Query psy16694
Match_columns 164
No_of_seqs 143 out of 547
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 19:37:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_D Trafficking protein par 100.0 2.3E-48 7.7E-53 319.6 17.3 159 1-159 60-218 (219)
2 2j3t_C Trafficking protein par 100.0 5.7E-38 2E-42 242.8 12.2 125 27-151 8-138 (145)
3 3cue_A Transport protein parti 100.0 6.6E-36 2.3E-40 245.2 14.0 119 27-151 17-219 (219)
4 3cue_C Transport protein parti 100.0 1.6E-35 5.5E-40 232.6 10.4 109 43-151 35-157 (159)
5 2j3w_A Sedlin, trafficking pro 100.0 2.6E-29 8.8E-34 193.3 14.5 122 27-151 11-140 (142)
6 3pr6_A Trapp-associated protei 99.8 1.7E-18 5.7E-23 136.4 12.3 105 27-132 15-134 (162)
7 2nut_C Vesicle-trafficking pro 96.4 0.042 1.4E-06 43.0 11.2 91 59-153 38-130 (196)
8 3bw6_A Synaptobrevin homolog Y 95.7 0.047 1.6E-06 41.0 7.9 88 58-153 47-139 (144)
9 4b93_A Vesicle-associated memb 94.8 0.29 9.8E-06 38.2 10.3 88 61-153 32-121 (189)
10 3kyq_A YKT6, synaptobrevin hom 94.6 0.13 4.4E-06 40.9 7.8 89 57-153 43-134 (199)
11 2vx8_A Nucleoporin-like protei 92.7 0.51 1.7E-05 36.5 8.0 87 59-151 72-161 (169)
12 4afi_A AP-3 complex subunit de 90.9 3.6 0.00012 31.8 11.0 77 73-152 93-172 (173)
13 2wx3_A MRNA-decapping enzyme 1 53.5 8.1 0.00028 24.5 2.2 13 108-120 28-40 (51)
14 2x5c_A Hypothetical protein OR 50.6 34 0.0012 24.6 5.4 42 82-123 61-111 (131)
15 2wx4_A DCP1, decapping protein 39.9 11 0.00037 23.4 1.2 12 109-120 27-38 (46)
16 3dwg_C 9.5 kDa culture filtrat 29.7 27 0.00093 23.2 2.0 22 2-23 58-84 (93)
17 2g1e_A Hypothetical protein TA 26.0 29 0.001 22.6 1.6 22 2-23 55-81 (90)
18 1fm0_D Molybdopterin convertin 25.9 35 0.0012 21.8 2.0 22 2-23 50-72 (81)
19 1f0z_A THis protein; ubiquitin 25.9 39 0.0013 21.1 2.1 22 2-23 31-57 (66)
20 3soe_A Membrane-associated gua 25.3 38 0.0013 24.0 2.2 37 1-37 53-100 (113)
21 1tyg_B YJBS; alpha beta barrel 24.3 38 0.0013 23.1 2.0 21 3-23 53-78 (87)
22 3po0_A Small archaeal modifier 22.6 39 0.0013 22.2 1.7 22 2-23 58-80 (89)
23 1r6j_A Syntenin 1; PDZ, membra 21.7 41 0.0014 22.3 1.7 32 1-36 44-75 (82)
24 2cu3_A Unknown function protei 21.6 54 0.0018 20.4 2.2 22 2-23 29-55 (64)
25 3bua_E HSNM1B, DNA cross-LINK 20.7 18 0.0006 21.1 -0.3 30 117-147 6-35 (36)
26 1rws_A Hypothetical protein PF 20.7 40 0.0014 21.8 1.4 21 3-23 47-68 (77)
27 3rpf_C Molybdopterin convertin 20.3 50 0.0017 21.0 1.9 21 3-23 43-65 (74)
28 2q5w_D Molybdopterin convertin 20.3 49 0.0017 20.9 1.8 20 4-23 48-68 (77)
No 1
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=2.3e-48 Score=319.58 Aligned_cols=159 Identities=58% Similarity=1.007 Sum_probs=152.8
Q ss_pred CceEEeeeCeeecccccCCCcchhhhccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEe
Q psy16694 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEA 80 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t 80 (164)
||+++++||.+|.|++++||+++++++.++.|+|++++...+++++|++++|+|++|||++|++|++|.+++.|+++++|
T Consensus 60 ~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f~~~l~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T 139 (219)
T 2j3t_D 60 GHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLET 139 (219)
T ss_dssp TCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEE
T ss_pred cceeeecCCccCCCcccccCceeeeeeecCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred CCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhhhcCcccCC
