Query psy16696
Match_columns 296
No_of_seqs 282 out of 1493
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 19:40:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 9.4E-29 3.2E-33 206.6 17.3 152 98-250 2-153 (188)
2 4fvg_A Stomatin; mixed alpha-b 100.0 7.3E-29 2.5E-33 195.6 12.2 131 94-225 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 4.3E-24 1.5E-28 170.3 4.8 129 98-227 3-140 (143)
4 2rpb_A Hypothetical membrane p 99.9 3.2E-22 1.1E-26 153.2 10.5 108 107-214 6-113 (113)
5 2zuo_A MVP, major vault protei 98.9 4.4E-07 1.5E-11 88.1 22.3 138 81-219 475-654 (861)
6 3v6i_B V-type ATP synthase, su 92.1 2.3 8E-05 30.3 10.6 32 230-261 19-50 (105)
7 4efa_G V-type proton ATPase su 78.5 10 0.00035 28.1 7.6 40 216-255 9-48 (119)
8 3v6i_A V-type ATP synthase sub 72.9 31 0.0011 27.3 9.9 32 224-255 10-41 (187)
9 2zuo_A MVP, major vault protei 72.7 27 0.00092 34.5 10.8 58 194-251 633-699 (861)
10 3v6i_B V-type ATP synthase, su 69.9 27 0.00092 24.8 10.2 32 224-255 24-55 (105)
11 3j20_A 30S ribosomal protein S 56.6 77 0.0026 25.5 9.8 68 119-193 108-177 (198)
12 2xzm_4 40S ribosomal protein S 54.6 43 0.0015 28.3 7.5 87 119-208 129-220 (265)
13 2jo5_A KIA7F; peptide, oligome 53.8 9.7 0.00033 19.2 2.0 20 14-34 2-21 (26)
14 2jo4_A KIA7; peptide, oligomer 53.5 9.7 0.00033 19.2 2.0 20 14-34 2-21 (26)
15 2k6i_A Uncharacterized protein 53.3 30 0.001 21.8 4.7 28 224-251 23-50 (56)
16 3v6i_A V-type ATP synthase sub 53.2 80 0.0027 24.8 8.8 23 236-258 11-33 (187)
17 2kk7_A V-type ATP synthase sub 47.6 28 0.00096 21.5 4.0 14 240-253 23-36 (52)
18 2k6i_A Uncharacterized protein 46.1 13 0.00043 23.6 2.2 21 235-255 23-43 (56)
19 2acm_B Mucin-1; auto-catalytic 45.0 29 0.00098 21.8 3.6 22 193-214 31-52 (55)
20 1zbp_A Hypothetical protein VP 44.3 12 0.0004 32.0 2.4 58 79-136 150-210 (273)
21 3bk6_A PH stomatin; archaea, t 43.5 43 0.0015 26.4 5.7 26 234-259 126-151 (188)
22 3u5c_B RP10A, 40S ribosomal pr 36.7 40 0.0014 28.4 4.5 76 118-193 125-204 (255)
23 2b5u_A Colicin E3; high resolu 35.6 2.7E+02 0.0092 25.7 11.8 36 197-232 278-313 (551)
24 2kk7_A V-type ATP synthase sub 32.6 87 0.003 19.2 4.8 6 281-286 36-41 (52)
25 4efa_G V-type proton ATPase su 24.1 2.1E+02 0.0072 20.9 8.1 32 230-261 12-43 (119)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=9.4e-29 Score=206.61 Aligned_cols=152 Identities=38% Similarity=0.600 Sum_probs=144.6
Q ss_pred cceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHH
Q psy16696 98 IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFR 177 (296)
Q Consensus 98 ~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~ 177 (296)
|++++..+ ++|.+++++++..++|+|+++|+|+++++|||.||..+++.+.|+...+.+++++.+|+++|+++++++++
T Consensus 2 fi~~v~~v-d~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~ 80 (188)
T 3bk6_A 2 IFEKAVIV-DLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLS 80 (188)
T ss_dssp CEEECCCC-CSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ceEEEEEE-eeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHh
Confidence 67898888 56999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy16696 178 ERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAILESEGIRAADINVAEGK 250 (296)
Q Consensus 178 ~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~ 250 (296)
+|++|+..+.+.+++.+.+|||+|++|.|++|+||+++.++|++++.|++++++.+.+|+|++++.+..+++.
