Your job contains 1 sequence.
>psy16695
MWSWNYLVPSLRWNEYHPVDNTHLIQQQEQHRHIDVAPTNYQRSGSNEPGRNLASSGLDL
ILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16695
(101 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0260861 - symbol:Trs23 species:7227 "Drosophila me... 191 4.2e-15 1
ZFIN|ZDB-GENE-040426-1734 - symbol:trappc4 "trafficking p... 179 7.9e-14 1
UNIPROTKB|F1NU38 - symbol:TRAPPC4 "Uncharacterized protei... 172 4.4e-13 1
UNIPROTKB|F1NXY8 - symbol:TRAPPC4 "Uncharacterized protei... 172 4.4e-13 1
UNIPROTKB|Q2TBL9 - symbol:TRAPPC4 "Trafficking protein pa... 171 5.6e-13 1
UNIPROTKB|E2RSA9 - symbol:TRAPPC4 "Uncharacterized protei... 171 5.6e-13 1
UNIPROTKB|B4DME1 - symbol:TRAPPC4 "Trafficking protein pa... 171 5.6e-13 1
UNIPROTKB|E9PKS9 - symbol:TRAPPC4 "Trafficking protein pa... 171 5.6e-13 1
UNIPROTKB|E9PQE8 - symbol:TRAPPC4 "Trafficking protein pa... 171 5.6e-13 1
UNIPROTKB|Q9Y296 - symbol:TRAPPC4 "Trafficking protein pa... 171 5.6e-13 1
UNIPROTKB|F2Z5G7 - symbol:TRAPPC4 "Uncharacterized protei... 171 5.6e-13 1
MGI|MGI:1926211 - symbol:Trappc4 "trafficking protein par... 171 5.6e-13 1
RGD|1302991 - symbol:Trappc4 "trafficking protein particl... 171 5.6e-13 1
POMBASE|SPBC3B9.12 - symbol:trs23 "TRAPP complex subunit ... 151 7.4e-11 1
TAIR|locus:2180117 - symbol:AT5G02280 "AT5G02280" species... 150 9.4e-11 1
WB|WBGene00018088 - symbol:F36D4.2 species:6239 "Caenorha... 139 1.4e-09 1
UNIPROTKB|Q20100 - symbol:F36D4.2 "Protein F36D4.2" speci... 139 1.4e-09 1
DICTYBASE|DDB_G0280827 - symbol:trappc4 "trafficking prot... 136 2.9e-09 1
UNIPROTKB|E9PN70 - symbol:TRAPPC4 "Trafficking protein pa... 134 1.0e-08 1
SGD|S000002654 - symbol:TRS23 "Subunit of the transport p... 124 8.0e-08 1
CGD|CAL0000449 - symbol:orf19.3673 species:5476 "Candida ... 118 2.3e-07 1
RGD|6499350 - symbol:LOC100910318 "trafficking protein pa... 77 1.9e-05 2
TAIR|locus:2008326 - symbol:AT1G51160 "AT1G51160" species... 98 3.3e-05 1
UNIPROTKB|Q5ZKP4 - symbol:TRAPPC2 "Trafficking protein pa... 86 0.00057 1
>FB|FBgn0260861 [details] [associations]
symbol:Trs23 species:7227 "Drosophila melanogaster"
[GO:0030008 "TRAPP complex" evidence=ISS] [GO:0016192
"vesicle-mediated transport" evidence=ISS] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0005801 "cis-Golgi
network" evidence=IEA] InterPro:IPR007233 InterPro:IPR011012
Pfam:PF04099 EMBL:AE014134 GO:GO:0016192 GO:GO:0006888
SUPFAM:SSF64356 GO:GO:0030008 PANTHER:PTHR23249 eggNOG:COG5122
GeneTree:ENSGT00510000047061 OMA:VYIVSKS EMBL:BT120293
RefSeq:NP_609247.1 UniGene:Dm.18211 SMR:Q9VLI9 STRING:Q9VLI9
EnsemblMetazoa:FBtr0079730 GeneID:34197 KEGG:dme:Dmel_CG9298
UCSC:CG9298-RA CTD:34197 FlyBase:FBgn0260861 InParanoid:Q9VLI9
OrthoDB:EOG4TQJRZ GenomeRNAi:34197 NextBio:787364 Uniprot:Q9VLI9
Length = 219
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 34/45 (75%), Positives = 40/45 (88%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
+G+DL+L+K+YELY+DY LKNPFYSLEMPIRCELFD LQ LL Q
Sbjct: 164 NGIDLLLRKVYELYSDYVLKNPFYSLEMPIRCELFDNKLQELLAQ 208
>ZFIN|ZDB-GENE-040426-1734 [details] [associations]
symbol:trappc4 "trafficking protein particle
complex 4" species:7955 "Danio rerio" [GO:0005801 "cis-Golgi
network" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099
ZFIN:ZDB-GENE-040426-1734 GO:GO:0006888 SUPFAM:SSF64356
