Query psy16699
Match_columns 231
No_of_seqs 177 out of 547
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:45:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o70_A PHD finger protein 13; 99.7 3E-17 1E-21 119.3 2.8 63 105-177 5-67 (68)
2 1wep_A PHF8; structural genomi 99.6 3.4E-17 1.2E-21 121.4 0.4 69 109-184 2-72 (79)
3 1we9_A PHD finger family prote 99.6 1.3E-15 4.3E-20 108.2 3.0 56 116-178 3-59 (64)
4 3kqi_A GRC5, PHD finger protei 99.5 1.2E-15 4.2E-20 112.0 -0.7 57 114-177 5-61 (75)
5 1wem_A Death associated transc 99.5 1E-15 3.4E-20 112.4 -3.1 62 106-177 5-70 (76)
6 3o7a_A PHD finger protein 13 v 99.4 2.3E-14 7.7E-19 98.5 1.4 50 117-176 2-51 (52)
7 1wee_A PHD finger family prote 99.3 4.3E-13 1.5E-17 97.6 3.4 54 116-177 13-66 (72)
8 2kgg_A Histone demethylase jar 99.3 2.3E-13 7.9E-18 93.5 -0.6 47 121-175 5-52 (52)
9 3lqh_A Histone-lysine N-methyl 99.3 1.9E-13 6.4E-18 116.3 -1.5 64 118-185 1-71 (183)
10 3kv5_D JMJC domain-containing 99.3 2.2E-13 7.6E-18 130.5 -1.3 70 107-183 25-95 (488)
11 1wew_A DNA-binding family prot 99.2 2.3E-12 7.8E-17 95.2 0.7 54 118-177 15-72 (78)
12 2rsd_A E3 SUMO-protein ligase 99.1 2.1E-11 7.1E-16 87.9 2.6 53 118-176 9-64 (68)
13 3c6w_A P28ING5, inhibitor of g 99.1 1.4E-11 4.7E-16 87.0 0.7 48 118-177 8-58 (59)
14 3kv4_A PHD finger protein 8; e 99.1 3.9E-12 1.3E-16 120.9 -3.7 59 117-182 3-62 (447)
15 2vpb_A Hpygo1, pygopus homolog 99.1 3E-12 1E-16 92.2 -3.8 50 120-176 10-65 (65)
16 2ri7_A Nucleosome-remodeling f 99.1 4.4E-12 1.5E-16 105.0 -3.5 54 118-178 7-60 (174)
17 2g6q_A Inhibitor of growth pro 99.1 2.4E-11 8.1E-16 86.7 0.7 49 118-178 10-61 (62)
18 1wen_A Inhibitor of growth fam 99.0 1.5E-10 5E-15 84.6 4.3 49 118-178 15-66 (71)
19 2xb1_A Pygopus homolog 2, B-ce 99.0 1.1E-11 3.6E-16 96.7 -2.0 51 122-179 7-63 (105)
20 2k16_A Transcription initiatio 99.0 4.2E-11 1.4E-15 87.2 0.2 52 117-177 16-68 (75)
21 1weu_A Inhibitor of growth fam 99.0 1.2E-10 4.2E-15 89.1 2.7 50 117-178 34-86 (91)
22 2vnf_A ING 4, P29ING4, inhibit 99.0 6.8E-11 2.3E-15 83.5 0.5 48 118-177 9-59 (60)
23 1x4i_A Inhibitor of growth pro 99.0 4.3E-11 1.5E-15 87.2 -0.9 50 117-178 4-56 (70)
24 2jmi_A Protein YNG1, ING1 homo 98.9 3.8E-10 1.3E-14 86.2 1.7 48 117-176 24-75 (90)
25 2lv9_A Histone-lysine N-methyl 98.8 2.2E-09 7.5E-14 82.5 4.2 50 119-178 28-77 (98)
26 3pur_A Lysine-specific demethy 98.6 6.9E-09 2.4E-13 100.3 1.5 45 136-182 55-100 (528)
27 3rsn_A SET1/ASH2 histone methy 98.6 3.2E-08 1.1E-12 83.9 4.0 66 116-186 2-69 (177)
28 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.1 2.8E-07 9.5E-12 71.3 -0.2 40 138-177 1-44 (140)
29 1f62_A Transcription factor WS 97.7 8.8E-06 3E-10 54.7 1.4 39 136-177 12-50 (51)
30 4bbq_A Lysine-specific demethy 97.6 1.8E-05 6.3E-10 61.2 2.2 44 136-179 72-116 (117)
31 2e6r_A Jumonji/ARID domain-con 97.6 2.9E-05 9.9E-10 58.8 2.4 49 120-177 17-66 (92)
32 3asl_A E3 ubiquitin-protein li 97.3 0.00012 4.1E-09 52.8 2.6 40 136-177 30-69 (70)
33 2l43_A N-teminal domain from h 97.0 0.00019 6.5E-09 53.9 1.6 55 119-182 26-82 (88)
34 2yql_A PHD finger protein 21A; 97.0 0.00035 1.2E-08 47.9 2.8 37 137-176 19-55 (56)
35 2yt5_A Metal-response element- 96.9 0.0002 6.7E-09 50.3 1.0 51 122-178 10-62 (66)
36 1xwh_A Autoimmune regulator; P 96.9 0.00044 1.5E-08 49.0 2.4 38 137-177 18-55 (66)
37 2e6s_A E3 ubiquitin-protein li 96.9 0.00072 2.5E-08 49.7 3.6 39 136-176 38-76 (77)
38 2puy_A PHD finger protein 21A; 96.9 0.00032 1.1E-08 48.7 1.6 38 137-177 15-52 (60)
39 2ku3_A Bromodomain-containing 96.9 0.00018 6.2E-09 52.1 0.2 50 119-177 17-66 (71)
40 2l5u_A Chromodomain-helicase-D 96.7 0.00047 1.6E-08 48.2 1.2 47 119-177 11-58 (61)
41 3shb_A E3 ubiquitin-protein li 96.7 0.00094 3.2E-08 49.1 2.8 39 136-176 38-76 (77)
42 1mm2_A MI2-beta; PHD, zinc fin 96.6 0.0013 4.4E-08 46.0 3.3 38 137-177 19-56 (61)
43 2ysm_A Myeloid/lymphoid or mix 96.3 0.0018 6.1E-08 49.7 2.3 46 123-177 59-104 (111)
44 3ny3_A E3 ubiquitin-protein li 96.2 0.0017 5.8E-08 47.7 2.0 47 45-93 14-64 (75)
45 2kwj_A Zinc finger protein DPF 96.0 0.0024 8.1E-08 49.6 1.8 39 136-177 70-108 (114)
46 3nis_A E3 ubiquitin-protein li 95.9 0.0044 1.5E-07 46.3 2.9 55 35-93 10-70 (82)
47 2lri_C Autoimmune regulator; Z 95.8 0.0027 9.1E-08 45.3 1.4 37 137-177 22-59 (66)
48 4gne_A Histone-lysine N-methyl 95.8 0.004 1.4E-07 48.5 2.4 44 119-175 15-60 (107)
49 3ask_A E3 ubiquitin-protein li 95.8 0.0058 2E-07 53.4 3.6 40 136-177 186-225 (226)
50 3v43_A Histone acetyltransfera 95.6 0.0078 2.7E-07 46.4 3.3 38 136-177 74-112 (112)
51 1wev_A Riken cDNA 1110020M19; 95.1 0.0082 2.8E-07 44.8 2.0 53 120-178 18-73 (88)
52 3o36_A Transcription intermedi 94.3 0.029 1E-06 46.3 3.5 39 137-178 14-52 (184)
53 3u5n_A E3 ubiquitin-protein li 94.2 0.024 8.3E-07 47.8 2.9 39 137-178 17-55 (207)
54 2ysm_A Myeloid/lymphoid or mix 91.8 0.13 4.3E-06 39.2 3.4 36 137-175 20-55 (111)
55 1fp0_A KAP-1 corepressor; PHD 90.5 0.23 8E-06 37.3 3.8 38 137-177 35-72 (88)
56 3v43_A Histone acetyltransfera 89.2 0.018 6E-07 44.4 -3.5 40 136-175 23-62 (112)
57 2ro1_A Transcription intermedi 87.8 0.33 1.1E-05 40.5 3.2 37 137-177 12-49 (189)
58 2kwj_A Zinc finger protein DPF 85.0 0.099 3.4E-06 40.3 -1.4 39 136-174 20-58 (114)
59 2yvr_A Transcription intermedi 51.5 5.4 0.00019 25.5 1.2 28 48-81 18-45 (50)
60 3ddt_A E3 ubiquitin-protein li 47.6 6.6 0.00022 25.0 1.1 27 49-81 19-46 (48)
61 2did_A Tripartite motif protei 42.4 9.4 0.00032 24.7 1.3 28 48-81 19-47 (53)
62 1fre_A Nuclear factor XNF7; zi 40.7 9.4 0.00032 23.4 1.0 21 61-81 21-42 (42)
63 2dja_A Midline-2; tripartite m 40.2 10 0.00035 26.7 1.2 30 48-83 30-60 (84)
64 2d8u_A Ubiquitin ligase TRIM63 39.9 8.8 0.0003 25.6 0.8 28 49-82 21-49 (64)
65 2csv_A Tripartite motif protei 34.9 14 0.00049 25.3 1.3 28 48-81 29-56 (72)
66 1wil_A KIAA1045 protein; ring 33.2 19 0.00065 27.0 1.8 47 136-182 26-81 (89)
67 2yrg_A Tripartite motif-contai 29.8 20 0.00069 23.9 1.3 27 49-81 26-53 (59)
68 2egm_A Tripartite motif-contai 27.1 16 0.00056 24.2 0.5 21 61-81 36-57 (57)
69 1jfi_B DR1 protein, transcript 26.6 37 0.0013 28.3 2.7 24 5-28 113-136 (179)
70 2jun_A Midline-1; B-BOX, TRIM, 24.1 29 0.00099 24.9 1.4 27 49-81 72-99 (101)
71 2kwq_A Protein MCM10 homolog; 22.1 24 0.00081 26.5 0.6 41 46-92 13-57 (92)
72 3mjh_B Early endosome antigen 21.1 26 0.00088 21.7 0.5 12 167-178 4-15 (34)
73 2d8s_A Cellular modulator of i 20.2 13 0.00045 26.5 -1.2 53 121-185 18-75 (80)
No 1
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.65 E-value=3e-17 Score=119.29 Aligned_cols=63 Identities=17% Similarity=0.396 Sum_probs=46.2
Q ss_pred CcCCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 105 DALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 105 ~~~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
.+++++|+|++++.++||+|+++++ +++||||+.|++|||..|+|+... ...+.|+|+.|...
