Query psy16696
Match_columns 296
No_of_seqs 282 out of 1493
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 19:39:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 2.6E-41 5.6E-46 297.9 21.9 203 73-293 2-206 (262)
2 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.5E-40 3.2E-45 290.4 21.3 205 73-295 7-217 (242)
3 TIGR01933 hflK HflK protein. H 100.0 1.6E-39 3.5E-44 286.8 22.5 204 73-294 7-213 (261)
4 PRK11029 FtsH protease regulat 100.0 2.7E-39 5.8E-44 290.8 23.7 204 74-295 27-282 (334)
5 PRK10930 FtsH protease regulat 100.0 5.2E-39 1.1E-43 296.3 25.1 203 73-293 103-308 (419)
6 cd03404 Band_7_HflK Band_7_Hfl 100.0 3.8E-38 8.1E-43 278.9 23.9 204 74-294 22-240 (266)
7 TIGR01932 hflC HflC protein. H 100.0 5.3E-38 1.2E-42 283.2 23.8 204 74-295 27-272 (317)
8 cd03403 Band_7_stomatin_like B 100.0 8.3E-38 1.8E-42 268.4 21.2 203 73-292 4-207 (215)
9 KOG2620|consensus 100.0 3.6E-38 7.7E-43 263.9 11.7 211 74-290 16-228 (301)
10 cd03402 Band_7_2 A subgroup of 100.0 5.2E-34 1.1E-38 243.9 16.9 165 73-239 8-180 (219)
11 cd03406 Band_7_3 A subgroup of 100.0 6.7E-33 1.5E-37 243.7 23.8 188 73-262 11-215 (280)
12 COG0330 HflC Membrane protease 100.0 6.9E-33 1.5E-37 248.4 24.3 185 74-259 28-219 (291)
13 cd03401 Band_7_prohibitin Band 100.0 1.5E-33 3.3E-38 238.5 17.7 183 73-293 8-196 (196)
14 KOG2621|consensus 100.0 8.3E-31 1.8E-35 222.3 16.1 208 38-249 27-238 (288)
15 PF01145 Band_7: SPFH domain / 100.0 2.2E-29 4.8E-34 209.5 16.1 167 73-240 6-179 (179)
16 smart00244 PHB prohibitin homo 100.0 4.4E-29 9.6E-34 204.0 15.2 149 73-222 9-159 (160)
17 KOG3090|consensus 99.9 9.7E-23 2.1E-27 167.5 13.3 197 60-260 33-238 (290)
18 KOG3083|consensus 99.9 4.7E-22 1E-26 163.3 6.1 191 61-255 23-222 (271)
19 KOG2962|consensus 99.8 8.3E-20 1.8E-24 150.9 18.0 214 73-288 29-260 (322)
20 COG2268 Uncharacterized protei 99.8 1.6E-19 3.5E-24 168.6 19.4 177 82-259 58-251 (548)
21 cd03408 Band_7_5 A subgroup of 99.8 4.7E-20 1E-24 157.2 13.1 149 73-222 22-206 (207)
22 KOG2668|consensus 99.8 2.8E-19 6E-24 155.9 14.6 178 75-255 10-200 (428)
23 cd03399 Band_7_flotillin Band_ 99.8 1.8E-19 3.9E-24 142.1 10.1 115 107-221 3-126 (128)
24 cd03400 Band_7_1 A subgroup of 99.8 5.2E-18 1.1E-22 133.0 12.0 115 107-222 4-123 (124)
25 cd02106 Band_7 The band 7 doma 99.7 3.5E-16 7.5E-21 121.1 14.2 114 109-222 5-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.4 1.6E-11 3.6E-16 104.3 15.2 149 73-222 22-206 (211)
27 KOG2620|consensus 99.1 6.8E-11 1.5E-15 100.2 6.1 77 3-79 213-289 (301)
28 COG4260 Membrane protease subu 98.9 1.8E-08 3.9E-13 86.6 11.2 149 74-223 48-234 (345)
29 PTZ00491 major vault protein; 98.9 3.2E-07 7E-12 90.3 19.9 213 82-295 481-741 (850)
30 PF12127 YdfA_immunity: SigmaW 97.7 0.0014 3.1E-08 56.7 12.9 107 108-219 122-229 (316)
31 PRK13665 hypothetical protein; 97.3 0.0037 7.9E-08 54.0 10.6 107 108-219 127-234 (316)
32 cd03407 Band_7_4 A subgroup of 97.2 0.0013 2.8E-08 58.1 7.5 73 2-74 187-260 (262)
33 PF11978 MVP_shoulder: Shoulde 96.5 0.028 6.1E-07 42.6 8.5 93 119-211 10-116 (118)
34 COG1580 FliL Flagellar basal b 94.0 1.8 3.8E-05 35.2 11.9 81 125-211 76-158 (159)
35 cd03405 Band_7_HflC Band_7_Hfl 93.7 0.26 5.7E-06 42.7 7.3 60 197-257 141-207 (242)
36 cd03404 Band_7_HflK Band_7_Hfl 92.9 0.24 5.3E-06 43.6 5.9 21 273-293 208-228 (266)
37 COG2811 NtpF Archaeal/vacuolar 92.9 3 6.5E-05 31.4 10.7 47 216-262 6-52 (108)
38 COG4864 Uncharacterized protei 92.6 2.1 4.5E-05 36.4 10.4 93 121-218 139-232 (328)
39 PF03748 FliL: Flagellar basal 91.5 4.2 9.1E-05 29.7 11.0 51 157-209 44-96 (99)
40 TIGR01933 hflK HflK protein. H 90.4 1.3 2.8E-05 38.9 7.6 66 195-261 136-208 (261)
41 TIGR01932 hflC HflC protein. H 89.7 1.5 3.2E-05 39.8 7.6 79 180-259 178-264 (317)
42 PRK07718 fliL flagellar basal 89.3 6 0.00013 31.4 10.0 51 157-209 87-139 (142)
43 PRK11029 FtsH protease regulat 88.9 1.8 3.8E-05 39.6 7.5 68 204-295 203-271 (334)
44 cd03406 Band_7_3 A subgroup of 88.2 7.2 0.00016 34.8 10.7 98 184-282 124-225 (280)
45 PRK06654 fliL flagellar basal 86.7 7.9 0.00017 32.0 9.3 88 115-210 88-177 (181)
46 TIGR01147 V_ATP_synt_G vacuola 85.1 12 0.00026 28.5 8.9 51 218-268 7-57 (113)
47 KOG2668|consensus 84.1 8.7 0.00019 35.0 8.9 15 89-103 55-69 (428)
48 PF03179 V-ATPase_G: Vacuolar 82.7 6.5 0.00014 29.3 6.7 39 218-256 5-43 (105)
49 PRK10930 FtsH protease regulat 79.0 5.3 0.00012 37.7 6.2 125 145-295 164-299 (419)
50 KOG3083|consensus 77.2 2.9 6.2E-05 35.6 3.4 23 273-295 201-223 (271)
51 PRK05697 flagellar basal body- 76.9 9 0.00019 30.3 6.0 53 157-209 78-134 (137)
52 PRK04057 30S ribosomal protein 75.1 36 0.00078 28.8 9.5 82 119-207 101-184 (203)
53 PRK08404 V-type ATP synthase s 73.3 36 0.00077 25.4 10.7 39 217-255 3-41 (103)
54 COG0330 HflC Membrane protease 73.0 7.4 0.00016 34.6 5.3 89 187-289 143-233 (291)
55 PTZ00491 major vault protein; 72.7 25 0.00055 36.0 9.2 48 242-289 716-764 (850)
56 PRK07021 fliL flagellar basal 72.6 34 0.00073 27.7 8.6 53 157-209 103-159 (162)
57 KOG3090|consensus 71.6 5.9 0.00013 33.8 3.9 41 184-225 155-196 (290)
58 cd03401 Band_7_prohibitin Band 71.3 12 0.00025 31.1 5.8 70 182-253 125-195 (196)
59 PRK05696 fliL flagellar basal 70.7 42 0.0009 27.4 8.8 54 156-209 110-167 (170)
60 PRK08455 fliL flagellar basal 70.6 15 0.00033 30.4 6.2 53 156-210 126-180 (182)
61 PRK12785 fliL flagellar basal 70.3 16 0.00034 29.9 6.2 53 156-210 110-164 (166)
62 TIGR02926 AhaH ATP synthase ar 70.2 37 0.00079 24.2 9.7 32 224-255 6-37 (85)
63 PRK01558 V-type ATP synthase s 65.4 30 0.00066 29.0 7.1 31 225-255 20-50 (198)
64 cd03403 Band_7_stomatin_like B 65.3 16 0.00034 30.8 5.4 62 186-255 113-175 (215)
65 PRK01558 V-type ATP synthase s 63.5 89 0.0019 26.2 11.3 25 234-258 18-42 (198)
66 KOG2962|consensus 58.4 90 0.0019 26.9 8.5 101 181-281 139-242 (322)
67 COG3064 TolA Membrane protein 57.6 91 0.002 28.2 8.7 18 276-293 186-203 (387)
68 COG2268 Uncharacterized protei 56.4 67 0.0015 31.4 8.4 45 52-98 37-81 (548)
69 PRK01005 V-type ATP synthase s 55.3 1.3E+02 0.0028 25.5 11.0 31 225-255 25-55 (207)
70 PRK03963 V-type ATP synthase s 53.5 1.2E+02 0.0026 25.1 8.9 28 225-252 15-42 (198)
71 PRK06231 F0F1 ATP synthase sub 52.9 1.4E+02 0.0031 25.2 10.9 9 215-223 73-81 (205)
72 PRK08475 F0F1 ATP synthase sub 51.9 1.3E+02 0.0028 24.4 11.4 9 171-179 46-54 (167)
73 PRK02292 V-type ATP synthase s 51.8 1.3E+02 0.0028 24.7 8.7 18 236-253 25-42 (188)
74 PF01015 Ribosomal_S3Ae: Ribos 51.2 75 0.0016 26.7 7.0 81 119-209 107-187 (194)
75 PF03179 V-ATPase_G: Vacuolar 50.2 49 0.0011 24.5 5.3 23 233-255 9-31 (105)
76 PF07024 ImpE: ImpE protein; 49.8 20 0.00044 27.7 3.2 59 79-137 13-73 (123)
77 PTZ00399 cysteinyl-tRNA-synthe 47.7 2E+02 0.0043 29.0 10.6 42 187-228 520-566 (651)
78 PRK01194 V-type ATP synthase s 47.7 1.4E+02 0.0031 24.7 8.2 31 225-255 14-44 (185)
79 PRK08404 V-type ATP synthase s 46.7 1.2E+02 0.0026 22.6 8.3 16 240-255 41-56 (103)
80 TIGR01147 V_ATP_synt_G vacuola 46.5 51 0.0011 25.1 4.8 33 229-261 7-39 (113)
81 PRK07353 F0F1 ATP synthase sub 44.5 1.5E+02 0.0032 23.0 10.6 7 215-221 30-36 (140)
82 PRK14475 F0F1 ATP synthase sub 44.5 1.7E+02 0.0037 23.7 10.8 15 236-250 74-88 (167)
83 COG2811 NtpF Archaeal/vacuolar 43.4 1.4E+02 0.0031 22.5 10.5 61 222-282 23-83 (108)
84 TIGR03321 alt_F1F0_F0_B altern 42.8 2.2E+02 0.0049 24.6 11.4 17 171-187 29-46 (246)
85 PF01991 vATP-synt_E: ATP synt 42.7 1.5E+02 0.0032 24.3 7.7 28 225-252 6-33 (198)
86 PRK13428 F0F1 ATP synthase sub 42.2 3.2E+02 0.0068 26.1 11.4 9 171-179 25-33 (445)
87 KOG2304|consensus 42.2 41 0.00089 29.2 4.1 12 87-98 148-159 (298)
88 PRK06231 F0F1 ATP synthase sub 42.1 2.1E+02 0.0046 24.1 11.4 9 171-179 72-80 (205)
89 PRK13665 hypothetical protein; 40.1 98 0.0021 27.4 6.1 50 190-239 199-251 (316)
90 PRK13454 F0F1 ATP synthase sub 40.0 2.1E+02 0.0046 23.5 10.8 24 230-253 89-112 (181)
91 PRK13455 F0F1 ATP synthase sub 39.9 2.1E+02 0.0046 23.5 11.2 13 236-248 91-103 (184)
92 PRK01194 V-type ATP synthase s 39.7 2.2E+02 0.0047 23.6 9.3 24 236-259 14-37 (185)
93 CHL00118 atpG ATP synthase CF0 39.5 2E+02 0.0042 23.0 11.3 8 172-179 47-54 (156)
94 KOG1772|consensus 38.9 1.7E+02 0.0036 22.0 9.1 40 218-257 7-46 (108)
95 PRK09098 type III secretion sy 38.1 1.1E+02 0.0024 26.5 6.3 33 228-260 40-72 (233)
96 PRK06568 F0F1 ATP synthase sub 36.2 2.3E+02 0.005 22.8 11.0 17 236-252 68-84 (154)
97 COG4396 Mu-like prophage host- 36.1 98 0.0021 24.4 5.0 61 130-202 93-154 (170)
98 PLN03086 PRLI-interacting fact 36.0 1.5E+02 0.0032 29.3 7.4 23 220-242 9-31 (567)
99 PRK12613 galactose-6-phosphate 34.9 30 0.00064 27.5 2.0 37 183-220 11-47 (141)
100 PRK14474 F0F1 ATP synthase sub 33.5 3.3E+02 0.0071 23.8 11.4 9 171-179 29-37 (250)
101 PF12127 YdfA_immunity: SigmaW 33.5 1.1E+02 0.0025 27.1 5.5 51 190-240 194-247 (316)
102 TIGR03825 FliH_bacil flagellar 33.0 2E+02 0.0043 25.1 7.2 28 228-255 41-68 (255)
103 PRK01005 V-type ATP synthase s 32.1 3.2E+02 0.0068 23.2 10.0 30 230-259 19-48 (207)
104 PF06188 HrpE: HrpE/YscL/FliH 32.1 3E+02 0.0065 22.9 10.3 32 225-256 28-59 (191)
105 PRK14472 F0F1 ATP synthase sub 31.7 2.8E+02 0.0061 22.5 11.4 21 235-255 96-116 (175)
106 PRK09174 F0F1 ATP synthase sub 31.3 3.2E+02 0.007 23.0 11.4 17 171-187 77-94 (204)
107 PRK14475 F0F1 ATP synthase sub 31.0 2.8E+02 0.0062 22.3 11.3 17 171-187 34-51 (167)
108 PRK13453 F0F1 ATP synthase sub 30.4 3E+02 0.0065 22.4 11.3 10 171-180 42-51 (173)
109 PRK14471 F0F1 ATP synthase sub 28.4 3.1E+02 0.0067 21.9 11.4 16 171-186 32-48 (164)
110 PRK13460 F0F1 ATP synthase sub 28.4 3.2E+02 0.007 22.1 11.4 9 171-179 40-48 (173)
111 PRK09174 F0F1 ATP synthase sub 28.0 3.7E+02 0.008 22.7 10.9 20 232-251 113-132 (204)
112 PRK08476 F0F1 ATP synthase sub 27.8 3E+02 0.0065 21.6 11.3 16 171-186 31-47 (141)
113 PRK06568 F0F1 ATP synthase sub 27.4 3.3E+02 0.0071 21.9 11.4 7 172-178 29-35 (154)
114 COG1390 NtpE Archaeal/vacuolar 27.2 3.7E+02 0.0081 22.5 9.1 23 233-255 23-45 (194)
115 PRK07352 F0F1 ATP synthase sub 26.5 3.5E+02 0.0076 21.9 11.4 12 169-180 41-52 (174)
116 PRK09098 type III secretion sy 25.9 2E+02 0.0043 24.8 5.9 28 226-253 49-76 (233)
117 COG1890 RPS1A Ribosomal protei 25.8 4.2E+02 0.0091 22.6 10.3 84 118-208 108-193 (214)
118 PRK14473 F0F1 ATP synthase sub 25.0 3.6E+02 0.0078 21.5 11.3 10 171-180 32-41 (164)
119 COG4455 ImpE Protein of avirul 24.9 74 0.0016 27.5 2.8 60 79-138 155-216 (273)
120 KOG1029|consensus 24.9 8E+02 0.017 25.5 10.2 34 29-64 61-94 (1118)
121 TIGR01120 rpiB ribose 5-phosph 24.6 60 0.0013 25.8 2.2 24 183-206 10-33 (143)
122 KOG2621|consensus 24.6 1.2E+02 0.0026 27.0 4.1 62 3-68 214-277 (288)
123 CHL00019 atpF ATP synthase CF0 24.5 4E+02 0.0086 21.8 11.4 19 170-188 47-66 (184)
124 PF06635 NolV: Nodulation prot 24.1 1.8E+02 0.0039 24.7 5.0 29 150-178 90-118 (207)
125 PRK03963 V-type ATP synthase s 23.7 4.2E+02 0.009 21.8 11.1 20 236-255 15-34 (198)
126 TIGR01144 ATP_synt_b ATP synth 23.1 3.6E+02 0.0079 20.9 10.7 6 215-220 20-25 (147)
127 PRK06669 fliH flagellar assemb 22.5 5.1E+02 0.011 22.8 8.0 17 237-253 87-103 (281)
128 COG1390 NtpE Archaeal/vacuolar 22.3 4.7E+02 0.01 21.9 9.9 16 240-255 19-34 (194)
129 PRK13454 F0F1 ATP synthase sub 22.2 4.4E+02 0.0096 21.6 11.4 23 233-255 107-129 (181)
130 TIGR00689 rpiB_lacA_lacB sugar 21.0 74 0.0016 25.3 2.1 24 183-206 9-32 (144)
131 PRK13461 F0F1 ATP synthase sub 20.5 4.4E+02 0.0095 20.9 11.4 10 171-180 29-38 (159)
132 PF03780 Asp23: Asp23 family; 20.2 1.7E+02 0.0036 21.4 3.8 24 183-206 78-102 (108)
133 PRK15354 type III secretion sy 20.1 5.5E+02 0.012 21.9 9.6 35 225-259 39-73 (224)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2.6e-41 Score=297.92 Aligned_cols=203 Identities=26% Similarity=0.440 Sum_probs=189.1
Q ss_pred HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcc--cccccCCC
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPY--LASYGVED 150 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~--~~~~~~~~ 150 (296)
++.+|++|||++.++++||+||++||++++....+++.++++++. .++|+|+++|+|+++++|||.||. .++|++.+
T Consensus 2 ~~~~Vv~rfGk~~~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~~ 80 (262)
T cd03407 2 SQVAIIERFGKFFKVAWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEENATDAFYKLGN 80 (262)
T ss_pred cEEEEEeecCcccccCCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcCC
Confidence 367899999999999999999999999998643367999999976 489999999999999999999887 88899999
Q ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHH
Q psy16696 151 PEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKR 230 (296)
Q Consensus 151 ~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~ 230 (296)
+...|.+.+++++|+++|++++++++++|+.|...+.+.+++.+++|||.|++|.|++|+||+++.++|++++.|+++++
T Consensus 81 ~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~ 160 (262)
T cd03407 81 PEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRV 160 (262)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696 231 AAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK 293 (296)
Q Consensus 231 a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~ 293 (296)
+.+.+|++++...+.+|++++++.+ ..|++++++.++.|+|++++.
