Query psy16695
Match_columns 101
No_of_seqs 109 out of 407
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 19:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_C Trafficking protein par 99.9 1.6E-24 5.5E-29 155.3 3.6 75 23-101 62-137 (145)
2 2j3t_D Trafficking protein par 99.8 1.8E-21 6.2E-26 149.7 5.7 74 23-100 135-208 (219)
3 3cue_A Transport protein parti 99.8 1.9E-21 6.7E-26 149.9 5.1 74 23-100 120-217 (219)
4 3cue_C Transport protein parti 99.8 3.5E-21 1.2E-25 140.2 4.9 78 20-101 65-156 (159)
5 2j3w_A Sedlin, trafficking pro 99.8 6.9E-21 2.3E-25 135.3 5.4 69 27-100 69-138 (142)
6 3pr6_A Trapp-associated protei 98.7 3.9E-09 1.3E-13 78.2 2.6 60 23-83 70-134 (162)
7 2wx3_A MRNA-decapping enzyme 1 55.1 7.5 0.00026 23.7 2.2 13 59-71 28-40 (51)
8 2wx4_A DCP1, decapping protein 45.4 8 0.00027 23.2 1.1 12 60-71 27-38 (46)
9 1dp7_P MHC class II transcript 38.5 42 0.0014 21.3 3.9 32 63-98 20-51 (76)
10 1skv_A ORF D-63, hypothetical 27.4 54 0.0018 21.0 2.9 33 55-90 15-47 (69)
11 2jtt_C Calcyclin-binding prote 24.2 26 0.00089 19.6 0.9 13 55-67 5-17 (35)
12 3nkl_A UDP-D-quinovosamine 4-d 21.6 40 0.0014 21.3 1.6 39 25-63 86-124 (141)
13 1bl1_A Parathyroid hormone rec 20.8 29 0.001 19.1 0.6 15 56-70 11-25 (31)
No 1
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=99.89 E-value=1.6e-24 Score=155.26 Aligned_cols=75 Identities=24% Similarity=0.429 Sum_probs=72.1
Q ss_pred hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHH-HHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhhC
Q psy16695 23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIY-ELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101 (101)
Q Consensus 23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VY-eLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk~ 101 (101)
.+++.++..+|.|+|||.+||+ +.+|++++++|.+|++|| ++|+|||||||||++||||+|++||.+|++++++.
T Consensus 62 ~~~~t~~ykl~~~~T~TgiKFv----l~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 62 LSFQTSRYKLHYYETPTGIKVV----MNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137 (145)
T ss_dssp EEEECSSCEEEEEECTTSCEEE----EEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTS
T ss_pred EEEecCCEEEEEEEcCCCCEEE----EEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhC
Confidence 6778999999999999999999 999999999999999999 89999999999999999999999999999999874
No 2
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=99.84 E-value=1.8e-21 Score=149.71 Aligned_cols=74 Identities=43% Similarity=0.729 Sum_probs=71.6
Q ss_pred hhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695 23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100 (101)
Q Consensus 23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk 100 (101)
..++.++..+|.|+|||.+||+ +.+|++++++|.+|++||++|+|||||||||.++|||+|++|+.+|++++++
T Consensus 135 ~~~~T~~ykl~~y~T~TgiKFV----Lltd~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~ 208 (219)
T 2j3t_D 135 EMLETDTFKLHCYQTLTGIKFV----VLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEV 208 (219)
T ss_dssp SEEEESSCEEEEEECTTSCEEE----EEECTTCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHH
T ss_pred eEEecCceEEEEEEcCCCCEEE----EEecCCchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHH
Confidence 6778999999999999999999 9999999999999999999999999999999999999999999999999986
No 3
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.9e-21 Score=149.87 Aligned_cols=74 Identities=30% Similarity=0.485 Sum_probs=69.6
Q ss_pred hhhhhhcccceeeecccccccCCCCCCCCCCCc------------------------hHHHHHHHHHHHHHHhhHhcCCC
Q psy16695 23 HLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLAS------------------------SGLDLILKKIYELYADYALKNPF 78 (101)
Q Consensus 23 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~------------------------~~Ir~~fq~VYeLYVdYVvKNPF 78 (101)
.+++.+.--+|.|+|||.+||+ +.+|++. +++|.||++||++||||||||||
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFV----lltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPF 195 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFV----AISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPS 195 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEE----EEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred EEEEeCCEEEEEEEcCCCCEEE----EEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7788888999999999999998 7777776 88999999999999999999999