Q psy16694 81 DTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHEKTGVTNAC 159 (164)
Q Consensus 81 ~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~~~ 159 (164)
++|++|||+|+||+|||++||++++++|++|++||++|+|||+|||||+++|||+|+.||++|+++++++++.|+...+
T Consensus 140 ~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~~~~~~~~ 218 (219)
T 2j3t_D 140 DTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPG 218 (219)
T ss_dssp SSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTTSCCC---
T ss_pred CceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhccCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876543
No 2
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=5.7e-38 Score=242.84 Aligned_cols=125 Identities=23% Similarity=0.447 Sum_probs=112.7
Q ss_pred ccCCCCCCeeeeeCC----CCCC-chhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEec
Q psy16694 27 LSKPESFPVKLTFTR----PRMT-TNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGD 101 (164)
Q Consensus 27 ~~~~~n~p~~~~~~~----~~~~-~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd 101 (164)
+-++.+.|++.+--. ++++ +|+.++++|++|||++|++|++|.++++|+++++|++|++|||+|+||+|||++||
T Consensus 8 Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td 87 (145)
T 2j3t_C 8 LFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTD 87 (145)
T ss_dssp EECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEEC
T ss_pred EEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEec
Confidence 345566777754221 2455 88999999999999999999999887889999999999999999999999999999
Q ss_pred CCchhHHHHHHHHH-HHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694 102 TNQSGLDLILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151 (164)
Q Consensus 102 ~~~~~ir~~l~~iy-~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~ 151 (164)
++++++|++|++|| ++|+|||+|||||+++|||+|++||.+|+++++++.
T Consensus 88 ~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 88 LGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP 138 (145)
T ss_dssp TTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence 99999999999999 899999999999999999999999999999999886
No 3
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=245.22 Aligned_cols=119 Identities=39% Similarity=0.678 Sum_probs=108.3
Q ss_pred ccCCCCCCeeeeeCCCCCCchhhHHHhhhhhcHHHHHhhhCCCC------------------------------------
Q psy16694 27 LSKPESFPVKLTFTRPRMTTNEKIFLASMFYPLFAIASQLSPEP------------------------------------ 70 (164)
Q Consensus 27 ~~~~~n~p~~~~~~~~~~~~ne~l~l~g~l~SL~~i~~klsp~~------------------------------------ 70 (164)
++++|+.. ..++++||+++|+|+||||++|++||+|.+
T Consensus 17 Y~r~~~~~------~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~~s~~~~~~~~ 90 (219)
T 3cue_A 17 YQRNFTND------EQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRSDTRNGGGNNN 90 (219)
T ss_dssp EEEECSSC------CCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC---------------
T ss_pred eehhhccC------cCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccccccccccccc
Confidence 55666553 245889999999999999999999999965
Q ss_pred ------------------------CCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCc----------------------
Q psy16694 71 ------------------------KSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQ---------------------- 104 (164)
Q Consensus 71 ------------------------~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~---------------------- 104 (164)
...|++++.|++|++|||+|+||+||||+||+..