GO:GO:0005801 PANTHER:PTHR23249 eggNOG:COG5122 CTD:51399
HOGENOM:HOG000165618 HOVERGEN:HBG054226 OrthoDB:EOG4JT06F
EMBL:BC059594 IPI:IPI00502097 RefSeq:NP_957058.1 UniGene:Dr.82687
ProteinModelPortal:Q6PBT2 SMR:Q6PBT2 STRING:Q6PBT2 DNASU:393737
GeneID:393737 KEGG:dre:393737 InParanoid:Q6PBT2 NextBio:20814738
ArrayExpress:Q6PBT2 Uniprot:Q6PBT2
Length = 219
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 31/44 (70%), Positives = 41/44 (93%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
SG+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L++ L+
Sbjct: 164 SGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKSALE 207
>UNIPROTKB|F1NU38 [details] [associations]
symbol:TRAPPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005801 "cis-Golgi network" evidence=IEA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 GO:GO:0006888
SUPFAM:SSF64356 GO:GO:0005801 PANTHER:PTHR23249
GeneTree:ENSGT00510000047061 EMBL:AADN02058035 EMBL:AADN02058036
IPI:IPI00571421 Ensembl:ENSGALT00000012488 ArrayExpress:F1NU38
Uniprot:F1NU38
Length = 210
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 155 AGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 198
>UNIPROTKB|F1NXY8 [details] [associations]
symbol:TRAPPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA] [GO:0005795 "Golgi stack" evidence=IEA]
[GO:0008021 "synaptic vesicle" evidence=IEA] [GO:0016358 "dendrite
development" evidence=IEA] [GO:0030008 "TRAPP complex"
evidence=IEA] [GO:0030425 "dendrite" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 GO:GO:0030425
GO:GO:0008021 GO:GO:0005795 GO:GO:0006888 SUPFAM:SSF64356
GO:GO:0030008 PANTHER:PTHR23249 GeneTree:ENSGT00510000047061
OMA:VYIVSKS EMBL:AADN02058035 EMBL:AADN02058036 IPI:IPI00820567
Ensembl:ENSGALT00000040575 ArrayExpress:F1NXY8 Uniprot:F1NXY8
Length = 218
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 163 AGIDALLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 206
>UNIPROTKB|Q2TBL9 [details] [associations]
symbol:TRAPPC4 "Trafficking protein particle complex
subunit 4" species:9913 "Bos taurus" [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0030425 "dendrite" evidence=IEA]
[GO:0030008 "TRAPP complex" evidence=IEA] [GO:0016358 "dendrite
development" evidence=IEA] [GO:0008021 "synaptic vesicle"
evidence=IEA] [GO:0005795 "Golgi stack" evidence=IEA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 GO:GO:0005783
GO:GO:0030425 GO:GO:0008021 GO:GO:0005795 GO:GO:0016358
GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0030008 PANTHER:PTHR23249
eggNOG:COG5122 EMBL:BC109939 IPI:IPI00693822 RefSeq:NP_001033591.1
RefSeq:NP_001178133.1 UniGene:Bt.15766 UniGene:Bt.88065
STRING:Q2TBL9 PRIDE:Q2TBL9 Ensembl:ENSBTAT00000010619 GeneID:504391
GeneID:785345 KEGG:bta:504391 KEGG:bta:785345 CTD:51399
GeneTree:ENSGT00510000047061 HOGENOM:HOG000165618
HOVERGEN:HBG054226 InParanoid:Q2TBL9 OMA:VYIVSKS OrthoDB:EOG4JT06F
NextBio:20866638 Uniprot:Q2TBL9
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>UNIPROTKB|E2RSA9 [details] [associations]
symbol:TRAPPC4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0030425 "dendrite" evidence=IEA]
[GO:0030008 "TRAPP complex" evidence=IEA] [GO:0016358 "dendrite
development" evidence=IEA] [GO:0008021 "synaptic vesicle"
