BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16695
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 52 NLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
NLA D L+K+Y LY+DY +K+P YS+EMPIR LFD ++ +++
Sbjct: 169 NLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
>pdb|1H3Q|A Chain A, Crystal Sturcture Of Sedl At 2.4 Angstroms Resolution
Length = 140
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>pdb|2J3W|A Chain A, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex.
pdb|2J3W|C Chain C, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex
Length = 142
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 96 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 139
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 34 IDVAPTNYQRSGSNEPGRNLASSGLDLILKKIY 66
I+V + R PGRNL +S +DL++ +
Sbjct: 8 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFH 40
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 34 IDVAPTNYQRSGSNEPGRNLASSGLDLILKKIY 66
I+V + R PGRNL +S +DL++ +
Sbjct: 5 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFH 37
>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 145
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 61 ILKKIYE-LYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
+L IY LY ++ +KNP L ++ ELF + L + ++
Sbjct: 96 VLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRS 136
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 34 IDVAPTNYQRSGSNEPGRNLASSGLDLILKKIY 66
I+V + R PGRNL +S +DL++ +
Sbjct: 8 IEVKESTMVRPAQETPGRNLWNSNVDLVVPNFH 40
>pdb|3QQ2|A Chain A, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
pdb|3QQ2|B Chain B, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
pdb|3QQ2|C Chain C, Crystal Structure Of The Beta Domain Of The Bordetella
Autotransporter Brka
Length = 284
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 10 SLRWNEYHPVDNTHLIQ-------QQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLIL 62
LR+ + +++Q QE DV +G+ GR +G+D L
Sbjct: 193 GLRFGRRIALAGGNIVQPYARLGWTQEFKSTGDVRTNGIGHAGAGRHGRVELGAGVDAAL 252
Query: 63 KKIYELYADY 72
K + LYA Y
Sbjct: 253 GKGHNLYASY 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,515,339
Number of Sequences: 62578
Number of extensions: 134148
Number of successful extensions: 220
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 13
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)