T Consensus 161 a~~~~Aea~~~~~i~~A~~ea~a~~-----------------~~Aeg~a~a~~~~A~g~~~~~ 206 (262)
T cd03407 161 AAVHKAEAEKIKDIKAAEADAEAKR-----------------LQGVGAAEQRQAIADGLRESI 206 (262)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 778888888888888887764
No 2
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.5e-40 Score=290.36 Aligned_cols=205 Identities=28% Similarity=0.427 Sum_probs=191.0
Q ss_pred HHHHHhhhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH
Q psy16696 73 TQAWVVERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP 151 (296)
Q Consensus 73 ~~~~vv~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 151 (296)
++.+|+++||++.+ +++||+||++||++++..++ ++.+.+++++..++|+|+++|+++++++|||.||..+++.+.++
T Consensus 7 ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~-~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 85 (242)
T cd03405 7 GEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFD-KRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQAVGGE 85 (242)
T ss_pred CeEEEEEEcCccccccCCCCeeEEcCCcceEEEEc-CEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHHHhcCh
Confidence 47899999999998 68999999999999999995 69999998888899999999999999999999998887665544
Q ss_pred H----HHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696 152 E----FAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226 (296)
Q Consensus 152 ~----~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae 226 (296)
. ..|.+.+++++|+++|++++++++++ |++|.+.+.+.+++.+.+|||+|++|.|++|+||+++.++|.+++.|+
T Consensus 86 ~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae 165 (242)
T cd03405 86 ERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAE 165 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHHHHHHHHHH
Confidence 3 67899999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhh
Q psy16696 227 RKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKIL 295 (296)
Q Consensus 227 ~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~~ 295 (296)
+++.+...++++++++.+..|+++++..+ ..|+|++++.+++|+|||+++++
T Consensus 166 ~~~~a~~~~ae~~~~a~~~~aea~~~~~~-----------------~~Aea~a~a~~~~a~gea~a~~~ 217 (242)
T cd03405 166 RERIAAEFRAEGEEEAERIRADADRERTV-----------------ILAEAYREAQEIRGEGDAEAARI 217 (242)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999888 88999999999999999998764
No 3
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=1.6e-39 Score=286.78 Aligned_cols=204 Identities=26% Similarity=0.408 Sum_probs=188.0
Q ss_pred HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHH
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE 152 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~ 152 (296)
++.+|+++||++.++++||+||++||++++..++. +.+....+...++|+|++.|.|+++++|||.||.+++|++.++.
T Consensus 7 ge~~Vv~~fGk~~~~l~pGl~~~~P~i~~v~~~~~-~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~~~~~~~~ 85 (261)
T TIGR01933 7 AERGVVLRFGKYHRTVDPGLNWKPPFIEEVYPVNV-TAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPE 85 (261)
T ss_pred CeEEEEEEcCccccccCCcceEECCCceEEEEeee-EEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHHHhCCCHH
Confidence 47899999999999999999999999999999864 54432233445899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHHHHHHHH
Q psy16696 153 FAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQVEAERKK 229 (296)
Q Consensus 153 ~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~ 229 (296)
..|.+.+++++|+++|+++++++++ +|++|...+.+.+++.+..| ||+|++|.|++++||+++.++|++++.|++++
T Consensus 86 ~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~ 165 (261)
T TIGR01933 86 DSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDE 165 (261)
T ss_pred HHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 79999999999999999965 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhh
Q psy16696 230 RAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKI 294 (296)
Q Consensus 230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~ 294 (296)
++.+.+|+++++..+.+|++++++.+ .+|+|++++++++|+|||+++.
T Consensus 166 ~~~~~~ae~~~~~~~~~a~~~a~~~~-----------------~~Aea~~~~~~~~a~g~a~~~~ 213 (261)
T TIGR01933 166 ERYINEAEAYANEVVPKARGDAQRII-----------------EEARGYKERRINRAKGDVARFT 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999999999999999999888 8899999999999999999854
No 4
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=2.7e-39 Score=290.79 Aligned_cols=204 Identities=25% Similarity=0.375 Sum_probs=186.9
Q ss_pred HHHHhhhcCeeeE-------EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc
Q psy16696 74 QAWVVERMGKYHR-------ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY 146 (296)
Q Consensus 74 ~~~vv~r~G~~~~-------~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~ 146 (296)
+.+|++|||++.+ +++||+||++||++++..+| +|.+.++++...++|+|++.|.|+++++|||.||..+++
T Consensus 27 e~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vd-vR~q~~d~~~~~vlT~D~~~V~VD~~V~yrI~Dp~~~~~ 105 (334)
T PRK11029 27 ERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLD-ARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYL 105 (334)
T ss_pred eEEEEEECCceeccccccccccCCceEEEcCCceEEEEEe-eEEEEeeCCCceEEcCCCCEEEEEEEEEEEECCHHHHHH
Confidence 7999999999987 38999999999999999995 599999999889999999999999999999999987765
Q ss_pred cC--CC---HHHHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHH---------------------------
Q psy16696 147 GV--ED---PEFAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNA--------------------------- 193 (296)
Q Consensus 147 ~~--~~---~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~--------------------------- 193 (296)
.. .| +...|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 106 ~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (334)
T PRK11029 106 ATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEAE 185 (334)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccccccccchhhcccc
Confidence 42 23 446788999999999999999999997 5999999999999954
Q ss_pred ------------hhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696 194 ------------SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKY 261 (296)
Q Consensus 194 ------------l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~ 261 (296)
+.+|||+|.+|.|++++||+++.++|+++|.|++++.+...++++++++.+.+++++.+...
T Consensus 186 ~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~------ 259 (334)
T PRK11029 186 TKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTR------ 259 (334)
T ss_pred cccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------
Confidence 46899999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhh
Q psy16696 262 LCKLLIKRAAILESEGIRAADINVAEGKRQAKIL 295 (296)
Q Consensus 262 ~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~~ 295 (296)
..|+|++++++++|+|||+++++
T Consensus 260 -----------~~AeA~~~a~i~~aegeA~a~~~ 282 (334)
T PRK11029 260 -----------TLAEAERQGRIMRGEGDAEAAKL 282 (334)
T ss_pred -----------HHHHHHHHHHHHHhhhHHHHHHH
Confidence 78999999999999999999764
No 5
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=5.2e-39 Score=296.32 Aligned_cols=203 Identities=23% Similarity=0.372 Sum_probs=191.1
Q ss_pred HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHH
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE 152 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~ 152 (296)
+|.+||+|||++.++++||+||++||+++|..++. +.+........++|+|++.|+|+++|+|||.||..|+|++.+++
T Consensus 103 ~E~gVV~rFGk~~~~l~PGLhfk~PfId~V~~vdv-~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~Dp~~~lf~v~~~~ 181 (419)
T PRK10930 103 AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNV-EAVRELAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPD 181 (419)
T ss_pred CeEEEEEECCcCcceeCCceEEecCceEEEEEEEe-EEEEEccCcceeECCCCCEEEEEEEEEEEECCHHHHHHhccCHH
Confidence 47999999999999999999999999999999864 65555555667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHHHHHHHH
Q psy16696 153 FAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQVEAERKK 229 (296)
Q Consensus 153 ~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~ 229 (296)
..|.+.++++||+++|++++++++++ |++|...+.+.+++.+++| ||+|.+|.|++++||+++.++|++.+.|++++
T Consensus 182 ~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~Af~~v~~Are~~ 261 (419)
T PRK10930 182 DSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENE 261 (419)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 9999999999999999987 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696 230 RAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK 293 (296)
Q Consensus 230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~ 293 (296)
++.+.+|+++++..+.+|++++++.+ .+|+|++++.+++|+|||++.
T Consensus 262 ~~~i~eAeayan~iip~A~gea~~ii-----------------~~AeAyr~~~i~~AeGda~rF 308 (419)
T PRK10930 262 QQYIREAEAYTNEVQPRANGQAQRIL-----------------EEARAYKAQTILEAQGEVARF 308 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999 889999999999999999873
No 6
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=3.8e-38 Score=278.87 Aligned_cols=204 Identities=26% Similarity=0.388 Sum_probs=185.0
Q ss_pred HHHHhhhcCeeeEEecCccEEEeCcceeEEEEeecee------------EeeecCCcceeccCCcEEEEEEEEEEEEcCc
Q psy16696 74 QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKE------------IAIDVPQQSAITSDNVTLSIDGVLYLKINDP 141 (296)
Q Consensus 74 ~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~------------~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~ 141 (296)
+.+|+++||+++++++||+||+|||++++..+++++. .....+...++|+||++|++++++.|||.||
T Consensus 22 e~gVV~~fGk~~~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~ 101 (266)
T cd03404 22 ERGVVLRFGKYSRTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISDP 101 (266)
T ss_pred ceEEeEEcCccccccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEEEEEEEEEECCH
Confidence 7999999999999999999999999988765543221 1112223468999999999999999999999
Q ss_pred ccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHH
Q psy16696 142 YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEA 218 (296)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~a 218 (296)
..++|+..+++..|.+.+++++|+++|++++++++++ |+++.+.+++.+++.+..| ||+|++|.|++++||+++.++
T Consensus 102 ~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a 181 (266)
T cd03404 102 YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDA 181 (266)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHH
Confidence 9999999999999999999999999999999999987 9999999999999999976 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhh
Q psy16696 219 MQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAKI 294 (296)
Q Consensus 219 i~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~~ 294 (296)
|++++.|++++++.+.+|+++++..+..|++++++.+ +.|+|++++.+++|+||+++++
T Consensus 182 ~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~-----------------~~A~a~~~~~~~~ae~~a~~~~ 240 (266)
T cd03404 182 FDDVNKARQDRERLINEAEAYANEVVPKARGEAARII-----------------QEAEAYKEEVIAEAQGEAARFE 240 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-----------------HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988 8899999999999999998854
No 7
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=5.3e-38 Score=283.18 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=184.1
Q ss_pred HHHHhhhcCeeeEEe-------cCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc
Q psy16696 74 QAWVVERMGKYHRIL-------EPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY 146 (296)
Q Consensus 74 ~~~vv~r~G~~~~~~-------~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~ 146 (296)
+.+|+++||++.++. +||+||++||++++..++ ++.++++.++..++|+|+++|.|+++++|||.||..+++
T Consensus 27 e~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd-~r~q~~~~~~~~vlTkD~~~V~Vd~~V~yrV~d~~~~~~ 105 (317)
T TIGR01932 27 ERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFD-AKIQTMDGRPDRIPTKEKKDIIIDTYIRWRIEDFKKYYL 105 (317)
T ss_pred eEEEEEecCceeccccccccccCCCeEEEeccccEEEEee-eeEEEecCCcceeECCCCCEEEEEEEEEEEECCHHHHHH
Confidence 689999999998754 799999999999999995 699999998889999999999999999999999988877
Q ss_pred cCC--C---HHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHH-----------------------------HHHHHHHHH
Q psy16696 147 GVE--D---PEFAITQLAQTTMRSELGKISLDKVFRE-RESL-----------------------------NESIVHAIN 191 (296)
Q Consensus 147 ~~~--~---~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i-----------------------------~~~v~~~l~ 191 (296)
++. + ++..|.+.+++++|+++|+|++++++++ |+++ ...+.+.+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~i~~~~~ 185 (317)
T TIGR01932 106 STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREISQIAN 185 (317)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchhhhhHHHHHHHHHH
Confidence 543 3 5677999999999999999999999975 6655 567788888
Q ss_pred HHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16696 192 NASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAA 271 (296)
Q Consensus 192 ~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~ 271 (296)
+.+.+|||+|++|.|++++||+++.++|.+++.|++++.+...++++++++....+++++++..