evidence=IEA] [GO:0005795 "Golgi stack" evidence=IEA] [GO:0006888
"ER to Golgi vesicle-mediated transport" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 GO:GO:0030425
GO:GO:0008021 GO:GO:0005795 GO:GO:0016358 GO:GO:0006888
SUPFAM:SSF64356 GO:GO:0030008 PANTHER:PTHR23249 CTD:51399
GeneTree:ENSGT00510000047061 OMA:VYIVSKS EMBL:AAEX03003442
RefSeq:XP_860256.2 Ensembl:ENSCAFT00000019671 GeneID:479411
KEGG:cfa:479411 NextBio:20854598 Uniprot:E2RSA9
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>UNIPROTKB|B4DME1 [details] [associations]
symbol:TRAPPC4 "Trafficking protein particle complex
subunit 4" species:9606 "Homo sapiens" [GO:0005801 "cis-Golgi
network" evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA] InterPro:IPR007233 InterPro:IPR011012
Pfam:PF04099 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801
PANTHER:PTHR23249 HOGENOM:HOG000165618 HOVERGEN:HBG054226
UniGene:Hs.132760 HGNC:HGNC:19943 ChiTaRS:TRAPPC4 EMBL:AP003392
EMBL:AK297422 IPI:IPI00910488 SMR:B4DME1 STRING:B4DME1
Ensembl:ENST00000434101 UCSC:uc010ryp.2 Uniprot:B4DME1
Length = 165
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 110 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 153
>UNIPROTKB|E9PKS9 [details] [associations]
symbol:TRAPPC4 "Trafficking protein particle complex
subunit 4" species:9606 "Homo sapiens" [GO:0005801 "cis-Golgi
network" evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA] InterPro:IPR007233 InterPro:IPR011012
Pfam:PF04099 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801
PANTHER:PTHR23249 HGNC:HGNC:19943 ChiTaRS:TRAPPC4 EMBL:AP003392
IPI:IPI00978646 ProteinModelPortal:E9PKS9 SMR:E9PKS9
Ensembl:ENST00000525303 ArrayExpress:E9PKS9 Bgee:E9PKS9
Uniprot:E9PKS9
Length = 126
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 71 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 114
>UNIPROTKB|E9PQE8 [details] [associations]
symbol:TRAPPC4 "Trafficking protein particle complex
subunit 4" species:9606 "Homo sapiens" [GO:0005801 "cis-Golgi
network" evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA] InterPro:IPR007233 InterPro:IPR011012
Pfam:PF04099 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801
PANTHER:PTHR23249 HGNC:HGNC:19943 ChiTaRS:TRAPPC4 EMBL:AP003392
IPI:IPI00982028 ProteinModelPortal:E9PQE8 SMR:E9PQE8
Ensembl:ENST00000528230 ArrayExpress:E9PQE8 Bgee:E9PQE8
Uniprot:E9PQE8
Length = 176
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 121 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 164
>UNIPROTKB|Q9Y296 [details] [associations]
symbol:TRAPPC4 "Trafficking protein particle complex
subunit 4" species:9606 "Homo sapiens" [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0030008 "TRAPP
complex" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005795 "Golgi stack" evidence=ISS] [GO:0008021
"synaptic vesicle" evidence=ISS] [GO:0016358 "dendrite development"
evidence=ISS] [GO:0030425 "dendrite" evidence=ISS] [GO:0045202
"synapse" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 GO:GO:0005783
EMBL:CH471065 Pathway_Interaction_DB:syndecan_2_pathway
GO:GO:0030425 GO:GO:0008021 GO:GO:0005795 GO:GO:0016358
GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0030008 PANTHER:PTHR23249
PDB:2J3T PDBsum:2J3T eggNOG:COG5122 CTD:51399 HOGENOM:HOG000165618
