BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16695
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 62 LKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
L+K YELY+DY LKNPFY+LEMPI+C+LFD L+ + H
Sbjct: 93 LQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 58 LDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLL 98
L+ +L +YELY DY LKNPFY +EM IRC+LFD L LL
Sbjct: 91 LEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNRLL 131
>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1
SV=1
Length = 219
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 52 NLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
NLA D L+K+Y LY+DY +K+P YS+EMPIR LFD ++ +++
Sbjct: 169 NLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY + PIR F+ +Q L ++H
Sbjct: 94 GIKNFFNDVYDLYVKFAM-NPFYEVNAPIRSTAFERKVQFLGKKH 137
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY L PIR F+ +Q L ++H
Sbjct: 94 GIKNFFNDVYDLYIKFAM-NPFYELNSPIRSSAFERKVQFLGKKH 137
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ + Y+LY +A+ NPFY + P+R FD +Q L ++H
Sbjct: 94 GIKNFFNEAYDLYIKFAM-NPFYEINSPLRSTAFDRKIQFLGKKH 137
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +++ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +++ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +++ NPFY PIR FD +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFSM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 63 KKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
++++ELY L NPFY + PIR FD+ ++ L ++H
Sbjct: 135 QEVHELYVK-TLMNPFYKITDPIRSPAFDSRVRTLARKH 172
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR F+ +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSTAFERKVQFLGKKH 137
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 62 LKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
LKKIY +++ +Y +KNP Y ++C+ F L L+Q
Sbjct: 97 LKKIYSQIFVEYVIKNPIYKHGTTVKCDTFINQLNLYLKQ 136
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 51 RNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
+N ++ + L ++++ELY L +PFY PIR + FD ++++ +++
Sbjct: 86 QNQSADNIKLFFQELHELYIK-TLMSPFYQPNQPIRSQAFDLKVRSIARRY 135
>sp|Q5ZIZ4|5NTC_CHICK Cytosolic purine 5'-nucleotidase OS=Gallus gallus GN=NT5C2 PE=2
SV=1
Length = 569
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 55 SSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
S G DL ++++ + + L N Y P R +FDTH NLL+
Sbjct: 67 SLGFDLTVERLVSIGYPHELLNFVYDPAFPTRGLVFDTHYGNLLK 111
>sp|Q7TT00|SP20H_MOUSE Transcription factor SPT20 homolog OS=Mus musculus GN=Supt20h
PE=1 SV=1
Length = 530
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 27 QQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNP 77
QQ + +D A + + P R SSG I +K+Y+LY + K P
Sbjct: 2 QQAVEQALDCAEYIVESAQQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEP 52
>sp|Q10075|PCS_SCHPO Glutathione gamma-glutamylcysteinyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC3H1.10 PE=2 SV=1
Length = 414
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 50 GRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHL 94
G A+ + LI K+ A LK FY ++P +C FD+ L
Sbjct: 14 GMTNATPNIGLIKNKVVSFEAVGQLKKSFYKRQLPKQCLAFDSSL 58
>sp|Q66HC7|SP20H_RAT Transcription factor SPT20 homolog OS=Rattus norvegicus
GN=Supt20h PE=2 SV=1
Length = 530
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 27 QQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNP 77
QQ + +D A + + P R SSG I +K+Y+LY + K P
Sbjct: 2 QQALEQALDRAEYIVESAQQRPPKRKCLSSGRKSIFQKLYDLYVEECEKEP 52
>sp|Q04Y85|MURE_LEPBL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=murE PE=3 SV=1
Length = 500
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 37 APTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLE 82
A +Y G NE R + ++ DL +K + + +Y + NPF +L+
Sbjct: 242 AVLDYSSPGGNELHRKIRNNLPDLPIKALDGIGGEYKVSNPFLTLQ 287
>sp|Q04V91|MURE_LEPBJ UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain JB197) GN=murE PE=3 SV=1
Length = 500
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 37 APTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLE 82
A +Y G NE R + ++ DL +K + + +Y + NPF +L+
Sbjct: 242 AVLDYSSPGGNELHRKIRNNLPDLPIKALDGIGGEYKVSNPFLTLQ 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,068,841
Number of Sequences: 539616
Number of extensions: 1598454
Number of successful extensions: 3372
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3352
Number of HSP's gapped (non-prelim): 35
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)