T Consensus 186 ~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~---------------- 249 (317)
T TIGR01932 186 SQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRK---------------- 249 (317)
T ss_pred HHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 8999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHhhHHHHHHHHHhhccchhhhhh
Q psy16696 272 ILESEGIRAADINVAEGKRQAKIL 295 (296)
Q Consensus 272 ~~~Aea~~~~~~~~Aeaea~a~~~ 295 (296)
+.|+|++++.+++|+|||+++++
T Consensus 250 -~~aeA~a~a~~~~Aegea~a~~~ 272 (317)
T TIGR01932 250 -ILSEAYRTARIIKGEGDAEAAKI 272 (317)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHH
Confidence 77889999999999999998764
No 8
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=8.3e-38 Score=268.36 Aligned_cols=203 Identities=48% Similarity=0.743 Sum_probs=185.8
Q ss_pred HHHHHhhhcCeeeEEecCccEEEeCcceeE-EEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILIPIIDKI-KYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP 151 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v-~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 151 (296)
++.+|+++||++.++++||+||++||++++ ..++ ++.+++++++..+.|+|+++|.+++++.|||.||.++++..+++
T Consensus 4 ge~~Vv~~~G~~~~~~~pG~~f~~P~~~~v~~~v~-~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 82 (215)
T cd03403 4 YERGVVERLGKYHRTLGPGLHFIIPFIDRIAYKVD-LREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGVEDY 82 (215)
T ss_pred ceEEEEEEcCcCccccCCcEEEEeccceEEEEEEe-eEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcCCCH
Confidence 468899999999999999999999999999 8885 69999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHH
Q psy16696 152 EFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRA 231 (296)
Q Consensus 152 ~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a 231 (296)
+..+.+.+++++|++++++++++++++|+.|.+.+++.+++.+.+|||+|++|.|++++||+++.++|++++.|++++++
T Consensus 83 ~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~~~~~a 162 (215)
T cd03403 83 RYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRA 162 (215)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhh
Q psy16696 232 AILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQA 292 (296)
Q Consensus 232 ~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a 292 (296)
.+.+|++++++.+..++++++.... ..+.+.+..+.+++.|++.+
T Consensus 163 ~i~~A~ge~~a~~~~aea~~~~~~~----------------~~~~~~~~~e~~~~~~~~~~ 207 (215)
T cd03403 163 KIIEAEGERQAAILLAEAAKQAAIN----------------PAALQLRELETLEEIAKEAA 207 (215)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHccC----------------HHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999876430 24566666666666666554
No 9
>KOG2620|consensus
Probab=100.00 E-value=3.6e-38 Score=263.91 Aligned_cols=211 Identities=63% Similarity=0.908 Sum_probs=188.5
Q ss_pred HHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccc--ccccCCCH
Q psy16696 74 QAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYL--ASYGVEDP 151 (296)
Q Consensus 74 ~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~--~~~~~~~~ 151 (296)
+++|+.||||+.++++||+||.+|+++++.++.+++...+..+.++..|+|++.|+++++++|||.||++ +.|+++||
T Consensus 16 ~a~VvER~GkF~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~dp~~~dAsYgvenp 95 (301)
T KOG2620|consen 16 EAAVVERFGKFHRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVDPYADDASYGVENP 95 (301)
T ss_pred HhHHHHHhhhhhhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEecccccccccccCCH
Confidence 6999999999999999999999999999988766677777777888999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHH
Q psy16696 152 EFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRA 231 (296)
Q Consensus 152 ~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a 231 (296)
+..+..+++..+|+.++++++|.++..|+.++..+.+.|++....||++|....|+||.||+.+.++|+....|++.+++
T Consensus 96 ~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~~AM~~q~~AeR~krA 175 (301)
T KOG2620|consen 96 EYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRA 175 (301)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccch
Q psy16696 232 AILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKR 290 (296)
Q Consensus 232 ~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea 290 (296)
.+.++|++++.++.+|++++++.++..++.+ +..+..+.+++++.+..|++-+
T Consensus 176 ailesEger~~~InrAEGek~s~iL~seg~~------~qr~n~a~Gea~ail~~A~a~a 228 (301)
T KOG2620|consen 176 AILESEGERIAQINRAEGEKESKILASEGIA------RQRQNIADGEAEAILAFADAVA 228 (301)
T ss_pred HHhhhhhhhHHhhhhhcchhhhHHhhhHHHH------HHHHHHHhhHHHHHHHHhhccc
Confidence 9999999999999999999999995443322 2223445555555555554443
No 10
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=5.2e-34 Score=243.86 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=154.1
Q ss_pred HHHHHhhhcCeeeEE-ecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH
Q psy16696 73 TQAWVVERMGKYHRI-LEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP 151 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~-~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 151 (296)
++.+|+++||++.++ .+||+||++||++. ..+ ++|.++++.++..+.|+|+++|.|+++++|||.||.+++|+++|+
T Consensus 8 ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~v-d~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~~~v~~~ 85 (219)
T cd03402 8 NQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRV-SLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAVFNVDDY 85 (219)
T ss_pred CeeEEEEEcCcCcccccCCceEEEeccceE-EEE-eeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHHHHcCCH
Confidence 478999999999996 49999999999865 567 569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHH-------hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHH
Q psy16696 152 EFAITQLAQTTMRSELGKISLDKVFR-------ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVE 224 (296)
Q Consensus 152 ~~~l~~~~~~~lr~vi~~~~~~el~~-------~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~ 224 (296)
...+...+++++|+++|+|+++++++ +|+++..++.+.+++.+..|||+|.+|+|+++.||+++.++|.++|+
T Consensus 86 ~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ei~~am~~R~~ 165 (219)
T cd03402 86 EEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQ 165 (219)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHHHHHHHHHHHH
Confidence 99999999999999999999999985 57999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy16696 225 AERKKRAAILESEGI 239 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~ 239 (296)
|++...++...++++
T Consensus 166 Ae~~~~Ar~~~~~Ga 180 (219)
T cd03402 166 ASAIIAARRKIVEGA 180 (219)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999987776653
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=6.7e-33 Score=243.65 Aligned_cols=188 Identities=19% Similarity=0.192 Sum_probs=166.5
Q ss_pred HHHHHhhhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccccc-----c
Q psy16696 73 TQAWVVERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLAS-----Y 146 (296)
Q Consensus 73 ~~~~vv~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~-----~ 146 (296)
++.+|++|||++.+ +++||+||++||++++..++ .+.++++.++..+.|+||++|.++....|++.||..+. |
T Consensus 11 ge~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~-vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~~~~~~~~~y 89 (280)
T cd03406 11 GHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQ-VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNY 89 (280)
T ss_pred CeEEEEEECCcccccccCCceEEecCCceEEEEEE-eEEEEeccCCcccccCCCcEEEEEEEEEEEecCHHHHHHHHHHH
Confidence 37999999999865 88999999999999998885 48888888777789999999999975555555775432 4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHH
Q psy16696 147 GVEDPEFAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQV 223 (296)
Q Consensus 147 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~ 223 (296)
+.++....|.+.+++.+|+++|+++++++++ +|+++...+++.+++.+++| ||+|.+|.|++++||+++.++| ++|
T Consensus 90 ~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~V~~af-erM 168 (280)
T cd03406 90 TADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNY-ELM 168 (280)
T ss_pred hHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHHHHHHH-HHH
Confidence 5567888999999999999999999999998 69999999999999999987 9999999999999999999998 699
Q ss_pred HHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy16696 224 EAERKKR--------AAILESEGIRAADINVAEGKRQAKILEAAKYL 262 (296)
Q Consensus 224 ~Ae~~~~--------a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~ 262 (296)
.||+++. +...+||+++...+.+|+++++...+.-+..-
T Consensus 169 ~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~ 215 (280)
T cd03406 169 EAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKV 215 (280)
T ss_pred HHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999 99999999999999999999998886555444
No 12
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-33 Score=248.35 Aligned_cols=185 Identities=43% Similarity=0.698 Sum_probs=172.7
Q ss_pred HHHHhhhcCeeeEEec-CccEEEeCc---ceeE-EEEeeceeEeeec-CCcceeccCCcEEEEEEEEEEEEcCccccccc
Q psy16696 74 QAWVVERMGKYHRILE-PGLNILIPI---IDKI-KYVQSLKEIAIDV-PQQSAITSDNVTLSIDGVLYLKINDPYLASYG 147 (296)
Q Consensus 74 ~~~vv~r~G~~~~~~~-pG~~~~~P~---~~~v-~~~~~~r~~~~~~-~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~ 147 (296)
+.+++++||++.++.+ ||+||++|| ++.+ ..+ +++.++++. +++.+.|+|++.|.|+++++|||.||.+++++
T Consensus 28 ~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~-~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv~d~~~~~~~ 106 (291)
T COG0330 28 ERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRV-DLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYN 106 (291)
T ss_pred ceEEEEEecceeeecCCCceEEEcCCccceeeeeeee-eeEEEEeccCCcceEEecCCCEEEEEEEEEEEEcCHHHHHHh
Confidence 5889999999999988 999999999 4444 444 568999999 78999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHH-HHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696 148 VEDPEFAITQLAQTTMRSELGKISLDKVFRERE-SLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226 (296)
Q Consensus 148 ~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~-~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae 226 (296)
+++++..+.+.+++.||+++|++++++++++|+ .+...+.+.+++.+++|||.|.+|.|+++.||+++..+|.+++.|+
T Consensus 107 v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev~~a~~~~~~Ae 186 (291)
T COG0330 107 VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAMEKQMAAE 186 (291)
T ss_pred cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999977 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696 227 RKKRAAILESEGIRAADINVAEGKRQAKILEAA 259 (296)
Q Consensus 227 ~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~ 259 (296)
+++++.+.+|+++++..+.+|+++++...+.++
T Consensus 187 r~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~ae 219 (291)
T COG0330 187 RDKRAEILEAEGEAQAAILRAEGEAEAAIILAE 219 (291)
T ss_pred HHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999988884443
No 13
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=1.5e-33 Score=238.47 Aligned_cols=183 Identities=15% Similarity=0.222 Sum_probs=153.5
Q ss_pred HHHHHhhhcCeeeE--EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCc-cccc---c
Q psy16696 73 TQAWVVERMGKYHR--ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP-YLAS---Y 146 (296)
Q Consensus 73 ~~~~vv~r~G~~~~--~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~-~~~~---~ 146 (296)
++++|+++||+... +++||+||++||++++..++ ++.+++++.. .+.|+|+++|+++++++|++.+. ...+ +
T Consensus 8 g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~-~r~~~~~~~~-~~~t~d~~~V~v~~~v~y~v~~~~~~~~~~~~ 85 (196)
T cd03401 8 GHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFD-VRARPRNIES-TTGSKDLQMVNITLRVLFRPDASQLPRIYQNL 85 (196)
T ss_pred CcEEEEEEecCccccCccCCceEEEccccceeEEEE-eeeeEEEEee-cccCCCCeEEEEEEEEEEEeCHHHHHHHHHHh
Confidence 37999999998765 89999999999999999995 5899888753 57899999999999999999632 1112 3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696 147 GVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226 (296)
Q Consensus 147 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae 226 (296)
+.++.+..|.+.+++.+|+++|+|++++++++|++|+..+.+.+++.+.+|||.|++|.|+||+||+++.++|++++.|+
T Consensus 86 ~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~~k~~a~ 165 (196)
T cd03401 86 GEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVEAKQVAQ 165 (196)
T ss_pred CcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHHHHHHHH
Confidence 43445667999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696 227 RKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK 293 (296)
Q Consensus 227 ~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~ 293 (296)
|++++.. ..+ ..|++++++.+++|+|||+++
T Consensus 166 q~~~~a~-------------------~~~-----------------~~a~~ea~~~~~~A~gea~a~ 196 (196)
T cd03401 166 QEAERAK-------------------FVV-----------------EKAEQEKQAAVIRAEGEAEAA 196 (196)
T ss_pred HHHHHHH-------------------HHH-----------------HHHHHHHHHHHHHhhhhhhcC
Confidence 8865531 112 456667777777777777663
No 14
>KOG2621|consensus
Probab=99.97 E-value=8.3e-31 Score=222.32 Aligned_cols=208 Identities=33% Similarity=0.539 Sum_probs=184.9
Q ss_pred cccHhHHHHHHHHhhhccCCeeEecCCcchHHHHH--HHHHHhhhcCeeeE--EecCccEEEeCcceeEEEEeeceeEee
Q psy16696 38 SLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMV--TQAWVVERMGKYHR--ILEPGLNILIPIIDKIKYVQSLKEIAI 113 (296)
Q Consensus 38 ~~~va~~yi~~f~~l~~~~~~vi~p~~~~~~~~~v--~~~~vv~r~G~~~~--~~~pG~~~~~P~~~~v~~~~~~r~~~~ 113 (296)
.+..-+..+..|+.|.- .+-+|.+++.+.++| -|++|++|+|++.. ..+||+.|++||+|++.++ ++|++++
T Consensus 27 ~~~~~~~~l~~~S~llv---i~TfP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kV-DLRt~sf 102 (288)
T KOG2621|consen 27 PLGACEWLLVILSFLLV---LMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKV-DLRTQSF 102 (288)
T ss_pred CcchHHHHHHHHHHHHH---HHHhHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeee-eeeEEee
Confidence 34455555666665422 233688888888888 56899999999987 7799999999999999999 5899999
Q ss_pred ecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHH
Q psy16696 114 DVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNA 193 (296)
Q Consensus 114 ~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~ 193 (296)
++++++++|+|.+.|.|+++|+|||.||...+.+++|.....+-+.+..||+++|+.++.+++++|+.|+..+...|.+.
T Consensus 103 nVPpqeIltkDsvtvsVdAvVyyri~dpi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~ 182 (288)
T KOG2621|consen 103 NVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEA 182 (288)
T ss_pred cCCHHHHhcccceEEEeceEEEEEecCHHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16696 194 SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEG 249 (296)
Q Consensus 194 l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a 249 (296)
...|||+|++|.|+||++|.++++++.....|.+++++++..||++..+....+++
T Consensus 183 T~~WGvkVeRVEikDvrlp~qlqramaaeAeA~reA~Akviaaege~~as~al~~a 238 (288)
T KOG2621|consen 183 TEPWGVKVERVEIKDVRLPAQLQRAMAAEAEATREARAKVIAAEGEKKASEALKEA 238 (288)
T ss_pred ccccceEEEEEEEeeeechHhhhhhhhchhhhhhhhhhhHHHHHhhhHHHHHHHHh
Confidence 99999999999999999999999999999999999999888888887765554443
No 15
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=2.2e-29 Score=209.49 Aligned_cols=167 Identities=28% Similarity=0.467 Sum_probs=121.5
Q ss_pred HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCC--cceeccCCcEEEEEEEEEEEEcCcccccccC--
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQ--QSAITSDNVTLSIDGVLYLKINDPYLASYGV-- 148 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~--~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~-- 148 (296)
++++|+++||++..+++||+||++||++++..++ ++.++++++. ..+.|+|+.++.+++++.|||.|+..++...
T Consensus 6 g~~~V~~~~G~~~~~~~~G~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~~~~~~ 84 (179)
T PF01145_consen 6 GEVGVVVRFGKVKDVLGPGLHFVIPFIQKVYVYP-TRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFVQNYEG 84 (179)
T ss_dssp --------------------------EEE--S---SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCCCCCSS
T ss_pred CEEEEEEECCeEeEEECCCeEEEeCCcCeEEEEe-CEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHHHhhhc
Confidence 5799999999999999999999999999999885 5899999987 7899999999999999999998887777666
Q ss_pred --CCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHH
Q psy16696 149 --EDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAE 226 (296)
Q Consensus 149 --~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae 226 (296)
.++...|++.+++++|++++++++++++++|.++.+.+.+.|++.+.+|||+|.+|.|.++++|+++.+++.+++.++
T Consensus 85 ~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~i~~~~~a~ 164 (179)
T PF01145_consen 85 GEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEAIEEKQRAE 164 (179)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHH
Q psy16696 227 RKK-RAAILESEGIR 240 (296)
Q Consensus 227 ~~~-~a~~~~Ae~~~ 240 (296)
+++ ++.+.+|++++
T Consensus 165 ~~~~~~~~~~a~~ea 179 (179)
T PF01145_consen 165 QEAQQAEIERAEAEA 179 (179)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC
Confidence 998 66666665543
No 16
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=4.4e-29 Score=204.03 Aligned_cols=149 Identities=48% Similarity=0.780 Sum_probs=140.3
Q ss_pred HHHHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHH
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPE 152 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~ 152 (296)
++++|+++||++.++++||+||++||++++..++ ++.+++.++...+.|+|++++++++++.|||.||..++++..+++
T Consensus 9 g~~~v~~~~G~~~~~~~pG~~~~~P~~~~~~~~~-~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~~~~~~~~~ 87 (160)
T smart00244 9 GEAGVVERLGRVLRVLGPGLHFLIPFIDRVKKVD-LRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKAVYRVLDAD 87 (160)
T ss_pred cEEEEEEecCccccccCCCEEEEecceeEEEEEe-eEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHHhhhcCCHH
Confidence 4788999999999999999999999999999995 599999998888999999999999999999999998888887777
Q ss_pred -HHHHHHHHHHHHHHHccCCHHHHHH-hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696 153 -FAITQLAQTTMRSELGKISLDKVFR-ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQ 222 (296)
Q Consensus 153 -~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~ 222 (296)
..+.+.+++++|+++++++++++++ +|+++.+.+.+.+++.+++||++|.+|.|+++++|+++.++++++
T Consensus 88 ~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai~~k 159 (160)
T smart00244 88 YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAMEQQ 159 (160)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 5899999999999999999999998 699999999999999999999999999999999999999999865
No 17
>KOG3090|consensus
Probab=99.89 E-value=9.7e-23 Score=167.49 Aligned_cols=197 Identities=13% Similarity=0.196 Sum_probs=165.8
Q ss_pred EecCCcchHHHHHHHHHHh-hhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEE
Q psy16696 60 IVPSDANNIASMVTQAWVV-ERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLK 137 (296)
Q Consensus 60 i~p~~~~~~~~~v~~~~vv-~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yr 137 (296)
.+..+++++.| |+++++ .|+|.+.. +++.|.||.+|||++...+| .|-++..+.+ ..-|+|-++|++...|--|
T Consensus 33 ~v~~sl~nVdg--GHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYD-vRarP~~i~S-~tGskDLQmVnI~lRVLsR 108 (290)
T KOG3090|consen 33 GVTQSLYNVDG--GHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYD-VRARPRLISS-PTGSKDLQMVNIGLRVLSR 108 (290)
T ss_pred eecceeEeecC--CceEEEEeccccchhccccCCceEeeeccccceeee-eccCcccccC-CCCCcceeEEEeeeEEecC
Confidence 34455555554 566655 47888776 89999999999999999996 4888887754 4789999999999988877
Q ss_pred EcCc---c-cccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCh
Q psy16696 138 INDP---Y-LASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPS 213 (296)
Q Consensus 138 I~d~---~-~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~ 213 (296)
.... . +...+.++.+..+.+++.+.|+.++++|+.+++++.|+.++..+++.|.++..++.|-+++|.|+.++|.+
T Consensus 109 P~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~ 188 (290)
T KOG3090|consen 109 PMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGK 188 (290)
T ss_pred CChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCH
Confidence 6421 1 12245566778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy16696 214 RVNEAMQMQVEAERKKRAA---ILESEGIRAADINVAEGKRQAKILEAAK 260 (296)
Q Consensus 214 ~~~~ai~~~~~Ae~~~~a~---~~~Ae~~~~~~~~~A~a~a~~~~~ea~~ 260 (296)
++..+++.++.|.|++++. +.+|+.+++..+.+|+++++.+.+-.++
T Consensus 189 efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeA 238 (290)
T KOG3090|consen 189 EFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA 238 (290)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH
Confidence 9999999999999999886 4578999999999999999988864443
No 18
>KOG3083|consensus
Probab=99.86 E-value=4.7e-22 Score=163.33 Aligned_cols=191 Identities=16% Similarity=0.240 Sum_probs=157.8
Q ss_pred ecCCcchHHHHHHHHHHhh-hcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEE
Q psy16696 61 VPSDANNIASMVTQAWVVE-RMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKI 138 (296)
Q Consensus 61 ~p~~~~~~~~~v~~~~vv~-r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI 138 (296)
++..+.++.+ ++++|++ ||-.+.. +.+.|.||.+||.++...+|. |..+..++. ..-|||-++|++...+.||.
T Consensus 23 ~~s~ly~vdg--g~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~-rs~p~~v~~-itGskdLQ~VniTlril~rp 98 (271)
T KOG3083|consen 23 VNSALYNVDG--GHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDC-RSRPRNVPV-ITGSKDLQNVNITLRILFRP 98 (271)
T ss_pred hhhhhcccCC--CceeEEeecccchhhhcccCCceeeeeeccCcEEEec-cCCCccccc-ccCchhhhcccceEEEEecc
Confidence 3444444443 5666664 6655555 889999999999999999864 777777744 36799999999999999987
Q ss_pred cCc---cccc-ccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChH
Q psy16696 139 NDP---YLAS-YGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSR 214 (296)
Q Consensus 139 ~d~---~~~~-~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~ 214 (296)
... .-|. .+.++.+..|.++....|++++++++..++++.|+.++..+.+.+.+....+||.+++|.|++++|-.+
T Consensus 99 ~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkE 178 (271)
T KOG3083|consen 99 VVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKE 178 (271)
T ss_pred cccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHH
Confidence 522 2222 345566777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHH
Q psy16696 215 VNEAMQMQVEAERKKRAAI---LESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 215 ~~~ai~~~~~Ae~~~~a~~---~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
+.++++.|+.|+|++++.. .+|+.++.+.++.|+++.+.+.
