Query psy16694
Match_columns 164
No_of_seqs 143 out of 547
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 19:37:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3369|consensus 100.0 1.4E-43 3E-48 282.3 12.8 144 1-150 55-198 (199)
2 PF04099 Sybindin: Sybindin-li 100.0 2.6E-37 5.7E-42 239.6 12.6 122 26-149 14-142 (142)
3 KOG3368|consensus 100.0 1.7E-33 3.6E-38 215.4 11.6 121 26-150 16-139 (140)
4 COG5122 TRS23 Transport protei 100.0 8.6E-30 1.9E-34 191.4 9.3 109 41-149 25-133 (134)
5 PF04628 Sedlin_N: Sedlin, N-t 99.9 5E-25 1.1E-29 168.4 12.0 119 28-149 2-132 (132)
6 COG5603 TRS20 Subunit of TRAPP 99.7 1E-17 2.2E-22 126.8 9.0 120 29-150 9-135 (136)
7 KOG3444|consensus 99.7 2E-16 4.4E-21 118.1 9.9 100 28-131 8-120 (121)
8 KOG3487|consensus 99.6 5.4E-16 1.2E-20 118.6 8.4 103 47-152 32-138 (139)
9 PF13774 Longin: Regulated-SNA 94.5 0.42 9.2E-06 33.0 8.2 58 60-120 3-62 (83)
10 KOG0861|consensus 89.1 4.1 9E-05 33.4 8.9 89 58-153 43-133 (198)
11 PF08217 DUF1712: Fungal domai 84.1 13 0.00029 35.4 10.8 102 43-151 29-139 (604)
12 PF03164 Mon1: Trafficking pro 63.9 59 0.0013 29.3 9.1 79 32-120 21-101 (415)
13 COG5143 SNC1 Synaptobrevin/VAM 60.6 14 0.0003 30.5 4.0 52 50-103 23-76 (190)
14 PF14685 Tricorn_PDZ: Tricorn 54.3 15 0.00033 26.3 3.0 36 1-41 43-78 (88)
15 KOG0859|consensus 44.7 1.3E+02 0.0028 25.2 7.3 57 61-120 31-89 (217)
16 PF03288 Pox_D5: Poxvirus D5 p 37.3 55 0.0012 22.2 3.6 35 112-149 25-59 (86)
17 PF08800 VirE_N: VirE N-termin 36.2 1.1E+02 0.0024 23.1 5.4 24 81-104 56-81 (136)
18 cd00136 PDZ PDZ domain, also c 31.6 46 0.001 21.1 2.3 33 1-36 34-66 (70)
19 KOG0997|consensus 31.2 1.3E+02 0.0028 28.4 5.8 101 22-127 412-521 (523)
20 TIGR03341 YhgI_GntY IscR-regul 31.2 33 0.00072 27.8 1.8 43 121-163 88-130 (190)
21 PF10407 Cytokin_check_N: Cdc1 27.8 60 0.0013 22.6 2.4 26 94-120 3-28 (73)
22 PRK06488 sulfur carrier protei 27.6 52 0.0011 21.5 2.0 22 2-23 30-56 (65)
23 PRK08364 sulfur carrier protei 25.1 60 0.0013 21.7 2.0 21 3-23 40-61 (70)
24 PF08531 Bac_rhamnosid_N: Alph 24.4 48 0.001 26.0 1.6 21 1-21 14-34 (172)
25 COG3260 Ni,Fe-hydrogenase III 24.3 1.1E+02 0.0024 24.3 3.5 40 78-117 34-73 (148)
26 KOG3132|consensus 23.0 48 0.001 28.8 1.5 30 8-37 144-184 (325)
27 PF09888 DUF2115: Uncharacteri 22.5 1.1E+02 0.0024 24.3 3.3 22 113-134 104-125 (163)
28 PF02597 ThiS: ThiS family; I 22.3 65 0.0014 21.1 1.7 22 2-23 43-68 (77)
29 PF10671 TcpQ: Toxin co-regula 21.0 1.1E+02 0.0024 21.1 2.8 32 120-157 34-65 (84)
30 TIGR01682 moaD molybdopterin c 20.9 84 0.0018 21.2 2.1 22 2-23 49-71 (80)
31 cd00989 PDZ_metalloprotease PD 20.3 78 0.0017 20.5 1.8 14 1-14 33-46 (79)
No 1
>KOG3369|consensus
Probab=100.00 E-value=1.4e-43 Score=282.33 Aligned_cols=144 Identities=61% Similarity=1.008 Sum_probs=141.2
Q ss_pred CceEEeeeCeeecccccCCCcchhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEe
Q psy16694 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEA 80 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t 80 (164)
||.|.+|||++|.|..+.|| ++.+.|+|+.++++.++.++||++.|+|++||+++|++|+||.++++|++.++|
T Consensus 55 ~~~~~~vNg~~v~g~~~~~G------l~~~~~ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ksSGie~Let 128 (199)
T KOG3369|consen 55 GHLVQAVNGENVNGYILYDG------LSSPRNYPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEPKSSGIEVLET 128 (199)
T ss_pred hheeeeecccccccceeccc------ccCccccccccccCCCcccccchhhhhhhhcchhheeeccCCCCCCCceEEEEe
Confidence 78999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHh
Q psy16694 81 DTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150 (164)
Q Consensus 81 ~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~ 150 (164)
++|++|||+|.||+|||+++++....++.+|++||++|.|||+|||||+++|||||++||.+++.++++.