HOVERGEN:HBG054226 OMA:VYIVSKS OrthoDB:EOG4JT06F EMBL:AF105025
EMBL:AF078862 EMBL:AF161520 EMBL:AF151862 EMBL:AK290520
EMBL:BC010866 IPI:IPI00007691 RefSeq:NP_057230.1 UniGene:Hs.132760
PDB:2JSN PDB:2ZMV PDBsum:2JSN PDBsum:2ZMV ProteinModelPortal:Q9Y296
SMR:Q9Y296 DIP:DIP-37871N IntAct:Q9Y296 MINT:MINT-1424006
STRING:Q9Y296 PhosphoSite:Q9Y296 DMDM:20178121 PaxDb:Q9Y296
PRIDE:Q9Y296 DNASU:51399 Ensembl:ENST00000533632 GeneID:51399
KEGG:hsa:51399 UCSC:uc010ryn.2 GeneCards:GC11P118889
HGNC:HGNC:19943 HPA:HPA039752 HPA:HPA041371 MIM:610971
neXtProt:NX_Q9Y296 PharmGKB:PA134906910 InParanoid:Q9Y296
PhylomeDB:Q9Y296 ChiTaRS:TRAPPC4 EvolutionaryTrace:Q9Y296
GenomeRNAi:51399 NextBio:54937 ArrayExpress:Q9Y296 Bgee:Q9Y296
CleanEx:HS_TRAPPC4 Genevestigator:Q9Y296 GermOnline:ENSG00000196655
Uniprot:Q9Y296
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>UNIPROTKB|F2Z5G7 [details] [associations]
symbol:TRAPPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030425 "dendrite" evidence=IEA] [GO:0030008 "TRAPP
complex" evidence=IEA] [GO:0016358 "dendrite development"
evidence=IEA] [GO:0008021 "synaptic vesicle" evidence=IEA]
[GO:0005795 "Golgi stack" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] InterPro:IPR007233
InterPro:IPR011012 Pfam:PF04099 GO:GO:0030425 GO:GO:0008021
GO:GO:0005795 GO:GO:0016358 GO:GO:0006888 SUPFAM:SSF64356
GO:GO:0030008 PANTHER:PTHR23249 GeneTree:ENSGT00510000047061
OMA:VYIVSKS EMBL:CU695209 RefSeq:XP_003129966.1 UniGene:Ssc.54303
PRIDE:F2Z5G7 Ensembl:ENSSSCT00000016470 GeneID:100516212
KEGG:ssc:100516212 Uniprot:F2Z5G7
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>MGI|MGI:1926211 [details] [associations]
symbol:Trappc4 "trafficking protein particle complex 4"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005795 "Golgi
stack" evidence=IDA] [GO:0005801 "cis-Golgi network" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated transport"
evidence=IEA] [GO:0008021 "synaptic vesicle" evidence=IDA]
[GO:0016020 "membrane" evidence=IEA] [GO:0016192 "vesicle-mediated
transport" evidence=TAS] [GO:0016358 "dendrite development"
evidence=IDA] [GO:0030008 "TRAPP complex" evidence=IDA] [GO:0030054
"cell junction" evidence=IEA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0045202 "synapse" evidence=IDA] [GO:0045211 "postsynaptic
membrane" evidence=IEA] [GO:0045212 "neurotransmitter receptor
biosynthetic process" evidence=TAS] InterPro:IPR007233
InterPro:IPR011012 Pfam:PF04099 MGI:MGI:1926211 GO:GO:0005783
GO:GO:0005886 GO:GO:0016192 GO:GO:0030054 GO:GO:0045211
GO:GO:0030425 GO:GO:0008021 GO:GO:0005795 GO:GO:0016358
GO:GO:0045212 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0030008
PANTHER:PTHR23249 eggNOG:COG5122 CTD:51399
GeneTree:ENSGT00510000047061 HOGENOM:HOG000165618
HOVERGEN:HBG054226 OMA:VYIVSKS OrthoDB:EOG4JT06F ChiTaRS:TRAPPC4
EMBL:AF233340 EMBL:BC038898 EMBL:AK005276 IPI:IPI00112785
RefSeq:NP_068561.1 UniGene:Mm.29814 ProteinModelPortal:Q9ES56
SMR:Q9ES56 IntAct:Q9ES56 STRING:Q9ES56 PhosphoSite:Q9ES56
PaxDb:Q9ES56 PRIDE:Q9ES56 DNASU:60409 Ensembl:ENSMUST00000034623
GeneID:60409 KEGG:mmu:60409 InParanoid:Q9ES56 NextBio:314853
Bgee:Q9ES56 CleanEx:MM_TRAPPC4 Genevestigator:Q9ES56
GermOnline:ENSMUSG00000032112 Uniprot:Q9ES56
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>RGD|1302991 [details] [associations]