T Consensus 91 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l 170 (219)
T 3cue_A 91 KHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNL 170 (219)
T ss_dssp -------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CH
T ss_pred ccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccc
Confidence 2348999999999999999999999999999987
Q ss_pred --hhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694 105 --SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151 (164)
Q Consensus 105 --~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~ 151 (164)
+++|++|++||++|||||||||||.++|||+|+.||.+|++++++++
T Consensus 171 ~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~ 219 (219)
T 3cue_A 171 AIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ 219 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999999999999874
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=232.57 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=103.9
Q ss_pred CCCchhhHHHhhhhhcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCchhHHHHHHHHHH-HHHhh
Q psy16694 43 RMTTNEKIFLASMFYPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYE-LYADY 121 (164)
Q Consensus 43 ~~~~ne~l~l~g~l~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~~ir~~l~~iy~-lYvdy 121 (164)
+.++|+.++++|++|||++|++|++|.+..+||.+++|++|++|||+|+||+|||++||++++++|++|++||+ +|+||
T Consensus 35 ~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~y 114 (159)
T 3cue_C 35 KQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKY 114 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999887789999999999999999999999999999999999999999996 99999
Q ss_pred hhcCC-----CCCCC--------CcccchhHHHHHHHHHHHhh
Q psy16694 122 ALKNP-----FYSLE--------MPIRCELFDTHLQNLLQQHE 151 (164)
Q Consensus 122 VlkNP-----fy~~~--------~pI~s~~Fd~~v~~l~~~~~ 151 (164)
|+||| ||.++ |||+|++||.+|+++++++.
T Consensus 115 v~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~ 157 (159)
T 3cue_C 115 VSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV 157 (159)
T ss_dssp HHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred HHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence 99999 99999 99999999999999998764
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.96 E-value=2.6e-29 Score=193.28 Aligned_cols=122 Identities=20% Similarity=0.335 Sum_probs=101.0
Q ss_pred ccCCCCCCeeeeeCC--CCCC-chhhHHHh-hhhhcHHHHHhhhCCCCCCCc---eeEEEeCCEEEEEEEeCCCeEEEEE
Q psy16694 27 LSKPESFPVKLTFTR--PRMT-TNEKIFLA-SMFYPLFAIASQLSPEPKSSG---IEVLEADTFKLHCYQTLTGVKFMIV 99 (164)
Q Consensus 27 ~~~~~n~p~~~~~~~--~~~~-~ne~l~l~-g~l~SL~~i~~klsp~~~~~g---~~~~~t~~ykv~~y~T~TgiKFvli 99 (164)
+-++.+.|++.+.-. ++.+ .++..+++ +++||+..+.+++++.+ +| ..+..+++|++|||+|+||+|||++
T Consensus 11 Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~--~~~~l~~~~~~~~y~v~~~~T~tg~Kfvl~ 88 (142)
T 2j3w_A 11 IVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLS--NNMYLKTVDKFNEWFVSAFVTAGHMRFIML 88 (142)
T ss_dssp EECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGC--SCSEEEEEEEETTEEEEEEECTTCCEEEEE
T ss_pred EEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCC--CcceeEeeecccceEEEEEEcCCCcEEEEE
Confidence 456778899876322 2222 23444555 88999888888888753 34 3668899999999999999999999
Q ss_pred ecCC-chhHHHHHHHHHHHHHhhhhcCCCCCCCCcccchhHHHHHHHHHHHhh
Q psy16694 100 GDTN-QSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQHE 151 (164)
Q Consensus 100 td~~-~~~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~~~~~ 151 (164)
+|++ ++++|++|++||++|+|||+ ||||+++|||+|+.||++|+++++++.