T Consensus 129 dtF~l~~~QTlTG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~~ 198 (199)
T KOG3369|consen 129 DTFTLHIFQTLTGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLESA 198 (199)
T ss_pred ccEEEEEEEccCCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcCCccCcccceeHHHhhHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865
No 2
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=100.00 E-value=2.6e-37 Score=239.63 Aligned_cols=122 Identities=51% Similarity=0.860 Sum_probs=93.5
Q ss_pred hccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCC------CCCCCceeEEEeCCEEEEEEEeCCCeEEEEE
Q psy16694 26 FLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSP------EPKSSGIEVLEADTFKLHCYQTLTGVKFMIV 99 (164)
Q Consensus 26 ~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp------~~~~~g~~~~~t~~ykv~~y~T~TgiKFvli 99 (164)
+++++|+.+.... .+++++||.++|+|++|||++|++||+| .++++|++.++|++||+|||||+||+|||++
T Consensus 14 Iy~~~~~~~~~~~--~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~ 91 (142)
T PF04099_consen 14 IYYREWNRSKNEG--QPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLI 91 (142)
T ss_dssp EEEEETSSSS--E---SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEE
T ss_pred eeehhhCCCCccc--cCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEE
Confidence 4677888776332 3468999999999999999999999999 3446799999999999999999999999999
Q ss_pred ecCCchhH-HHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694 100 GDTNQSGL-DLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 149 (164)
Q Consensus 100 td~~~~~i-r~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~ 149 (164)
||++.+++ +.+++.+|++|+|||+|||||++||||+|++||++|++++++
T Consensus 92 td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~ 142 (142)
T PF04099_consen 92 TDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS 142 (142)
T ss_dssp E-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred ecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence 99998444 555666679999999999999999999999999999999874
No 3
>KOG3368|consensus
Probab=100.00 E-value=1.7e-33 Score=215.42 Aligned_cols=121 Identities=29% Similarity=0.524 Sum_probs=113.2
Q ss_pred hccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch
Q psy16694 26 FLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS 105 (164)
Q Consensus 26 ~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~ 105 (164)
+++++||+++..-. .+++|+++++||++||+.|.+||+|.+..+||.++.|+.||+|+||||||+|||++||++..
T Consensus 16 l~y~EW~r~~~s~~----~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~ 91 (140)
T KOG3368|consen 16 LFYREWNRTKQSGI----PNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAG 91 (140)
T ss_pred EEehhcccccccCC----chhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCcEEEEecCCCcc
Confidence 58999999998632 36778999999999999999999999888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHhhhhcCCCCC--CCCcccchhHHHHHHHHHHHh
Q psy16694 106 GLDLILKKIYE-LYADYALKNPFYS--LEMPIRCELFDTHLQNLLQQH 150 (164)
Q Consensus 106 ~ir~~l~~iy~-lYvdyVlkNPfy~--~~~pI~s~~Fd~~v~~l~~~~ 150 (164)
++|++|++||. +||+||++||+|+ +++||+|+.|...++++++..
T Consensus 92 ~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrsl 139 (140)
T KOG3368|consen 92 SIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRSL 139 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhccC
Confidence 99999999995 9999999999999 999999999999999998854
No 4
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=99.96 E-value=8.6e-30 Score=191.39 Aligned_cols=109 Identities=43% Similarity=0.687 Sum_probs=103.7
Q ss_pred CCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHHHHh
Q psy16694 41 RPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYAD 120 (164)
Q Consensus 41 ~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~lYvd 120 (164)
+.++++||+++|+|++||+++|+.|++|-++++|++.+.+++|.++.|+|.||+|||++++.+..+.+--++++|++|+|
T Consensus 25 et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~~~~k~t~na~~ql~kiY~lYsd 104 (134)
T COG5122 25 ETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVFVAEKRTVNALFQLQKIYSLYSD 104 (134)
T ss_pred ccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999988888887789999999999
Q ss_pred hhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQ 149 (164)
Q Consensus 121 yVlkNPfy~~~~pI~s~~Fd~~v~~l~~~ 149 (164)
||+|||||+++|||+|.+||.+++++++.