symbol:Trappc4 "trafficking protein particle complex 4"
species:10116 "Rattus norvegicus" [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005795 "Golgi stack"
evidence=IEA;ISO] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA] [GO:0008021 "synaptic vesicle"
evidence=IEA;ISO] [GO:0016358 "dendrite development"
evidence=IEA;ISO] [GO:0030008 "TRAPP complex" evidence=IEA;ISO]
[GO:0030425 "dendrite" evidence=IEA;ISO] [GO:0045202 "synapse"
evidence=ISO] InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099
RGD:1302991 GO:GO:0005783 GO:GO:0030425 GO:GO:0008021 GO:GO:0005795
GO:GO:0016358 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0030008
PANTHER:PTHR23249 eggNOG:COG5122 CTD:51399
GeneTree:ENSGT00510000047061 HOGENOM:HOG000165618
HOVERGEN:HBG054226 OrthoDB:EOG4JT06F EMBL:AY373378 EMBL:BC098628
IPI:IPI00650101 RefSeq:NP_001003708.1 UniGene:Rn.9580
ProteinModelPortal:Q69BT7 SMR:Q69BT7 STRING:Q69BT7
Ensembl:ENSRNOT00000016145 GeneID:367073 KEGG:rno:367073
UCSC:RGD:1302991 InParanoid:Q69BT7 NextBio:690592
Genevestigator:Q69BT7 Uniprot:Q69BT7
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 30/44 (68%), Positives = 40/44 (90%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIRCELFD +L+ L+
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>POMBASE|SPBC3B9.12 [details] [associations]
symbol:trs23 "TRAPP complex subunit Trs23 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005634 "nucleus"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006886 "intracellular
protein transport" evidence=NAS] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=ISO] [GO:0030008 "TRAPP
complex" evidence=ISO] [GO:0032313 "regulation of Rab GTPase
activity" evidence=IC] [GO:0017112 "Rab guanyl-nucleotide exchange
factor activity" evidence=ISO] InterPro:IPR007233
InterPro:IPR011012 Pfam:PF04099 PomBase:SPBC3B9.12 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0006886 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006888 GO:GO:0032313
SUPFAM:SSF64356 GO:GO:0030008 PANTHER:PTHR23249 eggNOG:COG5122
OMA:HLLWIIN PIR:T40351 RefSeq:NP_596670.1 ProteinModelPortal:O43041
STRING:O43041 EnsemblFungi:SPBC3B9.12.1 GeneID:2540976
KEGG:spo:SPBC3B9.12 HOGENOM:HOG000165619 OrthoDB:EOG4P2TBS
NextBio:20802091 Uniprot:O43041
Length = 132
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 26/42 (61%), Positives = 33/42 (78%)
Query: 60 LILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
L L+K YELY+DY LKNPFY+LEMPI+C+LFD L+ + H
Sbjct: 91 LQLQKFYELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYIDSH 132
>TAIR|locus:2180117 [details] [associations]
symbol:AT5G02280 "AT5G02280" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0005801 "cis-Golgi network"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IEA] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006888 SUPFAM:SSF64356
GO:GO:0005801 PANTHER:PTHR23249 EMBL:AL162874 UniGene:At.21647
UniGene:At.71133 eggNOG:COG5122 HOGENOM:HOG000165619 EMBL:AY088869
EMBL:BT003933 EMBL:BT005052 IPI:IPI00541765 PIR:T48249
RefSeq:NP_195848.1 ProteinModelPortal:Q9LZ97 SMR:Q9LZ97
PaxDb:Q9LZ97 PRIDE:Q9LZ97 DNASU:831680 EnsemblPlants:AT5G02280.1
GeneID:831680 KEGG:ath:AT5G02280 TAIR:At5g02280 InParanoid:Q9LZ97
OMA:LHGVHAI PhylomeDB:Q9LZ97 ProtClustDB:CLSN2687323