T Consensus 5 ~~~~~~~~~~~~~~~~~CiC~~~~~------~~~MIqCd~C~~WfH~~Cvgi~~~----~~~~~~~C~~C~~s 67 (68)
T 3o70_A 5 HHHSSGRENLYFQGLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS----NVPEVFVCQKCRDS 67 (68)
T ss_dssp ---------CTTTTCCCSTTCCCCT------TCCEEECTTTCCEEETTTTTCCTT----SCCSSCCCHHHHTC
T ss_pred ccCCcccccCCCCCceEeECCCcCC------CCCEEECCCCCccccccccCcCcc----cCCCcEECCCCCCC
Confidence 3578899999999999999999984 479999999999999999998422 22369999999754
No 2
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.62 E-value=3.4e-17 Score=121.36 Aligned_cols=69 Identities=28% Similarity=0.735 Sum_probs=55.9
Q ss_pred CCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC--cccccc
Q psy16699 109 VNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY--PVLKLY 184 (231)
Q Consensus 109 ~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~--~~L~~y 184 (231)
+...|++|...+||+|++||+ + +++||||+.|++|||..||++ +....+.++.|+|+.|..+. +++++.
T Consensus 2 ~~~~~~~~~~~~~C~C~~~~d-~----~~~MIqCd~C~~WfH~~Cvgl--~~~~~~~~~~~~C~~C~~~~~~~~~K~~ 72 (79)
T 1wep_A 2 SSGSSGMALVPVYCLCRQPYN-V----NHFMIECGLCQDWFHGSCVGI--EEENAVDIDIYHCPDCEAVFGPSIMKNW 72 (79)
T ss_dssp CSCCCCCCCCCCCSTTSCSCC-S----SSCEEEBTTTCCEEEHHHHTC--CHHHHTTCSBBCCTTTTTTSCSCBCCCC
T ss_pred CCCccCccCCccEEEcCCccC-C----CCceEEcCCCCCcEEeeecCc--ccccccCCCeEECCCcccccCCCceeee
Confidence 457899999999999999994 2 589999999999999999998 33334457899999998764 444443
No 3
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.55 E-value=1.3e-15 Score=108.22 Aligned_cols=56 Identities=29% Similarity=0.630 Sum_probs=47.2
Q ss_pred CCcceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 116 NFKGKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 116 Nf~g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
+..+.|| +|++||+ + +++||||+.|++|||..|+|+ +...++.++.|+|+.|..+.
T Consensus 3 ~~e~~~C~~C~~~~~-~----~~~mI~Cd~C~~WfH~~Cvgl--~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 3 SGSSGQCGACGESYA-A----DEFWICCDLCEMWFHGKCVKI--TPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CSSCCCCSSSCCCCC-S----SSCEEECSSSCCEEETTTTTC--CTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCCccC-C----CCCEEEccCCCCCCCccccCc--ChhHhcCCCcEECCCCcCcC
Confidence 5678999 9999995 2 579999999999999999999 44445567899999998764
No 4
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.50 E-value=1.2e-15 Score=111.99 Aligned_cols=57 Identities=30% Similarity=0.730 Sum_probs=48.4
Q ss_pred CCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 114 NQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 114 n~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+-|..++||+|++||+ + +++||||+.|++|||..|||+ +...+..++.|+|+.|..+
T Consensus 5 ~~~~~~~yCiC~~~~~-~----~~~MI~Cd~C~~WfH~~Cvg~--~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 5 SMATVPVYCVCRLPYD-V----TRFMIECDACKDWFHGSCVGV--EEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TTCCCCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTC--CTTTGGGBSSCCCHHHHHH
T ss_pred CCCCCeeEEECCCcCC-C----CCCEEEcCCCCCCEecccccc--cccccCCCCEEECCCCccc
Confidence 4577899999999984 2 589999999999999999999 4445566789999999866
No 5
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.47 E-value=1e-15 Score=112.40 Aligned_cols=62 Identities=29% Similarity=0.731 Sum_probs=49.8
Q ss_pred cCCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCC----ccccccccccccc
Q psy16699 106 ALNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGE----DYSEMSCASCINM 177 (231)
Q Consensus 106 ~~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~----~~~~fiC~~C~~k 177 (231)
..|+.|.|++| ++||+|++||+ .++||||+.|++|||..|||+. ...++ ..+.|+|+.|..+
T Consensus 5 ~~~e~~~~d~~--~~~C~C~~~~~------~~~MI~Cd~C~~WfH~~Cvgl~--~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 5 SSGECEVYDPN--ALYCICRQPHN------NRFMICCDRCEEWFHGDCVGIS--EARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCCCCSCCTT--CCCSTTCCCCC------SSCEEECSSSCCEEEHHHHSCC--HHHHHHHHHHTCCCCCHHHHHH
T ss_pred CcCCccccCCC--CCEEECCCccC------CCCEEEeCCCCCcEeCeEEccc--hhhhhhccCCCCeEECcCCcCc
Confidence 34667889888 79999999984 4799999999999999999983 22211 3478999999865
No 6
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.43 E-value=2.3e-14 Score=98.49 Aligned_cols=50 Identities=22% Similarity=0.632 Sum_probs=41.7
Q ss_pred CcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699 117 FKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN 176 (231)
Q Consensus 117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~ 176 (231)
|+.+||+|++|++ +++||||+.|++|||..|+|++.. +..+.|+|+.|.+
T Consensus 2 ~d~~~C~C~~~~~------~~~MI~Cd~C~~W~H~~Cvgi~~~----~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 2 WDLVTCFCMKPFA------GRPMIECNECHTWIHLSCAKIRKS----NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCBCSTTCCBCT------TCCEEECTTTCCEEETTTTTCCGG----GCCSSCCCHHHHT
T ss_pred CcCeEEEeCCcCC------CCCEEEcCCCCccccccccCCCcc----cCCCcEECcCCCC
Confidence 6789999999974 479999999999999999998421 2236999999964
No 7
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.34 E-value=4.3e-13 Score=97.58 Aligned_cols=54 Identities=26% Similarity=0.619 Sum_probs=43.5
Q ss_pred CCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 116 NFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 116 Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+-..+||+|++++++ ..+||||+.|++|||..|+++.. .. ...+.|+|+.|..+
T Consensus 13 ~~~~~~C~C~~~~~~-----g~~mI~Cd~C~~W~H~~Cvg~~~--~~-~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 13 DNWKVDCKCGTKDDD-----GERMLACDGCGVWHHTRCIGINN--AD-ALPSKFLCFRCIEL 66 (72)
T ss_dssp CSSEECCTTCCCSCC-----SSCEEECSSSCEEEETTTTTCCT--TS-CCCSCCCCHHHHHH
T ss_pred CCcceEeeCCCccCC-----CCcEEECCCCCCccCCeeeccCc--cc-cCCCcEECCCccCC
Confidence 456899999999842 45899999999999999999842 21 24579999999865
No 8
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.28 E-value=2.3e-13 Score=93.52 Aligned_cols=47 Identities=30% Similarity=0.723 Sum_probs=37.0
Q ss_pred eEEeCCCCCCCCCCCCccceecc-ccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699 121 YCTCARPYPDEENPNCDEMIQCA-LCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI 175 (231)
Q Consensus 121 YC~C~~pYpdpe~~~~~~MIQC~-~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~ 175 (231)
-|+|++||+| +++||||+ .|++|||..|+|++ .+.++ .+.|+|+.|.