T Consensus 89 ~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 89 HDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp ESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence 9995 99999999999999999876 999999999999999999999999984
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.7e-18 Score=136.44 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=82.1
Q ss_pred ccCCCCCCeeeeeCCC-CCCchhhHHHhhhhh-cHHHHHhhhCCCCCC---Cce-eEEEeCCEEEEEEE-eCCCeEEEEE
Q psy16694 27 LSKPESFPVKLTFTRP-RMTTNEKIFLASMFY-PLFAIASQLSPEPKS---SGI-EVLEADTFKLHCYQ-TLTGVKFMIV 99 (164)
Q Consensus 27 ~~~~~n~p~~~~~~~~-~~~~ne~l~l~g~l~-SL~~i~~klsp~~~~---~g~-~~~~t~~ykv~~y~-T~TgiKFvli 99 (164)
+-++.|.|++++.... ..+.|..+.+..++| |||.|+++++..... .++ .++.+++|++|||+ |+||+|||++
T Consensus 15 IIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vKfVl~ 94 (162)
T 3pr6_A 15 LIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLKIVIG 94 (162)
T ss_dssp EECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCEEEEE
T ss_pred EECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceEEEEE
Confidence 3477899999986442 234566788888888 899999999532211 123 57889999999998 9999999999
Q ss_pred ecCC------c--hhHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy16694 100 GDTN------Q--SGLDLILKKIYELYADYALKNPFYSLEM 132 (164)
Q Consensus 100 td~~------~--~~ir~~l~~iy~lYvdyVlkNPfy~~~~ 132 (164)
+|.+ + +++|++|+++|++|++ +++||||.+++
T Consensus 95 ~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk-~l~NPFy~~~d 134 (162)
T 3pr6_A 95 FEQKSLSGADDEFEAINQIFETVRKIYIR-VKCNPLLVSGD 134 (162)
T ss_dssp EEGGGCCCCHHHHHHHHHHHHHHHHHHHH-HHTCTTGGGSC
T ss_pred EccCCcccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence 9863 4 7999999999999999 78999999984
No 7
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.42 E-value=0.042 Score=43.04 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy16694 59 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRC 136 (164)
Q Consensus 59 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s 136 (164)
.+.+.+++.|.+ ....++..+.|.+| |....|+-|++++|..-+ -.-.+|.+|.+.|..-. .+-.-....|...
T Consensus 38 a~~il~ki~~~~--~~r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~-~~~~~~~~~~~~~ 113 (196)
T 2nut_C 38 AKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSF 113 (196)
T ss_dssp HHHHHHHCCTTS--CSEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-TTTTTTCCSTTTT
T ss_pred HHHHHHhcCCCC--CCeEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhc-cchhccccCCCch
Confidence 466778887622 45688999999999 788899999999998743 34568899987666522 2222112235555
Q ss_pred hhHHHHHHHHHHHhhhc
Q psy16694 137 ELFDTHLQNLLQQHEKT 153 (164)
Q Consensus 137 ~~Fd~~v~~l~~~~~~~ 153 (164)
..|+..+.++++.|+.|
T Consensus 114 ~~f~~~l~~~~~~y~~~ 130 (196)
T 2nut_C 114 IEFDTFIQKTKKLYIDS 130 (196)
T ss_dssp GGGHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHhcCc
Confidence 69999999999999765
No 8
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.68 E-value=0.047 Score=41.05 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=58.5
Q ss_pred cHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q psy16694 58 PLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIR 135 (164)
Q Consensus 58 SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~ 135 (164)
--+.|++|+.| ....+++.++|.+|++....|+-+++++|..-+ -.=.+|++|.+-|..-. |-.......+
T Consensus 47 ~ar~i~~r~~~----~~R~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y---~~~~~~~~~~ 119 (144)
T 3bw6_A 47 FAETVASRTGA----GQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAH---PKEEWADVTE 119 (144)
T ss_dssp HHHHHHHHCCT----TEEEEEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHS---CGGGTTTCSS
T ss_pred HHHHHHhhCCC----CceEEEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHc---cchhhhhccc
Confidence 45666666644 256889999999999988999999999998733 34457888887666521 1110111111
Q ss_pred ---chhHHHHHHHHHHHhhhc
Q psy16694 136 ---CELFDTHLQNLLQQHEKT 153 (164)
Q Consensus 136 ---s~~Fd~~v~~l~~~~~~~ 153 (164)
.-.| ..+++++++|+.|
T Consensus 120 ~~~~~~f-~~l~~~i~kYqdp 139 (144)
T 3bw6_A 120 TNDALKM-KQLDTYISKYQDP 139 (144)
T ss_dssp CCGGGCC-THHHHHHHHTSCC
T ss_pred ccCCcch-HHHHHHHHHhCch
Confidence 3345 6777888888765
No 9
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=94.82 E-value=0.29 Score=38.23 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=58.8
Q ss_pred HHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccchh
Q psy16694 61 AIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRCEL 138 (164)
Q Consensus 61 ~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s~~ 138 (164)
.+-+|+.|. ....++..+.|.+| |..-.|+-|++++|..-+ -.-.||.+|.+-|.... .+.-.....+--+..