T Consensus 105 YV~knPfys~EMPI~c~lFde~lkrm~e~ 133 (134)
T COG5122 105 YVTKNPFYSPEMPIQCSLFDEHLKRMFEG 133 (134)
T ss_pred HhhcCCCCCcccceehhhhhHHHHHHhcC
Confidence 99999999999999999999999998865
No 5
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=99.92 E-value=5e-25 Score=168.44 Aligned_cols=119 Identities=25% Similarity=0.395 Sum_probs=91.3
Q ss_pred cCCCCCCeeeeeCCCCCCch----hhHHHhhhhh-cHHHHHhhhCCCCCCCce--eEEEeCCEEEEEEEeCCCeEEEEEe
Q psy16694 28 SKPESFPVKLTFTRPRMTTN----EKIFLASMFY-PLFAIASQLSPEPKSSGI--EVLEADTFKLHCYQTLTGVKFMIVG 100 (164)
Q Consensus 28 ~~~~n~p~~~~~~~~~~~~n----e~l~l~g~l~-SL~~i~~klsp~~~~~g~--~~~~t~~ykv~~y~T~TgiKFvlit 100 (164)
-++.|.|++++.-....++. ..+ +..++| |||.|++++.... .+.+ .++++++|++|||+|+||+||||++
T Consensus 2 Ig~~n~PLy~~~~~~~~~~~~~~~~~l-~~~~~h~sLD~iee~~~~~~-~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~ 79 (132)
T PF04628_consen 2 IGPNNNPLYIRSFPSEKESSSSDARHL-YQFIAHSSLDVIEEKLWKSS-SDMYLGLLDPFEDYKVYGYVTNTGIKFVLVH 79 (132)
T ss_dssp E-TTS-EEEEEEE--ST-CGHHHHHHH-HHHHHHHHHHHHHHCCHCSS-SCSEEEEEEEETTEEEEEEETTT--EEEEEE
T ss_pred CCCCCcceEEEecCCCcccccchHHHH-HHHHHHHHHHHHHHHHhhcc-cccccCceehhhhHHHHhhhccCceeEEEEE
Confidence 36789999997544222222 234 666667 8999999998722 2333 6688999999999999999999999
Q ss_pred c-----CCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694 101 D-----TNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 149 (164)
Q Consensus 101 d-----~~~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~ 149 (164)
+ .+++++|++|++||++|++ +++||||.+++||+|+.|+++|+++++|
T Consensus 80 ~~~~~~~~d~~ik~fF~~vh~~Y~~-~~~NPF~~~~~~I~S~~Fd~~v~~l~~k 132 (132)
T PF04628_consen 80 DMSDNSIRDEDIKQFFKEVHELYVK-ALCNPFYQPGTPIKSPKFDSRVRALAKK 132 (132)
T ss_dssp CGGG-S--HHHHHHHHHHHHHHHHH-HHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred ecccCCcchHHHHHHHHHHHHHHHH-HccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence 9 3489999999999999999 6789999999999999999999999986
No 6
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=99.74 E-value=1e-17 Score=126.78 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=90.3
Q ss_pred CCCCCCeee-eeCC--CCCCchhhHHH-hhhhh-cHHHHHhhhCCCCCCCceeE-EEeCCEEEEEEEeCCCeEEEEEecC
Q psy16694 29 KPESFPVKL-TFTR--PRMTTNEKIFL-ASMFY-PLFAIASQLSPEPKSSGIEV-LEADTFKLHCYQTLTGVKFMIVGDT 102 (164)
Q Consensus 29 ~~~n~p~~~-~~~~--~~~~~ne~l~l-~g~l~-SL~~i~~klsp~~~~~g~~~-~~t~~ykv~~y~T~TgiKFvlitd~ 102 (164)
++.+.|++- .++. ++.+.+....| --++| ||+.+..+.-..+.+ -+.+ =...+.++++|.+|+|+||++++..
T Consensus 9 g~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~-Y~~~~d~f~~l~IsAYi~pSgmkf~~iH~n 87 (136)
T COG5603 9 GEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTS-YFDCLDSFGDLRISAYIMPSGMKFLFIHQN 87 (136)
T ss_pred ecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhH-HHHHHHhhCCeEEEEEEccCCceEEEEecc
Confidence 445678773 3332 22333333333 13455 899998877665431 1222 2367889999999999999999987
Q ss_pred C-chhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHh
Q psy16694 103 N-QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150 (164)
Q Consensus 103 ~-~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~ 150 (164)
. ..++|.||+++|++|++ .++||||++++||+|+.||.+|+++.|++
T Consensus 88 ~s~~N~rsF~qevHely~k-tLmspfy~~~~pirsqafd~~Vr~~ar~~ 135 (136)