T Consensus 5 cc~C~~p~~~-----~~~mI~Cd~~C~~WfH~~Cvgl~--~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKD-----KVDWVQCDGGCDEWFHQVCVGVS--PEMAE-NEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCT-----TCCEEECTTTTCCEEETTTTTCC--HHHHH-HSCCCCSCC-
T ss_pred CCCCcCccCC-----CCcEEEeCCCCCccCcccccCCC--ccccC-CCCEECCCCC
Confidence 4789999952 57999999 99999999999993 22222 3789999984
No 9
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.28 E-value=1.9e-13 Score=116.30 Aligned_cols=64 Identities=27% Similarity=0.564 Sum_probs=48.5
Q ss_pred cceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCc------ccccccccccccCccccccc
Q psy16699 118 KGKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGED------YSEMSCASCINMYPVLKLYP 185 (231)
Q Consensus 118 ~g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~------~~~fiC~~C~~k~~~L~~y~ 185 (231)
.|.|| +|+++|++. +. +..||||+.|++|||..|+|+. ...++. ...|+|+.|..+.+.+++++
T Consensus 1 ~G~~CpiC~k~Y~~~-~~-~~~MIqCd~C~~W~H~~Cvgi~--~~~~e~~~~~pe~~~y~Cp~C~~~~~~~~~~~ 71 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDD-DY-ESKMMQCGKCDRWVHSKCENLS--DEMYEILSNLPESVAYTCVNCTERHPAEWRLA 71 (183)
T ss_dssp -CCBCTTTCCBCTTC-CT-TCCEEECTTTCCEEEGGGSSCC--HHHHHHHHHSHHHHCCCCTTTCCSSSCHHHHH
T ss_pred CcCcCCCCcCccCCc-cc-CCCeEECCCCCcccchhccccC--HHHHHHhhcCCCCCeeECcCCCCCCCHHHHHH
Confidence 37899 699999643 21 4679999999999999999983 221222 24899999999988887653
No 10
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.28 E-value=2.2e-13 Score=130.51 Aligned_cols=70 Identities=26% Similarity=0.557 Sum_probs=53.0
Q ss_pred CCCCCCcCCCCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc-Cccccc
Q psy16699 107 LNVNNTYNQNFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM-YPVLKL 183 (231)
Q Consensus 107 ~n~~N~Yn~Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k-~~~L~~ 183 (231)
.+..+.|++|..++||+|++||+ + +++||||+.|++|||..|+|+ ....++.++.|+|+.|..+ .+.+.+
T Consensus 25 s~~~~s~~~~~~~~yC~C~~~~d-~----~~~MIqCd~C~~WfH~~Cvgl--~~~~~~~~~~~~C~~C~~~~~~~~~k 95 (488)
T 3kv5_D 25 APGRASAPPPPPPVYCVCRQPYD-V----NRFMIECDICKDWFHGSCVGV--EEHHAVDIDLYHCPNCAVLHGSSLMK 95 (488)
T ss_dssp -------CCCCCCEETTTTEECC-T----TSCEEEBTTTCCEEEHHHHTC--CGGGGGGEEEBCCHHHHHHHCSCEEC
T ss_pred CCCCCCCcCCCCCeEEeCCCcCC-C----CCCeEEccCCCCceeeeecCc--CcccccCCCEEECCCCcCCcCcchhc
Confidence 33456899999999999999984 3 589999999999999999999 4445567889999999866 354443
No 11
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.19 E-value=2.3e-12 Score=95.25 Aligned_cols=54 Identities=26% Similarity=0.472 Sum_probs=42.8
Q ss_pred cceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCC--CCCccccccccccccc
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIP--DGEDYSEMSCASCINM 177 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~--~~~~~~~fiC~~C~~k 177 (231)
..+||+|+++.+ .++||||+ .|+.|||..|||+..... ..+..+.|+|+.|..+
T Consensus 15 ~~~~CiC~~~~~------~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRCVCGNSLE------TDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCSSCCCCC------CSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEeECCCcCC------CCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 679999999853 57999999 999999999999942211 1145689999999765
No 12
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.11 E-value=2.1e-11 Score=87.89 Aligned_cols=53 Identities=25% Similarity=0.469 Sum_probs=39.9
Q ss_pred cceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCCC-CCcccccccccccc
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIPD-GEDYSEMSCASCIN 176 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~~-~~~~~~fiC~~C~~ 176 (231)
..+||+|+.+++ +++||||+ .|+.|||..|||+...... .+..+.|+|+.|..
T Consensus 9 ~~v~C~C~~~~~------~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRCICSSTMV------NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECCTTCCCSC------CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEeECCCCcC------CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 358999998863 57999999 4999999999998422211 12336899999964
No 13
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.09 E-value=1.4e-11 Score=87.01 Aligned_cols=48 Identities=31% Similarity=0.821 Sum_probs=39.1
Q ss_pred cceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
..+||+|++++ .++||+|+. |. +|||..|||+.. .|. ..|+|+.|.++
T Consensus 8 e~~yC~C~~~~-------~g~mi~CD~~~C~~~wfH~~Cvgl~~-~p~----~~w~Cp~C~~~ 58 (59)
T 3c6w_A 8 EPTYCLCHQVS-------YGEMIGCDNPDCPIEWFHFACVDLTT-KPK----GKWFCPRCVQE 58 (59)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS-CCS----SCCCCHHHHCC
T ss_pred CCcEEECCCCC-------CCCeeEeeCCCCCCCCEecccCCccc-CCC----CCEECcCccCc
Confidence 56999999986 368999999 77 899999999842 222 57999999765
No 14
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.07 E-value=3.9e-12 Score=120.89 Aligned_cols=59 Identities=31% Similarity=0.747 Sum_probs=47.9
Q ss_pred CcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC-cccc
Q psy16699 117 FKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY-PVLK 182 (231)
Q Consensus 117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~-~~L~ 182 (231)
...+||+|++||+ + +++||||+.|++|||..|+|+ +.+.++..+.|+|+.|..++ +.+.
T Consensus 3 ~~~~yCiC~~~~d-~----~~~MIqCD~C~~WfH~~CVgi--~~~~~~~~~~y~C~~C~~~~~~~~~ 62 (447)
T 3kv4_A 3 SVPVYCLCRLPYD-V----TRFMIECDMCQDWFHGSCVGV--EEEKAADIDLYHCPNCEVLHGPSIM 62 (447)
T ss_dssp CCCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTC--CHHHHTTEEECCCHHHHHHHCCCEE
T ss_pred CCCeEEeCCCcCC-C----CCCeEEcCCCCcccccccCCc--CcccccCCCEEECCCCccccCCchh
Confidence 3579999999984 3 589999999999999999999 44445567899999998774 4433
No 15
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.06 E-value=3e-12 Score=92.15 Aligned_cols=50 Identities=20% Similarity=0.513 Sum_probs=39.1
Q ss_pred eeEEeCCCCCCCCCCCCccceecc-ccccccccCCCCCCCCCCCCCcc-----cccccccccc
Q psy16699 120 KYCTCARPYPDEENPNCDEMIQCA-LCEDWFHSGHLGLDSPIPDGEDY-----SEMSCASCIN 176 (231)
Q Consensus 120 ~YC~C~~pYpdpe~~~~~~MIQC~-~CEDWFH~~Clg~~~~~~~~~~~-----~~fiC~~C~~ 176 (231)
.-.+|++||+ + +.+||||+ .|++|||..|+|+ +...++.+ ..|+|+.|.+
T Consensus 10 ~C~~C~~p~~-~----~~~mI~CD~~C~~WfH~~Cvgl--t~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 10 PCGICTNEVN-D----DQDAILCEASCQKWFHRICTGM--TETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp BCTTTCSBCC-T----TSCEEEBTTTTCCEEEHHHHTC--CHHHHHHHHHCTTEEECCHHHHC
T ss_pred cCccCCCccC-C----CCCeEecccCccccCchhccCC--CHHHHHHhhccCCCcEECcCccC
Confidence 4568999996 3 57999999 9999999999999 33322222 4899999963
No 16
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.06 E-value=4.4e-12 Score=104.95 Aligned_cols=54 Identities=28% Similarity=0.699 Sum_probs=44.4
Q ss_pred cceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
.+.||+|++||+ + .++||||+.|++|||..|+|+ +....+..+.|+|+.|..+.
T Consensus 7 ~~~~C~C~~~~~-~----~~~mi~Cd~C~~WfH~~Cv~~--~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 7 TKLYCICKTPED-E----SKFYIGCDRCQNWYHGRCVGI--LQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CCEETTTTEECC-T----TSCEEECTTTCCEEEHHHHTC--CHHHHTTCSSCCCHHHHHHH
T ss_pred CCcEeeCCCCCC-C----CCCEeECCCCCchhChhhcCC--chhhccCccCeecCCCcchh
Confidence 578999999984 2 579999999999999999998 33333457899999998754
No 17
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.05 E-value=2.4e-11 Score=86.65 Aligned_cols=49 Identities=29% Similarity=0.623 Sum_probs=39.3
Q ss_pred cceeEEeCCCCCCCCCCCCccceecccc--c-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCALC--E-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~C--E-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
..+||+|++++ .++||+|+.| . +|||..|||+.. .| ...|+|+.|.++.
T Consensus 10 e~~yC~C~~~~-------~g~MI~CD~c~C~~~WfH~~Cvgl~~-~p----~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 10 EPTYCLCNQVS-------YGEMIGCDNEQCPIEWFHFSCVSLTY-KP----KGKWYCPKCRGDN 61 (62)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS-CC----SSCCCCHHHHTCC
T ss_pred CCcEEECCCCC-------CCCeeeeeCCCCCcccEecccCCcCc-CC----CCCEECcCcccCC
Confidence 46999999986 3689999994 4 999999999842 22 3689999998653
No 18
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.03 E-value=1.5e-10 Score=84.57 Aligned_cols=49 Identities=33% Similarity=0.792 Sum_probs=39.8
Q ss_pred cceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
..+||+|++++ .++||+|+. |. +|||..||++.. .| ...|+|+.|..+.