T Consensus 179 Ft~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~ 222 (271)
T KOG3083|consen 179 FTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAE 222 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHH
Confidence 9999999999999998874 5678888888888888887766
No 19
>KOG2962|consensus
Probab=99.85 E-value=8.3e-20 Score=150.94 Aligned_cols=214 Identities=20% Similarity=0.233 Sum_probs=165.5
Q ss_pred HHHHHhhhcCeeeE-EecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEE--EEEEcCcccc---cc
Q psy16696 73 TQAWVVERMGKYHR-ILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVL--YLKINDPYLA---SY 146 (296)
Q Consensus 73 ~~~~vv~r~G~~~~-~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v--~yrI~d~~~~---~~ 146 (296)
|+.+|.+|-|.... +.+||+|+.+||+.++..+.+ ..|+-.+.+..|.|+.|+.+.++-.- ++-..|.... .|
T Consensus 29 GHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQv-TLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d~Vydiv~NY 107 (322)
T KOG2962|consen 29 GHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQV-TLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNY 107 (322)
T ss_pred CceEEEEecceeeeccCCCCcEEEeeeeeceeeeEE-EeeccccccCCCCCCCcEEEEEehhhhhhhhchhHHHHHHHHc
Confidence 67889999999887 889999999999999988864 88898999999999999999988432 2222222111 15
Q ss_pred cCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEEEeecCCChHHHHHHHHHH
Q psy16696 147 GVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNASEAW--GITCLRYEIRDIKLPSRVNEAMQMQV 223 (296)
Q Consensus 147 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~l~~~--Gi~i~~v~I~~i~~p~~~~~ai~~~~ 223 (296)
.+++...++.+-+...+.+.|+.+++.++|-+ .++|.++++..|+.+|..+ |++|..|+++....|+.+.+.++ .|
T Consensus 108 tvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E-~M 186 (322)
T KOG2962|consen 108 TVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFE-LM 186 (322)
T ss_pred ccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHH-HH
Confidence 66677788999999999999999999999977 9999999999999999987 99999999999999999999887 55
Q ss_pred HHHHH--------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhhcc
Q psy16696 224 EAERK--------KRAAILESEGIRAADINVAEGKRQAKILEAAKYL-CKLLIKRAAILESEGIRAADINVAEG 288 (296)
Q Consensus 224 ~Ae~~--------~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~-~~~~~~~~~~~~Aea~~~~~~~~Aea 288 (296)
.+|.. ..-...+||.++..++++|+..++...+--+... +++.++.-..++.+++-.++..+|.+
T Consensus 187 E~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~LarekskADA 260 (322)
T KOG2962|consen 187 EAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLAREKSKADA 260 (322)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHhhhhhhccH
Confidence 55443 2333456788888888888888877665444433 55555555555555555555444443
No 20
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=168.60 Aligned_cols=177 Identities=23% Similarity=0.394 Sum_probs=156.6
Q ss_pred CeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccccc------ccCC----CH
Q psy16696 82 GKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLAS------YGVE----DP 151 (296)
Q Consensus 82 G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~------~~~~----~~ 151 (296)
|.-.+++.+|+||++|+++...++ +++..++++....++|+||.|++++++.+.+|.|....+ |+.. +.
T Consensus 58 g~~~~vV~gGg~~v~Pi~q~~~r~-~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l 136 (548)
T COG2268 58 GGGQKVVRGGGAIVMPIFQTIERM-SLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDL 136 (548)
T ss_pred cCCccEEecCceEEecceeeeEEe-eeeeeeeeeeeeeeEecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHH
Confidence 444468899999999999999999 579999999877899999999999999999998763322 3333 45
Q ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCC-------hHHHHHHHHHHH
Q psy16696 152 EFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLP-------SRVNEAMQMQVE 224 (296)
Q Consensus 152 ~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p-------~~~~~ai~~~~~ 224 (296)
...+...++++||.+++++|+.+|+.+|..|.+.+.+.+..+|.+.|+.|+++.|+|+..+ ..|.++.+.+.+
T Consensus 137 ~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i 216 (548)
T COG2268 137 EQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRI 216 (548)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHH
Confidence 6678889999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQAKILEAA 259 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~ 259 (296)
++..+++.+.+++.+++..+..++++.+..+.+.+
T Consensus 217 ~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~ 251 (548)
T COG2268 217 AQVLQDAEIAENEAEKETEIAIAEANRDAKLVELE 251 (548)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhh
Confidence 99999999999999999999998888877776555
No 21
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.83 E-value=4.7e-20 Score=157.22 Aligned_cols=149 Identities=21% Similarity=0.318 Sum_probs=123.2
Q ss_pred HHHHHhhhcCeeeEEecCccEEEe----Ccc---------------eeEEEEeeceeEeeec--CCc----ceeccCCcE
Q psy16696 73 TQAWVVERMGKYHRILEPGLNILI----PII---------------DKIKYVQSLKEIAIDV--PQQ----SAITSDNVT 127 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~~~----P~~---------------~~v~~~~~~r~~~~~~--~~~----~~~T~D~~~ 127 (296)
++.+|++++|++.++++||.|+.+ |++ ..+..++ ++.+.... .+. ...|+|+++
T Consensus 22 ~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 100 (207)
T cd03408 22 GQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFN-TRVFTDLLWGTPAPVFGRDSEFGGVP 100 (207)
T ss_pred CcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEE-CEEEeccccCCCCCeeeeCCccceEE
Confidence 378999999999999888888666 433 2355664 36555421 111 245788999
Q ss_pred EEEEEEEEEEEcCcccccccC---------CCHHHHHHHHHHHHHHHHHccCCHHHHHHh--HHHHHHHHHHHHHHHhhc
Q psy16696 128 LSIDGVLYLKINDPYLASYGV---------EDPEFAITQLAQTTMRSELGKISLDKVFRE--RESLNESIVHAINNASEA 196 (296)
Q Consensus 128 v~v~~~v~yrI~d~~~~~~~~---------~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~v~~~l~~~l~~ 196 (296)
|.+++++.|||.||..++.+. ++....+.+.+++++|++++++++++++.+ |++|++.+++.+.+.+.+
T Consensus 101 v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v~~~l~~~~~~ 180 (207)
T cd03408 101 LRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFAS 180 (207)
T ss_pred EEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999998877543 246678999999999999999999999977 999999999999999999
Q ss_pred cCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696 197 WGITCLRYEIRDIKLPSRVNEAMQMQ 222 (296)
Q Consensus 197 ~Gi~i~~v~I~~i~~p~~~~~ai~~~ 222 (296)
|||+|.+|.|++|++|+++.+++.++
T Consensus 181 ~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 181 FGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred cCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 99999999999999999999998854
No 22
>KOG2668|consensus
Probab=99.82 E-value=2.8e-19 Score=155.88 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=148.3
Q ss_pred HHHhhhcCeeeEEecCccEEEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEc--Cccc--------c
Q psy16696 75 AWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIN--DPYL--------A 144 (296)
Q Consensus 75 ~~vv~r~G~~~~~~~pG~~~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~--d~~~--------~ 144 (296)
..+++.+|.-...+-+| .|.||| +++..+ ++.++++++....+.|+.|+|+.|.++.+..|. |+.. |
T Consensus 10 ~l~itg~g~~~~~lv~~-~wvf~w-q~~q~~-~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~elL~~A~e~f 86 (428)
T KOG2668|consen 10 YLAITGGGIEDIKLVKK-SWVFPW-QQCTVF-DVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADELLLYACEQF 86 (428)
T ss_pred eEEeecccccCceeccc-ceeeee-eeeeEE-eecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHHHHHHHHHh
Confidence 33444455544445454 367788 899999 579999999988899999999999999888875 4322 1
Q ss_pred cc-cCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCCh--HHHHHHHH
Q psy16696 145 SY-GVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPS--RVNEAMQM 221 (296)
Q Consensus 145 ~~-~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~--~~~~ai~~ 221 (296)
+. +..+....+...+++++|.++++||++++|.+|.+|...+.+-...+|..+||+|.+..|+|+.+.+ +|..++..
T Consensus 87 lgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g~~YlssLGk 166 (428)
T KOG2668|consen 87 LGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPGHEYLSSLGK 166 (428)
T ss_pred cCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccchHHHHHhhh
Confidence 11 1234666788899999999999999999999999999999999999999999999999999999877 79999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 222 QVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 222 ~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
..+++..+++.+..||++++.=+.+|.+..+..-
T Consensus 167 a~taev~rdArIgvAEAk~eaGikEa~~~~~~~a 200 (428)
T KOG2668|consen 167 ATTAEVARDARIGVAEAKREAGIKEATGLTEQNA 200 (428)
T ss_pred HHHHHHHhhcccchHHhhhhcchhhhhHHHHHhH
Confidence 9999999999999999999988888888776543
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.81 E-value=1.8e-19 Score=142.07 Aligned_cols=115 Identities=18% Similarity=0.350 Sum_probs=104.3
Q ss_pred eceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccc-------c--CCCHHHHHHHHHHHHHHHHHccCCHHHHHH
Q psy16696 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASY-------G--VEDPEFAITQLAQTTMRSELGKISLDKVFR 177 (296)
Q Consensus 107 ~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~-------~--~~~~~~~l~~~~~~~lr~vi~~~~~~el~~ 177 (296)
++|.++++++++.++|+|++++.|++++.|||.||..++. + ..+....+.+.+++++|+++|+|+++++++
T Consensus 3 ~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~~ 82 (128)
T cd03399 3 SLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYE 82 (128)
T ss_pred cccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999999999999999999999999999999875442 1 134677889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHH
Q psy16696 178 ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQM 221 (296)
Q Consensus 178 ~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~ 221 (296)
+|++|..++.+.++..+.+|||+|.+|.|++|++|++|.+++.+
T Consensus 83 ~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 83 DRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 99999999999999999999999999999999999999888764
No 24
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.77 E-value=5.2e-18 Score=132.97 Aligned_cols=115 Identities=16% Similarity=0.314 Sum_probs=99.2
Q ss_pred eceeEeeecCCcceeccCCcEEEEEEEEEEEEcCccccc----ccCCCHHHHHHHHHHHHHHHHHccCCHHHHHH-hHHH
Q psy16696 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLAS----YGVEDPEFAITQLAQTTMRSELGKISLDKVFR-ERES 181 (296)
Q Consensus 107 ~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~----~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~ 181 (296)
++|.++.+. +..++|+||++|.++++++|||.++..+. ++....+..|.+.+++++|+++|+|+++++++ +|++
T Consensus 4 ~~r~~~~~~-~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 4 STRLQEVDE-KIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred cceeeeccc-ceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 346777665 45699999999999999999997554321 22333556799999999999999999999996 6999
Q ss_pred HHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696 182 LNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQ 222 (296)
Q Consensus 182 i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~ 222 (296)
|.+.+.+.+++.+.+|||+|.+|.|++++||+++.+++++|
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999876
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.71 E-value=3.5e-16 Score=121.10 Aligned_cols=114 Identities=36% Similarity=0.647 Sum_probs=102.4
Q ss_pred eeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCH--HHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHH
Q psy16696 109 KEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDP--EFAITQLAQTTMRSELGKISLDKVFRERESLNESI 186 (296)
Q Consensus 109 r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~--~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v 186 (296)
+..+.+.....+.|+||.++.+++++.|+|.||..+++....+ ...+.+.+.+++|+++++++++++.++|.+|.+.+
T Consensus 5 ~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v 84 (121)
T cd02106 5 RRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEV 84 (121)
T ss_pred eeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHH
Confidence 4555666677899999999999999999999987555554443 47899999999999999999999999999999999
Q ss_pred HHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696 187 VHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQ 222 (296)
Q Consensus 187 ~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~ 222 (296)
++.+...+.+||++|.+|.|+++++|+++.++++++
T Consensus 85 ~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 85 REALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 999999999999999999999999999999999865
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.38 E-value=1.6e-11 Score=104.33 Aligned_cols=149 Identities=22% Similarity=0.320 Sum_probs=114.6
Q ss_pred HHHHHhhhcCeeeEEecCccEE-------------------EeCcceeEEEEeeceeE-eeecCCc-ce--eccC--CcE
Q psy16696 73 TQAWVVERMGKYHRILEPGLNI-------------------LIPIIDKIKYVQSLKEI-AIDVPQQ-SA--ITSD--NVT 127 (296)
Q Consensus 73 ~~~~vv~r~G~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~r~~-~~~~~~~-~~--~T~D--~~~ 127 (296)
+|.+|+++-|++..+.+||.|- ..||-..|+.++. +.. ...+... .+ ...+ .++
T Consensus 22 gQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~-~~~~~~kwGT~~pi~~~D~~~~~v~ 100 (211)
T PF13421_consen 22 GQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNT-KEITNIKWGTPNPIPYRDPEYGPVR 100 (211)
T ss_pred CCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEEC-eEecCCccCCCCCeeecCCCCCcEE
Confidence 3788999999999999999993 2355566777743 443 3344322 12 2222 467
Q ss_pred EEEEEEEEEEEcCcccccc---------cCCCHHHHHHHHHHHHHHHHHcc--CCHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy16696 128 LSIDGVLYLKINDPYLASY---------GVEDPEFAITQLAQTTMRSELGK--ISLDKVFRERESLNESIVHAINNASEA 196 (296)
Q Consensus 128 v~v~~~v~yrI~d~~~~~~---------~~~~~~~~l~~~~~~~lr~vi~~--~~~~el~~~R~~i~~~v~~~l~~~l~~ 196 (296)
|...++..|||.||..|+. ..++....+++.+...+.+.+++ +++.+|..+-.+|++.+++.+++.+..
T Consensus 101 lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~~~l~~~~~~ 180 (211)
T PF13421_consen 101 LRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALKEKLNPEFER 180 (211)
T ss_pred EEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999999977662 23345566777777777777764 789999999999999999999999999
Q ss_pred cCeEEEEEEEeecCCChHHHHHHHHH
Q psy16696 197 WGITCLRYEIRDIKLPSRVNEAMQMQ 222 (296)
Q Consensus 197 ~Gi~i~~v~I~~i~~p~~~~~ai~~~ 222 (296)
+||+|.++.|.+|++|++..+.+.++
T Consensus 181 ~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 181 YGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred cCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 99999999999999999999998854
No 27
>KOG2620|consensus
Probab=99.14 E-value=6.8e-11 Score=100.24 Aligned_cols=77 Identities=36% Similarity=0.427 Sum_probs=73.1
Q ss_pred CchHHHHHHHHHHHhHHhHHHHHHHhcccCccchhcccHhHHHHHHHHhhhccCCeeEecCCcchHHHHHHHHHHhh
Q psy16696 3 TTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSDANNIASMVTQAWVVE 79 (296)
Q Consensus 3 ~~~~a~~~~~~a~a~a~~~~~~~~a~~~~g~~~a~~~~va~~yi~~f~~l~~~~~~vi~p~~~~~~~~~v~~~~vv~ 79 (296)
+.|+|++|+..|++++.++.+++-.+.+.||.+|++|+++++||.+|++|++.++++++|.+.+++.+|+.|..-++
T Consensus 213 a~Gea~ail~~A~a~a~~~a~~~~~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg~v~~mvaQa~~~~ 289 (301)
T KOG2620|consen 213 ADGEAEAILAFADAVAGTSAKLVMDLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPGDVRDMVAQALNGY 289 (301)
T ss_pred HhhHHHHHHHHhhcccchHHHHHHHHHHhcchhhHHHHHHHHHHHhhhhhcccCceEEecCCCCcHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999976443
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.90 E-value=1.8e-08 Score=86.57 Aligned_cols=149 Identities=16% Similarity=0.268 Sum_probs=111.9
Q ss_pred HHHHhhhcCeeeEEe-cCccE-------------------EEeCcceeEEEEeeceeEe-eecC-Ccceecc-----CCc
Q psy16696 74 QAWVVERMGKYHRIL-EPGLN-------------------ILIPIIDKIKYVQSLKEIA-IDVP-QQSAITS-----DNV 126 (296)
Q Consensus 74 ~~~vv~r~G~~~~~~-~pG~~-------------------~~~P~~~~v~~~~~~r~~~-~~~~-~~~~~T~-----D~~ 126 (296)
+-+++..-|++..+. ++|.+ |..|+-+.|+.++ ++.+. +.+. +..+.-. .+.
T Consensus 48 qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvn-tqe~~girwGT~qpin~~dn~~~g~l 126 (345)
T COG4260 48 QMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVN-TQEIKGIRWGTPQPINYFDNFYNGEL 126 (345)
T ss_pred ceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEe-cceecceecCCCCCeeccccccccee
Confidence 455666678887754 47765 2355667777774 45555 4443 2222222 357
Q ss_pred EEEEEEEEEEEEcCccccc---------ccCCCHHHHHHHHHHHHHHHHHccCC--HHHHHHhHHHHHHHHHHHHHHHhh
Q psy16696 127 TLSIDGVLYLKINDPYLAS---------YGVEDPEFAITQLAQTTMRSELGKIS--LDKVFRERESLNESIVHAINNASE 195 (296)
Q Consensus 127 ~v~v~~~v~yrI~d~~~~~---------~~~~~~~~~l~~~~~~~lr~vi~~~~--~~el~~~R~~i~~~v~~~l~~~l~ 195 (296)
++...++..|+|.||..++ |.+++.++.+-+.+.++|...|.++. +..|-.+--+++..+.+.|.+.+.
T Consensus 127 ~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~ 206 (345)
T COG4260 127 FLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWT 206 (345)
T ss_pred EEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHHHHHhHHHH
Confidence 7888999999999997654 44566777788888888888887764 445557889999999999999999
Q ss_pred ccCeEEEEEEEeecCCChHHHHHHHHHH
Q psy16696 196 AWGITCLRYEIRDIKLPSRVNEAMQMQV 223 (296)
Q Consensus 196 ~~Gi~i~~v~I~~i~~p~~~~~ai~~~~ 223 (296)
.+|..|++|.|.+|++|++.+..|..+.
