BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16694
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 207 bits (528), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 125/163 (76%), Gaps = 1/163 (0%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHCYQTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLE 163
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G T G+LE
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG-TFGPGSLE 221
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 206 bits (524), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 120/154 (77%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHCYQTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 24/100 (24%)
Query: 73 SGIEVLEADTFKLHCYQTLTGVKFMIVGDT-------------------NQSGL-----D 108
SG+ L D F + YQTLTG+KF+ + + + S L D
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176
Query: 109 LILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
L+K+Y LY+DY +K+P YS+EMPIR LFD ++ +++
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 43 RMTTNEKIFLASMFYPLFAIASQLSPE 69
++ +NE + LAS + +FAIASQL+P+
Sbjct: 27 KLNSNEYLILASTLHGVFAIASQLTPK 53
>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 145
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 48 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
+L IY LY ++ +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>pdb|2JSN|A Chain A, Solution Structure Of The Atypical Pdz-Like Domain Of
Synbindin
Length = 96
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTN 47
GH + A+N + DG +VLE+L P ++PV + F RPR+T+N
Sbjct: 50 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSN 96
>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution
Length = 140
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|C Chain C, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 142
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 76 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 134
Query: 146 LLQQH 150
L ++H
Sbjct: 135 LGKKH 139
>pdb|3CUE|C Chain C, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|I Chain I, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|O Chain O, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|U Chain U, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 159
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 52 LASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLIL 111
L M + L +I +LS + I + +++H Y T +G+ F+++ D Q +L
Sbjct: 44 LYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVL 103
Query: 112 KKIY-ELYADYALKN 125
+ IY +Y Y N
Sbjct: 104 QYIYSHIYVKYVSNN 118
>pdb|1F8U|A Chain A, Crystal Structure Of Mutant E202q Of Human
Acetylcholinesterase Complexed With Green Mamba Venom
Peptide Fasciculin-ii
Length = 583
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
L PEPK V++A TF+ CYQ
Sbjct: 48 LPPEPKQPWSGVVDATTFQSVCYQ 71
>pdb|4EY4|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In The Apo State
pdb|4EY4|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In The Apo State
pdb|4EY5|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Huperzine A
pdb|4EY5|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Huperzine A
pdb|4EY6|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Galantamine
pdb|4EY6|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With (-)-Galantamine
pdb|4EY7|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Donepezil
pdb|4EY7|B Chain B, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Donepezil
pdb|4EY8|A Chain A, Crystal Structure Of Recombinant Human
Acetylcholinesterase In Complex With Fasciculin-2
Length = 542
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
L PEPK V++A TF+ CYQ
Sbjct: 47 LPPEPKQPWSGVVDATTFQSVCYQ 70
>pdb|2X8B|A Chain A, Crystal Structure Of Human Acetylcholinesterase
Inhibited By Aged Tabun And Complexed With
Fasciculin-Ii
Length = 583
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
L PEPK V++A TF+ CYQ
Sbjct: 48 LPPEPKQPWSGVVDATTFQSVCYQ 71
>pdb|3LII|A Chain A, Recombinant Human Acetylcholinesterase
pdb|3LII|B Chain B, Recombinant Human Acetylcholinesterase
Length = 540
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
L PEPK V++A TF+ CYQ
Sbjct: 45 LPPEPKQPWSGVVDATTFQSVCYQ 68
>pdb|1B41|A Chain A, Human Acetylcholinesterase Complexed With Fasciculin-Ii,
Glycosylated Protein
Length = 539
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
L PEPK V++A TF+ CYQ
Sbjct: 44 LPPEPKQPWSGVVDATTFQSVCYQ 67
>pdb|2C0P|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0P|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0Q|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0Q|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2JEY|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2JEY|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2WHR|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex
With K027
pdb|2WHR|B Chain B, Crystal Structure Of Acetylcholinesterase In Complex
With K027
pdb|4A23|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
Racemic C5685
pdb|4A23|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
Racemic C5685
pdb|4ARA|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARA|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARB|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution.