T Consensus 15 ~~~~C~C~~~~-------~g~MI~CD~~~C~~~wfH~~Cvgl~~-~p----~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT-KP----RGKWFCPRCSQES 66 (71)
T ss_dssp SCCCSTTCCCS-------CSSEECCSCSSCSCCCEETTTTTCSS-CC----SSCCCCTTTSSCS
T ss_pred CCCEEECCCCC-------CCCEeEeeCCCCCCccEecccCCcCc-CC----CCCEECCCCCccc
Confidence 57999999986 368999999 77 899999999842 22 2579999998664
No 19
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.03 E-value=1.1e-11 Score=96.70 Aligned_cols=51 Identities=22% Similarity=0.515 Sum_probs=39.7
Q ss_pred EEeCCCCCCCCCCCCccceecc-ccccccccCCCCCCCCCCCCCcc-----cccccccccccCc
Q psy16699 122 CTCARPYPDEENPNCDEMIQCA-LCEDWFHSGHLGLDSPIPDGEDY-----SEMSCASCINMYP 179 (231)
Q Consensus 122 C~C~~pYpdpe~~~~~~MIQC~-~CEDWFH~~Clg~~~~~~~~~~~-----~~fiC~~C~~k~~ 179 (231)
.+|++||++ +++||||+ .|++|||..|+|+ +....+.+ ..|+|+.|..+..
T Consensus 7 ~iC~~p~~~-----~~~mi~Cdd~C~~WfH~~CVgl--t~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 7 GACRSEVND-----DQDAILCEASCQKWFHRECTGM--TESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp TTTCSBCCT-----TSCEEECTTTTCCEEEGGGTTC--CHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCccCC-----CCCEEEecCCcccccccccCCc--CHHHHHhhccCCCCCEECccccCcCC
Confidence 479999963 46899998 9999999999999 33222222 7999999987643
No 20
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.00 E-value=4.2e-11 Score=87.20 Aligned_cols=52 Identities=27% Similarity=0.613 Sum_probs=41.5
Q ss_pred CcceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 117 FKGKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 117 f~g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
..+.|| +|+++++ .+.||+|+.|+.|||..||+++ .... ....|+|+.|..+
T Consensus 16 ~~~~~C~~C~~~~~------~~~mi~CD~C~~wfH~~Cv~~~--~~~~-~~~~w~C~~C~~~ 68 (75)
T 2k16_A 16 NQIWICPGCNKPDD------GSPMIGCDDCDDWYHWPCVGIM--AAPP-EEMQWFCPKCANK 68 (75)
T ss_dssp CEEECBTTTTBCCS------SCCEEECSSSSSEEEHHHHTCS--SCCC-SSSCCCCTTTHHH
T ss_pred CCCcCCCCCCCCCC------CCCEEEcCCCCcccccccCCCC--ccCC-CCCCEEChhccCc
Confidence 457899 9999973 4689999999999999999983 2222 2368999999865
No 21
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.99 E-value=1.2e-10 Score=89.07 Aligned_cols=50 Identities=32% Similarity=0.755 Sum_probs=40.3
Q ss_pred CcceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 117 FKGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
...+||+|++++ .++||+|+. |. +|||..||++.. .| ...|+|+.|..+.
T Consensus 34 ~e~~yCiC~~~~-------~g~MI~CD~~dC~~~WfH~~CVgl~~-~p----~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT-KP----RGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCSTTCCBC-------CSCCCCCSCSSCSCCCCCSTTTTCSS-CC----CSSCCCTTTCCCC
T ss_pred CCCcEEECCCCC-------CCCEeEecCCCCCCCCEecccCCcCc-CC----CCCEECcCccCcC
Confidence 367999999987 368999999 76 999999999842 22 2579999998654
No 22
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.97 E-value=6.8e-11 Score=83.55 Aligned_cols=48 Identities=33% Similarity=0.832 Sum_probs=38.4
Q ss_pred cceeEEeCCCCCCCCCCCCccceeccc--cc-cccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 118 KGKYCTCARPYPDEENPNCDEMIQCAL--CE-DWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 118 ~g~YC~C~~pYpdpe~~~~~~MIQC~~--CE-DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
..+||+|++++ .++||+|+. |. +|||..|||++. .|. ..|+|+.|.++
T Consensus 9 e~~~C~C~~~~-------~g~mi~CD~cdC~~~wfH~~Cvgl~~-~p~----g~w~C~~C~~~ 59 (60)
T 2vnf_A 9 EPTYCLCHQVS-------YGEMIGCDNPDCSIEWFHFACVGLTT-KPR----GKWFCPRCSQE 59 (60)
T ss_dssp CCEETTTTEEC-------CSEEEECSCTTCSSCEEETGGGTCSS-CCS----SCCCCHHHHC-
T ss_pred CCCEEECCCcC-------CCCEEEeCCCCCCCceEehhcCCCCc-CCC----CCEECcCccCc
Confidence 47999999986 368999999 66 999999999842 222 57999999765
No 23
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=4.3e-11 Score=87.20 Aligned_cols=50 Identities=28% Similarity=0.685 Sum_probs=40.5
Q ss_pred CcceeEEeCCCCCCCCCCCCccceeccccc---cccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 117 FKGKYCTCARPYPDEENPNCDEMIQCALCE---DWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CE---DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
-..+||+|++++ .++||||+.|+ +|||..||++.. . ....|+|+.|..+.
T Consensus 4 ~~~~yC~C~~~~-------~g~MI~CD~cdC~~~WfH~~Cvgl~~-~----p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 4 GSSGYCICNQVS-------YGEMVGCDNQDCPIEWFHYGCVGLTE-A----PKGKWYCPQCTAAM 56 (70)
T ss_dssp SCCCCSTTSCCC-------CSSEECCSCTTCSCCCEEHHHHTCSS-C----CSSCCCCHHHHHHH
T ss_pred CCCeEEEcCCCC-------CCCEeEeCCCCCCccCCcccccccCc-C----CCCCEECCCCCccc
Confidence 357899999985 35999999974 999999999842 1 25789999998664
No 24
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.88 E-value=3.8e-10 Score=86.18 Aligned_cols=48 Identities=29% Similarity=0.728 Sum_probs=38.6
Q ss_pred CcceeEEeCCCCCCCCCCCCccceeccccc---cccccCCCCCCCCCCCCCccccccccc-ccc
Q psy16699 117 FKGKYCTCARPYPDEENPNCDEMIQCALCE---DWFHSGHLGLDSPIPDGEDYSEMSCAS-CIN 176 (231)
Q Consensus 117 f~g~YC~C~~pYpdpe~~~~~~MIQC~~CE---DWFH~~Clg~~~~~~~~~~~~~fiC~~-C~~ 176 (231)
-..+||+|++++ .++||+|+.|+ +|||..|||+.. .| ...|+|+. |.+
T Consensus 24 ~~~~yCiC~~~~-------~g~MI~CD~c~C~~eWfH~~CVgl~~-~p----~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYCFCRNVS-------YGPMVACDNPACPFEWFHYGCVGLKQ-AP----KGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCSTTTCCC-------SSSEECCCSSSCSCSCEETTTSSCSS-CT----TSCCCSSHHHHH
T ss_pred CCCcEEEeCCCC-------CCCEEEecCCCCccccCcCccCCCCc-CC----CCCccCChhhcc
Confidence 357899999986 25799999977 999999999942 22 25899999 874
No 25
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.83 E-value=2.2e-09 Score=82.45 Aligned_cols=50 Identities=24% Similarity=0.445 Sum_probs=40.0
Q ss_pred ceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 119 g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
.+.|+|+.+++ ++.||||+.|..|||..|++++ .... .+.|+|+.|..+.
T Consensus 28 ~vrCiC~~~~~------~~~mi~Cd~C~~w~H~~C~~~~--~~~~--p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 28 VTRCICGFTHD------DGYMICCDKCSVWQHIDCMGID--RQHI--PDTYLCERCQPRN 77 (98)
T ss_dssp BCCCTTSCCSC------SSCEEEBTTTCBEEETTTTTCC--TTSC--CSSBCCTTTSSSC
T ss_pred CEEeECCCccC------CCcEEEcCCCCCcCcCcCCCCC--ccCC--CCCEECCCCcCCC
Confidence 67899999873 5799999999999999999983 2221 2479999998654
No 26
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.62 E-value=6.9e-09 Score=100.31 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=38.4
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCccccccccccccc-Ccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM-YPVLK 182 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k-~~~L~ 182 (231)
+.+||||+.|++|||+.|||+ +...++.++.|+||.|... .+.++
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi--~~~~a~~~~~y~Cp~C~~~~gps~~ 100 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGL--EQFEYYLYEKFFCPKCVPHTGHSIR 100 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTC--CGGGTTTEEECCCTTTHHHHCSCEE
T ss_pred CCCEEECCCCCcCCCCcCCCC--ChhHhcCCCeEECcCCcCCCCCcce
Confidence 689999999999999999999 5556778899999999865 45554
No 27
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.56 E-value=3.2e-08 Score=83.88 Aligned_cols=66 Identities=14% Similarity=0.276 Sum_probs=43.2
Q ss_pred CCcceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCC-CCCCCcccccccccccccC-cccccccc
Q psy16699 116 NFKGKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSP-IPDGEDYSEMSCASCINMY-PVLKLYPH 186 (231)
Q Consensus 116 Nf~g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~-~~~~~~~~~fiC~~C~~k~-~~L~~y~~ 186 (231)
|-+..||+|+.|.+ +...|+||..|..|||.+|+..... .-..+.+..|+|..|.... ++++|...