T Consensus 207 q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 207 QYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred hhCceEeeEEEEEecCcHHHHHHHHhhc
Confidence 9999999999999999999999988654
No 29
>PTZ00491 major vault protein; Provisional
Probab=98.86 E-value=3.2e-07 Score=90.25 Aligned_cols=213 Identities=14% Similarity=0.164 Sum_probs=131.7
Q ss_pred CeeeEEecCccEEEeCcceeEEEEe-e---------ceeEeeecCC------cceeccCCcEEEEEEEEEEEEc----Cc
Q psy16696 82 GKYHRILEPGLNILIPIIDKIKYVQ-S---------LKEIAIDVPQ------QSAITSDNVTLSIDGVLYLKIN----DP 141 (296)
Q Consensus 82 G~~~~~~~pG~~~~~P~~~~v~~~~-~---------~r~~~~~~~~------~~~~T~D~~~v~v~~~v~yrI~----d~ 141 (296)
++-.-+.+|-+.+.-|- +.+..+. | ++...+.+++ ..+-|+|...+.+..+.+|... ||
T Consensus 481 ~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~l~LsYnW~F~v~~~d~ 559 (850)
T PTZ00491 481 KKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLALQLSYNWYFDVTDGNP 559 (850)
T ss_pred CceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEEEEEEEEEEEecCCCCh
Confidence 44334778888887775 3333320 0 1111122222 2367999999999999999986 45
Q ss_pred c--cccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh-HHHHHHHHHHHHHHH--------hhccCeEEEEEEEeecC
Q psy16696 142 Y--LASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE-RESLNESIVHAINNA--------SEAWGITCLRYEIRDIK 210 (296)
Q Consensus 142 ~--~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~v~~~l~~~--------l~~~Gi~i~~v~I~~i~ 210 (296)
. ...|++.|+-...-..+.+-+|..++..++++++.+ -.-|.+.+.....+. +...|+.|.+|.|+++.
T Consensus 560 ~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F~~N~lvit~VDvqsvE 639 (850)
T PTZ00491 560 EDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRFPANNLVITNVDVQSVE 639 (850)
T ss_pred hhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEEccCCeEEEEEeeeeee
Confidence 3 567999999999999999999999999999999976 444455555522221 24569999999999999
Q ss_pred CCh-HHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy16696 211 LPS-RVNEAMQMQ-------------VEAERKKRAAILESEGIRAADI--NVAEGKRQAKI-LEAAKYLCKLLIKRAAIL 273 (296)
Q Consensus 211 ~p~-~~~~ai~~~-------------~~Ae~~~~a~~~~Ae~~~~~~~--~~A~a~a~~~~-~ea~~~~~~~~~~~~~~~ 273 (296)
|-+ ...+++.+- ..|+++++....+|++.-+.++ .+|+++..+.. ++.++.-++-...=++..
T Consensus 640 pvD~~tr~~LqkSVqlAiEItt~sqEa~A~h~a~~~eQea~g~Lerqk~~d~~~aE~~r~~llel~a~s~aves~g~a~a 719 (850)
T PTZ00491 640 PVDERTRDSLQKSVQLAIEITTKSQEAAARHQAELLEQEARGRLERQKMHDKAKAEEQRTKLLELQAESAAVESSGQSRA 719 (850)
T ss_pred ecCHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHHHHHHHHHHhHHHHHhhcchHHH
Confidence 844 455554332 2344455555555665444443 44444443332 344433322222333445
Q ss_pred hhHHHHHHHHHhhccchhhhhh
Q psy16696 274 ESEGIRAADINVAEGKRQAKIL 295 (296)
Q Consensus 274 ~Aea~~~~~~~~Aeaea~a~~~ 295 (296)
+|+|.+++..+++|++-+.+++
T Consensus 720 ~a~a~aea~~ie~e~~v~~a~l 741 (850)
T PTZ00491 720 EALAEAEARLIEAEAEVEQAEL 741 (850)
T ss_pred HHHHHHHHHhhhhhhHHHHHHh
Confidence 6666666666666666555544
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.65 E-value=0.0014 Score=56.71 Aligned_cols=107 Identities=16% Similarity=0.274 Sum_probs=82.2
Q ss_pred ceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHH
Q psy16696 108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIV 187 (296)
Q Consensus 108 ~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~ 187 (296)
..+..++.|......+||..+.+.+.+..|-+ ...+.+....+..+.+.-++.+..+-+.-+..+++.+-+.|+..+.
T Consensus 122 VnPkVI~~P~i~aVAkdGIql~~kArVTVRaN--i~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL 199 (316)
T PF12127_consen 122 VNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN--IDRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVL 199 (316)
T ss_pred cCCeeecCcchhhhhcCCeEEEEEEEEEEEec--HHHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHH
Confidence 35566677777788999999998888888862 2334555677888888999999999999999999999999998886
Q ss_pred HHHHHHhh-ccCeEEEEEEEeecCCChHHHHHH
Q psy16696 188 HAINNASE-AWGITCLRYEIRDIKLPSRVNEAM 219 (296)
Q Consensus 188 ~~l~~~l~-~~Gi~i~~v~I~~i~~p~~~~~ai 219 (296)
+. -|+ .--++|.|+.|-|++.-.++-..+
T Consensus 200 ~k---gLDagTAFeIlSIDIaDidVG~NIGA~L 229 (316)
T PF12127_consen 200 EK---GLDAGTAFEILSIDIADIDVGENIGAKL 229 (316)
T ss_pred hh---CCCcCceeEEEEeeeeccccchhhchhh
Confidence 54 333 346899999999999876654433
No 31
>PRK13665 hypothetical protein; Provisional
Probab=97.27 E-value=0.0037 Score=53.97 Aligned_cols=107 Identities=14% Similarity=0.247 Sum_probs=77.7
Q ss_pred ceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHH
Q psy16696 108 LKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIV 187 (296)
Q Consensus 108 ~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~ 187 (296)
..+..++.|......+||..+.+.+.+..|-+ ...+.+....+..+.+.-++.+..+-+.-+..+++.+-+.|+..+.
T Consensus 127 VnPkVI~~P~i~aVAkdGIql~~kARVTVRaN--i~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL 204 (316)
T PRK13665 127 VNPKVIETPFIAAVAKDGIEVKAKARVTVRAN--IDRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTVL 204 (316)
T ss_pred cCCeeecCCcchhhcccCeEEEEEEEEEeehh--HHHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHHH
Confidence 35666777777788999999988888877742 2223344455556667777788888888899999999999987664
Q ss_pred HHHHHHhhc-cCeEEEEEEEeecCCChHHHHHH
Q psy16696 188 HAINNASEA-WGITCLRYEIRDIKLPSRVNEAM 219 (296)
Q Consensus 188 ~~l~~~l~~-~Gi~i~~v~I~~i~~p~~~~~ai 219 (296)
+ +-|+. --++|.|+.|-|++.-.++-..+
T Consensus 205 ~---kGLDagTAFeIlSIDIADvdVG~NIGA~L 234 (316)
T PRK13665 205 S---KGLDAGTAFEILSIDIADVDVGKNIGAKL 234 (316)
T ss_pred h---ccCCcCceeEEEEEeeeccccchhhchhh
Confidence 4 33443 36899999999999877655444
No 32
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.19 E-value=0.0013 Score=58.12 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=58.4
Q ss_pred CCchHHHHHHHHHHHhHHhHHHHHHHhcccCccchhcccHhHHHHHHHHhhhccC-CeeEecCCcchHHHHHHH
Q psy16696 2 CTTPVATALLSVAEARAKSLDLVAKALETKDGRSAASLSIAEQYVKAFNELAKTN-NTLIVPSDANNIASMVTQ 74 (296)
Q Consensus 2 ~~~~~a~~~~~~a~a~a~~~~~~~~a~~~~g~~~a~~~~va~~yi~~f~~l~~~~-~~vi~p~~~~~~~~~v~~ 74 (296)
++.|+|+++...|++.++.+..+.++.....++.+..+.+...|++++..++... .++++|+...++.+++.+
T Consensus 187 ~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~~~~kviv~p~~~~~~~~~~~~ 260 (262)
T cd03407 187 QGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGRSSSTVVFRPHGPGGAQDIYAQ 260 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhCCCCEEEecCCCccHHHHHHh
Confidence 3567888888888888888888888875456677778889999999999998544 557889998888776654
No 33
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.46 E-value=0.028 Score=42.58 Aligned_cols=93 Identities=10% Similarity=0.199 Sum_probs=67.7
Q ss_pred ceeccCCcEEEEEEEEEEEEcC----c--ccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHH-HHHHHH---
Q psy16696 119 SAITSDNVTLSIDGVLYLKIND----P--YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESL-NESIVH--- 188 (296)
Q Consensus 119 ~~~T~D~~~v~v~~~v~yrI~d----~--~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i-~~~v~~--- 188 (296)
.+-|+|...+.+..+.+|.-.- | ....|++.|+-...-..+.+-+|..++..+.++++.+-..+ ...+..
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 4679999999999999998752 2 35679999999999999999999999999999999764333 333211
Q ss_pred --HHHH--HhhccCeEEEEEEEeecCC
Q psy16696 189 --AINN--ASEAWGITCLRYEIRDIKL 211 (296)
Q Consensus 189 --~l~~--~l~~~Gi~i~~v~I~~i~~ 211 (296)
.+++ .+...|+.|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 1111 1235699999999999875
No 34
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=93.96 E-value=1.8 Score=35.16 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=62.2
Q ss_pred CcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEE
Q psy16696 125 NVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCL 202 (296)
Q Consensus 125 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~ 202 (296)
+....+.+.+.|++.|....- .++ .=.+.+++.+...+++.|.++|.+ +++.+..++++.++..|..-+ .|.
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~-el~----~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~V~ 149 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLE-ELE----EKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-VVK 149 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHH-HHH----HhhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-eeE
Confidence 566778888888886542211 111 123678899999999999999986 499999999999999998755 899
Q ss_pred EEEEeecCC
Q psy16696 203 RYEIRDIKL 211 (296)
Q Consensus 203 ~v~I~~i~~ 211 (296)
+|.++++.+
T Consensus 150 dV~fT~fii 158 (159)
T COG1580 150 DVLFTNFII 158 (159)
T ss_pred EEeeehhhc
Confidence 999988643
No 35
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=93.68 E-value=0.26 Score=42.68 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=36.2
Q ss_pred cCeEEEEEEEeecCCChHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16696 197 WGITCLRYEIRDIKLPSRVNEAM-------QMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILE 257 (296)
Q Consensus 197 ~Gi~i~~v~I~~i~~p~~~~~ai-------~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~e 257 (296)
..+.|.++.+.+ .+-+.+.+.+ .....++-++++.+..++++++..+..|+++++..++.
T Consensus 141 ~~v~i~~i~~p~-~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~ 207 (242)
T cd03405 141 VDVRIKRIDLPE-EVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIR 207 (242)
T ss_pred EEEEEEeccCCH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777653 2333332222 22234445566667778888888888888888888833
No 36
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=92.93 E-value=0.24 Score=43.62 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=11.6
Q ss_pred HhhHHHHHHHHHhhccchhhh
Q psy16696 273 LESEGIRAADINVAEGKRQAK 293 (296)
Q Consensus 273 ~~Aea~~~~~~~~Aeaea~a~ 293 (296)
..|++++++.++.|+|++++.
T Consensus 208 ~~A~~ea~~~~~~A~a~~~~~ 228 (266)
T cd03404 208 PKARGEAARIIQEAEAYKEEV 228 (266)
T ss_pred HHhHhHHHHHHHHHHHHHHhH
Confidence 445555555555555555544
No 37
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=92.93 E-value=3 Score=31.35 Aligned_cols=47 Identities=21% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy16696 216 NEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYL 262 (296)
Q Consensus 216 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~ 262 (296)
.+.+.....|+...+..+.+|+.++...+..|+.++...+-+++.+.
T Consensus 6 ~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA 52 (108)
T COG2811 6 SEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEA 52 (108)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666788888888888888888888888888877775655554
No 38
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.56 E-value=2.1 Score=36.37 Aligned_cols=93 Identities=10% Similarity=0.195 Sum_probs=60.6
Q ss_pred eccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhh-ccCe
Q psy16696 121 ITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASE-AWGI 199 (296)
Q Consensus 121 ~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~-~~Gi 199 (296)
..-||..|.....+..|- ....+.+....+..+.+.-++.+..+-++-...+++.+-+.|++.+.+. -|+ .--+
T Consensus 139 vam~gievkakaritvra--ni~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~gtaf 213 (328)
T COG4864 139 VAMNGIEVKAKARITVRA--NIERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDSGTAF 213 (328)
T ss_pred eeccceEEEEEEEEEehh--hHHHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCCCcee
Confidence 345666655554444432 2333445455666777777777777777777888999999888877542 232 2357
Q ss_pred EEEEEEEeecCCChHHHHH
Q psy16696 200 TCLRYEIRDIKLPSRVNEA 218 (296)
Q Consensus 200 ~i~~v~I~~i~~p~~~~~a 218 (296)
+|.++.|-|++....+-.-
T Consensus 214 eilsidiadvdigkniga~ 232 (328)
T COG4864 214 EILSIDIADVDIGKNIGAK 232 (328)
T ss_pred EEEEeeeeccccccccccc
Confidence 8999999999887765443
No 39
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=91.51 E-value=4.2 Score=29.72 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q psy16696 157 QLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCLRYEIRDI 209 (296)
Q Consensus 157 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i 209 (296)
+.+++.+...++.++.+++.+ ++..+.+++++.+++.+.+- .|.+|.++++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 578888899999999999984 59999999999999998543 4888888775
No 40
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=90.36 E-value=1.3 Score=38.92 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=41.5
Q ss_pred hccCeEEEEEEEeecCCChHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696 195 EAWGITCLRYEIRDIKLPSRVNEAMQMQV-------EAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKY 261 (296)
Q Consensus 195 ~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~-------~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~ 261 (296)
.=..+.|.++.+-+ .+-+.+.+.+..++ .|+.++...+.+|+++++..+.+|++.++..+++|+++
T Consensus 136 ~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~ 208 (261)
T TIGR01933 136 TVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGD 208 (261)
T ss_pred EEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33457888888664 34444554443332 33334455566788888888889998888888554443
No 41
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=89.68 E-value=1.5 Score=39.84 Aligned_cols=79 Identities=10% Similarity=0.167 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhc-cCeEEEEEEEeecCCChHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy16696 180 ESLNESIVHAINNASEA-WGITCLRYEIRDIKLPSRVNEAMQM-------QVEAERKKRAAILESEGIRAADINVAEGKR 251 (296)
Q Consensus 180 ~~i~~~v~~~l~~~l~~-~Gi~i~~v~I~~i~~p~~~~~ai~~-------~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a 251 (296)
..+.+.+.+.+...-=. -.+.|.++.+-+ .+-+.+.+.+.. +..++-++.+....++++++..+..|++++
T Consensus 178 ~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~-~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a 256 (317)
T TIGR01932 178 REISQIANSQLKDIGIEVVDVRIKKINYSD-ELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYR 256 (317)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666553222 356777777653 444554433322 222333444555556666666677777777
Q ss_pred HHHHHHHH
Q psy16696 252 QAKILEAA 259 (296)
Q Consensus 252 ~~~~~ea~ 259 (296)
++.+++|+
T Consensus 257 ~a~~~~Ae 264 (317)
T TIGR01932 257 TARIIKGE 264 (317)
T ss_pred HHHHHHhh
Confidence 66664433
No 42
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=89.26 E-value=6 Score=31.40 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeec
Q psy16696 157 QLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCLRYEIRDI 209 (296)
Q Consensus 157 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i 209 (296)
+.+++.+-..+++.+.+++.+ +++.+.+++.+.++..+.+ | .|.+|.++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 367788888999999999984 5999999999999988876 4 6888888876
No 43
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=88.94 E-value=1.8 Score=39.65 Aligned_cols=68 Identities=18% Similarity=0.280 Sum_probs=44.0
Q ss_pred EEEeecCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16696 204 YEIRDIKLPS-RVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAAD 282 (296)
Q Consensus 204 v~I~~i~~p~-~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~ 282 (296)
+.|.++.+.+ .+-..+.+.+.. ..+|+.++.+...+|++++++.. +.++|+++..
T Consensus 203 I~V~~V~i~~i~~P~~v~~ai~~-------~~~Aere~~a~~~~aege~~a~~-----------------~~a~A~~e~~ 258 (334)
T PRK11029 203 IEVVDVRIKQINLPTEVSDAIYN-------RMRAEREAVARRHRSQGQEEAEK-----------------LRATADYEVT 258 (334)
T ss_pred cEEEEEEEEecCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhHHH
Confidence 6666666533 344445433332 23456666667777777777766 7788888888
Q ss_pred HHhhccchhhhhh
Q psy16696 283 INVAEGKRQAKIL 295 (296)
Q Consensus 283 ~~~Aeaea~a~~~ 295 (296)
++.|+|++++..+
T Consensus 259 ~~~AeA~~~a~i~ 271 (334)
T PRK11029 259 RTLAEAERQGRIM 271 (334)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876544
No 44
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=88.17 E-value=7.2 Score=34.79 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhccCeEE--EEEEEeecCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy16696 184 ESIVHAINNASEAWGITC--LRYEIRDIKL-PSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAK 260 (296)
Q Consensus 184 ~~v~~~l~~~l~~~Gi~i--~~v~I~~i~~-p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~ 260 (296)
+.+...+.+.+... +.- ..+.|.++.+ ..++-+.+.+.+.-....+.++.-|.......+.+|++++.+.+.+|++
T Consensus 124 d~I~~~I~~~l~e~-l~~y~~GI~I~dV~I~~id~P~~V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~ 202 (280)
T cd03406 124 DQIDENLKLALQKD-LTRMAPGLEIQAVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEK 202 (280)
T ss_pred HHHHHHHHHHHHHH-HhccCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHH
Confidence 35666666666652 121 2788888887 4456666665432111111122224444448999999999999999999
Q ss_pred HH-HHHHHHHHHHHhhHHHHHHH
Q psy16696 261 YL-CKLLIKRAAILESEGIRAAD 282 (296)
Q Consensus 261 ~~-~~~~~~~~~~~~Aea~~~~~ 282 (296)
+. .+.++.+..+.+-+.++.-.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~ 225 (280)
T cd03406 203 VAQVAKILFGQKVMEKETEKRIS 225 (280)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 98 77777777766666555443
No 45
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=86.74 E-value=7.9 Score=32.05 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=59.2
Q ss_pred cCCcceeccCCc--EEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHH
Q psy16696 115 VPQQSAITSDNV--TLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINN 192 (296)
Q Consensus 115 ~~~~~~~T~D~~--~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~ 192 (296)
++...+.++|.. ..-+..++.|...|+... -. -..-...++..+..++++.+.+|+. ++..+..++++.+|.
