Query psy1670
Match_columns 68
No_of_seqs 26 out of 28
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 19:47:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1670.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1670hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t3wa_ a.236.1.1 (A:) DNA pri 29.3 27 0.002 19.6 3.3 21 34-54 112-132 (134)
2 d1t15a1 c.15.1.3 (A:1649-1757) 19.2 41 0.003 18.2 2.6 18 36-54 7-24 (109)
3 d2amxa1 c.1.9.1 (A:20-376) Ade 15.1 42 0.0031 21.7 2.2 16 35-50 340-355 (357)
4 d2ddha2 a.29.3.2 (A:475-655) P 12.8 72 0.0052 19.1 2.7 19 35-53 102-120 (181)
5 d2hepa1 a.2.21.1 (A:1-42) Hypo 12.7 1E+02 0.0073 15.9 3.8 22 22-45 7-28 (42)
6 d2sasa_ a.39.1.5 (A:) Sarcopla 12.5 72 0.0052 17.1 2.4 13 39-51 2-14 (185)
7 d1uw0a_ g.39.1.12 (A:) DNA lig 11.6 91 0.0066 17.8 2.8 18 35-52 76-95 (117)
8 d1s0ya_ d.80.1.1 (A:) Trans-3- 11.2 1E+02 0.0076 15.3 3.6 23 36-59 9-31 (62)
9 d1pzga2 d.162.1.1 (A:164-334) 10.6 1.4E+02 0.01 16.8 3.5 21 39-64 146-166 (174)
10 d1c07a_ a.39.1.6 (A:) Eps15 {H 10.3 83 0.0061 16.5 2.1 15 38-52 3-17 (95)
No 1
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.34 E-value=27 Score=19.58 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.4
Q ss_pred hhccCCCHHHHHHHHHHHHHH
Q psy1670 34 AKKGFMTPERKKKLRLLLRKK 54 (68)
Q Consensus 34 ~kkGflTpErKKkLr~Llm~K 54 (68)
...|-||.+-|..|+.|+++.
T Consensus 112 ~~~~~Lt~eEk~eL~~L~~~l 132 (134)
T d1t3wa_ 112 ERTHGLSNEERLELWTLNQEL 132 (134)
T ss_dssp HTTTCCCHHHHHHHHHHHHHT
T ss_pred hccCCCCHHHHHHHHHHHHHh
Confidence 333449999999999999763
No 2
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.21 E-value=41 Score=18.17 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=14.4
Q ss_pred ccCCCHHHHHHHHHHHHHH
Q psy1670 36 KGFMTPERKKKLRLLLRKK 54 (68)
Q Consensus 36 kGflTpErKKkLr~Llm~K 54 (68)
.| |+|+.++.|+.++.+.
T Consensus 7 SG-l~~~e~~~l~~~i~~~ 24 (109)
T d1t15a1 7 SG-LTPEEFMLVYKFARKH 24 (109)
T ss_dssp ES-CCHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHc
Confidence 36 7899999999988754
No 3
>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}
Probab=15.10 E-value=42 Score=21.72 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=14.3
Q ss_pred hccCCCHHHHHHHHHH
Q psy1670 35 KKGFMTPERKKKLRLL 50 (68)
Q Consensus 35 kkGflTpErKKkLr~L 50 (68)
...|++++.|..||.+
T Consensus 340 ~~sF~~~~~K~~l~~~ 355 (357)
T d2amxa1 340 EKSFVSDDVKSELKAL 355 (357)
T ss_dssp HHCCSCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHh
Confidence 5789999999999976
No 4
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.83 E-value=72 Score=19.07 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=15.3
Q ss_pred hccCCCHHHHHHHHHHHHH
Q psy1670 35 KKGFMTPERKKKLRLLLRK 53 (68)
Q Consensus 35 kkGflTpErKKkLr~Llm~ 53 (68)
-.|+|||+.-+.||..+..