Q ss_pred CCCCCcccchhHHHHHHHHHhh
Q psy16695 79 YSLEMPIRCELFDTHLQNLLQQ 100 (101)
Q Consensus 79 Y~~d~PI~SelFd~~V~~lvrk 100 (101)
|.++|||+|++||.+|++++++
T Consensus 196 Y~~~~pI~S~~Fd~~V~~~~~~ 217 (219)
T 3cue_A 196 YSMEMPIRSNLFDEKVKKMVEN 217 (219)
T ss_dssp CCTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCccccHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 4
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.5e-21 Score=140.24 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=73.0
Q ss_pred CcchhhhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHHHHHH-HHHhhHhcCC-----CCCCC--------Ccc
Q psy16695 20 DNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILKKIYE-LYADYALKNP-----FYSLE--------MPI 85 (101)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq~VYe-LYVdYVvKNP-----FY~~d--------~PI 85 (101)
|.=.+++.+...+|.|+|||.+||+ +.+|++++++|.+|++||+ +|||||+||| ||.++ |||
T Consensus 65 ~~f~~~~T~~ykl~~~eT~TgiKFv----l~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI 140 (159)
T 3cue_C 65 NDIRSISTGKYRVHTYCTASGLWFV----LLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKI 140 (159)
T ss_dssp CCEEEEECSSCBEEEECCSSCCEEE----EECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCC
T ss_pred CCeEEEeeCCEEEEEEEeCCCCEEE----EEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCc
Confidence 3347788889999999999999999 9999999999999999997 9999999999 99999 999
Q ss_pred cchhHHHHHHHHHhhC
Q psy16695 86 RCELFDTHLQNLLQQH 101 (101)
Q Consensus 86 ~SelFd~~V~~lvrk~ 101 (101)
+|++||.+|+++++++
T Consensus 141 ~s~~Fd~~l~~~~~~~ 156 (159)
T 3cue_C 141 TNRNFISVLESFLAPM 156 (159)
T ss_dssp CCHHHHHHHHHHTSCC
T ss_pred ccHHHHHHHHHHHHhc
Confidence 9999999999999864
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.82 E-value=6.9e-21 Score=135.34 Aligned_cols=69 Identities=26% Similarity=0.443 Sum_probs=63.9
Q ss_pred hhcccceeeecccccccCCCCCCCCCC-CchHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHHhh
Q psy16695 27 QQEQHRHIDVAPTNYQRSGSNEPGRNL-ASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100 (101)
Q Consensus 27 ~~~~~~~~~~~p~~~~~~~~~~~~s~~-~~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lvrk 100 (101)
+++.-+|.|+|||.+||+ +.+|+ +++++|.+|++||++|+|||+ ||||++++||+|++||.+|++++++
T Consensus 69 ~~~y~v~~~~T~tg~Kfv----l~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~ 138 (142)
T 2j3w_A 69 FNEWFVSAFVTAGHMRFI----MLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKK 138 (142)
T ss_dssp ETTEEEEEEECTTCCEEE----EEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHH
T ss_pred ccceEEEEEEcCCCcEEE----EEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHH
Confidence 345559999999999999 88998 599999999999999999877 9999999999999999999999986
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.9e-09 Score=78.18 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=47.9
Q ss_pred hhhhhhcccceeee-cccccccCCCCCCC--CCCCc--hHHHHHHHHHHHHHHhhHhcCCCCCCCC
Q psy16695 23 HLIQQQEQHRHIDV-APTNYQRSGSNEPG--RNLAS--SGLDLILKKIYELYADYALKNPFYSLEM 83 (101)
Q Consensus 23 ~~~~~~~~~~~~~~-~p~~~~~~~~~~~~--s~~~~--~~Ir~~fq~VYeLYVdYVvKNPFY~~d~ 83 (101)
.|-.+++.-+.-|+ |+|.+||+--.+.. ++.++ ++||.||++||++|++ ++|||||.++.
T Consensus 70 lL~~~e~~~VYGy~iTnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk-~l~NPFy~~~d 134 (162)
T 3pr6_A 70 SIFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIR-VKCNPLLVSGD 134 (162)
T ss_dssp EEEEETTEEEEEEECTTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHH-HHTCTTGGGSC
T ss_pred eEeecCCeEEEEEEEcCCceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence 56667888888887 99999997322111 24567 8999999999999999 88999999983
No 7
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=55.13 E-value=7.5 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.439 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHh
Q psy16695 59 DLILKKIYELYAD 71 (101)
Q Consensus 59 r~~fq~VYeLYVd 71 (101)
.+|+.+||++|+.