T Consensus 32 ~iL~kip~~---~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~-~~~~~~~~~~~~~~~ 106 (189)
T 4b93_A 32 QILAKIPSE---NNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSE 106 (189)
T ss_dssp HHHTTCCSS---SEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-GGGGGTCCTTTTHHH
T ss_pred HHHHhCCCC---CCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhc-cccccccCCccccch
Confidence 344555432 46788999999999 777899999999998733 34557888886665421 111111111123467
Q ss_pred HHHHHHHHHHHhhhc
Q psy16694 139 FDTHLQNLLQQHEKT 153 (164)
Q Consensus 139 Fd~~v~~l~~~~~~~ 153 (164)
|+..+++.++.|+.+
T Consensus 107 f~~~l~~~~~~y~d~ 121 (189)
T 4b93_A 107 FSSVLAAQLKHHSEN 121 (189)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHhhhcc
Confidence 999999999999865
No 10
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=94.60 E-value=0.13 Score=40.86 Aligned_cols=89 Identities=11% Similarity=0.179 Sum_probs=60.1
Q ss_pred hcHHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCC-CCCCc
Q psy16694 57 YPLFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFY-SLEMP 133 (164)
Q Consensus 57 ~SL~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy-~~~~p 133 (164)
+.-+.+++++.| ....+++.+.|.+|+|....|+-+++++|..-+ -.-.+|.+|.+-|....-.+-+- ....|
T Consensus 43 f~~r~il~r~~~----~~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~ 118 (199)
T 3kyq_A 43 FTSQLIVERSAK----GSRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPAT 118 (199)
T ss_dssp HHHHHHHHTSCT----TEEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTT
T ss_pred HHHHHHHhcCCC----CCeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccc
Confidence 456677888655 246889999999999999999999999998744 34567888887666522111110 11122
Q ss_pred ccchhHHHHHHHHHHHhhhc
Q psy16694 134 IRCELFDTHLQNLLQQHEKT 153 (164)
Q Consensus 134 I~s~~Fd~~v~~l~~~~~~~ 153 (164)
+ .| ..+++++++|+.|
T Consensus 119 ~---~f-~~l~~~m~~Y~dp 134 (199)
T 3kyq_A 119 I---HY-TALDGHLSRYQNP 134 (199)
T ss_dssp C---CC-CTHHHHHHHTTSG
T ss_pred c---cc-HHHHHHHHHhCCc
Confidence 2 35 5677777778755
No 11
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=92.68 E-value=0.51 Score=36.50 Aligned_cols=87 Identities=11% Similarity=0.174 Sum_probs=52.4
Q ss_pred HHHHHhhhCCCCCCCceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcccc
Q psy16694 59 LFAIASQLSPEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPIRC 136 (164)
Q Consensus 59 L~~i~~klsp~~~~~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI~s 136 (164)
.+.+.+|+.+. .+...++.++|.+|++. -.|+-|++++|..-+ -.-.||.+|.+-|.+. -.+ -.....|..-
T Consensus 72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~-y~~-~~~~a~pysf 145 (169)
T 2vx8_A 72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTT-YGS-RAQTALPYAM 145 (169)
T ss_dssp HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHH-HTT-GGGTCCTTTT
T ss_pred HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHHHHHHHH-hhh-hhhccCCcch
Confidence 45666666652 45788999999999998 469999999998733 3456788888766652 111 1111122221
Q ss_pred -hhHHHHHHHHHHHhh
Q psy16694 137 -ELFDTHLQNLLQQHE 151 (164)
Q Consensus 137 -~~Fd~~v~~l~~~~~ 151 (164)
..|+..+++..+.++
T Consensus 146 ~~eF~~~Lk~~~~~~~ 161 (169)
T 2vx8_A 146 NSEFSSVLAAQLKHHS 161 (169)
T ss_dssp HHHHHHHHSCC-----
T ss_pred hHHHHHHHHHHHHHhc
Confidence 356655555555553
No 12
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=90.88 E-value=3.6 Score=31.80 Aligned_cols=77 Identities=10% Similarity=0.162 Sum_probs=52.2
Q ss_pred CceeEEEeCCEEEEEEEeCCCeEEEEEecCCch--hHHHHHHHHHHHHHhhhhcCCCCCCCCcc-cchhHHHHHHHHHHH
Q psy16694 73 SGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS--GLDLILKKIYELYADYALKNPFYSLEMPI-RCELFDTHLQNLLQQ 149 (164)
Q Consensus 73 ~g~~~~~t~~ykv~~y~T~TgiKFvlitd~~~~--~ir~~l~~iy~lYvdyVlkNPfy~~~~pI-~s~~Fd~~v~~l~~~ 149 (164)
....+++.+.|.+|+.. -.|+-|++++|..-+ -.-.||.+|.+-|...- .+-. ....|- -+..|...|++.++.