T Consensus 81 ~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~ 153 (188)
T 3bk6_A 81 ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAA 153 (188)
T ss_dssp CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888777663
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.96 E-value=7.3e-29 Score=195.60 Aligned_cols=131 Identities=34% Similarity=0.636 Sum_probs=107.3
Q ss_pred EEeCcceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHH
Q psy16696 94 ILIPIIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLD 173 (296)
Q Consensus 94 ~~~P~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~ 173 (296)
++.||++++.++ ++|.+++++++++++|+|++.|.|+++++|||.||.+|+|++.|++..+..+++++||+++|+++++
T Consensus 3 l~~P~id~v~~v-d~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~ld 81 (133)
T 4fvg_A 3 LGSPSTDSAAKV-DMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLS 81 (133)
T ss_dssp -----------C-CCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHH
T ss_pred CCCCceeEEEEE-EeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhhhhHHHHHHHHHHHHHHHHhccccHH
Confidence 778999999999 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHH
Q psy16696 174 KVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEA 225 (296)
Q Consensus 174 el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~A 225 (296)
+++++|++|...+++.+++.+.+|||+|.+|+|++++||+++.++|+++++|
T Consensus 82 eil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 82 QILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999877765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.89 E-value=4.3e-24 Score=170.33 Aligned_cols=129 Identities=17% Similarity=0.269 Sum_probs=114.8
Q ss_pred cceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEEEEc-CcccccccC--------CCHHHHHHHHHHHHHHHHHc
Q psy16696 98 IIDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYLKIN-DPYLASYGV--------EDPEFAITQLAQTTMRSELG 168 (296)
Q Consensus 98 ~~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~-d~~~~~~~~--------~~~~~~l~~~~~~~lr~vi~ 168 (296)
|++++.++ ++|.+++++++++++|+|+++|.|+++++|||. ||..+.+.. ......+.+++++.||+++|
T Consensus 3 ~i~~v~~v-dlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG 81 (143)
T 1win_A 3 SGSSGQRI-SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG 81 (143)
T ss_dssp CCCCCCSC-CCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEE-ECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 57888888 679999999999999999999999999999998 576554322 12455688899999999999
Q ss_pred cCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEeecCCChHHHHHHHHHHHHHH
Q psy16696 169 KISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAER 227 (296)
Q Consensus 169 ~~~~~el~~~R~~i~~~v~~~l~~~l~~~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~ 227 (296)
++++++++++|+.|...+.+.+++.+.+|||+|.+|.|+||+||+++.++|++++.|+.
T Consensus 82 ~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae~ 140 (143)
T 1win_A 82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGP 140 (143)
T ss_dssp HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999997776653
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.87 E-value=3.2e-22 Score=153.22 Aligned_cols=108 Identities=36% Similarity=0.650 Sum_probs=104.8
Q ss_pred eceeEeeecCCcceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHH
Q psy16696 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESI 186 (296)
Q Consensus 107 ~~r~~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v 186 (296)
++|.+++++++..++|+|+++|.++++++|||.||.++++++.++...+.+.+++++|+++|++++++++++|++|+..+
T Consensus 6 d~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~~i 85 (113)
T 2rpb_A 6 DLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINARL 85 (113)
T ss_dssp CCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHHHH
T ss_pred eeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCeEEEEEEEeecCCChH
Q psy16696 187 VHAINNASEAWGITCLRYEIRDIKLPSR 214 (296)
Q Consensus 187 ~~~l~~~l~~~Gi~i~~v~I~~i~~p~~ 214 (296)
++.+++.+.+|||+|.+|.|++++||++
T Consensus 86 ~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 86 REELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.86 E-value=4.4e-07 Score=88.07 Aligned_cols=138 Identities=9% Similarity=0.187 Sum_probs=93.1
Q ss_pred cCeeeEEecCccEEEeCcceeEEEE----------eeceeEeeecCCc------ceeccCCcEEEEEEEEEEEEc--Cc-
Q psy16696 81 MGKYHRILEPGLNILIPIIDKIKYV----------QSLKEIAIDVPQQ------SAITSDNVTLSIDGVLYLKIN--DP- 141 (296)
Q Consensus 81 ~G~~~~~~~pG~~~~~P~~~~v~~~----------~~~r~~~~~~~~~------~~~T~D~~~v~v~~~v~yrI~--d~- 141 (296)
-|+..-+.+|-+.+.-|- +.+..+ ..++...+.+.+. .+-|+|...+.+..+++|... |+
T Consensus 475 ~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~L~LsYnW~F~~~d~~ 553 (861)
T 2zuo_A 475 AKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRN 553 (861)
T ss_dssp SCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEEEEEEEEEEECCTTTT
T ss_pred CCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEEEEEEEEEEEeccCCC
Confidence 345444788988766663 333332 0122222333332 467999999999999999884 44
Q ss_pred --c--cccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHH-HHHHHHH---------------HH--HHhhccCe
Q psy16696 142 --Y--LASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESL-NESIVHA---------------IN--NASEAWGI 199 (296)
Q Consensus 142 --~--~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i-~~~v~~~---------------l~--~~l~~~Gi 199 (296)
