BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16694
(164 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 120/154 (77%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHCYQTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 206 bits (524), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 120/154 (77%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHCYQTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 120/154 (77%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGVDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHC+QTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 120/154 (77%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+L P ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGMDVNGKYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHC+QTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 118/154 (76%)
Query: 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLF 60
GH + A+N + DG +VLE+ ++PV + F RPR+T+NEK+ LASMF+ LF
Sbjct: 60 GHAVLAINGMDVNGKYTADGKEVLEYPGNSANYPVSIRFGRPRLTSNEKLMLASMFHSLF 119
Query: 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120
AI SQLSPE SSGIE+LE DTFKLHC+QTLTG+KF+++ D Q+G+D +L+KIYE+Y+D
Sbjct: 120 AIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSD 179
Query: 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
+ALKNPFYSLEMPIRCELFD +L+ L+ EK G
Sbjct: 180 FALKNPFYSLEMPIRCELFDQNLKLALEVAEKAG 213
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 73/110 (66%), Gaps = 1/110 (0%)
Query: 43 RMTTNEKIFLASMFYPLFAIASQLSP-EPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD 101
+++ N I L S F+ L AIAS LSP SSGIEV+E + FKL C+QT TG+KF ++ D
Sbjct: 26 KLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIAD 85
Query: 102 TNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151
N L+ +L +YELY DY LKNPFY +EM IRC+LFD L LL E
Sbjct: 86 PNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNRLLGVRE 135
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 75/107 (70%)
Query: 44 MTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN 103
+T NE + LA + + AI++Q+SP P SSGI++LEA TF +H QT TG+KF++ +
Sbjct: 26 LTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKK 85
Query: 104 QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150
+ L L+K YELY+DY LKNPFY+LEMPI+C+LFD L+ + H
Sbjct: 86 TTNARLQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132
>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1
SV=1
Length = 219
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 24/100 (24%)
Query: 73 SGIEVLEADTFKLHCYQTLTGVKFMIVGDT-------------------NQSGL-----D 108
SG+ L D F + YQTLTG+KF+ + + + S L D
Sbjct: 117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176
Query: 109 LILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
L+K+Y LY+DY +K+P YS+EMPIR LFD ++ +++
Sbjct: 177 NFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 43 RMTTNEKIFLASMFYPLFAIASQLSPE 69
++ +NE + LAS + +FAIASQL+P+
Sbjct: 27 KLNSNEYLILASTLHGVFAIASQLTPK 53
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 52 LASMFYPLFAIASQLSPEP--KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDL 109
L M Y L A + SP+ +G + T+KLH Y+TL+ +KF+I+ D N L
Sbjct: 36 LFGMLYSLKAFITSSSPKKIDDKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRD 95
Query: 110 ILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 149
LKKIY +++ +Y +KNP Y ++C+ F L L+Q
Sbjct: 96 DLKKIYSQIFVEYVIKNPIYKHGTTVKCDTFINQLNLYLKQ 136
>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus
GN=Trappc1 PE=2 SV=1
Length = 145
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 48 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
+L IY LY ++ +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus
GN=Trappc1 PE=1 SV=1
Length = 145
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 48 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
+L IY LY ++ +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens
GN=TRAPPC1 PE=1 SV=1
Length = 145