T Consensus 2 n~~~~yCYCG~~~~-----~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g~E~f~R~~~ 69 (177)
T 3rsn_A 2 DTQAGSVDEENGRQ-----LGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQA 69 (177)
T ss_dssp ---------CTTCC-----TTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTSSCEEEECCC
T ss_pred CCeeeEEEcCCCCC-----CCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCCcceeEeccC
Confidence 45567999999874 4789999999999999999974211 1122468899999999865 77766543
No 28
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.14 E-value=2.8e-07 Score=71.25 Aligned_cols=40 Identities=25% Similarity=0.666 Sum_probs=29.3
Q ss_pred cceeccccccccccCCCCCCCC----CCCCCccccccccccccc
Q psy16699 138 EMIQCALCEDWFHSGHLGLDSP----IPDGEDYSEMSCASCINM 177 (231)
Q Consensus 138 ~MIQC~~CEDWFH~~Clg~~~~----~~~~~~~~~fiC~~C~~k 177 (231)
-||||+.|++|||..|++++.. .....+...+.|+.|..+
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred CccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 3999999999999999998420 011123347999999865
No 29
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=97.72 E-value=8.8e-06 Score=54.71 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=29.1
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
.+.||.|+.|..|||..|++.+ .... ....++|+.|...
T Consensus 12 ~~~ll~Cd~C~~~~H~~Cl~p~--l~~~-P~g~W~C~~C~~~ 50 (51)
T 1f62_A 12 DDKLILCDECNKAFHLFCLRPA--LYEV-PDGEWQCPACQPA 50 (51)
T ss_dssp CSCCEECTTTCCEECHHHHCTT--CCSC-CSSCCSCTTTSCC
T ss_pred CCCEEECCCCChhhCcccCCCC--cCCC-CCCcEECcCcccc
Confidence 4689999999999999999641 1111 1258999999754
No 30
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.63 E-value=1.8e-05 Score=61.21 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=32.5
Q ss_pred CccceeccccccccccCCCCCCC-CCCCCCcccccccccccccCc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDS-PIPDGEDYSEMSCASCINMYP 179 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~-~~~~~~~~~~fiC~~C~~k~~ 179 (231)
+..||||..|++|||..|+++.. ...+.+..+.|.|+.|....|
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~~ 116 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDS 116 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC----
T ss_pred CcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCCC
Confidence 57799999999999999999732 223456677899999987654
No 31
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=2.9e-05 Score=58.81 Aligned_cols=49 Identities=27% Similarity=0.520 Sum_probs=36.7
Q ss_pred eeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 120 KYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 120 ~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
.+| +|+++.+ ...||.|+.|..|||..|++.+ ... .....++|+.|+.+
T Consensus 17 ~~C~vC~~~~~------~~~ll~CD~C~~~~H~~Cl~Pp--l~~-~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDE------DDKLLFCDGCDDNYHIFCLLPP--LPE-IPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGG------GGGCEECTTTCCEECSSSSSSC--CSS-CCSSCCCCHHHHHH
T ss_pred CCCccCCCcCC------CCCEEEcCCCCchhccccCCCC--ccc-CCCCCcCCccCcCc
Confidence 456 8998762 4799999999999999999841 111 12358999999865
No 32
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.28 E-value=0.00012 Score=52.84 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=29.8
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
.+.||.|+.|..|||..||+. +.....+-..++|+.|..+
T Consensus 30 ~~~ll~CD~C~~~yH~~Cl~P--pl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 30 PDKQLMCDECDMAFHIYCLDP--PLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp GGGEEECTTTCCEEEGGGSSS--CCSSCCSSSCCCCTTTSCC
T ss_pred CCCEEEcCCCCCceecccCCC--CcCCCCCCCCcCCcCccCc
Confidence 589999999999999999983 1111112238999999754
No 33
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.02 E-value=0.00019 Score=53.91 Aligned_cols=55 Identities=22% Similarity=0.537 Sum_probs=39.7
Q ss_pred ceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc--Ccccc
Q psy16699 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM--YPVLK 182 (231)
Q Consensus 119 g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k--~~~L~ 182 (231)
....+|+++..+ + .+.||.|+.|..|||..|++++ ..|+ ..++|+.|..+ ..+|.
T Consensus 26 ~~C~vC~~~~s~--~--~~~ll~CD~C~~~fH~~Cl~p~-~vP~----g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGESQ--N--SNVILFCDMCNLAVHQECYGVP-YIPE----GQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSSC--S--EEEEEECSSSCCCCCHHHHTCS-SCCS----SCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCCC--C--CCCEEECCCCCchhhcccCCCC-ccCC----CceECccccCccchhhhh
Confidence 456689987521 1 5799999999999999999974 2333 58999999865 34443
No 34
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.01 E-value=0.00035 Score=47.87 Aligned_cols=37 Identities=16% Similarity=0.449 Sum_probs=28.1
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN 176 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~ 176 (231)
+.||.|+.|..|||..|++.+ ... .....++|+.|++
T Consensus 19 g~ll~Cd~C~~~~H~~Cl~pp--l~~-~p~g~W~C~~C~~ 55 (56)
T 2yql_A 19 GQLLMCDTCSRVYHLDCLDPP--LKT-IPKGMWICPRCQD 55 (56)
T ss_dssp SCCEECSSSSCEECSSSSSSC--CCS-CCCSSCCCHHHHC
T ss_pred CeEEEcCCCCcceECccCCCC--cCC-CCCCceEChhhhC
Confidence 479999999999999999841 111 1235799999975
No 35
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=96.95 E-value=0.0002 Score=50.31 Aligned_cols=51 Identities=20% Similarity=0.453 Sum_probs=36.3
Q ss_pred EEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCC--CcccccccccccccC
Q psy16699 122 CTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDG--EDYSEMSCASCINMY 178 (231)
Q Consensus 122 C~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~--~~~~~fiC~~C~~k~ 178 (231)
.+|++++.. ..+.||.|+.|..|||..|++.+ .... ..-..++|+.|..+.
T Consensus 10 ~vC~~~~~~----~~~~ll~Cd~C~~~~H~~C~~p~--l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 10 TICQEEYSE----APNEMVICDKCGQGYHQLCHTPH--IDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp SSSCCCCCB----TTBCEEECSSSCCEEETTTSSSC--CCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCC----CCCCEEECCCCChHHHhhhCCCc--ccccccCCCCCEECCCCcCcc
Confidence 378877521 15899999999999999999862 2110 123579999998653
No 36
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=96.89 E-value=0.00044 Score=48.97 Aligned_cols=38 Identities=26% Similarity=0.520 Sum_probs=29.1
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+.||.|+.|..|||..|++.+ .... ....++|+.|..+
T Consensus 18 g~ll~CD~C~~~fH~~Cl~pp--l~~~-P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 18 GELICCDGCPRAFHLACLSPP--LREI-PSGTWRCSSCLQA 55 (66)
T ss_dssp SSCEECSSCCCEECTTTSSSC--CSSC-CSSCCCCHHHHHT
T ss_pred CCEEEcCCCChhhcccccCCC--cCcC-CCCCeECccccCc
Confidence 579999999999999999841 1111 1258999999865
No 37
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.00072 Score=49.68 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=28.8
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN 176 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~ 176 (231)
.+.||.|+.|..+||..|++. +.....+-..++|+.|..
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~P--pl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 38 PNMQLLCDECNVAYHIYCLNP--PLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp STTEEECSSSCCEEETTSSSS--CCSSCCCSSCCCCTTTCC
T ss_pred CCCEEEcCCCCccccccccCC--CccCCCCCCCcCCcCccC
Confidence 579999999999999999983 121111223799999974
No 38
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=96.87 E-value=0.00032 Score=48.65 Aligned_cols=38 Identities=16% Similarity=0.428 Sum_probs=28.9
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+.||.|+.|..|||..|++.+ ... .....++|+.|..+
T Consensus 15 g~ll~Cd~C~~~fH~~Cl~pp--l~~-~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 15 GQLLMCDTCSRVYHLDCLDPP--LKT-IPKGMWICPRCQDQ 52 (60)
T ss_dssp SSCEECSSSSCEECGGGSSSC--CSS-CCCSCCCCHHHHHH
T ss_pred CcEEEcCCCCcCEECCcCCCC--cCC-CCCCceEChhccCh
Confidence 589999999999999999841 111 12258999999754
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.86 E-value=0.00018 Score=52.15 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=37.5
Q ss_pred ceeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 119 g~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
..-.+|+++..+ + .+.||.|+.|..|||..|++++ ..|+ ..++|+.|..+
T Consensus 17 ~~C~vC~~~~s~--~--~~~ll~CD~C~~~~H~~Cl~~~-~vP~----g~W~C~~C~~~ 66 (71)
T 2ku3_A 17 AVCSICMDGESQ--N--SNVILFCDMCNLAVHQECYGVP-YIPE----GQWLCRHCLQS 66 (71)
T ss_dssp CSCSSSCCCCCC--S--SSCEEECSSSCCEEEHHHHTCS-SCCS----SCCCCHHHHHH
T ss_pred CCCCCCCCCCCC--C--CCCEEECCCCCCccccccCCCC-cCCC----CCcCCccCcCc
Confidence 345678877421 1 5799999999999999999974 2333 57999999754
No 40
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=96.67 E-value=0.00047 Score=48.24 Aligned_cols=47 Identities=28% Similarity=0.627 Sum_probs=34.6
Q ss_pred ceeE-EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 119 GKYC-TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 119 g~YC-~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
..+| +|+++ +.||.|+.|..|||..|++.+ ... .....++|+.|..+
T Consensus 11 ~~~C~vC~~~---------g~ll~CD~C~~~fH~~Cl~p~--l~~-~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---------GEIILCDTCPRAYHMVCLDPD--MEK-APEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---------SSEEECSSSSCEEEHHHHCTT--CCS-CCCSSCCCTTGGGG
T ss_pred CCCCccCCCC---------CcEEECCCCChhhhhhccCCC--CCC-CCCCceECcccccc
Confidence 3566 48753 589999999999999999863 211 12358999999764
No 41
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=96.65 E-value=0.00094 Score=49.14 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=28.3
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCcccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN 176 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~ 176 (231)
.+.||.|+.|..+||..|++. .......-+.++|+.|+.