T Consensus 88 l~ef~vNLaD~~~~r~~vki~l~~e~~d~~l~-~E----L~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~ 161 (181)
T PRK06654 88 IGEIRGNTADTPPKTFVVKLALGYAENNKNIL-NE----LGRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINS 161 (181)
T ss_pred cCceEEEcCCCCCceEEEEEEEEEEcCCHHHH-HH----HHhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHH
Confidence 444445566653 334566666665444211 00 0112356788889999999999998 889999999999998
Q ss_pred HhhccCeEEEEEEEeecC
Q psy16696 193 ASEAWGITCLRYEIRDIK 210 (296)
Q Consensus 193 ~l~~~Gi~i~~v~I~~i~ 210 (296)
.|.+- .|.+|.++++.
T Consensus 162 iL~~G--kV~~VYFTeFv 177 (181)
T PRK06654 162 ILRNG--EIKDIAFTQID 177 (181)
T ss_pred hcCCC--ceEEEEEEEEE
Confidence 88763 47788777654
No 46
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=85.08 E-value=12 Score=28.48 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy16696 218 AMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIK 268 (296)
Q Consensus 218 ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~ 268 (296)
.|...+.|++++..-+..|+.++...+.+|+.+++..+-+-...++.+.++
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~ 57 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKE 57 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778899999999999999999999999999988774433333444433
No 47
>KOG2668|consensus
Probab=84.07 E-value=8.7 Score=34.97 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=8.1
Q ss_pred cCccEEEeCcceeEE
Q psy16696 89 EPGLNILIPIIDKIK 103 (296)
Q Consensus 89 ~pG~~~~~P~~~~v~ 103 (296)
..|+.|..|-+-+|.
T Consensus 55 segvP~~vtgVaqvk 69 (428)
T KOG2668|consen 55 SEGVPFVVTGVAQVK 69 (428)
T ss_pred ccCCceEeeeeEEEe
Confidence 456666666544443
No 48
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=82.65 E-value=6.5 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16696 218 AMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKIL 256 (296)
Q Consensus 218 ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ 256 (296)
.|...+.|+.++..-+.+|+.++...+.+|+.+++..+-
T Consensus 5 ~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~ 43 (105)
T PF03179_consen 5 GIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIE 43 (105)
T ss_dssp -SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888888888888888877663
No 49
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=79.00 E-value=5.3 Score=37.75 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=68.6
Q ss_pred cccCCCHHHHHHHH--HHHHHHHHHccCCHHHHHHh--HHHH----HHHHHHHHHHHhhccCeEE--EEEEEeecCCChH
Q psy16696 145 SYGVEDPEFAITQL--AQTTMRSELGKISLDKVFRE--RESL----NESIVHAINNASEAWGITC--LRYEIRDIKLPSR 214 (296)
Q Consensus 145 ~~~~~~~~~~l~~~--~~~~lr~vi~~~~~~el~~~--R~~i----~~~v~~~l~~~l~~~Gi~i--~~v~I~~i~~p~~ 214 (296)
.|.+.|+...+..+ .+..|+.++- ..+.+++.. -+++ ...|...+.+.+... +.= .-|.|.+|.+-+-
T Consensus 164 qYrI~Dp~~~lf~v~~~~~~L~~~~~-SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~-l~~y~~GI~V~~V~I~di 241 (419)
T PRK10930 164 QYRVTDPEKYLFSVTSPDDSLRQATD-SALRGVIGKYTMDRILTEGRTVIRSDTQRELEET-IRPYDMGITLLDVNFQAA 241 (419)
T ss_pred EEEECCHHHHHHhccCHHHHHHHHHH-HHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHH-HhhcCCCeEEEEEEEeec
Confidence 36777888776543 2344444432 234444433 2332 234555666666552 111 2477788876432
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhh
Q psy16696 215 -VNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAADINVAEGKRQAK 293 (296)
Q Consensus 215 -~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~~~~Aeaea~a~ 293 (296)
.=+.+. .| =.....|+.+.+..+.+|++.+...+ -.|++++.+.+..|+|.+++.
T Consensus 242 ~pP~eV~---~A----f~~v~~Are~~~~~i~eAeayan~ii-----------------p~A~gea~~ii~~AeAyr~~~ 297 (419)
T PRK10930 242 RPPEEVK---AA----FDDAIAARENEQQYIREAEAYTNEVQ-----------------PRANGQAQRILEEARAYKAQT 297 (419)
T ss_pred CCCHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
Confidence 222232 22 11223345555667777777777666 678888888888888877765
Q ss_pred hh
Q psy16696 294 IL 295 (296)
Q Consensus 294 ~~ 295 (296)
.+
T Consensus 298 i~ 299 (419)
T PRK10930 298 IL 299 (419)
T ss_pred HH
Confidence 44
No 50
>KOG3083|consensus
Probab=77.21 E-value=2.9 Score=35.63 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=17.6
Q ss_pred HhhHHHHHHHHHhhccchhhhhh
Q psy16696 273 LESEGIRAADINVAEGKRQAKIL 295 (296)
Q Consensus 273 ~~Aea~~~~~~~~Aeaea~a~~~ 295 (296)
..|+.++.+.++.||||++++++
T Consensus 201 eKAeQqk~aavIsAEGds~aA~l 223 (271)
T KOG3083|consen 201 EKAEQQKKAAVISAEGDSKAAEL 223 (271)
T ss_pred HHHhhhhhhheeecccchHHHHH
Confidence 45777777888888888888764
No 51
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=76.89 E-value=9 Score=30.27 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhcc-C-eEEEEEEEeec
Q psy16696 157 QLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAW-G-ITCLRYEIRDI 209 (296)
Q Consensus 157 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~-G-i~i~~v~I~~i 209 (296)
+.+++.+-.++++.+.+++.+ +|+.+.+++.+.++..+.+- | -.|++|.++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 678888999999999999974 59999999999999999753 2 25888888876
No 52
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=75.05 E-value=36 Score=28.79 Aligned_cols=82 Identities=10% Similarity=0.166 Sum_probs=53.8
Q ss_pred ceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh--HHHHHHHHHHHHHHHhhc
Q psy16696 119 SAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE--RESLNESIVHAINNASEA 196 (296)
Q Consensus 119 ~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~v~~~l~~~l~~ 196 (296)
.+.|+||..+.+-+.+.-.-. -.......|+......+...+++++++++... ...+..++....+.-.--
T Consensus 101 dvkTkDGy~lRv~~i~~T~~r-------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~IyPl 173 (203)
T PRK04057 101 DVTTKDGYKVRVKPVALTTKR-------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIYPL 173 (203)
T ss_pred EEEcCCCCEEEEEEEEEEchh-------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhccCc
Confidence 467999988887766543211 12345667899999999999999999999865 455555555555544322
Q ss_pred cCeEEEEEEEe
Q psy16696 197 WGITCLRYEIR 207 (296)
Q Consensus 197 ~Gi~i~~v~I~ 207 (296)
--++|.-+.+.
T Consensus 174 r~veIrKvkvl 184 (203)
T PRK04057 174 RRVEIRKSKVL 184 (203)
T ss_pred ceEEEEEEEEE
Confidence 24555555543
No 53
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=73.31 E-value=36 Score=25.40 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 217 EAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 217 ~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
+.+.....++.+.+..+..|+.++...+..|+.+++...
T Consensus 3 e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~ 41 (103)
T PRK08404 3 DVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIE 41 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677777777777777777777777776666554
No 54
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=73.02 E-value=7.4 Score=34.62 Aligned_cols=89 Identities=26% Similarity=0.236 Sum_probs=47.8
Q ss_pred HHHHHHHhhccCeEEEEEEEeecCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy16696 187 VHAINNASEAWGITCLRYEIRDIKLPS-RVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKL 265 (296)
Q Consensus 187 ~~~l~~~l~~~Gi~i~~v~I~~i~~p~-~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~ 265 (296)
...+.+.++. +..=..+.|.|+.+-. +.-..+.. +......|+.+....+.+|+++++..++.++++
T Consensus 143 ~~~i~~~l~~-~~~~~Gi~V~~V~i~~i~~p~ev~~-------a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~---- 210 (291)
T COG0330 143 NAKIREILDE-AADPWGIKVVDVEIKDIDPPEEVQA-------AMEKQMAAERDKRAEILEAEGEAQAAILRAEGE---- 210 (291)
T ss_pred HHHHHHHHHH-hhhhcCcEEEEEEEeecCCCHHHHH-------HHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhh----
Confidence 3333333333 3344456666666533 23333433 233334466666678888888887777554433
Q ss_pred HHHHHHHHhhHHHHHH-HHHhhccc
Q psy16696 266 LIKRAAILESEGIRAA-DINVAEGK 289 (296)
Q Consensus 266 ~~~~~~~~~Aea~~~~-~~~~Aeae 289 (296)
.++..+.++|.+++ .+.+|+||
T Consensus 211 --~~a~~i~aea~~~a~~~~~a~~~ 233 (291)
T COG0330 211 --AEAAIILAEAEAEAEVIARAEAD 233 (291)
T ss_pred --HHHHHHHHHHHHHHHHHHhhccH
Confidence 44445566666555 45555555
No 55
>PTZ00491 major vault protein; Provisional
Probab=72.65 E-value=25 Score=35.99 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=26.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhhccc
Q psy16696 242 ADINVAEGKRQAKILEAAKYL-CKLLIKRAAILESEGIRAADINVAEGK 289 (296)
Q Consensus 242 ~~~~~A~a~a~~~~~ea~~~~-~~~~~~~~~~~~Aea~~~~~~~~Aeae 289 (296)
+.+.+|++.++...+|++++. .++.+.++..+.++++.+....+-+.|
T Consensus 716 ~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~~~~~~~~~e 764 (850)
T PTZ00491 716 QSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELE 764 (850)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHHHHHHHHHHH
Confidence 344555556666666666665 555555555566655555555444443
No 56
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=72.64 E-value=34 Score=27.73 Aligned_cols=53 Identities=6% Similarity=0.010 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccC--eEEEEEEEeec
Q psy16696 157 QLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWG--ITCLRYEIRDI 209 (296)
Q Consensus 157 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~G--i~i~~v~I~~i 209 (296)
+.+++.+-.++++.+.++|.+ ++..+.+++++.++..+..-+ -.|.+|.++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 467788888899999999974 599999999999999886532 46888888876
No 57
>KOG3090|consensus
Probab=71.64 E-value=5.9 Score=33.82 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhccCeEEEEEEEeecCCCh-HHHHHHHHHHHH
Q psy16696 184 ESIVHAINNASEAWGITCLRYEIRDIKLPS-RVNEAMQMQVEA 225 (296)
Q Consensus 184 ~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~-~~~~ai~~~~~A 225 (296)
+.+...+++.|.+.--. .++.+.|+++.. .+-.-+....+|
T Consensus 155 e~VSrliRk~L~eRA~~-Fni~LDDVSiT~l~F~~efTaAiEa 196 (290)
T KOG3090|consen 155 EQVSRLIRKILTERAAD-FNIALDDVSITELTFGKEFTAAIEA 196 (290)
T ss_pred HHHHHHHHHHHHHHHhc-cceEeecceeeeeecCHHHHHHHHH
Confidence 34555566666554332 355567777754 333444433333
No 58
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=71.27 E-value=12 Score=31.13 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHH-hhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy16696 182 LNESIVHAINNA-SEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQA 253 (296)
Q Consensus 182 i~~~v~~~l~~~-l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~ 253 (296)
+.+.+.+.+... +.=..+.|.++.+-+ .+-..+.+.....+.+++ ++..+.+|+++++..+.+|+++++.
T Consensus 125 i~~~l~~~l~~~Gi~i~~v~i~~i~~p~-~~~~ai~~k~~a~q~~~~-a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 125 IREALTERAKDFGIILDDVSITHLTFSK-EFTKAVEAKQVAQQEAER-AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHhCCeEEEEEEEEeccCCH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 444444455442 333467888888753 566777665555555444 5556777888888888888888753
No 59
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.72 E-value=42 Score=27.43 Aligned_cols=54 Identities=9% Similarity=0.201 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhcc-C-eEEEEEEEeec
Q psy16696 156 TQLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAW-G-ITCLRYEIRDI 209 (296)
Q Consensus 156 ~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~-G-i~i~~v~I~~i 209 (296)
.+.+++.+-.++++.+.+++.+ +++.+.+++...++..++.. | -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4568899999999999999974 59999999999888888653 3 25888888876
No 60
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.57 E-value=15 Score=30.45 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecC
Q psy16696 156 TQLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCLRYEIRDIK 210 (296)
Q Consensus 156 ~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~ 210 (296)
.+.+++.+-.++++.+.++|.+ .+..+.+++...++..+.+ | .|.+|.++++-
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~FV 180 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDFV 180 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEeee
Confidence 4568888899999999999984 5999999999999999976 3 58888888763
No 61
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.33 E-value=16 Score=29.88 Aligned_cols=53 Identities=9% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecC
Q psy16696 156 TQLAQTTMRSELGKISLDKVFR--ERESLNESIVHAINNASEAWGITCLRYEIRDIK 210 (296)
Q Consensus 156 ~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~ 210 (296)
.+.+++.+-.++++.+.++|.+ ++..+.+++.+.++..+.+- .|.+|.++++-
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~FV 164 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEVV 164 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEeeE
Confidence 3567778888899999999975 59999999999999988763 48888888763
No 62
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=70.22 E-value=37 Score=24.22 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 224 EAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 224 ~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
.++.+.+..+..|+.++...+..|+.+++...
T Consensus 6 ~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~ 37 (85)
T TIGR02926 6 KAEEDAEELIEEAEEERKQRIAEAREEARELL 37 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666665555
No 63
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=65.44 E-value=30 Score=29.04 Aligned_cols=31 Identities=29% Similarity=0.204 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
|+++++.-+.+|+.+++..+..|+.+++..+
T Consensus 20 A~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~ 50 (198)
T PRK01558 20 AERLANEIILEAKEEAEEIIAKAEEEAKELK 50 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666666666655544
No 64
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=65.27 E-value=16 Score=30.83 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=30.8
Q ss_pred HHHHHHHHhhccCeEEEEEEEeecCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 186 IVHAINNASEAWGITCLRYEIRDIKLPS-RVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 186 v~~~l~~~l~~~Gi~i~~v~I~~i~~p~-~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
+.+.+.+.+... +.=..+.|.++.+.. .+-+.+.+.+.. ...|+.++++.+.+|+++++...
T Consensus 113 i~~~i~~~l~~~-l~~~Gi~v~~v~i~~i~~p~~~~~ai~~-------~~~A~~~~~a~i~~A~ge~~a~~ 175 (215)
T cd03403 113 INAELVEILDEA-TDPWGVKVERVEIKDIILPQEIQEAMAK-------QAEAEREKRAKIIEAEGERQAAI 175 (215)
T ss_pred HHHHHHHHHHHH-HhccCeEEEEEEEeeecCCHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444432 122345666665432 333333322222 23456666677777777777766
No 65
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=63.52 E-value=89 Score=26.20 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Q psy16696 234 LESEGIRAADINVAEGKRQAKILEA 258 (296)
Q Consensus 234 ~~Ae~~~~~~~~~A~a~a~~~~~ea 258 (296)
.+|+.+++..+..|+.+++..+.+|
T Consensus 18 eeA~~eA~~Ii~eA~~eAe~Ii~eA 42 (198)
T PRK01558 18 EEAERLANEIILEAKEEAEEIIAKA 42 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555333
No 66
>KOG2962|consensus
Probab=58.40 E-value=90 Score=26.94 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhcc-CeEEEEEEEeecCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy16696 181 SLNESIVHAINNASEAW-GITCLRYEIRDIKLP-SRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILEA 258 (296)
Q Consensus 181 ~i~~~v~~~l~~~l~~~-Gi~i~~v~I~~i~~p-~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea 258 (296)
++-+.+-+.+...|... -----.+.|+.++.. |.+-+++.+--.-.........-|...+.....+|+.++..+++||
T Consensus 139 dlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEA 218 (322)
T KOG2962|consen 139 DLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEA 218 (322)
T ss_pred HHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555432 233345667777763 5577888876666666666777788888888899999999999999
Q ss_pred HHHH-HHHHHHHHHHHhhHHHHHH
Q psy16696 259 AKYL-CKLLIKRAAILESEGIRAA 281 (296)
Q Consensus 259 ~~~~-~~~~~~~~~~~~Aea~~~~ 281 (296)
|+.. .+++-.++.+.+-+.++.-
T Consensus 219 EK~AqVa~I~~qqkl~EKetekr~ 242 (322)
T KOG2962|consen 219 EKNAQVAKILMQQKLMEKETEKRI 242 (322)
T ss_pred HHHhHHHHHHHHHHhhhhHHHHHH
Confidence 9888 6666666666555554443
No 67
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=57.56 E-value=91 Score=28.21 Aligned_cols=18 Identities=28% Similarity=0.196 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhccchhhh
Q psy16696 276 EGIRAADINVAEGKRQAK 293 (296)
Q Consensus 276 ea~~~~~~~~Aeaea~a~ 293 (296)
.++......++++|++++
T Consensus 186 KAe~a~~k~kaEaEAkaa 203 (387)
T COG3064 186 KAEAAAAKKKAEAEAKAA 203 (387)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333445555555543
No 68
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.36 E-value=67 Score=31.41 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=19.8
Q ss_pred hhccCCeeEecCCcchHHHHHHHHHHhhhcCeeeEEecCccEEEeCc
Q psy16696 52 LAKTNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPI 98 (296)
Q Consensus 52 l~~~~~~vi~p~~~~~~~~~v~~~~vv~r~G~~~~~~~pG~~~~~P~ 98 (296)
.+.++..+|..++++.-..--+...-+.++|. ...-|.+|..-|.