. ...|.+.|+-...-..+.+.+|..++..++++++.+-..| ...+... .+ -.+...|+
T Consensus 554 ~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~~~~~~~~~~~F~~N~l 633 (861)
T 2zuo_A 554 DPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGL 633 (861)
T ss_dssp CHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC-------------CCCSCEECTTTCE
T ss_pred ChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccccccCcccceEEccCCe
Confidence 2 5679999999999999999999999999999999875444 2222111 01 11345699
Q ss_pred EEEEEEEeecCCChH-HHHHH
Q psy16696 200 TCLRYEIRDIKLPSR-VNEAM 219 (296)
Q Consensus 200 ~i~~v~I~~i~~p~~-~~~ai 219 (296)
.|.+|.|+++.|-++ ..+++
T Consensus 634 vitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 634 VVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp EEEEEEEEEEEESSHHHHHHH
T ss_pred EEEEEeeeeecccCHHHHHHH
Confidence 999999999998543 44443
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=92.14 E-value=2.3 Score=30.31 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696 230 RAAILESEGIRAADINVAEGKRQAKILEAAKY 261 (296)
Q Consensus 230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~ 261 (296)
.+++..|+.++...+..|++++.+.+.+|+..
T Consensus 19 ~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~ 50 (105)
T 3v6i_B 19 LERLEAAKKEAEERVKRAEAEAKALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555444433
No 7
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=78.49 E-value=10 Score=28.09 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 216 NEAMQMQVEAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 216 ~~ai~~~~~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
.+.|...+.|++++...+.+|+.++...+.+|+.+++..+
T Consensus 9 s~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EI 48 (119)
T 4efa_G 9 KNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEI 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999988777
No 8
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=72.92 E-value=31 Score=27.29 Aligned_cols=32 Identities=31% Similarity=0.252 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 224 EAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 224 ~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
.|+.+.+.-+.+|+.+++..+..|+.+++...
T Consensus 10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~ 41 (187)
T 3v6i_A 10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALL 41 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455566666666666666665555
No 9
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=72.70 E-value=27 Score=34.49 Aligned_cols=58 Identities=10% Similarity=0.046 Sum_probs=32.4
Q ss_pred hhccCeEEEEEEEeecCCChHHHHHHH-------HHH--HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy16696 194 SEAWGITCLRYEIRDIKLPSRVNEAMQ-------MQV--EAERKKRAAILESEGIRAADINVAEGKR 251 (296)
Q Consensus 194 l~~~Gi~i~~v~I~~i~~p~~~~~ai~-------~~~--~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a 251 (296)
|-=..|+|.+|...|..--+.+++++. ..+ .|+++++....+|++.-+.+++..++++
T Consensus 633 lvitsVDvqsvEpvDqrtrd~LqkSVqlAiEItT~sqEa~Ar~~A~~~eQea~g~Lerqki~d~a~a 699 (861)
T 2zuo_A 633 LVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699 (861)
T ss_dssp EEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeeecccCHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445578888888888887777666654 112 2333333444445555444444444443
No 10
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=69.87 E-value=27 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy16696 224 EAERKKRAAILESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 224 ~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
.|.++....+.+|++++......|+..+....
T Consensus 24 ~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ 55 (105)
T 3v6i_B 24 AAKKEAEERVKRAEAEAKALLEEAEAKAKALE 55 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888888777777765433
No 11
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.58 E-value=77 Score=25.54 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=49.6
Q ss_pred ceeccCCcEEEEEEEEEEEEcCcccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh--HHHHHHHHHHHHHHH
Q psy16696 119 SAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE--RESLNESIVHAINNA 193 (296)
Q Consensus 119 ~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~v~~~l~~~ 193 (296)
++.|+||..+.+-+...-.- .-...-...|+......+...++..+++++... -+.+..++....+.-
T Consensus 108 dVkT~DGy~lRvf~i~fT~k-------ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~I 177 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMR-------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKI 177 (198)
T ss_dssp EEECTTSCEEEEEEEEEECS-------SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEEEec-------cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCcc
Confidence 47788998888766543221 112345567899999999999999999999876 467777777766655
No 12
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=54.58 E-value=43 Score=28.26 Aligned_cols=87 Identities=15% Similarity=0.201 Sum_probs=54.3
Q ss_pred ceeccCCcEEEEEEEEEEEEcC-----cccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHH
Q psy16696 119 SAITSDNVTLSIDGVLYLKIND-----PYLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRERESLNESIVHAINNA 193 (296)
Q Consensus 119 ~~~T~D~~~v~v~~~v~yrI~d-----~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~v~~~l~~~ 193 (296)
++.|.||..+.|-+...-+-.. -.+..|-...-...|+......+...++..++.++...- +...+-.++...