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~P--pL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDP--PLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSS--CCSSCCSSSCCCCTTTC-
T ss_pred CcceeEeCCCCCccCcccCCC--cccCCCCCCceECcCccc
Confidence 478999999999999999984 121222223499999974
No 42
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=96.65 E-value=0.0013 Score=45.96 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=29.2
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+.||.|+.|..+||..|++.+ .... ....++|+.|+.+
T Consensus 19 g~ll~Cd~C~~~fH~~Cl~pp--l~~~-p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 19 GELLCCDTCPSSYHIHCLNPP--LPEI-PNGEWLCPRCTCP 56 (61)
T ss_dssp SSCBCCSSSCCCBCSSSSSSC--CSSC-CSSCCCCTTTTTT
T ss_pred CCEEEcCCCCHHHcccccCCC--cCcC-CCCccCChhhcCc
Confidence 579999999999999999842 1111 2358999999865
No 43
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.26 E-value=0.0018 Score=49.66 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=33.0
Q ss_pred EeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 123 TCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 123 ~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+|+++.+ +..||+|+.|..|||..|++.+ .... .-..|+|+.|...
T Consensus 59 ~C~~~~~------~~~ll~Cd~C~~~yH~~Cl~pp--l~~~-P~g~W~C~~C~~c 104 (111)
T 2ysm_A 59 NCKQSGE------DSKMLVCDTCDKGYHTFCLQPV--MKSV-PTNGWKCKNCRIC 104 (111)
T ss_dssp TTCCCSC------CTTEEECSSSCCEEEGGGSSSC--CSSC-CSSCCCCHHHHCC
T ss_pred ccCccCC------CCCeeECCCCCcHHhHHhcCCc--cccC-CCCCcCCcCCcCc
Confidence 4776642 3689999999999999999741 1111 1257999999754
No 44
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=96.24 E-value=0.0017 Score=47.70 Aligned_cols=47 Identities=26% Similarity=0.646 Sum_probs=35.7
Q ss_pred ccceeecccCCCCCCCCceeeccccch-hcCCccccccccc--c-cCCCCCCC
Q psy16699 45 RQALYACLTCTPDICDPAGFCLACNYH-CHEGHNIVELYTK--R-CDCGNSKF 93 (231)
Q Consensus 45 rQ~~y~C~TC~~~~~~~~gvC~~Cs~~-CH~gH~lvel~~k--R-CDCG~~~~ 93 (231)
-..+|.|+||..+. .-.||..|-.. =|.+|++.-.... . ||||+...
T Consensus 14 ge~~Y~C~~C~~d~--tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~ea 64 (75)
T 3ny3_A 14 GEPTYSCRDCAVDP--TCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEA 64 (75)
T ss_dssp TCEEEEETTTBSST--TCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTT
T ss_pred CCEEEECccCCCCC--CeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHH
Confidence 35699999998743 56899999866 7999997644332 2 99999754
No 45
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=95.99 E-value=0.0024 Score=49.61 Aligned_cols=39 Identities=21% Similarity=0.472 Sum_probs=29.2
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
++.||.|+.|..|||..|++.+ ... .....++|+.|...
T Consensus 70 ~~~ll~Cd~C~~~yH~~Cl~pp--l~~-~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 70 DDQLLFCDDCDRGYHMYCLNPP--VAE-PPEGSWSCHLCWEL 108 (114)
T ss_dssp TTTEEECSSSCCEEETTTSSSC--CSS-CCSSCCCCHHHHHH
T ss_pred CCceEEcCCCCccccccccCCC--ccC-CCCCCeECccccch
Confidence 4789999999999999999841 111 12247999999754
No 46
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=95.91 E-value=0.0044 Score=46.27 Aligned_cols=55 Identities=27% Similarity=0.637 Sum_probs=38.9
Q ss_pred CCccccCcccccceeecccCCCCCCCCceeeccccch-hcCCcccccccccc-----cCCCCCCC
Q psy16699 35 NCTYSQGYMKRQALYACLTCTPDICDPAGFCLACNYH-CHEGHNIVELYTKR-----CDCGNSKF 93 (231)
Q Consensus 35 ~CTy~~gy~~rQ~~y~C~TC~~~~~~~~gvC~~Cs~~-CH~gH~lvel~~kR-----CDCG~~~~ 93 (231)
.|... +-+-..+|.|+||..+. .-.||..|-.. =|.+|++.-....| ||||+...
T Consensus 10 ~Cg~v--f~~ge~~Y~C~~C~~d~--tcvlC~~CF~~s~H~gH~~~~~~s~~~~gG~CDCGD~ea 70 (82)
T 3nis_A 10 NCGRK--FKIGEPLYRCHECGCDD--TCVLCIHCFNPKDHVNHHVCTDICTEFTSGICDCGDEEA 70 (82)
T ss_dssp CCCCB--CCTTCEEEEETTTBSST--TCCBCTTTCCGGGGTTSCEEEEECCSSEEEBCCTTCGGG
T ss_pred CCCCc--ccCCCEEEEeeccCCCC--CceEchhhCCCCCcCCceEEEEEecCCCCcEecCCCHHH
Confidence 46544 22235699999998753 56799999855 69999976544322 99998753
No 47
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.83 E-value=0.0027 Score=45.30 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=28.2
Q ss_pred ccceeccccccccccCCCCCC-CCCCCCCccccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLD-SPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~-~~~~~~~~~~~fiC~~C~~k 177 (231)
+.||.|+.|..|||..|++.+ ...| -..++|+.|...
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P----~g~W~C~~C~~~ 59 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGTSRP----GTGLRCRSCSGD 59 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTCCCC----SSSCCCTTTTTC
T ss_pred CeEEECCCCCCceecccCCCccCcCC----CCCEECccccCC
Confidence 569999999999999999641 1222 246999999754
No 48
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.80 E-value=0.004 Score=48.48 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=31.9
Q ss_pred ceeEEeCCCCCCCCCCCCccceecc--ccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699 119 GKYCTCARPYPDEENPNCDEMIQCA--LCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI 175 (231)
Q Consensus 119 g~YC~C~~pYpdpe~~~~~~MIQC~--~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~ 175 (231)
..||.+-+. .+.||.|+ .|..|||..||++. ..|. ..++|+.|.
T Consensus 15 ~~~C~~C~~--------~G~ll~CD~~~Cp~~fH~~Cl~L~-~~P~----g~W~Cp~c~ 60 (107)
T 4gne_A 15 EDYCFQCGD--------GGELVMCDKKDCPKAYHLLCLNLT-QPPY----GKWECPWHQ 60 (107)
T ss_dssp CSSCTTTCC--------CSEEEECCSTTCCCEECTGGGTCS-SCCS----SCCCCGGGB
T ss_pred CCCCCcCCC--------CCcEeEECCCCCCcccccccCcCC-cCCC----CCEECCCCC
Confidence 356765442 36899999 89999999999973 2333 468888764
No 49
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=95.77 E-value=0.0058 Score=53.39 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=25.5
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
.+.|+.|+.|..+||..|++. +......-..++|+.|...
T Consensus 186 ~~~lL~CD~C~~~yH~~CL~P--PL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 186 PDKQLMCDECDMAFHIYCLDP--PLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp --CCEECSSSCCEECSCC--C--CCCSCCSSSCCCCGGGC--
T ss_pred CCCeEEcCCCCcceeCccCCC--CcccCCCCCCCCCcCCcCc
Confidence 479999999999999999984 2222122237999999753
No 50
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=95.59 E-value=0.0078 Score=46.43 Aligned_cols=38 Identities=24% Similarity=0.483 Sum_probs=28.7
Q ss_pred CccceeccccccccccCCCCCC-CCCCCCCccccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLD-SPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~-~~~~~~~~~~~fiC~~C~~k 177 (231)
++.||.|+.|..+||..|+..+ ...| -..++|+.|..+
T Consensus 74 ~~~ll~Cd~C~~~yH~~Cl~p~l~~~P----~~~W~C~~C~~k 112 (112)
T 3v43_A 74 ADNMLFCDSCDRGFHMECCDPPLTRMP----KGMWICQICRPR 112 (112)
T ss_dssp TCCCEECTTTCCEECGGGCSSCCSSCC----SSCCCCTTTSCC
T ss_pred ccceEEcCCCCCeeecccCCCCCCCCC----CCCeECCCCCCc
Confidence 4689999999999999999531 1122 237999999754
No 51
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=95.14 E-value=0.0082 Score=44.79 Aligned_cols=53 Identities=15% Similarity=0.420 Sum_probs=37.3
Q ss_pred eeEEeCCCCCCCCCCCCccceeccccccccccCCCCCCCCCCC---CCcccccccccccccC
Q psy16699 120 KYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPD---GEDYSEMSCASCINMY 178 (231)
Q Consensus 120 ~YC~C~~pYpdpe~~~~~~MIQC~~CEDWFH~~Clg~~~~~~~---~~~~~~fiC~~C~~k~ 178 (231)
.--+|++....+ .+.||.|+.|...||..|++. .... ...-..++|+.|+.+.