T COG5603 88 QSRKNARSFLQEVHELYAK-TLMSPFYEPDEPIRSQAFDDGVREAARVC 135 (136)
T ss_pred chhhhHHHHHHHHHHHHHH-HhhCcccCCCccccchhhhhhHHHHHHhh
Confidence 5 78999999999999999 67899999999999999999999999875
No 7
>KOG3444|consensus
Probab=99.69 E-value=2e-16 Score=118.05 Aligned_cols=100 Identities=22% Similarity=0.342 Sum_probs=82.3
Q ss_pred cCCCCCCeeeeeCCCCCCchhhHHHhhhhh-cHHHHHhhhCCCCC----CCc-e--eEEEeCCEEEEEEEeCCCeEEEEE
Q psy16694 28 SKPESFPVKLTFTRPRMTTNEKIFLASMFY-PLFAIASQLSPEPK----SSG-I--EVLEADTFKLHCYQTLTGVKFMIV 99 (164)
Q Consensus 28 ~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~-SL~~i~~klsp~~~----~~g-~--~~~~t~~ykv~~y~T~TgiKFvli 99 (164)
.++.|.|++++.-. +.++.+.++.++| ||+.|.+|++...+ ++. + .+++|++||+++|.|+|.+|||++
T Consensus 8 ~g~kn~~lyi~s~t---~~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNTkVKFIlv 84 (121)
T KOG3444|consen 8 AGPKNEPLYIESIT---PKEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNTKVKFILV 84 (121)
T ss_pred EcCCCCccEEEecC---cHHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEeccEEEEEEE
Confidence 46678999988544 5666677777777 99999999964322 111 2 668999999999999999999999
Q ss_pred ecCC-----chhHHHHHHHHHHHHHhhhhcCCCCCCC
Q psy16694 100 GDTN-----QSGLDLILKKIYELYADYALKNPFYSLE 131 (164)
Q Consensus 100 td~~-----~~~ir~~l~~iy~lYvdyVlkNPfy~~~ 131 (164)
+|.+ +.++|++||.+|-+|.| +++||||-++
T Consensus 85 vdssd~avreteiRsv~r~~h~l~td-~~~npfy~pg 120 (121)
T KOG3444|consen 85 VDSSDYAVRETEIRSVFRILHLLYTD-LSCNPFYLPG 120 (121)
T ss_pred EcCCcceehhHHHHHHHHHHHHHHHH-heecceeccC
Confidence 9875 78999999999999999 8999999886
No 8
>KOG3487|consensus
Probab=99.65 E-value=5.4e-16 Score=118.64 Aligned_cols=103 Identities=20% Similarity=0.380 Sum_probs=81.3
Q ss_pred hhhHHHhhhhh-cHHHHHhhhCCCCCCCce--eEEEeCCEEEEEEEeCCCeEEEEEecCC-chhHHHHHHHHHHHHHhhh
Q psy16694 47 NEKIFLASMFY-PLFAIASQLSPEPKSSGI--EVLEADTFKLHCYQTLTGVKFMIVGDTN-QSGLDLILKKIYELYADYA 122 (164)
Q Consensus 47 ne~l~l~g~l~-SL~~i~~klsp~~~~~g~--~~~~t~~ykv~~y~T~TgiKFvlitd~~-~~~ir~~l~~iy~lYvdyV 122 (164)
+...+=.-++| ||+.+.+-.=..+ +.+ ..-..+.+-|++|+|++++||++++..+ +++++.||+++|++|++ .
T Consensus 32 ~~~~LN~FI~HAaLdiVde~~W~~s--nmYLktVDkfne~~VSAyvTas~i~f~mlh~~~~~~~ik~Ffqev~elyik-~ 108 (139)
T KOG3487|consen 32 DNRHLNQFIVHAALDIVDELQWTTS--NMYLKTVDKFNELFVSAYVTASHIRFIMLHINRADDNIKLFFQEVHELYIK-T 108 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhhcceeEEEEEccCcEEEEEEeeccccccHHHHHHHHHHHHHH-H
Confidence 33333345566 6877766433221 111 2234678999999999999999999987 78999999999999999 5
Q ss_pred hcCCCCCCCCcccchhHHHHHHHHHHHhhh
Q psy16694 123 LKNPFYSLEMPIRCELFDTHLQNLLQQHEK 152 (164)
Q Consensus 123 lkNPfy~~~~pI~s~~Fd~~v~~l~~~~~~ 152 (164)
++||||.+++||+|+.||.+++-+.+++-.
T Consensus 109 lmnpFy~~~dpirs~afd~kv~~~~rkhl~ 138 (139)
T KOG3487|consen 109 LMNPFYEINDPIRSPAFDHKVRGLARKHLS 138 (139)
T ss_pred HhCcccccCCccccHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999998853
No 9
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=94.46 E-value=0.42 Score=32.99 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=45.3
Q ss_pred HHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHh
Q psy16694 60 FAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYAD 120 (164)
Q Consensus 60 ~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvd 120 (164)
+.|.+|+.|.. ....+++.++|.+|++. ..|+-++++||..-+ -.=.+|++|.+.|..