T Consensus 93 ~~r~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~~eF~~~y-g~~~-~ta~pya~~~eF~~~L~~~M~~ 169 (173)
T 4afi_A 93 NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRA-QTALPYAMNSEFSSVLAAQLKH 169 (173)
T ss_dssp SEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH-GGGG-GTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHHHHHHHHh-chhh-hhccCcchhHHHHHHHHHHHHH
Confidence 45788999999999887 489999999998743 33457778776555421 1111 011111 145799999999998
Q ss_pred hhh
Q psy16694 150 HEK 152 (164)
Q Consensus 150 ~~~ 152 (164)
++.
T Consensus 170 yn~ 172 (173)
T 4afi_A 170 HSE 172 (173)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 13
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=53.48 E-value=8.1 Score=24.46 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHh
Q psy16694 108 DLILKKIYELYAD 120 (164)
Q Consensus 108 r~~l~~iy~lYvd 120 (164)
.+|+++||++|++
T Consensus 28 ~~Fl~~IHeAYl~ 40 (51)
T 2wx3_A 28 SSFLSTLHEVYLQ 40 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999999999
No 14
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=50.59 E-value=34 Score=24.58 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=31.7
Q ss_pred CEEEEEEEeCCCeEEEEEecCC-------chhHHHHHHHHHHHH--Hhhhh
Q psy16694 82 TFKLHCYQTLTGVKFMIVGDTN-------QSGLDLILKKIYELY--ADYAL 123 (164)
Q Consensus 82 ~ykv~~y~T~TgiKFvlitd~~-------~~~ir~~l~~iy~lY--vdyVl 123 (164)
.-+++.-+|-.|+|.+++-.+. ..++..+|+++.+.= ++||+
T Consensus 61 egsvsivetkngykylvirhpdggthtvpktdisailkelcevkkdleyvl 111 (131)
T 2x5c_A 61 EGSVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELCEVKKDLEYVL 111 (131)
T ss_dssp EEEEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHHHHHHhHHHHH
Confidence 3468889999999999998875 467888888887532 44554
No 15
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=39.94 E-value=11 Score=23.40 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHh
Q psy16694 109 LILKKIYELYAD 120 (164)
Q Consensus 109 ~~l~~iy~lYvd 120 (164)
+|+.+||++|++
T Consensus 27 ~Fl~~iHeAYl~ 38 (46)
T 2wx4_A 27 EFANKLHKAYLN 38 (46)
T ss_dssp THHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 689999999998
No 16
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=29.65 E-value=27 Score=23.19 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=17.8
Q ss_pred ceEEeeeCeeec-----ccccCCCcch
Q psy16694 2 HVLTAVNDAVIK-----NGQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~-----~~~~~~~~~~ 23 (164)
++.+.|||+.|. .+.|.||..|
T Consensus 58 ~~~v~VN~~~v~~~~~~~~~L~~gDeV 84 (93)
T 3dwg_C 58 FVNIYVNDEDVRFSGGLATAIADGDSV 84 (93)
T ss_dssp TEEEEETTEEGGGTTGGGCBCCTTCEE
T ss_pred CEEEEECCEEccCcCCCCcCCCCCCEE
Confidence 578999999997 5888888654
No 17
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=25.96 E-value=29 Score=22.61 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=17.1
Q ss_pred ceEEeeeCeeec-----ccccCCCcch
Q psy16694 2 HVLTAVNDAVIK-----NGQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~-----~~~~~~~~~~ 23 (164)
.+.+.|||+.+. .+.|.||..|
T Consensus 55 ~v~v~vN~~~v~~~~~~~~~l~~gD~V 81 (90)
T 2g1e_A 55 NVIILVNGNNITSMKGLDTEIKDDDKI 81 (90)
T ss_dssp TCEEEESSSBGGGTCSSSCBCCTTCEE
T ss_pred ceEEEECCEEccccCCCCcCCCCCCEE
Confidence 467899999986 5788888753
