RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16695
         (101 letters)



>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 140

 Score = 49.9 bits (119), Expect = 9e-10
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 56  SGLDLILKKIYELYADYALKNPFYSLEMPIRCELFDTHLQNLLQQH 101
            G+      +Y+LY  +A+ NPFY    PIR   FD  +Q L ++H
Sbjct: 93  DGIKNFFTDVYDLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKH 137


>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
           (Loligo pealei) [TaxId: 6621]}
          Length = 590

 Score = 25.0 bits (54), Expect = 2.1
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 51  RNLASSGLDLILKKIYELYADYALKNP-FYSLEMP 84
           + L  S     +K + E+   +       +SL+ P
Sbjct: 112 KELCKSTTARFIKTLKEINIAFLPYESQIFSLDSP 146


>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
           {Bacillus caldotenax [TaxId: 1395]}
          Length = 413

 Score = 23.9 bits (51), Expect = 4.2
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 76  NPFYSLEMPIRCELFDTHLQNL 97
            P    E  IR E F   ++ +
Sbjct: 202 FPASRDEHCIRVEFFGDEIERI 223


>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 653

 Score = 23.9 bits (51), Expect = 4.8
 Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 51  RNLASSGLDLILKKIYELYADYALKNP-FYSLEMP 84
           + ++ +G    +K++Y+ Y D+ +  P  +SLE+ 
Sbjct: 133 QQVSITGKSDKIKQVYDQYLDFIVTEPELFSLEIS 167


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,985
Number of extensions: 15887
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 7
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)