T Consensus 3 ~~il~~i~~~~--~~k~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~ 62 (83)
T PF13774_consen 3 RKILKRIPPNG--NSKMSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQ 62 (83)
T ss_dssp HHHHHTS-TTS--ESEEEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC--CCeEEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHHHHHHH
Confidence 46777887532 25789999999999999 999999999999843 345688999988877
No 10
>KOG0861|consensus
Probab=89.10 E-value=4.1 Score=33.42 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=57.9
Q ss_pred cHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCC--chhHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q psy16694 58 PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN--QSGLDLILKKIYELYADYALKNPFYSLEMPIR 135 (164)
Q Consensus 58 SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~--~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~ 135 (164)
-=+.++++..|. .++++.-++|++|+|.-+.|+--|+++|.. .-..-.+|++|-+-|.. ++|=-+-.-.-+
T Consensus 43 ~sktvaeRt~~g----~rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~---k~~~~~W~~~~~ 115 (198)
T KOG0861|consen 43 ISKTVAERTGPG----QRQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTT---KVPATQWPVGET 115 (198)
T ss_pred HHHHHHHhcCcc----cccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhh---cCcccccCcCCC
Confidence 346677777663 468899999999999999999999999987 33444577888776644 344311110011
Q ss_pred chhHHHHHHHHHHHhhhc
Q psy16694 136 CELFDTHLQNLLQQHEKT 153 (164)
Q Consensus 136 s~~Fd~~v~~l~~~~~~~ 153 (164)
+..=-..++.++.+|+.|
T Consensus 116 ~~~~~~~L~~~l~kyqdP 133 (198)
T KOG0861|consen 116 ADLSYPYLDTLLSKYQDP 133 (198)
T ss_pred cCCCchhHHHHHHHhcCh
Confidence 112224567777777655
No 11
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=84.12 E-value=13 Score=35.36 Aligned_cols=102 Identities=16% Similarity=0.268 Sum_probs=75.7
Q ss_pred CCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecC-C--------chhHHHHHHH
Q psy16694 43 RMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDT-N--------QSGLDLILKK 113 (164)
Q Consensus 43 ~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~-~--------~~~ir~~l~~ 113 (164)
..+.|+++...|+.-+|-.|++..+|.. .-..+.|+.-++-.++--.|.++++..+. . ...++..|++
T Consensus 29 ~~~~neql~~IGL~qglv~Ft~~Fs~~~---~~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~ 105 (604)
T PF08217_consen 29 ETSLNEQLRQIGLAQGLVSFTRTFSPDD---PCDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQ 105 (604)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHhcCCCC---cccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHH
Confidence 4678899999999999999999999875 34569999999999999999999887661 1 1236777777
Q ss_pred HHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694 114 IYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151 (164)
Q Consensus 114 iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~ 151 (164)
.|+.|.= ..-||-..-. .-+.|..+++.+...+-
T Consensus 106 ~Y~~F~L--~hGsfs~~l~--~r~~L~~~L~~F~~~fl 139 (604)
T PF08217_consen 106 AYSMFRL--FHGSFSSLLE--GREKLKDRLEDFFSRFL 139 (604)
T ss_pred HHHHHHH--HcCCHHHhcc--cHHHHHHHHHHHHHHHH
Confidence 7777754 2345543322 66677777777766654
No 12
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=63.91 E-value=59 Score=29.35 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCc--hhHHH
Q psy16694 32 SFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ--SGLDL 109 (164)
Q Consensus 32 n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~--~~ir~ 109 (164)
-.|+|.+.|. ++..--+.|++.+|-.+.+. .. +.++.+..++.++.+. .-+.+-+|.++...+ ..++.
T Consensus 21 GKPIysr~G~----e~~l~~~~g~~~aiiS~~~~---~~--d~l~~i~~~~~~ivfl-~r~pl~lv~vS~~~e~~~~l~~ 90 (415)
T PF03164_consen 21 GKPIYSRYGD----EDKLSSLMGVIQAIISFFQS---NG--DELRSIRAGDHRIVFL-NRGPLILVAVSKTGESESQLRK 90 (415)
T ss_pred CceeEEecCC----hHHHHHHHHHHHHHHHHHHh---CC--CcEEEEEeCCEEEEEE-ecCCEEEEEEcCCcCCHHHHHH
Confidence 4577877655 44444555555555444432 21 5688999999888855 588999999998763 46777
Q ss_pred HHHHHHHHHHh
Q psy16694 110 ILKKIYELYAD 120 (164)
Q Consensus 110 ~l~~iy~lYvd 120 (164)
.|+-+|..-+-
T Consensus 91 qL~~ly~qils 101 (415)
T PF03164_consen 91 QLDYLYSQILS 101 (415)
T ss_pred HHHHHHHHHHH
Confidence 78888854444
No 13
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=60.57 E-value=14 Score=30.45 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHhhhhh--cHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCC
Q psy16694 50 IFLASMFY--PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTN 103 (164)
Q Consensus 50 l~l~g~l~--SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~ 103 (164)
+.=++++| .++.+-.+++|.-++ ...+++.+|-.|.|.-.+|+.++++++..
T Consensus 23 ~~~~~ff~~~~v~~~l~~~~~~~a~--~~~ies~~~~~~~~~~s~gi~y~~~~~~e 76 (190)
T COG5143 23 LSSFSFFHRSKVKEVLRFLSKTSAS--RASIESGDYFFHYLKMSSGIVYVPISDKE 76 (190)
T ss_pred cCcccccccchHHHHHHHhcccccc--hhccccCceEEEEEecCCCceeEEecccc
Confidence 33345566 688888888887543 68899999999999999999999999986
No 14
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=54.33 E-value=15 Score=26.32 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=26.5
Q ss_pred CceEEeeeCeeecccccCCCcchhhhccCCCCCCeeeeeCC
Q psy16694 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 41 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~~~~~~ 41 (164)
|-++++|||++|+. +.++-.+|.++.+.++.+....
