RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16696
(296 letters)
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 143
Score = 99.8 bits (248), Expect = 1e-26
Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 107 SLKEIAIDVPQQSAITSDNVTLSIDGVLYLKINDP---------YLASYGVEDPEFAITQ 157
SL+ + + + T++ V L++ GV +KI V+D + + Q
Sbjct: 11 SLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQ 70
Query: 158 LAQTTMRSELGKISLDKVFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNE 217
+ +RS LG +++++++++R+ + + GI L + I+D+
Sbjct: 71 TLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLS 130
Query: 218 AMQMQVEAERK 228
++ +
Sbjct: 131 SLGKTQTSGPS 141
>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP
decarboxylase) {Escherichia coli [TaxId: 562]}
Length = 231
Score = 28.3 bits (62), Expect = 1.0
Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 6/227 (2%)
Query: 55 TNNTLIVPSDANNIASMVTQAWVVERMGKYHRILEPGLNILIPIIDKIKYVQSLKEIAID 114
TN+ ++V D +N + V+++ L+ G + ++V+ L++ D
Sbjct: 2 TNSPVVVALDYHNRDDALA---FVDKIDPRDCRLKVGKEMFTL--FGPQFVRELQQRGFD 56
Query: 115 VPQQSAITSDNVTLSIDGVLYLKINDPYLASYGVEDPEFAITQLAQTTMRSELGKISLDK 174
+ T + + + + +T + + L
Sbjct: 57 IFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGAR-MMTAAREALVPFGKDAPLLIA 115
Query: 175 VFRERESLNESIVHAINNASEAWGITCLRYEIRDIKLPSRVNEAMQMQVEAERKKRAAIL 234
V +V S A L + L V A + + + L
Sbjct: 116 VTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKL 175
Query: 235 ESEGIRAADINVAEGKRQAKILEAAKYLCKLLIKRAAILESEGIRAA 281
+ GIR + +R +A ++ + +S
Sbjct: 176 VTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQT 222
>d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp.
AR9 [TaxId: 301298]}
Length = 127
Score = 27.2 bits (60), Expect = 1.4
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 264 KLLIKRAAILESEGIRAADINVAEGK 289
K I+ ++ + AD+ + +
Sbjct: 1 KKWIRGGTVVTAADTYQADVLIEGER 26
>d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp.
[TaxId: 275]}
Length = 123
Score = 26.5 bits (58), Expect = 2.2
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 265 LLIKRAAILESEGIRAADINVAEGK 289
LLIK I+ ++ ADI
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGET 26
>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia
pickettii [TaxId: 329]}
Length = 127
Score = 25.7 bits (56), Expect = 3.5
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 265 LLIKRAAILESEGIRAADINVAEGK 289
++IK I+ ++GI AD+ + +GK
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGK 27
>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 128
Score = 25.8 bits (56), Expect = 3.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 264 KLLIKRAAILESEGIRAADINVAEGK 289
+IK I+ + A + + +GK
Sbjct: 2 TKIIKNGTIVTATDTYEAHLLIKDGK 27
>d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine
amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri)
[TaxId: 4934]}
Length = 156
Score = 25.8 bits (56), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 265 LLIKRAAILESEGIRAADINVAEGK 289
L+IK I + I AA+I V GK
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGK 29
>d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter
aurescens [TaxId: 43663]}
Length = 126
Score = 25.4 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 265 LLIKRAAILESEGIRAADINVAEGK 289
+++K ++ S+GI ADI V +GK
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGK 28
>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase
{Escherichia coli [TaxId: 562]}
Length = 105
Score = 25.0 bits (54), Expect = 6.6
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 264 KLLIKRAAILESEGIRAADINVAEGKRQA 292
L++ A + E D+ VA GK A
Sbjct: 9 FTLLQGAHLYAPEDRGICDVLVANGKIIA 37
>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related
protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 24.8 bits (54), Expect = 9.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 264 KLLIKRAAILESEGIRAADINVAEGK 289
+LLI+ I+ + AD+ + +G
Sbjct: 2 RLLIRGGRIINDDQSFYADVYLEDGL 27
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 98
Score = 24.3 bits (53), Expect = 9.4
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 50 NELAKTNNTLI-VPSDANNIAS----MVTQAWVVERMGKYHRILEPGLNILIPIIDKIKY 104
++L + ++ + + SDA+N+ S + + ++E K H LEP +L PI +K
Sbjct: 34 SQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIET-DKPHIELEPAFKLLGPIEEKFMG 92
Query: 105 VQSLKE 110
+ L E
Sbjct: 93 IAELFE 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 998,256
Number of extensions: 44791
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 15
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)