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~keI~k~ 206 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKKIEKE 206 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHHHHHH
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHHHHHH
Confidence 4779999998887665433221 122233333455678889999999999999999998652 334444445555
Q ss_pred hhccCeEEEEEEEee
Q psy16696 194 SEAWGITCLRYEIRD 208 (296)
Q Consensus 194 l~~~Gi~i~~v~I~~ 208 (296)
+... ..+.+|.|+.
T Consensus 207 ~k~I-yPL~~V~IrK 220 (265)
T 2xzm_4 207 TKNI-FPLQNITIRK 220 (265)
T ss_dssp HTTT-CCEEEEEEEE
T ss_pred hhhc-cccceEEEEE
Confidence 5442 2344455444
No 13
>2jo5_A KIA7F; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=53.82 E-value=9.7 Score=19.22 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.4
Q ss_pred HHHhHHhHHHHHHHhcccCcc
Q psy16696 14 AEARAKSLDLVAKALETKDGR 34 (296)
Q Consensus 14 a~a~a~~~~~~~~a~~~~g~~ 34 (296)
|.|.|.+|+.|+.-|+ .||-
T Consensus 2 akaaaaaikaiaaiik-aggf 21 (26)
T 2jo5_A 2 AKAAAAAIKAIAAIIK-AGGF 21 (26)
T ss_pred chHHHHHHHHHHHHHH-cCCc
Confidence 5677888999998886 4553
No 14
>2jo4_A KIA7; peptide, oligomer, prebiotic, de novo protein; NMR {Synthetic}
Probab=53.52 E-value=9.7 Score=19.22 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHhHHhHHHHHHHhcccCcc
Q psy16696 14 AEARAKSLDLVAKALETKDGR 34 (296)
Q Consensus 14 a~a~a~~~~~~~~a~~~~g~~ 34 (296)
|.|.|.+|+.|+.-|+ .||.
T Consensus 2 akaaaaaikaiaaiik-aggy 21 (26)
T 2jo4_A 2 AKAAAAAIKAIAAIIK-AGGY 21 (26)
T ss_pred chHHHHHHHHHHHHHH-cCCc
Confidence 5677888999998886 5654
No 15
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=53.34 E-value=30 Score=21.85 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy16696 224 EAERKKRAAILESEGIRAADINVAEGKR 251 (296)
Q Consensus 224 ~Ae~~~~a~~~~Ae~~~~~~~~~A~a~a 251 (296)
.|++.++..+.+|+.+++..+..|..++
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444444443
No 16
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=53.15 E-value=80 Score=24.80 Aligned_cols=23 Identities=35% Similarity=0.161 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q psy16696 236 SEGIRAADINVAEGKRQAKILEA 258 (296)
Q Consensus 236 Ae~~~~~~~~~A~a~a~~~~~ea 258 (296)
|+.+++..+..|+.+++..+-+|
T Consensus 11 A~~~a~~I~~eA~~~a~~I~~eA 33 (187)
T 3v6i_A 11 VEAEIQALLQEAEAKAEAVKREA 33 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544333
No 17
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=47.58 E-value=28 Score=21.51 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=5.3
Q ss_pred HHHHHHHhhhHHHH
Q psy16696 240 RAADINVAEGKRQA 253 (296)
Q Consensus 240 ~~~~~~~A~a~a~~ 253 (296)
++..+..|+.+++.
T Consensus 23 A~~Il~eA~~eA~~ 36 (52)
T 2kk7_A 23 ANKIISEAEAEKAK 36 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 18
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=46.12 E-value=13 Score=23.58 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q psy16696 235 ESEGIRAADINVAEGKRQAKI 255 (296)
Q Consensus 235 ~Ae~~~~~~~~~A~a~a~~~~ 255 (296)
.||.++...+..|+.+++..+
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii 43 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIK 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444
No 19
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=44.99 E-value=29 Score=21.78 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=15.0
Q ss_pred HhhccCeEEEEEEEeecCCChH
Q psy16696 193 ASEAWGITCLRYEIRDIKLPSR 214 (296)
Q Consensus 193 ~l~~~Gi~i~~v~I~~i~~p~~ 214 (296)
....|.+.|.+|.++|+.+|..