T Consensus 43 GD~I~aInG~~v~~-----~~~~~~lL~~~agk~V~Ltv~~ 78 (88)
T PF14685_consen 43 GDYILAINGQPVTA-----DANPYRLLEGKAGKQVLLTVNR 78 (88)
T ss_dssp T-EEEEETTEE-BT-----TB-HHHHHHTTTTSEEEEEEE-
T ss_pred CCEEEEECCEECCC-----CCCHHHHhcccCCCEEEEEEec
Confidence 67899999998864 4688999999999888876544
No 15
>KOG0859|consensus
Probab=44.66 E-value=1.3e+02 Score=25.25 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCchhH--HHHHHHHHHHHHh
Q psy16694 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGL--DLILKKIYELYAD 120 (164)
Q Consensus 61 ~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~~i--r~~l~~iy~lYvd 120 (164)
.+-+||.+. ++.-.+|..+.|..|...+. |+.+.+++|.+...- =.||.+|++-|.+
T Consensus 31 qiL~klp~~--~n~k~tYs~d~y~Fh~l~~d-g~tylcvadds~gR~ipfaFLe~Ik~~F~k 89 (217)
T KOG0859|consen 31 QILQKLPSS--SNSKFTYSCDGYTFHYLVED-GLTYLCVADDSAGRQIPFAFLERIKEDFKK 89 (217)
T ss_pred HHHHhCCCC--CCCceEEecCCeEEEEEEeC-CeEEEEEEeccccccccHHHHHHHHHHHHH
Confidence 344555443 23467899999999988875 788999998874322 2356666654443
No 16
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=37.31 E-value=55 Score=22.23 Aligned_cols=35 Identities=20% Similarity=0.548 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHH
Q psy16694 112 KKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 149 (164)
Q Consensus 112 ~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~ 149 (164)
..+|++|..|.-.|=... ++....|..+|++++..
T Consensus 25 ~~lY~~Y~~wc~~ng~~~---~ls~~~F~~~L~~~~~~ 59 (86)
T PF03288_consen 25 KDLYDAYKEWCEENGYKP---PLSKRKFGKELKQYFPE 59 (86)
T ss_dssp TBHHHHHHHHHHHTT-S-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHhhh
Confidence 567777777766776544 68999999999998865
No 17
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=36.24 E-value=1.1e+02 Score=23.13 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=18.3
Q ss_pred CCEEEEEEEeCCC--eEEEEEecCCc
Q psy16694 81 DTFKLHCYQTLTG--VKFMIVGDTNQ 104 (164)
Q Consensus 81 ~~ykv~~y~T~Tg--iKFvlitd~~~ 104 (164)
.-|.+.+|.||+| +|+++-.+..+
T Consensus 56 ~p~t~~~f~SpSG~GvKi~v~~~~~~ 81 (136)
T PF08800_consen 56 DPYTLAAFVSPSGRGVKIIVPFDYPD 81 (136)
T ss_pred CCcEEEEEEcCCCCeEEEEEEecCCC
Confidence 3466899999986 89888776553
No 18
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=31.64 E-value=46 Score=21.13 Aligned_cols=33 Identities=39% Similarity=0.378 Sum_probs=16.9
Q ss_pred CceEEeeeCeeecccccCCCcchhhhccCCCCCCee
Q psy16694 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVK 36 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~ 36 (164)
|-.+++|||+++.+.. -.++.+.+...++.++.
T Consensus 34 GD~I~~Ing~~v~~~~---~~~~~~~l~~~~g~~v~ 66 (70)
T cd00136 34 GDVILAVNGTDVKNLT---LEDVAELLKKEVGEKVT 66 (70)
T ss_pred CCEEEEECCEECCCCC---HHHHHHHHhhCCCCeEE
Confidence 3456777777765532 12345555544444443
No 19
>KOG0997|consensus
Probab=31.22 E-value=1.3e+02 Score=28.41 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=64.2
Q ss_pred chhhhccCCCCCCeeeeeCC--CCCCchhhHHHhhhhhcHHHHHhhhCCCCC-------CCceeEEEeCCEEEEEEEeCC
Q psy16694 22 DVLEFLSKPESFPVKLTFTR--PRMTTNEKIFLASMFYPLFAIASQLSPEPK-------SSGIEVLEADTFKLHCYQTLT 92 (164)
Q Consensus 22 ~~~~~~~~~~n~p~~~~~~~--~~~~~ne~l~l~g~l~SL~~i~~klsp~~~-------~~g~~~~~t~~ykv~~y~T~T 92 (164)
.+.-++|...+.+.+...+. |-.+.+|..+|+++.+.++.=.-..++... ..-+..-.|+.|.+||--.|.
