BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16699
         (231 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
          Length = 79

 Score = 35.0 bits (79), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 5/37 (13%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLD 157
           YC C +PY    N N   MI+C LC+DWFH   +G++
Sbjct: 14  YCLCRQPY----NVN-HFMIECGLCQDWFHGSCVGIE 45


>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With N-Oxalylglycine
 pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With N-Oxalylglycine
 pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With Alpha-Ketoglutarate
 pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
           Complex With Alpha-Ketoglutarate
          Length = 488

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 5/37 (13%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLD 157
           YC C +PY          MI+C +C+DWFH   +G++
Sbjct: 39  YCVCRQPYDVNRF-----MIECDICKDWFHGSCVGVE 70


>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
          Length = 447

 Score = 32.0 bits (71), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLD 157
           YC C  PY          MI+C +C+DWFH   +G++
Sbjct: 7   YCLCRLPYDVTRF-----MIECDMCQDWFHGSCVGVE 38


>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
           H3k4me3 Peptide
          Length = 75

 Score = 30.0 bits (66), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLD 157
           YC C  PY          MI+C  C+DWFH   +G++
Sbjct: 12  YCVCRLPYDVTRF-----MIECDACKDWFHGSCVGVE 43


>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
 pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
           Complex With H3(1-9)k4me3
 pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
           K4me3 Peptide
          Length = 52

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)

Query: 123 TCARPYPDEENPNCDEMIQC-ALCEDWFHSGHLGLDSPIPDGEDYSEMSCA 172
            C RP  D+      + +QC   C++WFH   +G+   + + EDY  ++CA
Sbjct: 7   NCQRPCKDKV-----DWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52


>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
           Obliterator 1(Dio-1)
          Length = 76

 Score = 28.5 bits (62), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 11/51 (21%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIP-----DGEDY 166
           YC C +P+      N   MI C  CE+WFH   +G+          +GEDY
Sbjct: 18  YCICRQPH------NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDY 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,066,230
Number of Sequences: 62578
Number of extensions: 353811
Number of successful extensions: 624
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 20
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)