pdb|4ARB|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution
Length = 548
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|1Q83|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q83|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q84|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
pdb|1Q84|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
Length = 580
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 79 MPPEPKRPWSGVLDATTFQNVCYQ 102
>pdb|1KU6|A Chain A, Fasciculin 2-Mouse Acetylcholinesterase Complex
Length = 549
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|1MAH|A Chain A, Fasciculin2-Mouse Acetylcholinesterase Complex
pdb|1J06|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In The
Apo Form
pdb|1J06|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In The
Apo Form
pdb|1J07|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1J07|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1N5R|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|1N5R|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|2H9Y|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With M-(N,N,
N-Trimethylammonio)trifluoroacetophenone
pdb|2H9Y|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With M-(N,N,
N-Trimethylammonio)trifluoroacetophenone
pdb|2HA0|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With 4- Ketoamyltrimethylammonium
pdb|2HA0|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With 4- Ketoamyltrimethylammonium
pdb|2HA2|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With Succinylcholine
pdb|2HA2|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With Succinylcholine
pdb|2HA3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With Choline
pdb|2HA3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Complexed With Choline
pdb|2GYU|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Hi-6
pdb|2GYU|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Hi-6
pdb|2GYV|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Ortho-7
pdb|2GYV|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Ortho-7
pdb|2GYW|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Obidoxime
pdb|2GYW|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Obidoxime
pdb|2WLS|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Amts13
pdb|2WLS|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase
In Complex With Amts13
pdb|4BC0|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC1|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 30-min Soak): Cresyl-saligenin-phosphoserine
Adduct
pdb|4BC1|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 30-min Soak): Cresyl-saligenin-phosphoserine
Adduct
pdb|4BC1|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 30-min Soak): Cresyl-saligenin-phosphoserine
Adduct
pdb|4BC1|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By
Cbdp ( 30-min Soak): Cresyl-saligenin-phosphoserine
Adduct
Length = 543
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|4A16|A Chain A, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|B Chain B, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|C Chain C, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|D Chain D, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
Length = 545
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 45 MPPEPKRPWSGVLDATTFQNVCYQ 68
>pdb|2XUF|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUF|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUG|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
pdb|2XUG|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
Length = 544
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|2XUD|A Chain A, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUD|B Chain B, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUH|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUH|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUI|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Wk)
pdb|2XUI|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Wk)
pdb|2XUJ|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUJ|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUK|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUK|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUO|A Chain A, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUO|B Chain B, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUP|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUP|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUQ|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
pdb|2XUQ|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
Length = 543
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|2WHP|B Chain B, Crystal Structure Of Acetylcholinesterase,
Phosphonylated By Sarin And In Complex With Hi-6
Length = 548
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|3DL7|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 534
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 45 MPPEPKRPWSGVLDATTFQNVCYQ 68
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Methamidophos
Length = 535
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 45 MPPEPKRPWSGVLDATTFQNVCYQ 68
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Methamidophos
Length = 536
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Non-Aged Methamidophos
Length = 533
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 45 MPPEPKRPWSGVLDATTFQNVCYQ 68
>pdb|2JGF|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Non-Aged Fenamiphos
pdb|2JGF|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Non-Aged Fenamiphos
pdb|2JGI|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGI|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGK|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Fenamiphos
pdb|2JGK|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Fenamiphos
pdb|2JGL|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Vx And Sarin
pdb|2JGL|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Vx And Sarin
pdb|2JGM|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGM|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase
Inhibited By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JEZ|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JEZ|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JF0|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|2JF0|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|3DL4|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|3DL4|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|2WHP|A Chain A, Crystal Structure Of Acetylcholinesterase,
Phosphonylated By Sarin And In Complex With Hi-6
pdb|2WHQ|A Chain A, Crystal Structure Of Acetylcholinesterase,
Phosphonylated By Sarin (Aged) In Complex With Hi-6
pdb|2WHQ|B Chain B, Crystal Structure Of Acetylcholinesterase,
Phosphonylated By Sarin (Aged) In Complex With Hi-6
pdb|2WU3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In
Complex With Fenamiphos And Hi-6
pdb|2WU3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In
Complex With Fenamiphos And Hi-6
pdb|2WU4|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In
Complex With Fenamiphos And Ortho-7
pdb|2WU4|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In
Complex With Fenamiphos And Ortho-7
pdb|2Y2U|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2U|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2V|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
pdb|2Y2V|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
Length = 548
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|2HA4|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA4|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA5|A Chain A, Crystal Structure Of Mutant S203a Of
Acetylcholinesterase Complexed With Acetylthiocholine
pdb|2HA5|B Chain B, Crystal Structure Of Mutant S203a Of
Acetylcholinesterase Complexed With Acetylthiocholine
pdb|2HA6|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA6|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA7|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
pdb|2HA7|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
Length = 543
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 44 MPPEPKRPWSGVLDATTFQNVCYQ 67
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 45 MPPEPKRPWSGVLDATTFQNVCYQ 68
>pdb|1N5M|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
pdb|1N5M|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
Length = 541
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
>pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain,
Glycosylated Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain,
Glycosylated Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain,
Glycosylated Protein
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain,
Glycosylated Protein
Length = 547
Score = 27.7 bits (60), Expect = 3.4, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQ 89
+ PEPK VL+A TF+ CYQ
Sbjct: 48 MPPEPKRPWSGVLDATTFQNVCYQ 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,759,171
Number of Sequences: 62578
Number of extensions: 182030
Number of successful extensions: 343
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 35
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)