ArrayExpress:Q9LZ97 Genevestigator:Q9LZ97 Uniprot:Q9LZ97
Length = 141
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 29/52 (55%), Positives = 37/52 (71%)
Query: 48 EPGRNLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
EPG + ++ +L+ IYELY DY LKNPFY +EMPIRCELFD +L +Q
Sbjct: 85 EPG----TPHMESLLRYIYELYTDYVLKNPFYEIEMPIRCELFDINLTQAVQ 132
>WB|WBGene00018088 [details] [associations]
symbol:F36D4.2 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0005801 "cis-Golgi
network" evidence=IEA] InterPro:IPR007233 InterPro:IPR011012
Pfam:PF04099 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801
PANTHER:PTHR23249 eggNOG:COG5122 GeneTree:ENSGT00510000047061
HOGENOM:HOG000165618 OMA:VYIVSKS EMBL:FO081027 PIR:T29312
RefSeq:NP_505435.1 UniGene:Cel.3721 ProteinModelPortal:Q20100
SMR:Q20100 DIP:DIP-27425N IntAct:Q20100 MINT:MINT-1054082
STRING:Q20100 PaxDb:Q20100 EnsemblMetazoa:F36D4.2 GeneID:185357
KEGG:cel:CELE_F36D4.2 UCSC:F36D4.2 CTD:185357 WormBase:F36D4.2
InParanoid:Q20100 NextBio:927984 Uniprot:Q20100
Length = 224
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 59 DLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
D +L K+YELY D+ALKNPFYS++MPIR + FD ++ LL++
Sbjct: 173 DSLLSKMYELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLER 214
>UNIPROTKB|Q20100 [details] [associations]
symbol:F36D4.2 "Protein F36D4.2" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099
GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801 PANTHER:PTHR23249
eggNOG:COG5122 GeneTree:ENSGT00510000047061 HOGENOM:HOG000165618
OMA:VYIVSKS EMBL:FO081027 PIR:T29312 RefSeq:NP_505435.1
UniGene:Cel.3721 ProteinModelPortal:Q20100 SMR:Q20100
DIP:DIP-27425N IntAct:Q20100 MINT:MINT-1054082 STRING:Q20100
PaxDb:Q20100 EnsemblMetazoa:F36D4.2 GeneID:185357
KEGG:cel:CELE_F36D4.2 UCSC:F36D4.2 CTD:185357 WormBase:F36D4.2
InParanoid:Q20100 NextBio:927984 Uniprot:Q20100
Length = 224
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 59 DLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
D +L K+YELY D+ALKNPFYS++MPIR + FD ++ LL++
Sbjct: 173 DSLLSKMYELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLER 214
>DICTYBASE|DDB_G0280827 [details] [associations]
symbol:trappc4 "trafficking protein particle complex
subunit 4" species:44689 "Dictyostelium discoideum" [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0005801 "cis-Golgi network"
evidence=IEA] [GO:0016192 "vesicle-mediated transport"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR007233
InterPro:IPR011012 Pfam:PF04099 dictyBase:DDB_G0280827
GO:GO:0005783 GO:GO:0005794 GenomeReviews:CM000152_GR GO:GO:0006888
SUPFAM:SSF64356 GO:GO:0005801 PANTHER:PTHR23249 EMBL:AAFI02000025
eggNOG:COG5122 RefSeq:XP_641000.1 ProteinModelPortal:Q54UU1
PRIDE:Q54UU1 EnsemblProtists:DDB0252669 GeneID:8621803
KEGG:ddi:DDB_G0280827 OMA:HLLWIIN Uniprot:Q54UU1
Length = 135
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 25/41 (60%), Positives = 30/41 (73%)
Query: 58 LDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLL 98
L+ +L +YELY DY LKNPFY +EM IRC+LFD L LL
Sbjct: 91 LEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKLNRLL 131
>UNIPROTKB|E9PN70 [details] [associations]
symbol:TRAPPC4 "Trafficking protein particle complex
subunit 4" species:9606 "Homo sapiens" [GO:0005801 "cis-Golgi
network" evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA] InterPro:IPR007233 InterPro:IPR011012
Pfam:PF04099 GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801
PANTHER:PTHR23249 HGNC:HGNC:19943 ChiTaRS:TRAPPC4 EMBL:AP003392
IPI:IPI00980491 ProteinModelPortal:E9PN70 SMR:E9PN70
Ensembl:ENST00000533058 UCSC:uc010ryq.2 ArrayExpress:E9PN70
Bgee:E9PN70 Uniprot:E9PN70
Length = 257
Score = 134 (52.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 23/31 (74%), Positives = 30/31 (96%)
Query: 56 SGLDLILKKIYELYADYALKNPFYSLEMPIR 86
+G+D +L+KIYE+Y+D+ALKNPFYSLEMPIR
Sbjct: 164 AGIDSLLRKIYEIYSDFALKNPFYSLEMPIR 194
>SGD|S000002654 [details] [associations]
symbol:TRS23 "Subunit of the transport protein particle
(TRAPP) complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000407 "pre-autophagosomal structure" evidence=IEA]
[GO:0016192 "vesicle-mediated transport" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0005801 "cis-Golgi
network" evidence=IEA] [GO:0006888 "ER to Golgi vesicle-mediated
transport" evidence=IEA;IGI;IMP] [GO:0030008 "TRAPP complex"
evidence=IDA] [GO:0017112 "Rab guanyl-nucleotide exchange factor
activity" evidence=IDA;IMP] [GO:0006914 "autophagy" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 SGD:S000002654
GO:GO:0005783 GO:GO:0006914 EMBL:BK006938 GO:GO:0006888 EMBL:Z49701
RefSeq:NP_010532.3 GeneID:851833 KEGG:sce:YDR246W SUPFAM:SSF64356
GO:GO:0051276 GO:GO:0000407 GO:GO:0030008 PDB:3CUE PDBsum:3CUE
PANTHER:PTHR23249 eggNOG:COG5122 GeneTree:ENSGT00510000047061
HOGENOM:HOG000165619 OrthoDB:EOG4P2TBS PIR:S54542
RefSeq:NP_010535.3 ProteinModelPortal:Q03784 SMR:Q03784
DIP:DIP-5813N IntAct:Q03784 MINT:MINT-640620 STRING:Q03784
PaxDb:Q03784 EnsemblFungi:YDR246W GeneID:851836 KEGG:sce:YDR249C
CYGD:YDR246w OMA:YLILAST EvolutionaryTrace:Q03784 NextBio:969724
Genevestigator:Q03784 GermOnline:YDR246W Uniprot:Q03784
Length = 219
Score = 124 (48.7 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 52 NLASSGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
NLA D L+K+Y LY+DY +K+P YS+EMPIR LFD ++ +++
Sbjct: 169 NLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
>CGD|CAL0000449 [details] [associations]
symbol:orf19.3673 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030008 "TRAPP complex" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0017112 "Rab
guanyl-nucleotide exchange factor activity" evidence=IEA]
InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099 CGD:CAL0000449
GO:GO:0006888 SUPFAM:SSF64356 GO:GO:0005801 EMBL:AACQ01000118
EMBL:AACQ01000119 PANTHER:PTHR23249 eggNOG:COG5122
HOGENOM:HOG000165619 RefSeq:XP_713733.1 RefSeq:XP_713767.1
ProteinModelPortal:Q59VY5 STRING:Q59VY5 GeneID:3644584
GeneID:3644610 KEGG:cal:CaO19.11157 KEGG:cal:CaO19.3673
Uniprot:Q59VY5
Length = 168
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 52 NLASSGL--DLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQ 100
N+A+S D + + +Y LY+DY +K+PFYSL+MPI+ LFD ++ L Q
Sbjct: 117 NVANSETVTDELFRHLYILYSDYVMKDPFYSLDMPIKSSLFDGRVKQLFAQ 167
>RGD|6499350 [details] [associations]
symbol:LOC100910318 "trafficking protein particle complex
subunit 2-like" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
InterPro:IPR006722 InterPro:IPR011012 Pfam:PF04628 GO:GO:0005783