No 18
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=25.95 E-value=35 Score=21.82 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=16.4
Q ss_pred ceEEeeeCeeecc-cccCCCcch
Q psy16694 2 HVLTAVNDAVIKN-GQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~ 23 (164)
.+.+.|||+.|.- +.|.||..|
T Consensus 50 ~~~v~vN~~~v~~~~~l~~gD~V 72 (81)
T 1fm0_D 50 KLLAAVNQTLVSFDHPLTDGDEV 72 (81)
T ss_dssp TCEEEETTEECCTTCBCCTTCEE
T ss_pred CEEEEECCEECCCCCCCCCCCEE
Confidence 3578999998864 778888653
No 19
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=25.85 E-value=39 Score=21.13 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=16.8
Q ss_pred ceEEeeeCeeec-----ccccCCCcch
Q psy16694 2 HVLTAVNDAVIK-----NGQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~-----~~~~~~~~~~ 23 (164)
.+.+.|||+.|. .+.|.||..|
T Consensus 31 ~v~vavN~~~v~~~~~~~~~L~~gD~v 57 (66)
T 1f0z_A 31 GAALAINQQIVPREQWAQHIVQDGDQI 57 (66)
T ss_dssp SEEEEETTEEECHHHHTTCCCCTTEEE
T ss_pred CEEEEECCEECCchhcCCcCCCCCCEE
Confidence 357899999987 4788888643
No 20
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=25.31 E-value=38 Score=24.04 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=20.6
Q ss_pred CceEEeeeCeeecccc----------cCCCcch-hhhccCCCCCCeee
Q psy16694 1 GHVLTAVNDAVIKNGQ----------LDDGTDV-LEFLSKPESFPVKL 37 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~n~p~~~ 37 (164)
|-.+++|||++|.+-. .+.|..+ +.+.-+..+.|+..
T Consensus 53 GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~p~~~ 100 (113)
T 3soe_A 53 GDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKT 100 (113)
T ss_dssp TCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-----
T ss_pred CCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCccCcccc
Confidence 4578999999999842 4456554 44444444455543
No 21
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=24.33 E-value=38 Score=23.07 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=15.8
Q ss_pred eEEeeeCeeecc-----cccCCCcch
Q psy16694 3 VLTAVNDAVIKN-----GQLDDGTDV 23 (164)
Q Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~ 23 (164)
+.+.|||+.|.- +.|.||..|
T Consensus 53 vaVavNg~iV~~~~~~~~~L~dGD~V 78 (87)
T 1tyg_B 53 VIVERNKEIIGKERYHEVELCDRDVI 78 (87)
T ss_dssp CEEEETTEEECGGGTTTSBCCSSSEE
T ss_pred EEEEECCEECChhhcCCcCCCCCCEE
Confidence 568899998873 678888653
No 22
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=22.56 E-value=39 Score=22.16 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=16.8
Q ss_pred ceEEeeeCeeecc-cccCCCcch
Q psy16694 2 HVLTAVNDAVIKN-GQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~~ 23 (164)
++.+.|||+.|.- +.|.||..|
T Consensus 58 ~~~v~VN~~~v~~~~~l~~gDeV 80 (89)
T 3po0_A 58 HINVLRNGEAAALGEATAAGDEL 80 (89)
T ss_dssp TSEEEETTEECCTTSBCCTTCEE
T ss_pred cEEEEECCEECCCCcccCCCCEE
Confidence 3678999999975 777787644
No 23
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=21.70 E-value=41 Score=22.31 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=20.3
Q ss_pred CceEEeeeCeeecccccCCCcchhhhccCCCCCCee
Q psy16694 1 GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVK 36 (164)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~p~~ 36 (164)
|-.+++|||+.|.+... .++.+.+- ++...+.