T Consensus 28 ~~Fl~~IHeAYl~ 40 (51)
T 2wx3_A 28 SSFLSTLHEVYLQ 40 (51)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4699999999998
No 8
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=45.41 E-value=8 Score=23.18 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHh
Q psy16695 60 LILKKIYELYAD 71 (101)
Q Consensus 60 ~~fq~VYeLYVd 71 (101)
+|+.+||++|++
T Consensus 27 ~Fl~~iHeAYl~ 38 (46)
T 2wx4_A 27 EFANKLHKAYLN 38 (46)
T ss_dssp THHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 589999999998
No 9
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=38.49 E-value=42 Score=21.32 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=26.2
Q ss_pred HHHHHHHHhhHhcCCCCCCCCcccchhHHHHHHHHH
Q psy16695 63 KKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLL 98 (101)
Q Consensus 63 q~VYeLYVdYVvKNPFY~~d~PI~SelFd~~V~~lv 98 (101)
++||+.|+++.-+|= -.|+.+..|-+.|++.+
T Consensus 20 ~~vY~~Y~~~C~~~~----~~pl~~a~FGK~ir~~F 51 (76)
T 1dp7_P 20 STLYNHYLLHSQEQK----LEPVNAASFGKLIRSVF 51 (76)
T ss_dssp HHHHHHHHHHHHHTT----CCCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----CccCCHHHHHHHHHHHC
Confidence 478999999888873 36899999999998765
No 10
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=27.38 E-value=54 Score=21.02 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHHHhhHhcCCCCCCCCcccchhH
Q psy16695 55 SSGLDLILKKIYELYADYALKNPFYSLEMPIRCELF 90 (101)
Q Consensus 55 ~~~Ir~~fq~VYeLYVdYVvKNPFY~~d~PI~SelF 90 (101)
|+++|.+|.-+|++-+|.++-|= +.+.|.-..|
T Consensus 15 D~diReLLSlvheIKID~It~n~---~kekvekAlf 47 (69)
T 1skv_A 15 DEDVRELLSLIHEIKIDRITGNM---DKQKLGKAYF 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheeeeccCC---CHHHHHHHHH
Confidence 57899999999999999776553 3444443333
No 11
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=24.18 E-value=26 Score=19.56 Aligned_cols=13 Identities=69% Similarity=0.920 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHH
Q psy16695 55 SSGLDLILKKIYE 67 (101)
Q Consensus 55 ~~~Ir~~fq~VYe 67 (101)
+.++..||++||+
T Consensus 5 ~~~l~~~fk~iY~ 17 (35)
T 2jtt_C 5 SEGLMNVLKKIYE 17 (35)
T ss_dssp CCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 3458999999984
No 12
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=21.64 E-value=40 Score=21.34 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=27.6
Q ss_pred hhhhcccceeeecccccccCCCCCCCCCCCchHHHHHHH
Q psy16695 25 IQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDLILK 63 (101)
Q Consensus 25 ~~~~~~~~~~~~~p~~~~~~~~~~~~s~~~~~~Ir~~fq 63 (101)
-+|+++++++...|...+.....-..+..++-.+.++|.
T Consensus 86 ~~l~~~gv~v~~vP~~~~~~~~~~~~~~l~~v~iedlLg 124 (141)
T 3nkl_A 86 ESLAKLHVEVLTIPNLDDLVNGKLSIGQLKEVSIDDLLG 124 (141)
T ss_dssp HHHHTTTCEEEECCCHHHHHTTSSCTTCCEECCHHHHHC
T ss_pred HHHHHcCCeEEECCCHHHHhCCCcccccCCCCCHHHcCC
Confidence 358899999999999887654332345566667777764
No 13
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=20.83 E-value=29 Score=19.08 Aligned_cols=15 Identities=7% Similarity=0.244 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHH
Q psy16695 56 SGLDLILKKIYELYA 70 (101)
Q Consensus 56 ~~Ir~~fq~VYeLYV 70 (101)
..-+++|.++|-+|+
T Consensus 11 ~~~~e~FeRL~~iYT 25 (31)
T 1bl1_A 11 TREREVFDRLGMIYT 25 (31)
T ss_dssp CCHHHHHHSSHHHHH
T ss_pred cchHHHHhheeeEEE
Confidence 345789999998885
Done!