RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16694
         (164 letters)



>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 140

 Score = 80.3 bits (198), Expect = 1e-20
 Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 40  TRPRMTTNEKIFLASMF--YPLFAIASQLSPEPKSSGIEVLEA-DTFKLHCYQTLTGVKF 96
              +  + +     + F  +    +  +      +  ++ ++  + + +  + T   ++F
Sbjct: 24  PPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRF 83

Query: 97  MIVGDT-NQSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 150
           +++ D   + G+      +Y+LY  +A+ NPFY    PIR   FD  +Q L ++H
Sbjct: 84  IMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137


>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase,
           C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}
          Length = 105

 Score = 26.4 bits (58), Expect = 0.97
 Identities = 8/56 (14%), Positives = 21/56 (37%)

Query: 82  TFKLHCYQTLTGVKFMIVGDTNQSGLDLILKKIYELYADYALKNPFYSLEMPIRCE 137
            F ++   T+ G    + G+  + G     K I  ++     + P +  ++ +   
Sbjct: 9   RFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAG 64


>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
           esterase) {Bacillus subtilis [TaxId: 1423]}
          Length = 483

 Score = 27.0 bits (58), Expect = 1.2
 Identities = 10/38 (26%), Positives = 14/38 (36%)

Query: 68  PEPKSSGIEVLEADTFKLHCYQTLTGVKFMIVGDTNQS 105
           PEP     +VL+A  +   C Q    +         QS
Sbjct: 41  PEPPEVWEDVLDATAYGPICPQPSDLLSLSYTELPRQS 78


>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
           {Bacillus caldotenax [TaxId: 1395]}
          Length = 413

 Score = 25.5 bits (55), Expect = 4.2
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 125 NPFYSLEMPIRCELFDTHLQNL 146
            P    E  IR E F   ++ +
Sbjct: 202 FPASRDEHCIRVEFFGDEIERI 223


>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 96

 Score = 24.1 bits (52), Expect = 4.8
 Identities = 6/41 (14%), Positives = 15/41 (36%)

Query: 1  GHVLTAVNDAVIKNGQLDDGTDVLEFLSKPESFPVKLTFTR 41
          G  L ++N   +     ++   ++         P ++ F R
Sbjct: 56 GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,131
Number of extensions: 24928
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 7
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)