T Consensus 44 GD~Il~VNG~~v~~~~~---~evv~llr-~~g~~V~ 75 (82)
T 1r6j_A 44 EHNICEINGQNVIGLKD---SQIADILS-TSGTVVT 75 (82)
T ss_dssp SEEEEEETTEECTTCCH---HHHHHHHH-HSCSEEE
T ss_pred CCEEEEECCEEcCCCCH---HHHHHHHh-cCCCEEE
Confidence 55789999999988653 34555554 3333343
No 24
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=21.62 E-value=54 Score=20.36 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=16.6
Q ss_pred ceEEeeeCeeecc-----cccCCCcch
Q psy16694 2 HVLTAVNDAVIKN-----GQLDDGTDV 23 (164)
Q Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~~ 23 (164)
.+.+.|||+.|.- +.|.||..|
T Consensus 29 ~v~vavN~~~v~~~~~~~~~L~dgD~v 55 (64)
T 2cu3_A 29 GVAVLLNEEAFLGLEVPDRPLRDGDVV 55 (64)
T ss_dssp GEEEEETTEEEEGGGCCCCCCCTTCEE
T ss_pred cEEEEECCEECCccccCCcCCCCCCEE
Confidence 3578899999874 678888753
No 25
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=20.70 E-value=18 Score=21.07 Aligned_cols=30 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred HHHhhhhcCCCCCCCCcccchhHHHHHHHHH
Q psy16694 117 LYADYALKNPFYSLEMPIRCELFDTHLQNLL 147 (164)
Q Consensus 117 lYvdyVlkNPfy~~~~pI~s~~Fd~~v~~l~ 147 (164)
+=++|.+ -|..-......|+.||.+|++..
T Consensus 6 LALKYLL-TPv~~l~a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 6 LALKYLL-TPVNFFQAGYSSRRFDQQVEKYH 35 (36)
T ss_pred HHHHHHh-hhHHHHhcccchhhHHHHHHHhc
Confidence 4456643 66666667788999999998653
No 26
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=20.68 E-value=40 Score=21.85 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=16.3
Q ss_pred eEEeeeCeeecc-cccCCCcch
Q psy16694 3 VLTAVNDAVIKN-GQLDDGTDV 23 (164)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~ 23 (164)
+.+.|||+.|.- +.|.||..|
T Consensus 47 v~VavNg~~v~~~~~L~dGD~V 68 (77)
T 1rws_A 47 AIAKVNGKVVLEDDEVKDGDFV 68 (77)
T ss_dssp SCEEETTEEECSSSCCCSSCCC
T ss_pred EEEEECCEECCCCCCcCCCCEE
Confidence 468899999975 788888753
No 27
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.32 E-value=50 Score=21.02 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=15.7
Q ss_pred eEEeeeCeeecc--cccCCCcch
Q psy16694 3 VLTAVNDAVIKN--GQLDDGTDV 23 (164)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~ 23 (164)
+.+.|||+.|.+ +.|.||..|
T Consensus 43 ~~vavN~~~v~~~~~~l~~gDeV 65 (74)
T 3rpf_C 43 CAIALNDHLIDNLNTPLKDGDVI 65 (74)
T ss_dssp CEEEESSSEECCTTCCCCTTCEE
T ss_pred cEEEECCEEcCCCCcCCCCCCEE
Confidence 578899999654 777788653
No 28
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=20.31 E-value=49 Score=20.88 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.2
Q ss_pred EEeeeCeeecc-cccCCCcch
Q psy16694 4 LTAVNDAVIKN-GQLDDGTDV 23 (164)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~~ 23 (164)
.+.|||+.|.- +.|.||..|
T Consensus 48 ~v~vNg~~v~~~~~L~~gD~V 68 (77)
T 2q5w_D 48 QVAVNEEFVQKSDFIQPNDTV 68 (77)
T ss_dssp EEEETTEEECTTSEECTTCEE
T ss_pred EEEECCEECCCCCCcCCCCEE
Confidence 78999999974 888888753
Done!