T Consensus 37 ~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg--~~v~Pi~q~~~r~ 81 (548)
T COG2268 37 IARPNEALIRTGSKLGSKDEAGGGQKVVRGGG--AIVMPIFQTIERM 81 (548)
T ss_pred ecCCCceEEEeccccCCcccccCCccEEecCc--eEEecceeeeEEe
Confidence 34555556666654321100011112334443 2345777766654
No 69
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=55.35 E-value=1.3e+02 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
|+.+++.-+..|+.+++..+.+|+.+++..+
T Consensus 25 A~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii 55 (207)
T PRK01005 25 AEEEAGAIVHNAKEQAKRIIAEAQEEAEKII 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666666666655555
No 70
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=53.54 E-value=1.2e+02 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQ 252 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~ 252 (296)
|+.+.+.-+.+|+.+++..+..|..+++
T Consensus 15 A~~ea~~il~~A~~~a~~i~~~a~~~a~ 42 (198)
T PRK03963 15 AEQKIEYILEEAQKEAEKIKEEARKRAE 42 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554444443
No 71
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=52.89 E-value=1.4e+02 Score=25.19 Aligned_cols=9 Identities=0% Similarity=0.028 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q psy16696 215 VNEAMQMQV 223 (296)
Q Consensus 215 ~~~ai~~~~ 223 (296)
+...++.|.
T Consensus 73 i~~~L~~R~ 81 (205)
T PRK06231 73 TQRFLNKRK 81 (205)
T ss_pred HHHHHHHHH
Confidence 444444433
No 72
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=51.89 E-value=1.3e+02 Score=24.45 Aligned_cols=9 Identities=22% Similarity=0.685 Sum_probs=4.8
Q ss_pred CHHHHHHhH
Q psy16696 171 SLDKVFRER 179 (296)
Q Consensus 171 ~~~el~~~R 179 (296)
++..++.+|
T Consensus 46 Pi~~~l~~R 54 (167)
T PRK08475 46 PLKNFYKSR 54 (167)
T ss_pred HHHHHHHHH
Confidence 455555554
No 73
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=51.77 E-value=1.3e+02 Score=24.72 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhhHHHH
Q psy16696 236 SEGIRAADINVAEGKRQA 253 (296)
Q Consensus 236 Ae~~~~~~~~~A~a~a~~ 253 (296)
|+.+++..+..|+.+++.
T Consensus 25 a~~~~~~i~~ea~~~a~~ 42 (188)
T PRK02292 25 ADEEAEEIIAEAEADAEE 42 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444333
No 74
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=51.24 E-value=75 Score=26.67 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=47.8
Q ss_pred ceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhccC
Q psy16696 119 SAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWG 198 (296)
Q Consensus 119 ~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~~G 198 (296)
++.|+||..+.|-....=+=. -...-...|+..+...+.+.++..+++++...- +...+..++...+...
T Consensus 107 dvkT~DGy~lRvf~i~fT~~r-------a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~l--i~~~i~~eI~k~~k~I- 176 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKKR-------AKSSQIKAIRKKMVEIITEEASELDLKELVKKL--IPGSIGKEIEKACKKI- 176 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-----------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHH--CTTHHHHHHHHHHCTT-
T ss_pred EEEcCCCcEEEEEEEEEEeec-------ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHH--ccchHHHHHHHHhccc-
Confidence 466888877766544322110 112345678999999999999999999998652 3334444444444442
Q ss_pred eEEEEEEEeec
Q psy16696 199 ITCLRYEIRDI 209 (296)
Q Consensus 199 i~i~~v~I~~i 209 (296)
..+.+|.|+.+
T Consensus 177 yPl~~v~IrKv 187 (194)
T PF01015_consen 177 YPLRNVEIRKV 187 (194)
T ss_dssp --EEEEEEEEE
T ss_pred cccceEEEEEE
Confidence 23445555443
No 75
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=50.20 E-value=49 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 233 ILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 233 ~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
+..|+.++...+..|+..+...+
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~l 31 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRL 31 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444
No 76
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=49.79 E-value=20 Score=27.70 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=30.5
Q ss_pred hhcCeeeEEecCccEEEeCc--ceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEE
Q psy16696 79 ERMGKYHRILEPGLNILIPI--IDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLK 137 (296)
Q Consensus 79 ~r~G~~~~~~~pG~~~~~P~--~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yr 137 (296)
.|+|-+-.++..|-|+-+|| +.++..-...+..-+-+.+..+.-.||-....-+-+.|-
T Consensus 13 ~RlGpvlE~~~~G~Y~WvPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~~~~~iP~rYp 73 (123)
T PF07024_consen 13 DRLGPVLEVITNGRYYWVPFSRIASLEFEPPASLRDLVWRPAEITLRDGGEGEGFIPARYP 73 (123)
T ss_dssp TTTTTEEEEETTS-EEEEEGGGEEEEEE----SSGGGTEEEEEEEETTTEEEEEEEE-B-T
T ss_pred cCCceeEEEEECCEEEEEEHHHccceecCCCCCHHHhcccceEEEEeCCCeEEEEEecccC
Confidence 36888889888899999998 333332211111112222334555677666665555553
No 77
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=47.73 E-value=2e+02 Score=29.04 Aligned_cols=42 Identities=5% Similarity=0.048 Sum_probs=25.8
Q ss_pred HHHHHH-HhhccCeEEEEEE----EeecCCChHHHHHHHHHHHHHHH
Q psy16696 187 VHAINN-ASEAWGITCLRYE----IRDIKLPSRVNEAMQMQVEAERK 228 (296)
Q Consensus 187 ~~~l~~-~l~~~Gi~i~~v~----I~~i~~p~~~~~ai~~~~~Ae~~ 228 (296)
.+.|++ .|...||.|++-. +-....|.++....+++...+.+
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQ 566 (651)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHH
Confidence 455676 5888999998852 22344556666666655444433
No 78
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=47.65 E-value=1.4e+02 Score=24.70 Aligned_cols=31 Identities=19% Similarity=-0.033 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
|+++++.-+.+|+.+++..+..|+.+++...
T Consensus 14 a~~~a~~I~~eA~~~aeei~~ea~~~a~~~~ 44 (185)
T PRK01194 14 REEKKKEINDEYSKRIEKLEKECDSKIQSIK 44 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555554444
No 79
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=46.65 E-value=1.2e+02 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.204 Sum_probs=7.2
Q ss_pred HHHHHHHhhhHHHHHH
Q psy16696 240 RAADINVAEGKRQAKI 255 (296)
Q Consensus 240 ~~~~~~~A~a~a~~~~ 255 (296)
.+..+..|+.++...+
T Consensus 41 ~~eii~eA~~eA~~il 56 (103)
T PRK08404 41 EEEIIKKAEEEAQKLI 56 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 80
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=46.54 E-value=51 Score=25.12 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696 229 KRAAILESEGIRAADINVAEGKRQAKILEAAKY 261 (296)
Q Consensus 229 ~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~ 261 (296)
.-..+..||.++...+..|+..+..++-+|..+
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~E 39 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEE 39 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777666666444433
No 81
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=44.55 E-value=1.5e+02 Score=23.01 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy16696 215 VNEAMQM 221 (296)
Q Consensus 215 ~~~ai~~ 221 (296)
+...|+.
T Consensus 30 i~~~l~~ 36 (140)
T PRK07353 30 VGKVVEE 36 (140)
T ss_pred HHHHHHH
Confidence 4444433
No 82
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=44.48 E-value=1.7e+02 Score=23.67 Aligned_cols=15 Identities=27% Similarity=0.229 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhhH
Q psy16696 236 SEGIRAADINVAEGK 250 (296)
Q Consensus 236 Ae~~~~~~~~~A~a~ 250 (296)
|+.++...+..|+.+
T Consensus 74 A~~ea~~Ii~~A~~~ 88 (167)
T PRK14475 74 AERQAAAMLAAAKAD 88 (167)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 83
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=43.45 E-value=1.4e+02 Score=22.50 Aligned_cols=61 Identities=18% Similarity=0.050 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy16696 222 QVEAERKKRAAILESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAAD 282 (296)
Q Consensus 222 ~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~~~~~~~~~~~~~~Aea~~~~~ 282 (296)
...|...++..+..|+.++...+..|+.+++....+--.....+....+..+.++++++..
T Consensus 23 IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~ 83 (108)
T COG2811 23 IEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEAS 83 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777788888888888877776665433333333333333334444444333
No 84
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=42.75 E-value=2.2e+02 Score=24.60 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=8.2
Q ss_pred CHHHHHHhH-HHHHHHHH
Q psy16696 171 SLDKVFRER-ESLNESIV 187 (296)
Q Consensus 171 ~~~el~~~R-~~i~~~v~ 187 (296)
++..++.+| ..|...+.
T Consensus 29 Pi~~~l~~R~~~I~~~l~ 46 (246)
T TIGR03321 29 PILDAMDAREKKIAGELA 46 (246)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566554 34444443
No 85
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=42.69 E-value=1.5e+02 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.206 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQ 252 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~ 252 (296)
|+.+.+.-+.+|+.+.+..+..++.+++
T Consensus 6 A~~ka~~I~~eA~~e~~~i~~~~~~~~~ 33 (198)
T PF01991_consen 6 AQEKAEEIIAEAQEEAEKILEEAEEEAE 33 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 86
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=42.17 E-value=3.2e+02 Score=26.15 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=4.5
Q ss_pred CHHHHHHhH
Q psy16696 171 SLDKVFRER 179 (296)
Q Consensus 171 ~~~el~~~R 179 (296)
++..++.+|
T Consensus 25 Pi~~~l~~R 33 (445)
T PRK13428 25 PVRRLMAAR 33 (445)
T ss_pred HHHHHHHHH
Confidence 345555553
No 87
>KOG2304|consensus
Probab=42.16 E-value=41 Score=29.16 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=9.4
Q ss_pred EecCccEEEeCc
Q psy16696 87 ILEPGLNILIPI 98 (296)
Q Consensus 87 ~~~pG~~~~~P~ 98 (296)
..-.|+||++|.
T Consensus 148 srf~GlHFfNPv 159 (298)
T KOG2304|consen 148 SRFAGLHFFNPV 159 (298)
T ss_pred hhhceeeccCCc
Confidence 345699999996
No 88
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.14 E-value=2.1e+02 Score=24.12 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=4.7
Q ss_pred CHHHHHHhH
Q psy16696 171 SLDKVFRER 179 (296)
Q Consensus 171 ~~~el~~~R 179 (296)
++..++.+|
T Consensus 72 Pi~~~L~~R 80 (205)
T PRK06231 72 PTQRFLNKR 80 (205)
T ss_pred HHHHHHHHH
Confidence 455555554
No 89
>PRK13665 hypothetical protein; Provisional
Probab=40.05 E-value=98 Score=27.37 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=30.6
Q ss_pred HHHHhhccCeEE-EEEEEeecCCCh-HHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy16696 190 INNASEAWGITC-LRYEIRDIKLPS-RVNEAMQMQVEAER-KKRAAILESEGI 239 (296)
Q Consensus 190 l~~~l~~~Gi~i-~~v~I~~i~~p~-~~~~ai~~~~~Ae~-~~~a~~~~Ae~~ 239 (296)
+.+..-..|+.- +.+.|-+|+..+ ++-+.+..+.++.| +++..+.+|++|
T Consensus 199 ISk~VL~kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAE 251 (316)
T PRK13665 199 ISKTVLSKGLDAGTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAE 251 (316)
T ss_pred HHHHHHhccCCcCceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHH
Confidence 344555568775 677788888744 67788887776654 334444444333
No 90
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=39.99 E-value=2.1e+02 Score=23.52 Aligned_cols=24 Identities=13% Similarity=0.100 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q psy16696 230 RAAILESEGIRAADINVAEGKRQA 253 (296)
Q Consensus 230 ~a~~~~Ae~~~~~~~~~A~a~a~~ 253 (296)
+..+..++.++...+..|+.+++.
T Consensus 89 e~~L~~Ar~EA~~ii~~A~~ea~~ 112 (181)
T PRK13454 89 NKALADARAEAQRIVAETRAEIQA 112 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555444444444433
No 91
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=39.86 E-value=2.1e+02 Score=23.47 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhh
Q psy16696 236 SEGIRAADINVAE 248 (296)
Q Consensus 236 Ae~~~~~~~~~A~ 248 (296)
|+.+++..+..|+
T Consensus 91 A~~ea~~Ii~~A~ 103 (184)
T PRK13455 91 VQEQADRIVAAAK 103 (184)
T ss_pred HHHHHHHHHHHHH
Confidence 3333343333333
No 92
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=39.73 E-value=2.2e+02 Score=23.58 Aligned_cols=24 Identities=8% Similarity=-0.109 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696 236 SEGIRAADINVAEGKRQAKILEAA 259 (296)
Q Consensus 236 Ae~~~~~~~~~A~a~a~~~~~ea~ 259 (296)
|+.+++..+..|+.+++..+.+++
T Consensus 14 a~~~a~~I~~eA~~~aeei~~ea~ 37 (185)
T PRK01194 14 REEKKKEINDEYSKRIEKLEKECD 37 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555544443333
No 93
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=39.49 E-value=2e+02 Score=22.98 Aligned_cols=8 Identities=63% Similarity=0.692 Sum_probs=3.6
Q ss_pred HHHHHHhH
Q psy16696 172 LDKVFRER 179 (296)
Q Consensus 172 ~~el~~~R 179 (296)
+..++..|
T Consensus 47 i~~~l~~R 54 (156)
T CHL00118 47 LLKVLDER 54 (156)
T ss_pred HHHHHHHH
Confidence 44444443
No 94
>KOG1772|consensus
Probab=38.93 E-value=1.7e+02 Score=22.00 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy16696 218 AMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKILE 257 (296)
Q Consensus 218 ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~e 257 (296)
-|....+||.++...+.+|+..+.....+|+-+++..+.+
T Consensus 7 GIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~ 46 (108)
T KOG1772|consen 7 GIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEE 46 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666778888888888888888888888888888776633
No 95
>PRK09098 type III secretion system protein HrpB; Validated
Probab=38.15 E-value=1.1e+02 Score=26.47 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy16696 228 KKRAAILESEGIRAADINVAEGKRQAKILEAAK 260 (296)
Q Consensus 228 ~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~ 260 (296)
+++.-+.+|+.+++..+..|+.+++..+.+|+.
T Consensus 40 ~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~ 72 (233)
T PRK09098 40 ERDAVLAAARARAERIVAEARAQAEAILEAARR 72 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777777777776644443
No 96
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=36.21 E-value=2.3e+02 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhhHHH
Q psy16696 236 SEGIRAADINVAEGKRQ 252 (296)
Q Consensus 236 Ae~~~~~~~~~A~a~a~ 252 (296)
|+.+++..+..|+..++
T Consensus 68 Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 68 LETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444333
No 97
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=36.06 E-value=98 Score=24.37 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=33.6
Q ss_pred EEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHhhc-cCeEEE
Q psy16696 130 IDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEA-WGITCL 202 (296)
Q Consensus 130 v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~l~~-~Gi~i~ 202 (296)
+.+.|.||+.+|.-.+-++ +.. -..++++.++.++.-+.++..+..-.=-+.... -||.|.
T Consensus 93 tTG~v~WR~rpPSv~vrgv---eaV---------~e~L~rmgf~rFiRTk~EinKeAiLnepe~~kGiaGiki~ 154 (170)
T COG4396 93 TTGLVKWRIRPPSVKVRGV---EAV---------LEWLSRMGFARFIRTKKEINKEAILNEPEFSKGIAGIKIV 154 (170)
T ss_pred eeeeEEEeecCCcceeccH---HHH---------HHHHHHhhHHHHHHhHHHhcHHHHhCChhhhcCCCceeee
Confidence 5678999999886555333 222 233345666777766666665443222222222 266654
No 98
>PLN03086 PRLI-interacting factor K; Provisional
Probab=36.01 E-value=1.5e+02 Score=29.31 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16696 220 QMQVEAERKKRAAILESEGIRAA 242 (296)
Q Consensus 220 ~~~~~Ae~~~~a~~~~Ae~~~~~ 242 (296)
..|..+||+.++...+.+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (567)
T PLN03086 9 REKLEREQRERKQRAKLKLERER 31 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666655555555443
No 99
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=34.94 E-value=30 Score=27.51 Aligned_cols=37 Identities=8% Similarity=0.015 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHH
Q psy16696 183 NESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQ 220 (296)
Q Consensus 183 ~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~ 220 (296)
.-++++.|.+.|...|.+|.++.-.++++|+ +...+.
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd-~a~~va 47 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFID-NTLAVA 47 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHH-HHHHHH
Confidence 3467888888899999999998876666665 444343
No 100
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=33.51 E-value=3.3e+02 Score=23.77 Aligned_cols=9 Identities=22% Similarity=0.538 Sum_probs=4.7
Q ss_pred CHHHHHHhH
Q psy16696 171 SLDKVFRER 179 (296)
Q Consensus 171 ~~~el~~~R 179 (296)
++..++.+|
T Consensus 29 Pi~~~l~eR 37 (250)
T PRK14474 29 PIIQVMKKR 37 (250)
T ss_pred HHHHHHHHH
Confidence 455555554
No 101
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=33.47 E-value=1.1e+02 Score=27.12 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=33.6
Q ss_pred HHHHhhccCeEE-EEEEEeecCCCh-HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy16696 190 INNASEAWGITC-LRYEIRDIKLPS-RVNEAMQMQVEAER-KKRAAILESEGIR 240 (296)
Q Consensus 190 l~~~l~~~Gi~i-~~v~I~~i~~p~-~~~~ai~~~~~Ae~-~~~a~~~~Ae~~~ 240 (296)
+.+..-..|+.- +.+.|.+|+..+ ++-+.+..+.++.| +++..+.+|++|.
