSPPVNTIPINDF 109
           N  A+     + +    F  H       VGIA             S     V+       
Sbjct: 32  NHSAKLHMVAMRRGDRAFYYHSNEGKEIVGIAEIIREAYPDPTDASGKFVCVDIKADKPL 91

Query: 110 KR 111
           K 
Sbjct: 92  KT 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 737,835
Number of extensions: 31734
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 14
Length of query: 196
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 115
Effective length of database: 1,295,466
Effective search space: 148978590
Effective search space used: 148978590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)