T Consensus 31 a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 31 AASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHCCCEEEEEEECC-----
T ss_pred ccccccceecceeEEeccCCCc
Confidence 4458999999999999999853
No 20
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=44.27 E-value=12 Score=32.05 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=32.1
Q ss_pred hhcCeeeEEe-cCccEEEeCc--ceeEEEEeeceeEeeecCCcceeccCCcEEEEEEEEEE
Q psy16696 79 ERMGKYHRIL-EPGLNILIPI--IDKIKYVQSLKEIAIDVPQQSAITSDNVTLSIDGVLYL 136 (296)
Q Consensus 79 ~r~G~~~~~~-~pG~~~~~P~--~~~v~~~~~~r~~~~~~~~~~~~T~D~~~v~v~~~v~y 136 (296)
.|+|-+-.++ ..|-|+.+|| |.++..-...+..-+-+.+..+...||-....-+-+.|
T Consensus 150 ~RlGpv~E~i~~~G~Y~WlPf~~I~~l~~~~P~~l~DlvWrpa~l~l~dG~~~~g~iPaRY 210 (273)
T 1zbp_A 150 DRLGGYIELFSTAGNYFLVPIASINTLEIKSATSLLESVWRPVEFDIDGLGEGEGHMPMTY 210 (273)
T ss_dssp TTTTTEEEEECTTSCEEEEEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEEEEEEEECBC
T ss_pred cCCcceEEEEEeCCeEEEeeHHHhhcccccCCCcHHHhhccccEEEEecCCeeEEEeeccC
Confidence 4688888877 7888888998 33333321111211222334455667766555544444
No 21
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=43.49 E-value=43 Score=26.36 Aligned_cols=26 Identities=38% Similarity=0.319 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy16696 234 LESEGIRAADINVAEGKRQAKILEAA 259 (296)
Q Consensus 234 ~~Ae~~~~~~~~~A~a~a~~~~~ea~ 259 (296)
.+|+.++++.+.+|+++++.....++
T Consensus 126 ~~Aere~~A~i~~Aege~~a~~~~a~ 151 (188)
T 3bk6_A 126 AEAERERRARITLAEAERQAAEKLRE 151 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45667777788888888877774433
No 22
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=36.68 E-value=40 Score=28.36 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=51.4
Q ss_pred cceeccCCcEEEEEEEEEEEEc-Cc-ccccccCCCHHHHHHHHHHHHHHHHHccCCHHHHHHh--HHHHHHHHHHHHHHH
Q psy16696 118 QSAITSDNVTLSIDGVLYLKIN-DP-YLASYGVEDPEFAITQLAQTTMRSELGKISLDKVFRE--RESLNESIVHAINNA 193 (296)
Q Consensus 118 ~~~~T~D~~~v~v~~~v~yrI~-d~-~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~v~~~l~~~ 193 (296)
.++.|.||..+.|-+...-.-. +. .+..|-...-...|+......+...++..++.++... -+.|..+|....+..
T Consensus 125 vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~I 204 (255)
T 3u5c_B 125 VTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDI 204 (255)
T ss_dssp EEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTT
T ss_pred EEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhccc
Confidence 4578999999888766543221 11 2223333445667899999999999999999999876 356666666555543
No 23
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=35.65 E-value=2.7e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=27.5
Q ss_pred cCeEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHH
Q psy16696 197 WGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAA 232 (296)
Q Consensus 197 ~Gi~i~~v~I~~i~~p~~~~~ai~~~~~Ae~~~~a~ 232 (296)
-|++-.-|.+.+|-.|.++.+..++-..++|+-...
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~ 313 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDAT 313 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhc
Confidence 488888899999999999988777666666655443
No 24
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=32.56 E-value=87 Score=19.18 Aligned_cols=6 Identities=17% Similarity=0.014 Sum_probs=2.1
Q ss_pred HHHHhh
Q psy16696 281 ADINVA 286 (296)
Q Consensus 281 ~~~~~A 286 (296)
..+..|
T Consensus 36 ~Ii~eA 41 (52)
T 2kk7_A 36 KILEKA 41 (52)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 25
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=24.13 E-value=2.1e+02 Score=20.85 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy16696 230 RAAILESEGIRAADINVAEGKRQAKILEAAKY 261 (296)
Q Consensus 230 ~a~~~~Ae~~~~~~~~~A~a~a~~~~~ea~~~ 261 (296)
-..+..||.++...+..|+..+..++-+|..+
T Consensus 12 IQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~E 43 (119)
T 4efa_G 12 IATLLQAEKEAHEIVSKARKYRQDKLKQAKTD 43 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777666666444333
Done!