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 48 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
+L IY LY + +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus
GN=TRAPPC1 PE=2 SV=1
Length = 145
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 48 EKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
E + M + + + S++SP G + +KLH Y+T TG+K ++ D +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 108 DLILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
+L IY LY + +KNP L ++ ELF + L + ++
Sbjct: 94 RDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVR 135
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY + PIR F+ +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAM-NPFYEVNAPIRSTAFERKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ + ++F+++ D Q G+ +Y+LY +A+ NPFY L PIR F+ +Q
Sbjct: 74 AFAFVLHMRFIMLHDVRQEDGIKNFFNDVYDLYIKFAM-NPFYELNSPIRSSAFERKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ + Y+LY +A+ NPFY + P+R FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFNEAYDLYIKFAM-NPFYEINSPLRSTAFDRKIQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +A+ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 9/72 (12%)
Query: 87 CYQTLTGVKF-MIVGDTNQSGLDL-------ILKKIYELYADYALKNPFYSLEMPIRCEL 138
Y + +G+KF MI G++ S + + ++++ELY L NPFY + PIR
Sbjct: 102 AYISYSGMKFVMIHGNSANSSVVIDDNNMRSFYQEVHELYVK-TLMNPFYKITDPIRSPA 160
Query: 139 FDTHLQNLLQQH 150
FD+ ++ L ++H
Sbjct: 161 FDSRVRTLARKH 172
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +++ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +++ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++F+++ D Q G+ +Y+LY +++ NPFY PIR FD +Q
Sbjct: 74 AFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2
Length = 155
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 83 FKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIY-ELYADYALKNPFYSLEMP------IR 135
+KLH Y+T T ++ + + + L +L++IY LY ++ +K+P Y+ P I
Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137
Query: 136 CELFDTHLQNLLQ 148
CE+F L ++
Sbjct: 138 CEIFRITLDRFVR 150
>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1
SV=1
Length = 159
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 52 LASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLIL 111
L M + L +I +LS + I + +++H Y T +G+ F+++ D Q +L
Sbjct: 44 LYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVL 103
Query: 112 KKIY-ELYADYALKN 125
+ IY +Y Y N
Sbjct: 104 QYIYSHIYVKYVSNN 118
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 87 CYQTLTGVKFMIVGDTNQ-SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQN 145
+ T ++ +++ D Q G+ +Y+LY +A+ NPFY PIR F+ +Q
Sbjct: 74 AFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSTAFERKVQF 132
Query: 146 LLQQH 150
L ++H
Sbjct: 133 LGKKH 137
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 83 FKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIRCE 137
+K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ PI+
Sbjct: 67 YKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDPIQSR 125
Query: 138 LFDTHLQNLL 147
FD + +++
Sbjct: 126 AFDNTVTSMM 135
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 87 CYQTLTGVKFMIVGDTNQSG--LDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQ 144
Y T + ++FM++ NQS + L ++++ELY L +PFY PIR + FD ++
Sbjct: 72 AYVTPSNMRFMLLHQ-NQSADNIKLFFQELHELYIK-TLMSPFYQPNQPIRSQAFDLKVR 129
Query: 145 NLLQQH 150
++ +++
Sbjct: 130 SIARRY 135
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 83 FKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIRCE 137
+K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ I
Sbjct: 67 YKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-IMCNPFYNPGDRIHSR 125
Query: 138 LFDTHLQNLLQQ 149
FDT + +++ Q
Sbjct: 126 AFDTMVNSMMMQ 137
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 83 FKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIRCE 137
+K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ I+
Sbjct: 67 YKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRIQSR 125