T Consensus 194 ISk~VL~kgLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEe 247 (316)
T PF12127_consen 194 ISKTVLEKGLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEE 247 (316)
T ss_pred HHHHHHhhCCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHH
Confidence 344444559887 788899999854 78889998887755 3444444444433
No 102
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=33.04 E-value=2e+02 Score=25.10 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 228 KKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 228 ~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
+.+..+..|+.+++..+..|+.+++...
T Consensus 41 ~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~ 68 (255)
T TIGR03825 41 EFEQILEKAEAEAAQIIEQAEAQAAAIR 68 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566666666666666665544
No 103
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=32.12 E-value=3.2e+02 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696 230 RAAILESEGIRAADINVAEGKRQAKILEAA 259 (296)
Q Consensus 230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~ 259 (296)
+..+..|+.+++..+..|+.+++..+.+|+
T Consensus 19 ~eiL~eA~~eA~~Il~eAk~~Ae~Ii~eA~ 48 (207)
T PRK01005 19 EETLKPAEEEAGAIVHNAKEQAKRIIAEAQ 48 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777777766554443
No 104
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=32.08 E-value=3e+02 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQAKIL 256 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ 256 (296)
+..+++.-+..|+.+++..+..|+.+++..+-
T Consensus 28 ~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 28 AQQQAREILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666677777777777777766553
No 105
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.74 E-value=2.8e+02 Score=22.50 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q psy16696 235 ESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 235 ~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
+|+..++..+..|+.++++.+
T Consensus 96 ~a~~~~~~~~~~A~~ea~~~~ 116 (175)
T PRK14472 96 YAEKLRAEITEKAHTEAKKMI 116 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 106
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=31.28 E-value=3.2e+02 Score=23.03 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=9.1
Q ss_pred CHHHHHHhHH-HHHHHHH
Q psy16696 171 SLDKVFRERE-SLNESIV 187 (296)
Q Consensus 171 ~~~el~~~R~-~i~~~v~ 187 (296)
++..++.+|. .|...+.
T Consensus 77 pI~~vLe~R~~~I~~~L~ 94 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLD 94 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5666776643 4444443
No 107
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=30.98 E-value=2.8e+02 Score=22.32 Aligned_cols=17 Identities=6% Similarity=0.147 Sum_probs=7.8
Q ss_pred CHHHHHHhH-HHHHHHHH
Q psy16696 171 SLDKVFRER-ESLNESIV 187 (296)
Q Consensus 171 ~~~el~~~R-~~i~~~v~ 187 (296)
++..++..| +.|...+.
T Consensus 34 pi~~~le~R~~~I~~~l~ 51 (167)
T PRK14475 34 ALAGALDAYAAKIQAELD 51 (167)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555553 34444443
No 108
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=30.38 E-value=3e+02 Score=22.37 Aligned_cols=10 Identities=40% Similarity=0.654 Sum_probs=5.7
Q ss_pred CHHHHHHhHH
Q psy16696 171 SLDKVFRERE 180 (296)
Q Consensus 171 ~~~el~~~R~ 180 (296)
++.+++.+|.
T Consensus 42 pi~~~l~~R~ 51 (173)
T PRK13453 42 PLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHH
Confidence 5666666543
No 109
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=28.40 E-value=3.1e+02 Score=21.93 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=7.5
Q ss_pred CHHHHHHhH-HHHHHHH
Q psy16696 171 SLDKVFRER-ESLNESI 186 (296)
Q Consensus 171 ~~~el~~~R-~~i~~~v 186 (296)
++..++.+| ..|...+
T Consensus 32 pi~~~l~~R~~~I~~~l 48 (164)
T PRK14471 32 PILGAVKEREDSIKNAL 48 (164)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455555553 3333333
No 110
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=28.37 E-value=3.2e+02 Score=22.12 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=5.2
Q ss_pred CHHHHHHhH
Q psy16696 171 SLDKVFRER 179 (296)
Q Consensus 171 ~~~el~~~R 179 (296)
++..++.+|
T Consensus 40 pi~~~l~~R 48 (173)
T PRK13460 40 VILKALDER 48 (173)
T ss_pred HHHHHHHHH
Confidence 455666554
No 111
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=28.02 E-value=3.7e+02 Score=22.67 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q psy16696 232 AILESEGIRAADINVAEGKR 251 (296)
Q Consensus 232 ~~~~Ae~~~~~~~~~A~a~a 251 (296)
.+..|+.++...+..|+.++
T Consensus 113 ~L~~Ar~eA~~Ii~~Ar~ea 132 (204)
T PRK09174 113 ELAQARAKAHSIAQAAREAA 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 112
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=27.79 E-value=3e+02 Score=21.56 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=8.8
Q ss_pred CHHHHHHhHH-HHHHHH
Q psy16696 171 SLDKVFRERE-SLNESI 186 (296)
Q Consensus 171 ~~~el~~~R~-~i~~~v 186 (296)
++..++.+|. .|...+
T Consensus 31 Pi~~~l~~R~~~I~~~l 47 (141)
T PRK08476 31 PLLKFMDNRNASIKNDL 47 (141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 5566776654 444444
No 113
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.44 E-value=3.3e+02 Score=21.92 Aligned_cols=7 Identities=0% Similarity=0.017 Sum_probs=2.7
Q ss_pred HHHHHHh
Q psy16696 172 LDKVFRE 178 (296)
Q Consensus 172 ~~el~~~ 178 (296)
+..++..
T Consensus 29 I~~~Lee 35 (154)
T PRK06568 29 ILNSLDA 35 (154)
T ss_pred HHHHHHH
Confidence 3334433
No 114
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=27.22 E-value=3.7e+02 Score=22.48 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 233 ILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 233 ~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
..+|..+++....++...++...
T Consensus 23 ~~eA~~eae~i~~ea~~~~~~~~ 45 (194)
T COG1390 23 LEEAREEAEKIKEEAKREAEEAI 45 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 115
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=26.54 E-value=3.5e+02 Score=21.92 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=7.1
Q ss_pred cCCHHHHHHhHH
Q psy16696 169 KISLDKVFRERE 180 (296)
Q Consensus 169 ~~~~~el~~~R~ 180 (296)
--++..++.+|.
T Consensus 41 ~kpI~~~l~~R~ 52 (174)
T PRK07352 41 RGFLGKILEERR 52 (174)
T ss_pred HHHHHHHHHHHH
Confidence 335677776654
No 116
>PRK09098 type III secretion system protein HrpB; Validated
Probab=25.92 E-value=2e+02 Score=24.84 Aligned_cols=28 Identities=11% Similarity=0.136 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy16696 226 ERKKRAAILESEGIRAADINVAEGKRQA 253 (296)
Q Consensus 226 e~~~~a~~~~Ae~~~~~~~~~A~a~a~~ 253 (296)
+.+++.-+..|+.+++..+..|+.+.+.
T Consensus 49 r~~A~~Il~~A~~~A~~I~~~A~~e~e~ 76 (233)
T PRK09098 49 RARAERIVAEARAQAEAILEAARREADR 76 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555554443
No 117
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=25.83 E-value=4.2e+02 Score=22.58 Aligned_cols=84 Identities=10% Similarity=0.171 Sum_probs=53.7
Q ss_pred cceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh--HHHHHHHHHHHHHHHhh
Q psy16696 118 QSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE--RESLNESIVHAINNASE 195 (296)
Q Consensus 118 ~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~v~~~l~~~l~ 195 (296)
.++.|+||..+.|.+.+.=+=. -...-...|+......+.+-.+..++++++.. -+.+..+|.+..++..-
T Consensus 108 ~dVkTkDGy~~RV~~~~~T~~r-------a~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyP 180 (214)
T COG1890 108 VDVKTKDGYVLRVKAMAFTRRR-------AKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYP 180 (214)
T ss_pred EEEEecCCcEEEEEEEEEEehh-------cccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhccc
Confidence 3578999988887665532210 11235567899999999999999999999865 45555555554443321
Q ss_pred ccCeEEEEEEEee
Q psy16696 196 AWGITCLRYEIRD 208 (296)
Q Consensus 196 ~~Gi~i~~v~I~~ 208 (296)
=--++|.-+.+-.
T Consensus 181 Lr~veIrK~kvl~ 193 (214)
T COG1890 181 LRKVEIRKSKVLK 193 (214)
T ss_pred chheEEEeeeeec
Confidence 1256666666543
No 118
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=25.03 E-value=3.6e+02 Score=21.54 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=5.6
Q ss_pred CHHHHHHhHH
Q psy16696 171 SLDKVFRERE 180 (296)
Q Consensus 171 ~~~el~~~R~ 180 (296)
++..++..|.
T Consensus 32 pi~~~l~~R~ 41 (164)
T PRK14473 32 PVLNLLNERT 41 (164)
T ss_pred HHHHHHHHHH
Confidence 4556666543
No 119
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=24.89 E-value=74 Score=27.53 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=33.6
Q ss_pred hhcCeeeEEecCccEEEeCc--ceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEE
Q psy16696 79 ERMGKYHRILEPGLNILIPI--IDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKI 138 (296)
Q Consensus 79 ~r~G~~~~~~~pG~~~~~P~--~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI 138 (296)
.|.|-+..++..|.|..+|| |.+...-...+...+-+.+.++.-+||-.-..=.-..|.-
T Consensus 155 ~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~dg~~~~a~LparY~g 216 (273)
T COG4455 155 DRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLRDGAIASALLPARYHG 216 (273)
T ss_pred cccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEecCceeEEEeeeecCC
Confidence 46787888888888888998 3333322222444444445555556664433334444443
No 120
>KOG1029|consensus
Probab=24.88 E-value=8e+02 Score=25.50 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=23.5
Q ss_pred cccCccchhcccHhHHHHHHHHhhhccCCeeEecCC
Q psy16696 29 ETKDGRSAASLSIAEQYVKAFNELAKTNNTLIVPSD 64 (296)
Q Consensus 29 ~~~g~~~a~~~~va~~yi~~f~~l~~~~~~vi~p~~ 64 (296)
..+|-++-.-+++|.+.|.. +|..-....++|++
T Consensus 61 dkDGrmdi~EfSIAmkLi~l--kLqG~~lP~~LPPs 94 (1118)
T KOG1029|consen 61 DKDGRMDIREFSIAMKLIKL--KLQGIQLPPVLPPS 94 (1118)
T ss_pred CccccchHHHHHHHHHHHHH--HhcCCcCCCCCChH
Confidence 45788898899999988876 44444445556664
No 121
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.59 E-value=60 Score=25.85 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEE
Q psy16696 183 NESIVHAINNASEAWGITCLRYEI 206 (296)
Q Consensus 183 ~~~v~~~l~~~l~~~Gi~i~~v~I 206 (296)
.-++++.|.+.|.+.|.+|.++.-
T Consensus 10 G~~lK~~l~~~L~~~g~eV~D~G~ 33 (143)
T TIGR01120 10 GFILKEEIKAFLVERGVKVIDKGT 33 (143)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCC
Confidence 356788888889999999999875
No 122
>KOG2621|consensus
Probab=24.56 E-value=1.2e+02 Score=26.96 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=40.1
Q ss_pred CchHHHHHHHHHHHhHHhHHHHHHHhccc-CccchhcccHhHHHHHHHHhhh-ccCCeeEecCCcchH
Q psy16696 3 TTPVATALLSVAEARAKSLDLVAKALETK-DGRSAASLSIAEQYVKAFNELA-KTNNTLIVPSDANNI 68 (296)
Q Consensus 3 ~~~~a~~~~~~a~a~a~~~~~~~~a~~~~-g~~~a~~~~va~~yi~~f~~l~-~~~~~vi~p~~~~~~ 68 (296)
++-+|.|....|+.+..+.+..++|-... +.+.+.|| .|+..+..++ ..++++++|.++..+
T Consensus 214 A~reA~Akviaaege~~as~al~~aa~v~~~sp~alqL----ryLqtl~sia~e~~~tivfP~p~e~l 277 (288)
T KOG2621|consen 214 ATREARAKVIAAEGEKKASEALKEAADVISESPIALQL----RYLQTLNSIAAEKNSTIVFPLPIDLL 277 (288)
T ss_pred hhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhh----hhhhcchhhhcCCCCCcccCCCHHHH
Confidence 34567777777777777777777665322 34554443 5788888886 445668889775433
No 123
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=24.47 E-value=4e+02 Score=21.84 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=11.0
Q ss_pred CCHHHHHHhH-HHHHHHHHH
Q psy16696 170 ISLDKVFRER-ESLNESIVH 188 (296)
Q Consensus 170 ~~~~el~~~R-~~i~~~v~~ 188 (296)
-++..++.+| ..|...+.+
T Consensus 47 kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 5777777765 444444443
No 124
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=24.11 E-value=1.8e+02 Score=24.68 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHccCCHHHHHHh
Q psy16696 150 DPEFAITQLAQTTMRSELGKISLDKVFRE 178 (296)
Q Consensus 150 ~~~~~l~~~~~~~lr~vi~~~~~~el~~~ 178 (296)
..++.|.+++-+++|.++|.|+.++++..
T Consensus 90 ~LE~~l~~LVl~~Vr~ILg~fd~~ell~r 118 (207)
T PF06635_consen 90 GLEQELAELVLEIVRKILGEFDPDELLVR 118 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 35677888899999999999999998753
No 125
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=23.74 E-value=4.2e+02 Score=21.83 Aligned_cols=20 Identities=10% Similarity=-0.069 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q psy16696 236 SEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 236 Ae~~~~~~~~~A~a~a~~~~ 255 (296)
|+.+++..+..|+.+++..+
T Consensus 15 A~~ea~~il~~A~~~a~~i~ 34 (198)
T PRK03963 15 AEQKIEYILEEAQKEAEKIK 34 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 126
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=23.08 E-value=3.6e+02 Score=20.93 Aligned_cols=6 Identities=17% Similarity=0.518 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy16696 215 VNEAMQ 220 (296)
Q Consensus 215 ~~~ai~ 220 (296)
+...|+
T Consensus 20 i~~~l~ 25 (147)
T TIGR01144 20 LAKAIE 25 (147)
T ss_pred HHHHHH
Confidence 333343
No 127
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=22.53 E-value=5.1e+02 Score=22.83 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhhhHHHH
Q psy16696 237 EGIRAADINVAEGKRQA 253 (296)
Q Consensus 237 e~~~~~~~~~A~a~a~~ 253 (296)
..++...+..|+.+.+.
T Consensus 87 ~~ea~~~l~~a~~q~e~ 103 (281)
T PRK06669 87 TDEASSIIEKLQMQIER 103 (281)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 128
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=22.33 E-value=4.7e+02 Score=21.90 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=6.2
Q ss_pred HHHHHHHhhhHHHHHH
Q psy16696 240 RAADINVAEGKRQAKI 255 (296)
Q Consensus 240 ~~~~~~~A~a~a~~~~ 255 (296)
++.....|..+++...
T Consensus 19 ak~I~~eA~~eae~i~ 34 (194)
T COG1390 19 AEEILEEAREEAEKIK 34 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
No 129
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=22.20 E-value=4.4e+02 Score=21.59 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 233 ILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 233 ~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
..+++...+..+..|+.+.+..+
T Consensus 107 ~~ea~~~~~~~~~~A~~e~~~~~ 129 (181)
T PRK13454 107 RAEIQAELDVAIAKADAEIAAKA 129 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555444444
No 130
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=21.01 E-value=74 Score=25.34 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEE
Q psy16696 183 NESIVHAINNASEAWGITCLRYEI 206 (296)
Q Consensus 183 ~~~v~~~l~~~l~~~Gi~i~~v~I 206 (296)
.-.+++.|.+.|.+.|.+|.++.-
T Consensus 9 G~~lK~~l~~~L~~~g~eV~D~G~ 32 (144)
T TIGR00689 9 GLELKSEIIEHLKQKGHEVIDCGT 32 (144)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCC
Confidence 346788888899999999999876
No 131
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=20.50 E-value=4.4e+02 Score=20.89 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=6.0
Q ss_pred CHHHHHHhHH
Q psy16696 171 SLDKVFRERE 180 (296)
Q Consensus 171 ~~~el~~~R~ 180 (296)
++..++.+|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 5666666644
No 132
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=20.22 E-value=1.7e+02 Score=21.43 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhcc-CeEEEEEEE
Q psy16696 183 NESIVHAINNASEAW-GITCLRYEI 206 (296)
Q Consensus 183 ~~~v~~~l~~~l~~~-Gi~i~~v~I 206 (296)
..++++.+.+.+..+ |+.+.+|.|
T Consensus 78 ~~~iq~~V~~~v~~~tg~~v~~V~V 102 (108)
T PF03780_consen 78 AEEIQEKVKEAVEEMTGIEVSEVNV 102 (108)
T ss_pred HHHHHHHHHHHHHHHHCCeeEEEEE
Confidence 334444444445444 777766654
No 133
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=20.05 E-value=5.5e+02 Score=21.88 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696 225 AERKKRAAILESEGIRAADINVAEGKRQAKILEAA 259 (296)
Q Consensus 225 Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~ 259 (296)
|....+..+..|..++...+..|..++.....+++
T Consensus 39 a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~qaq 73 (224)
T PRK15354 39 AKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQ 73 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555555555555555444443333
Done!