GO:GO:0005634 GO:GO:0005794 GO:GO:0048471 GO:GO:0006351
GO:GO:0006888 SUPFAM:SSF64356 EMBL:CH473948 OMA:VGHNDNP
PANTHER:PTHR12403 GeneTree:ENSGT00510000047168 OrthoDB:EOG49GKHT
EMBL:AC105470 IPI:IPI00817107 RefSeq:NP_001258040.1
RefSeq:NP_001258041.1 Ensembl:ENSRNOT00000006006 GeneID:100910318
KEGG:rno:100910318 Uniprot:D3ZVF4
Length = 140
Score = 77 (32.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY PIR F+ +Q L ++H
Sbjct: 94 GIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSTAFERKVQFLGKKH 137
Score = 34 (17.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 15 EYHPVDNTHLIQQQEQHRHID 35
E+ P T + +++HRH++
Sbjct: 21 EFLPAGKT---ESKDEHRHLN 38
>TAIR|locus:2008326 [details] [associations]
symbol:AT1G51160 "AT1G51160" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0005801 "cis-Golgi network"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0006888 "ER
to Golgi vesicle-mediated transport" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0009832 "plant-type cell wall
biogenesis" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR007233 InterPro:IPR011012 Pfam:PF04099
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0006888
SUPFAM:SSF64356 GO:GO:0005801 HOGENOM:HOG000172118
PANTHER:PTHR23249 EMBL:AC079828 EMBL:AC006085 OMA:FLYYKTN
eggNOG:COG5122 EMBL:BT004796 EMBL:AK227820 IPI:IPI00527134
PIR:B96549 RefSeq:NP_001031168.1 RefSeq:NP_175528.1
UniGene:At.11222 ProteinModelPortal:Q9SYB8 SMR:Q9SYB8 STRING:Q9SYB8
PaxDb:Q9SYB8 PRIDE:Q9SYB8 DNASU:841539 EnsemblPlants:AT1G51160.1
EnsemblPlants:AT1G51160.2 GeneID:841539 KEGG:ath:AT1G51160
TAIR:At1g51160 InParanoid:Q9SYB8 PhylomeDB:Q9SYB8
ProtClustDB:CLSN2682944 Genevestigator:Q9SYB8 Uniprot:Q9SYB8
Length = 169
Score = 98 (39.6 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 62 LKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQ 99
LK IY LY +Y +KNP YS PI+ ELF+T L ++
Sbjct: 129 LKYIYSLYVEYVVKNPIYSPGSPIKSELFNTALDQYVR 166
>UNIPROTKB|Q5ZKP4 [details] [associations]
symbol:TRAPPC2 "Trafficking protein particle complex
subunit 2" species:9031 "Gallus gallus" [GO:0006888 "ER to Golgi
vesicle-mediated transport" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR006722 InterPro:IPR011012 Pfam:PF04628
GO:GO:0005783 GO:GO:0005794 GO:GO:0048471 GO:GO:0006888
SUPFAM:SSF64356 CTD:6399 OMA:VGHNDNP PANTHER:PTHR12403
eggNOG:COG5603 GeneTree:ENSGT00510000047168 HOGENOM:HOG000214139
HOVERGEN:HBG006717 OrthoDB:EOG49GKHT EMBL:AJ720040
EMBL:AADN02011353 IPI:IPI00570779 RefSeq:NP_001006263.1
UniGene:Gga.7014 STRING:Q5ZKP4 Ensembl:ENSGALT00000026761
GeneID:418634 KEGG:gga:418634 InParanoid:Q5ZKP4 NextBio:20821790
Uniprot:Q5ZKP4
Length = 140
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 57 GLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
G+ +Y+LY +A+ NPFY L PIR F+ +Q L ++H
Sbjct: 94 GIKNFFNDVYDLYIKFAM-NPFYELNSPIRSSAFERKVQFLGKKH 137
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.432 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 101 101 0.00091 102 3 11 22 0.41 30
29 0.47 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 580 (62 KB)
Total size of DFA: 141 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.66u 0.13s 12.79t Elapsed: 00:00:00
Total cpu time: 12.66u 0.13s 12.79t Elapsed: 00:00:00
Start: Thu Aug 15 15:57:48 2013 End: Thu Aug 15 15:57:48 2013