Query: 138 LFDTHLQNLLQQ 149
FDT + +++ Q
Sbjct: 126 AFDTMVTSMMVQ 137
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 83 FKLHCYQTLTGVKFMIVGDTNQSGLD-----LILKKIYELYADYALKNPFYSLEMPIRCE 137
+K++ Y T + VKF++V D++ + L + +K++ Y D + NPFY+ I+
Sbjct: 67 YKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTD-VMCNPFYNPGDRIQSR 125
Query: 138 LFDTHLQNLLQQ 149
FDT + +++ Q
Sbjct: 126 AFDTMVTSMMIQ 137
>sp|P04157|PTPRC_RAT Receptor-type tyrosine-protein phosphatase C OS=Rattus norvegicus
GN=Ptprc PE=2 SV=2
Length = 1273
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 11 VIKNGQLDDGTDVLEFLSKPES--FPVKLT-FTRPRMTTNEKIFLASMFYPLFA--IASQ 65
V G DDG D E + P++ P + T FT P ++ + + P F+ +
Sbjct: 21 VTGQGTTDDGLDTTEIVLLPQTDPLPARTTEFTPPSISERGNGSSETTYLPGFSSTLMPH 80
Query: 66 LSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL 107
L+P+P S ADT L LT + G+T+ G+
Sbjct: 81 LTPQPDSQTPSARGADTQTLSSQADLTTLTAAPSGETDPPGV 122
>sp|O94350|CBL_SCHPO Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=str3 PE=3 SV=4
Length = 390
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 72 SSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLE 131
+S + + ++ TFK C + + + G+ +S L + L K+ + + N +L+
Sbjct: 25 ASSVPIYQSATFKQPCLEHMGKFDYTRSGNPTRSVLQVHLAKLMKAKHAFVTSNGMSALD 84
Query: 132 MPIRCELFDTHL 143
M +RC ++H+
Sbjct: 85 MILRCCKSNSHV 96
>sp|Q9ENK7|VP10_CTFVL Microtubule-associated protein VP10 OS=Colorado tick fever virus
(strain USA/Florio N-7180) PE=3 SV=1
Length = 605
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 64 SQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYAL 123
S+LS G VL++DT+ G +V D + GLD LKK L D
Sbjct: 392 SRLSKIFSELGYNVLDSDTY---------GKVLTLVADRGEDGLDDALKKFVRLTPDERK 442
Query: 124 KNP-FYSLEMPIRCELFDTH 142
P + EM CE+F +
Sbjct: 443 AVPSIFETEMDRLCEVFGSR 462
>sp|P22165|VL2_RHPV1 Minor capsid protein L2 OS=Rhesus papillomavirus type 1 GN=L2 PE=3
SV=1
Length = 466
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 50 IFLASMFYPLFAIASQLSPEP--KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN 103
+ + S P F S L P P ++SG V+ A + H Y+ + F+I GD N
Sbjct: 163 VSVTSFTNPTFTEPSVLRPPPPVEASGRLVISASSVSTHSYEEIPMDTFVITGDHN 218
>sp|O74963|NCA2_SCHPO Nuclear control of ATPase protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nca2 PE=3 SV=1
Length = 573
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 58 PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSG--LDLILKKIY 115
P+ I + S I +L+ + + ++L + V DT+ +G LDL+ +++
Sbjct: 333 PILGIFDTIRSNRADSQITLLQTKSLESD-MESLQRMVIDFVSDTSPAGINLDLVKQEVQ 391
Query: 116 ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGV 155
+ Y L+ + L+ PIR + ++ LL Q +KT V
Sbjct: 392 QGDLTYVLQAYEHDLKTPIRTAVSGNLVRTLLIQLQKTKV 431
>sp|Q5ZIZ4|5NTC_CHICK Cytosolic purine 5'-nucleotidase OS=Gallus gallus GN=NT5C2 PE=2
SV=1
Length = 569
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 106 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 148
G DL ++++ + + L N Y P R +FDTH NLL+
Sbjct: 69 GFDLTVERLVSIGYPHELLNFVYDPAFPTRGLVFDTHYGNLLK 111
>sp|Q15GI3|IGS1_PETHY Isoeugenol synthase 1 OS=Petunia hybrida GN=IGS1 PE=1 SV=1
Length = 323
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 95 KFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTG 154
K +I+G T G Y + A +L +P Y+ MP++ D+ LQ LL++ E G
Sbjct: 7 KILILGATGYLGK-------YMVKASISLGHPTYAYVMPLKKNSDDSKLQ-LLKEFESLG 58
Query: 155 VTNACGTL 162
VT G L
Sbjct: 59 VTIFYGEL 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,549,841
Number of Sequences: 539616
Number of extensions: 2296426
Number of successful extensions: 4869
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4843
Number of HSP's gapped (non-prelim): 42
length of query: 164
length of database: 191,569,459
effective HSP length: 108
effective length of query: 56
effective length of database: 133,290,931
effective search space: 7464292136
effective search space used: 7464292136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)