T Consensus 102 ~~g~ls~~q~~~i~~~i~~ 120 (181)
T d2ddha2 102 EGSIITGAQLSQVNARILE 120 (181)
T ss_dssp HTTSSCHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHH
Confidence 4689999999998876653
No 5
>d2hepa1 a.2.21.1 (A:1-42) Hypothetical protein YnzC {Bacillus subtilis [TaxId: 1423]}
Probab=12.66 E-value=1e+02 Score=15.90 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhccCCCHHHHH
Q psy1670 22 RKRMEEASKAKKAKKGFMTPERKK 45 (68)
Q Consensus 22 rkrleea~~~kK~kkGflTpErKK 45 (68)
-.|+-+-+++.|. .| |||+.+.
T Consensus 7 i~RINeLakK~K~-~g-LT~~E~~ 28 (42)
T d2hepa1 7 IARINELAAKAKA-GV-ITEEEKA 28 (42)
T ss_dssp HHHHHHHHHHHHH-HC-CCHHHHH
T ss_pred HHHHHHHHHHhhc-cC-CCHHHHH
Confidence 3567777654444 55 9998764
No 6
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]}
Probab=12.47 E-value=72 Score=17.09 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHH
Q psy1670 39 MTPERKKKLRLLL 51 (68)
Q Consensus 39 lTpErKKkLr~Ll 51 (68)
||.+.++++|.+.
T Consensus 2 lt~~q~~~i~~~F 14 (185)
T d2sasa_ 2 LNDFQKQKIKFTF 14 (185)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 7777777777665
No 7
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.60 E-value=91 Score=17.76 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=14.9
Q ss_pred hccC--CCHHHHHHHHHHHH
Q psy1670 35 KKGF--MTPERKKKLRLLLR 52 (68)
Q Consensus 35 kkGf--lTpErKKkLr~Llm 52 (68)
-.|| |++|-+.+|+.+|.
T Consensus 76 i~G~~~L~~eDq~~i~~~i~ 95 (117)
T d1uw0a_ 76 LEGWEELEDNEKEQITQHIA 95 (117)
T ss_dssp SBSTTTSCHHHHHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHH
Confidence 3567 89999999999875
No 8
>d1s0ya_ d.80.1.1 (A:) Trans-3-chloroacrylic acid dehalogenase alpha-subunit, CaaD1 {Pseudomonas pavonaceae [TaxId: 47881]}
Probab=11.18 E-value=1e+02 Score=15.25 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=18.7
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHH
Q psy1670 36 KGFMTPERKKKLRLLLRKKAAEEL 59 (68)
Q Consensus 36 kGflTpErKKkLr~Llm~KAAEel 59 (68)
.| .|.|.|+.|=..|..-.++.+
T Consensus 9 ~G-rt~eqK~~l~~~it~~~~~~~ 31 (62)
T d1s0ya_ 9 YG-RTDEQKRALSAGLLRVISEAT 31 (62)
T ss_dssp TT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHHHHh
Confidence 46 599999999998888777665
No 9
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}
Probab=10.64 E-value=1.4e+02 Score=16.79 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1670 39 MTPERKKKLRLLLRKKAAEELKKEQE 64 (68)
Q Consensus 39 lTpErKKkLr~Llm~KAAEelK~eq~ 64 (68)
||++-+.+|. +++++|+.+++
T Consensus 146 l~~~E~~~l~-----~s~~~l~~~~~ 166 (174)
T d1pzga2 146 LNEEEKKQFQ-----KSVDDVMALNK 166 (174)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHH
T ss_pred CCHHHHHHHH-----HHHHHHHHHHH
Confidence 7888887764 57778877654
No 10
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.31 E-value=83 Score=16.50 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHH
Q psy1670 38 FMTPERKKKLRLLLR 52 (68)
Q Consensus 38 flTpErKKkLr~Llm 52 (68)
.|||+.+..++.+..
T Consensus 3 ~lt~~e~~~~~~~F~ 17 (95)
T d1c07a_ 3 VVSPAEKAKYDEIFL 17 (95)
T ss_dssp SSCSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 488999988887754
Done!