RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16699
         (231 letters)



>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 79

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASC 174
           YC C +PY          MI+C LC+DWFH   +G+     +  D     C  C
Sbjct: 14  YCLCRQPYNV-----NHFMIECGLCQDWFHGSCVGI--EEENAVDIDIYHCPDC 60


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
           Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 32.7 bits (74), Expect = 0.005
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGED--YSEMSCASC 174
           YC C +P+ +        MI C  CE+WFH   +G+        +    +  C +C
Sbjct: 18  YCICRQPHNN------RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67


>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 72

 Score = 31.5 bits (71), Expect = 0.013
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 8/55 (14%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCI 175
            C C     D      + M+ C  C  W H+  +G+++       +    C  CI
Sbjct: 18  DCKCGTKDDDG-----ERMLACDGCGVWHHTRCIGINNADALPSKF---LCFRCI 64


>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 64

 Score = 26.9 bits (59), Expect = 0.50
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 119 GKYCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCIN 176
           G+   C   Y  +E       I C LCE WFH   + +       E   +  C SC N
Sbjct: 7   GQCGACGESYAADEF-----WICCDLCEMWFHGKCVKI--TPARAEHIKQYKCPSCSN 57


>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 216

 Score = 28.6 bits (63), Expect = 0.54
 Identities = 27/200 (13%), Positives = 46/200 (23%), Gaps = 36/200 (18%)

Query: 6   GTVTLGDVLALQDHLEESAVAVLGAAD-----DKNCTYSQGYMKRQALYACLTCTPDICD 60
           GTV       LQ  L ++ VA  G AD     +    Y+ G                  D
Sbjct: 18  GTVDYRTAWQLQRELADARVA--GGADTLLLLEHPAVYTAGRRTETHERPIDGTPVVDTD 75

Query: 61  PAGFCLACNYHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTYNQNFKGK 120
             G           G+ I+ L                      +   ++           
Sbjct: 76  RGGKITWHGPGQLVGYPIIGLAEPL-----------DVVNYVRRLEESLIQVCADLGLHA 124

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGEDYSEMSCASCINMYPV 180
                R           ++    +      + H                     +N    
Sbjct: 125 GRVDGRSGVWLPGRPARKVAAIGVRVSRATTLH------------------GFALNCDCD 166

Query: 181 LKLYPHLLECPIKDKDVSSI 200
           L  +  ++ C I D  V+S+
Sbjct: 167 LAAFTAIVPCGISDAAVTSL 186


>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 78

 Score = 27.0 bits (59), Expect = 0.61
 Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 4/45 (8%)

Query: 121 YCTCARPYPDEENPNCDEMIQCALCEDWFHSGHLGLDSPIPDGED 165
            C C      +    C+       C  W H G + L     DG  
Sbjct: 18  RCVCGNSLETDSMIQCE----DPRCHVWQHVGCVILPDKPMDGNP 58


>d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 114

 Score = 26.0 bits (57), Expect = 2.4
 Identities = 17/104 (16%), Positives = 24/104 (23%), Gaps = 8/104 (7%)

Query: 12  DVLALQDHLEESAVAVL--GAADDKNCTYSQGYMKRQALYACLTCTPDICDPAGFCLACN 69
           D   +   L E  V V   G   D         ++   +Y       D  D AG  L   
Sbjct: 15  DKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLA----D-ADEAGEKLR-R 68

Query: 70  YHCHEGHNIVELYTKRCDCGNSKFGEKKCNLEPNKDALNVNNTY 113
                      LY  R     +            +   +V    
Sbjct: 69  QFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIES 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.460 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 954,109
Number of extensions: 47161
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 34
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)