T Consensus 412 ~l~HFLy~~ks~~q~~sp~le~p~~~~~erq~L~~~y~rl~~~l~s~s~~l~~i~~~~e~e~llaWvT~~FeLY~i~~p~ 491 (523)
T KOG0997|consen 412 CLRHFLYKSKSSAQFTSPGLEAPYKSETERQRLYAIYARLHSRLHSKSRPLRTIYTVKEKEVLLAWVTGTFELYCIFNPL 491 (523)
T ss_pred cchhheecccccchhcCccccCCcCChHHHHHHHHHHHHHhhhhhccCCcceEEEEecCceEEEEEeccceEEEEecccc
Confidence 46788898888888876555 445666777999998887765544443321 122344456667776665555
Q ss_pred CeEEEEEecCCchhHHHHHHHHHHHHHhhhhcCCC
Q psy16694 93 GVKFMIVGDTNQSGLDLILKKIYELYADYALKNPF 127 (164)
Q Consensus 93 giKFvlitd~~~~~ir~~l~~iy~lYvdyVlkNPf 127 (164)
..|=++ -..++.+++.|-.-+=+|-+.||.
T Consensus 492 vtka~a-----i~~v~KllrWikkeEdRlFI~~~~ 521 (523)
T KOG0997|consen 492 VTKALA-----IKVVNKLLRWIKKEEDRLFIRNPA 521 (523)
T ss_pred hhHHHH-----HHHHHHHHHHHHhhhceEEEecCC
Confidence 544111 356778888887777776666764
No 20
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=31.18 E-value=33 Score=27.84 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=31.5
Q ss_pred hhhcCCCCCCCCcccchhHHHHHHHHHHHhhhcCcccCCcccc
Q psy16694 121 YALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNACGTLE 163 (164)
Q Consensus 121 yVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~~~~~~~ 163 (164)
++++||--....+-..+...++|+++++..=+|-...+||.+|
T Consensus 88 F~f~NPna~~~~~~~~~~~~~~i~~~l~~~irP~l~~dGGdie 130 (190)
T TIGR03341 88 LTLKAPNAKMPKVADDAPLEERINYVLQSEINPQLASHGGKVT 130 (190)
T ss_pred eEEeCCccCCCcCccchHHHHHHHHHHHhccCHHHHhcCCceE
Confidence 5778886554444456667888999998777888888888765
No 21
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=27.80 E-value=60 Score=22.64 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=17.8
Q ss_pred eEEEEEecCCchhHHHHHHHHHHHHHh
Q psy16694 94 VKFMIVGDTNQSGLDLILKKIYELYAD 120 (164)
Q Consensus 94 iKFvlitd~~~~~ir~~l~~iy~lYvd 120 (164)
-||+.+|++. ..+.++.++|=+-|-+
T Consensus 3 kKFLhlt~~~-~tl~~L~~eI~~~f~k 28 (73)
T PF10407_consen 3 KKFLHLTDPN-NTLSQLKEEIEERFKK 28 (73)
T ss_pred cEEEEEeCCC-CcHHHHHHHHHHHHHH
Confidence 4899999984 4555666666665655
No 22
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=27.62 E-value=52 Score=21.48 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.0
Q ss_pred ceEEeeeCeeec-----ccccCCCcch
Q psy16694 2 HVLTAVNDAVIK-----NGQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~-----~~~~~~~~~~ 23 (164)
.+.++|||+.|. .+.|.||..|
T Consensus 30 ~vavavN~~iv~~~~~~~~~L~dgD~I 56 (65)
T PRK06488 30 WLATAVNGELVHKEARAQFVLHEGDRI 56 (65)
T ss_pred eEEEEECCEEcCHHHcCccccCCCCEE
Confidence 356899999997 5678888754
No 23
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=25.11 E-value=60 Score=21.70 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=15.8
Q ss_pred eEEeeeCeeecc-cccCCCcch
Q psy16694 3 VLTAVNDAVIKN-GQLDDGTDV 23 (164)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~ 23 (164)
+++.+||+.|.. +.|.+|..|
T Consensus 40 v~v~vNg~iv~~~~~l~~gD~V 61 (70)
T PRK08364 40 AIAKVNGKVALEDDPVKDGDYV 61 (70)
T ss_pred EEEEECCEECCCCcCcCCCCEE
Confidence 577899998876 667787753
No 24
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=24.37 E-value=48 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.348 Sum_probs=13.6
Q ss_pred CceEEeeeCeeecccccCCCc
Q psy16694 1 GHVLTAVNDAVIKNGQLDDGT 21 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (164)
|++-+.|||+.|..+.|.+|.
