Query psy1670
Match_columns 68
No_of_seqs 26 out of 28
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 19:47:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j1d_C Troponin I, TNI; THIN f 99.0 4.9E-10 1.7E-14 76.0 4.8 34 34-67 6-39 (133)
2 1j1e_C Troponin I, TNI; THIN f 98.9 7.6E-10 2.6E-14 78.3 4.8 34 34-67 6-39 (180)
3 1ytz_I Troponin I; muscle, THI 98.7 4E-09 1.4E-13 74.8 2.7 34 34-67 4-37 (182)
4 1a2x_B Troponin I; muscle cont 97.7 1.1E-05 3.9E-10 46.8 1.0 31 37-67 7-37 (47)
5 2kta_A Putative helicase; PSI, 45.3 22 0.00074 21.1 3.1 16 35-50 46-61 (74)
6 3itf_A Periplasmic adaptor pro 27.9 1.3E+02 0.0044 19.6 6.4 22 34-55 114-135 (145)
7 1t3w_A DNA primase; DNAG, DNA- 27.2 99 0.0034 19.2 4.2 30 23-54 116-145 (148)
8 3nr7_A DNA-binding protein H-N 23.0 1.1E+02 0.0039 18.6 3.7 17 11-27 54-70 (86)
9 1xao_A YDJ1, mitochondrial pro 21.5 44 0.0015 20.5 1.6 16 36-51 81-96 (121)
10 2l2l_B Methyl-CPG-binding doma 19.3 1.1E+02 0.0036 16.7 2.7 15 16-30 17-31 (36)
No 1
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=98.98 E-value=4.9e-10 Score=75.99 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=31.8
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670 34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV 67 (68)
Q Consensus 34 ~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~ 67 (68)
.++|||||+||++||.||+++|+|+|++||++++
T Consensus 6 ~~k~~mt~~Rk~~Lk~lll~kA~e~l~kE~e~k~ 39 (133)
T 1j1d_C 6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERR 39 (133)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999875
No 2
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=98.94 E-value=7.6e-10 Score=78.35 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=31.9
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670 34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV 67 (68)
Q Consensus 34 ~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~ 67 (68)
.++|||||+||++||.||+++|||+|++||++++
T Consensus 6 ~kk~~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~ 39 (180)
T 1j1e_C 6 KKKSKISASRKLQLKTLLLQIAKQELEREAEERR 39 (180)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999875
No 3
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=98.73 E-value=4e-09 Score=74.85 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=31.4
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670 34 AKKGFMTPERKKKLRLLLRKKAAEELKKEQERKV 67 (68)
Q Consensus 34 ~kkGflTpErKKkLr~Llm~KAAEelK~eq~~k~ 67 (68)
.++|||||+||++||.||+++|||+|++||++++
T Consensus 4 ~~k~kmt~~Rk~~Lk~lll~kA~e~L~~E~e~k~ 37 (182)
T 1ytz_I 4 EKKRRAATARRQHLKSAMLQLAVTEIEKEAAAKE 37 (182)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999875
No 4
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=97.65 E-value=1.1e-05 Score=46.76 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=25.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1670 37 GFMTPERKKKLRLLLRKKAAEELKKEQERKV 67 (68)
Q Consensus 37 GflTpErKKkLr~Llm~KAAEelK~eq~~k~ 67 (68)
.+||+.||..|+.|++++|+++|++|+..++
T Consensus 7 ~kms~sRK~~LKslmL~~A~~~Le~E~~~k~ 37 (47)
T 1a2x_B 7 NRAITARRQHLKSVMLQIAATELEKEEGRRE 37 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999999999887654
No 5
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=45.27 E-value=22 Score=21.12 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.5
Q ss_pred hccCCCHHHHHHHHHH
Q psy1670 35 KKGFMTPERKKKLRLL 50 (68)
Q Consensus 35 kkGflTpErKKkLr~L 50 (68)
+.|-||+||...|-.|
T Consensus 46 k~g~Ls~eRi~~L~~l 61 (74)
T 2kta_A 46 KQGKLPNDRRLLLDKI 61 (74)
T ss_dssp HHTCCCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHc
Confidence 5688999999998765
No 6
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=27.89 E-value=1.3e+02 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=16.8
Q ss_pred hhccCCCHHHHHHHHHHHHHHH
Q psy1670 34 AKKGFMTPERKKKLRLLLRKKA 55 (68)
Q Consensus 34 ~kkGflTpErKKkLr~Llm~KA 55 (68)
.--..||||-+.+|..+.-+..
T Consensus 114 qiy~vLTPEQk~ql~e~~~~r~ 135 (145)
T 3itf_A 114 QMYRLLTPEQQAVLNEKHQQRM 135 (145)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHH
Confidence 3456799999999998765543
No 7
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication, replication; HET: DNA MSE; 2.80A {Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Probab=27.21 E-value=99 Score=19.22 Aligned_cols=30 Identities=27% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Q psy1670 23 KRMEEASKAKKAKKGFMTPERKKKLRLLLRKK 54 (68)
Q Consensus 23 krleea~~~kK~kkGflTpErKKkLr~Llm~K 54 (68)
.|+++-- +|-.-.| ||++-|..|+.|+...
T Consensus 116 ~r~~~L~-~k~~~~~-Lt~eEk~el~~Ll~~~ 145 (148)
T 1t3w_A 116 LRQEELI-ARERTHG-LSNEERLELWTLNQEL 145 (148)
T ss_dssp HHHHHHH-HHHTTTC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HhhhccC-CCHHHHHHHHHHHHHH
Confidence 3444433 2333446 9999999999999764
No 8
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=22.96 E-value=1.1e+02 Score=18.55 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1670 11 QAEIDRKRAEVRKRMEE 27 (68)
Q Consensus 11 ~~E~erKkAEvrkrlee 27 (68)
++|+++|-++.+.-|.+
T Consensus 54 ~~er~~Kl~~~~e~l~~ 70 (86)
T 3nr7_A 54 VEERTRKLQQYREMLIA 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444455555554444
No 9
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=21.52 E-value=44 Score=20.48 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.6
Q ss_pred ccCCCHHHHHHHHHHH
Q psy1670 36 KGFMTPERKKKLRLLL 51 (68)
Q Consensus 36 kGflTpErKKkLr~Ll 51 (68)
.+|||++.+..|++|+
T Consensus 81 ~~~ls~~q~~~l~~l~ 96 (121)
T 1xao_A 81 NHFTSEENLKKLEEIL 96 (121)
T ss_dssp TTCSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHc
Confidence 3579999999999886
No 10
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=19.32 E-value=1.1e+02 Score=16.70 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy1670 16 RKRAEVRKRMEEASK 30 (68)
Q Consensus 16 rKkAEvrkrleea~~ 30 (68)
++=..+|+||+++-.
T Consensus 17 ~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 17 ERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345678999999854
Done!