T Consensus 18 ~C~vC~~~~~~~----~~~ll~CD~C~~~yH~~Cl~P--pl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 18 ACVVCRQMTVAS----GNQLVECQECHNLYHQDCHKP--QVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp SCSSSCCCCCCT----TCCEEECSSSCCEEETTTSSS--CCCHHHHHCTTCCCCCHHHHHHH
T ss_pred cCCCCCCCCCCC----CCceEECCCCCCeEcCccCCC--cccccccCCCCCCeeCccccchh
Confidence 344688775311 468999999999999999985 2221 1234689999998654
No 52
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=94.26 E-value=0.029 Score=46.28 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=29.2
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
+.||.|+.|..|||..|++.+ ... ..-..++|+.|..+.
T Consensus 14 g~ll~Cd~C~~~~H~~C~~p~--l~~-~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 14 GELLCCEKCPKVFHLSCHVPT--LTN-FPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCEECSSSSCEECTTTSSSC--CSS-CCSSCCCCTTTSCSS
T ss_pred CeeeecCCCCcccCccccCCC--CCC-CCCCCEECccccCcc
Confidence 569999999999999999641 111 123479999998764
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=94.21 E-value=0.024 Score=47.78 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=29.3
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCcccccccccccccC
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMY 178 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~ 178 (231)
+.||.|+.|..|||..|++.+ ... ..-..++|+.|....
T Consensus 17 g~ll~Cd~C~~~~H~~Cl~p~--l~~-~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 17 GDLLCCEKCPKVFHLTCHVPT--LLS-FPSGDWICTFCRDIG 55 (207)
T ss_dssp EEEEECSSSSCEECTTTSSSC--CSS-CCSSCCCCTTTSCSS
T ss_pred CceEEcCCCCCccCCccCCCC--CCC-CCCCCEEeCceeCcc
Confidence 569999999999999999641 111 123469999998764
No 54
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=91.77 E-value=0.13 Score=39.17 Aligned_cols=36 Identities=17% Similarity=0.467 Sum_probs=26.2
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI 175 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~ 175 (231)
..||.|..|...||..||++. ... .....+.|+.|.
T Consensus 20 ~~ll~C~~C~~~~H~~Cl~~~--~~~-~~~~~W~C~~C~ 55 (111)
T 2ysm_A 20 LDQFFCTTCGQHYHGMCLDIA--VTP-LKRAGWQCPECK 55 (111)
T ss_dssp TTSEECSSSCCEECTTTTTCC--CCT-TTSTTCCCTTTC
T ss_pred cCCeECCCCCCCcChHHhCCc--ccc-ccccCccCCcCC
Confidence 578999999999999999873 211 123567777664
No 55
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.52 E-value=0.23 Score=37.29 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=28.1
Q ss_pred ccceeccccccccccCCCCCCCCCCCCCccccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k 177 (231)
+.||.|+.|..-||..|+.. +... -.-..++|+.|...
T Consensus 35 g~LL~CD~C~~~fH~~Cl~P--pL~~-~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 35 GDLVMCNQCEFCFHLDCHLP--ALQD-VPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCEECTTSSCEECTTSSST--TCCC-CCSSSCCCCSCCCC
T ss_pred CCEEECCCCCCceecccCCC--CCCC-CcCCCcCCccccCC
Confidence 46999999999999999943 1111 12257999999865
No 56
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.18 E-value=0.018 Score=44.42 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=26.7
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCccccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI 175 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C~ 175 (231)
.+.||.|..|...||..||++.+.......-..+.|+.|.
T Consensus 23 ~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred chhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 4689999999999999999872111111123356666663
No 57
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=87.84 E-value=0.33 Score=40.54 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=28.2
Q ss_pred ccceeccccccccccCCCCCC-CCCCCCCccccccccccccc
Q psy16699 137 DEMIQCALCEDWFHSGHLGLD-SPIPDGEDYSEMSCASCINM 177 (231)
Q Consensus 137 ~~MIQC~~CEDWFH~~Clg~~-~~~~~~~~~~~fiC~~C~~k 177 (231)
+.|+.|+.|...||..|+..+ ...| -..++|+.|..+
T Consensus 12 g~ll~Cd~C~~~~H~~Cl~p~l~~~p----~g~W~C~~C~~~ 49 (189)
T 2ro1_A 12 GDLVMCNQCEFCFHLDCHLPALQDVP----GEEWSCSLCHVL 49 (189)
T ss_dssp SSCCCCTTTCCBCCSTTSTTCCSSCC----CTTCCTTTTSCS
T ss_pred CceeECCCCCchhccccCCCCcccCC----CCCCCCcCccCC
Confidence 568999999999999999531 1122 357999999866
No 58
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=84.98 E-value=0.099 Score=40.32 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=25.9
Q ss_pred CccceeccccccccccCCCCCCCCCCCCCcccccccccc
Q psy16699 136 CDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASC 174 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Clg~~~~~~~~~~~~~fiC~~C 174 (231)
.+.||.|..|...||..||++.........-..+.|+.|
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 479999999999999999987311000112235666666
No 59
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=51.55 E-value=5.4 Score=25.49 Aligned_cols=28 Identities=25% Similarity=0.596 Sum_probs=22.7
Q ss_pred eeecccCCCCCCCCceeeccccchhcCCcccccc
Q psy16699 48 LYACLTCTPDICDPAGFCLACNYHCHEGHNIVEL 81 (231)
Q Consensus 48 ~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel 81 (231)
-|-|.+|. .-||..|...=|.+|.++.+
T Consensus 18 ~lfC~~~~------~~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 18 VLFCESCD------TLTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp CEEETTTT------EEECHHHHHTTTTTCCEEET
T ss_pred EEEeCCCC------EEEecccCCCcCCCCceecH
Confidence 35578884 57999999999999998765
No 60
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=47.59 E-value=6.6 Score=24.97 Aligned_cols=27 Identities=30% Similarity=0.746 Sum_probs=21.3
Q ss_pred eecccCCCCCCCCceeecccc-chhcCCcccccc
Q psy16699 49 YACLTCTPDICDPAGFCLACN-YHCHEGHNIVEL 81 (231)
Q Consensus 49 y~C~TC~~~~~~~~gvC~~Cs-~~CH~gH~lvel 81 (231)
+-|.+|. ..||..|. ..=|.+|.++.+
T Consensus 19 lfC~~d~------~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 19 IYCLTCE------VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp EEETTTT------EEECHHHHHHSTTTTSCEEEC
T ss_pred EEcCCCC------eeEcccccCCCcCCCCcEEeC
Confidence 4578874 58999998 458999998765
No 61
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=42.41 E-value=9.4 Score=24.67 Aligned_cols=28 Identities=32% Similarity=0.696 Sum_probs=21.9
Q ss_pred eeecccCCCCCCCCceeeccccc-hhcCCcccccc
Q psy16699 48 LYACLTCTPDICDPAGFCLACNY-HCHEGHNIVEL 81 (231)
Q Consensus 48 ~y~C~TC~~~~~~~~gvC~~Cs~-~CH~gH~lvel 81 (231)
-|-|.+|. .-||..|.. .=|.+|.++.+
T Consensus 19 ~lfC~~d~------~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 19 SLFCYEDQ------EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp CEEESSSC------SEECHHHHTSSTTTTSCEEEC
T ss_pred eEEeCCCC------eEEeccccCCCCCCCCcEeeH
Confidence 34567774 589999997 89999998765
No 62
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=40.68 E-value=9.4 Score=23.39 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=17.2
Q ss_pred Cceeeccccc-hhcCCcccccc
Q psy16699 61 PAGFCLACNY-HCHEGHNIVEL 81 (231)
Q Consensus 61 ~~gvC~~Cs~-~CH~gH~lvel 81 (231)
..-||..|.. .=|.+|.++.+
T Consensus 21 ~~~iC~~C~~~~~H~~H~~~~l 42 (42)
T 1fre_A 21 GTLSCVICRDSLKHASHNFLPI 42 (42)
T ss_dssp SSSSCCTTSSCSSCTTCCCCCC
T ss_pred CeEEeccCCCCCCCCCCcEecC
Confidence 3579999998 79999988653
No 63
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=40.16 E-value=10 Score=26.66 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=23.2
Q ss_pred eeecccCCCCCCCCceeeccccc-hhcCCcccccccc
Q psy16699 48 LYACLTCTPDICDPAGFCLACNY-HCHEGHNIVELYT 83 (231)
Q Consensus 48 ~y~C~TC~~~~~~~~gvC~~Cs~-~CH~gH~lvel~~ 83 (231)
-|-|.+|. .-||..|.. .=|.+|.++.+-.