T Consensus 14 g~Y~l~vNG~~V~~~~l~P~~ 34 (172)
T PF08531_consen 14 GRYELYVNGERVGDGPLAPGW 34 (172)
T ss_dssp SEEEEEETTEEEEEE------
T ss_pred eeEEEEECCEEeeCCcccccc
Confidence 678899999999998888775
No 25
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=24.28 E-value=1.1e+02 Score=24.26 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=36.4
Q ss_pred EEeCCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHH
Q psy16694 78 LEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYEL 117 (164)
Q Consensus 78 ~~t~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~l 117 (164)
|..+.|.++.-.+|-.--.+|+|.+-...+++-++++|+.
T Consensus 34 YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Yea 73 (148)
T COG3260 34 YDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEA 73 (148)
T ss_pred cchHHheeEEeCCCccccEEEEeccccHHHHHHHHHHHHh
Confidence 5578899999999999999999999999999999999974
No 26
>KOG3132|consensus
Probab=23.01 E-value=48 Score=28.83 Aligned_cols=30 Identities=13% Similarity=0.300 Sum_probs=22.0
Q ss_pred eCeeecc--cccCCCc---------chhhhccCCCCCCeee
Q psy16694 8 NDAVIKN--GQLDDGT---------DVLEFLSKPESFPVKL 37 (164)
Q Consensus 8 ~~~~~~~--~~~~~~~---------~~~~~~~~~~n~p~~~ 37 (164)
||..|.- ..||-|+ .|+||+|++.|+.-++
T Consensus 144 ~G~~v~rF~S~LPGGnrr~~~a~~ytILDCIy~esnQTYYV 184 (325)
T KOG3132|consen 144 NGSTVHRFPSALPGGNRRKGPANSYTILDCIYHESNQTYYV 184 (325)
T ss_pred CCeeEeeccccCCCCCcCCCCcccceeeeeeecccCceEEE
Confidence 4555443 4577665 4899999999999886
No 27
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=22.54 E-value=1.1e+02 Score=24.31 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.7
Q ss_pred HHHHHHHhhhhcCCCCCCCCcc
Q psy16694 113 KIYELYADYALKNPFYSLEMPI 134 (164)
Q Consensus 113 ~iy~lYvdyVlkNPfy~~~~pI 134 (164)
.|=.+|+=||++-|.++++||.
T Consensus 104 ~lis~Y~~FI~~~PlHPvG~~F 125 (163)
T PF09888_consen 104 YLISPYLIFILKEPLHPVGMPF 125 (163)
T ss_pred HHHHHHHHHHhCCCCCCCCCCC
Confidence 3447999999999999999973
No 28
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=22.30 E-value=65 Score=21.05 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=16.8
Q ss_pred ceEEeeeCeeecc----cccCCCcch
Q psy16694 2 HVLTAVNDAVIKN----GQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~~----~~~~~~~~~ 23 (164)
++.+.|||+.+.- +.|.+|..|
T Consensus 43 ~~~v~vN~~~v~~~~~~~~l~~gD~V 68 (77)
T PF02597_consen 43 RVAVAVNGEIVPDDGLDTPLKDGDEV 68 (77)
T ss_dssp TEEEEETTEEEGGGTTTSBEETTEEE
T ss_pred cEEEEECCEEcCCccCCcCcCCCCEE
Confidence 5788999999987 666677643
No 29
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=20.97 E-value=1.1e+02 Score=21.09 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=18.5
Q ss_pred hhhhcCCCCCCCCcccchhHHHHHHHHHHHhhhcCccc
Q psy16694 120 DYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTN 157 (164)
Q Consensus 120 dyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~ 157 (164)
||.+.+|+ .++. .|...|+++++.++..+..+
T Consensus 34 dy~i~~~~-----~~~g-sf~~Av~~l~~~~~~~~~~l 65 (84)
T PF10671_consen 34 DYPIDAPA-----TFSG-SFEDAVKQLFSAYNSAGYPL 65 (84)
T ss_dssp --B--CCC-----CC-E--HHHHHHHHHHHHGGGTEEE
T ss_pred CEEecCce-----EecC-cHHHHHHHHHHHHHhCCCCe
Confidence 55554444 4555 88899999998887766543
No 30
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=20.87 E-value=84 Score=21.18 Aligned_cols=22 Identities=32% Similarity=0.675 Sum_probs=16.2
Q ss_pred ceEEeeeCeeecc-cccCCCcch
Q psy16694 2 HVLTAVNDAVIKN-GQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~ 23 (164)
.+.++|||+.+.. +.|.||..|
T Consensus 49 ~~~v~vn~~~v~~~~~l~dgDev 71 (80)
T TIGR01682 49 QVMVAVNEEYVTDDALLNEGDEV 71 (80)
T ss_pred ceEEEECCEEcCCCcCcCCCCEE
Confidence 4578999999865 677777643
No 31
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=20.29 E-value=78 Score=20.48 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.6
Q ss_pred CceEEeeeCeeecc
Q psy16694 1 GHVLTAVNDAVIKN 14 (164)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (164)
|-.+++|||+++.+
T Consensus 33 GD~I~~ing~~i~~ 46 (79)
T cd00989 33 GDRILAINGQKIKS 46 (79)
T ss_pred CCEEEEECCEECCC
Confidence 55789999999875
Done!