T Consensus 30 ~lfC~~d~------~~iC~~C~~~~~H~~H~~~~l~e 60 (84)
T 2dja_A 30 NMYCVSDD------QLICALCKLVGRHRDHQVASLND 60 (84)
T ss_dssp CEEETTTT------EEECHHHHHTSTTTTCCBCCCCS
T ss_pred cEEcCCCC------ceEcccCcCCCCCCCCCccCHHH
Confidence 34577774 589999998 8999999876543
No 64
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=39.85 E-value=8.8 Score=25.57 Aligned_cols=28 Identities=29% Similarity=0.625 Sum_probs=21.7
Q ss_pred eecccCCCCCCCCceeeccccc-hhcCCccccccc
Q psy16699 49 YACLTCTPDICDPAGFCLACNY-HCHEGHNIVELY 82 (231)
Q Consensus 49 y~C~TC~~~~~~~~gvC~~Cs~-~CH~gH~lvel~ 82 (231)
|-|.+|. .-||..|.. .=|.+|.++.+-
T Consensus 21 lfC~~d~------~~iC~~C~~~~~H~~H~~~~l~ 49 (64)
T 2d8u_A 21 IYCLTCE------VPTCSMCKVFGIHKACEVAPLQ 49 (64)
T ss_dssp SEESSSC------CCCCSHHHHSSSTTSSCEECTT
T ss_pred eEcCcCC------ceeCccccCCCcCCCCCeeCHH
Confidence 4577774 469999986 599999987654
No 65
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=34.94 E-value=14 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.543 Sum_probs=22.2
Q ss_pred eeecccCCCCCCCCceeeccccchhcCCcccccc
Q psy16699 48 LYACLTCTPDICDPAGFCLACNYHCHEGHNIVEL 81 (231)
Q Consensus 48 ~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel 81 (231)
-|-|.+|. .-||..|...=|.+|.++.+
T Consensus 29 ~lfC~~d~------~~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 29 ELFCQTDQ------TCICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp CEEESSSC------CEECHHHHHTTTSSSCEEEH
T ss_pred EEEeCCCC------eEEccccCCCCCCCCCEecH
Confidence 34577774 47999999999999988764
No 66
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=33.17 E-value=19 Score=27.03 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=32.6
Q ss_pred CccceeccccccccccCCC---CCCCC------CCCCCcccccccccccccCcccc
Q psy16699 136 CDEMIQCALCEDWFHSGHL---GLDSP------IPDGEDYSEMSCASCINMYPVLK 182 (231)
Q Consensus 136 ~~~MIQC~~CEDWFH~~Cl---g~~~~------~~~~~~~~~fiC~~C~~k~~~L~ 182 (231)
.+.|++|-+|..=||..|+ |.... ...+..-..+.|+.|..-+..|.
T Consensus 26 ~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lLLt 81 (89)
T 1wil_A 26 AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLT 81 (89)
T ss_dssp SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSSSC
T ss_pred ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhhcc
Confidence 4788999999999999998 32111 12345667889999965555444
No 67
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.75 E-value=20 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=21.1
Q ss_pred eecccCCCCCCCCceeeccccc-hhcCCcccccc
Q psy16699 49 YACLTCTPDICDPAGFCLACNY-HCHEGHNIVEL 81 (231)
Q Consensus 49 y~C~TC~~~~~~~~gvC~~Cs~-~CH~gH~lvel 81 (231)
|-|.++ ..-||..|.. .=|.+|.++.+
T Consensus 26 lfC~~d------~~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 26 LFCQED------GKVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp EEETTT------CSEECHHHHTSTTTTTCCEEEC
T ss_pred eecCCC------CcEEecccCCCCcCCCCcEeeH
Confidence 446666 3589999998 89999998765
No 68
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.09 E-value=16 Score=24.22 Aligned_cols=21 Identities=29% Similarity=0.751 Sum_probs=17.5
Q ss_pred Cceeeccccc-hhcCCcccccc
Q psy16699 61 PAGFCLACNY-HCHEGHNIVEL 81 (231)
Q Consensus 61 ~~gvC~~Cs~-~CH~gH~lvel 81 (231)
..-||..|.. .-|.+|.++.+
T Consensus 36 ~~~iC~~C~~~~eH~~H~~~~l 57 (57)
T 2egm_A 36 EEAICVVCRESRSHKQHSVVPL 57 (57)
T ss_dssp TEEECHHHHHSHHHHSSCEECC
T ss_pred CcEEecccCCCCCCCCCcEecC
Confidence 4689999997 79999998653
No 69
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=26.60 E-value=37 Score=28.34 Aligned_cols=24 Identities=17% Similarity=0.039 Sum_probs=20.6
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHc
Q psy16699 5 EGTVTLGDVLALQDHLEESAVAVL 28 (231)
Q Consensus 5 ~~~vt~~d~l~~q~~le~eA~~~l 28 (231)
...+|.+++|++|++|-+.|++-.
T Consensus 113 ~sg~~~Eel~~~Qqelf~~Ar~~~ 136 (179)
T 1jfi_B 113 NLGIPEEELLRQQQELFAKARQQQ 136 (179)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999988644
No 70
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=24.06 E-value=29 Score=24.85 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=21.1
Q ss_pred eecccCCCCCCCCceeeccccc-hhcCCcccccc
Q psy16699 49 YACLTCTPDICDPAGFCLACNY-HCHEGHNIVEL 81 (231)
Q Consensus 49 y~C~TC~~~~~~~~gvC~~Cs~-~CH~gH~lvel 81 (231)
|-|.+| ..-||..|.. .=|.+|.++.+
T Consensus 72 ~fC~~~------~~~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 72 MYCVTD------DQLICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp EEETTT------TEEECHHHHHHTTTSSSCBCCC
T ss_pred EECCCC------CCccchhcCCCCCcCCCCeecC
Confidence 446666 4589999997 79999998765
No 71
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=22.06 E-value=24 Score=26.55 Aligned_cols=41 Identities=32% Similarity=0.621 Sum_probs=25.6
Q ss_pred cceeecccCCCCCCCCceeeccccchhcCCcccccc-cccc---cCCCCCC
Q psy16699 46 QALYACLTCTPDICDPAGFCLACNYHCHEGHNIVEL-YTKR---CDCGNSK 92 (231)
Q Consensus 46 Q~~y~C~TC~~~~~~~~gvC~~Cs~~CH~gH~lvel-~~kR---CDCG~~~ 92 (231)
=.+|.|.+|+-....+...|.. .+|+|.-. -.|| |.|++..
T Consensus 13 ~~av~C~~C~yt~~~~~~~C~~------~~H~l~~~~a~KRFFkC~C~~Rt 57 (92)
T 2kwq_A 13 CRVVTCKTCKYTHFKPKETCVS------ENHDFHWHNGVKRFFKCPCGNRT 57 (92)
T ss_dssp EEEEEETTTCCEESSCCHHHHH------TTCCEEEEEEECEEEECTTSCEE
T ss_pred EEEEEccCCcceecCcchhHHh------cCCceEEEeeeEEEEECCCCCce
Confidence 4688999997554444445544 56776432 3366 9988754
No 72
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.09 E-value=26 Score=21.70 Aligned_cols=12 Identities=17% Similarity=0.684 Sum_probs=9.8
Q ss_pred cccccccccccC
Q psy16699 167 SEMSCASCINMY 178 (231)
Q Consensus 167 ~~fiC~~C~~k~ 178 (231)
+.|+||.|++..
T Consensus 4 EGFiCP~C~~~l 15 (34)
T 3mjh_B 4 EGFICPQCMKSL 15 (34)
T ss_dssp EEEECTTTCCEE
T ss_pred cccCCcHHHHHc
Confidence 469999998764
No 73
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.22 E-value=13 Score=26.52 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=30.7
Q ss_pred eEEeCCCCCCCCCCCCccceeccccc-----cccccCCCCCCCCCCCCCcccccccccccccCccccccc
Q psy16699 121 YCTCARPYPDEENPNCDEMIQCALCE-----DWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPVLKLYP 185 (231)
Q Consensus 121 YC~C~~pYpdpe~~~~~~MIQC~~CE-----DWFH~~Clg~~~~~~~~~~~~~fiC~~C~~k~~~L~~y~ 185 (231)
--||...|. + ++.+| .-|. -+||..||.. . ...-....||.|.....+-.+++
T Consensus 18 C~IC~~~~~-~----~~~l~--~pC~C~Gs~h~fH~~Cl~~---W--l~~~~~~~CplCr~~~~~~~~~~ 75 (80)
T 2d8s_A 18 CRICHCEGD-D----ESPLI--TPCHCTGSLHFVHQACLQQ---W--IKSSDTRCCELCKYEFIMETKLS 75 (80)
T ss_dssp CSSSCCCCC-S----SSCEE--CSSSCCSSSCCEETTHHHH---H--HHHHCCSBCSSSCCBCCCCCCSC
T ss_pred CeEcCcccc-C----CCeeE--eccccCCcCCeeCHHHHHH---H--HhhCCCCCCCCCCCeeecCcccC
Confidence 347777763 2 23344 3353 8999999952 0 01112468999987765544443
Done!